Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016802.01.T01 | XP_003602569.2 | 67.341 | 346 | 24 | 4 | 1 | 257 | 76 | 421 | 1.91E-143 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016802.01.T01 | Q6LA54 | 31.515 | 165 | 107 | 4 | 96 | 256 | 364 | 526 | 7.07E-21 | 95.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016802.01.T01 | G7JAZ8 | 67.341 | 346 | 24 | 4 | 1 | 257 | 76 | 421 | 9.12e-144 | 426 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003807.01 | MsG0380016802.01 | 0.801877 | 7.317382e-49 | 3.533761e-46 |
| MsG0180005493.01 | MsG0380016802.01 | 0.812811 | 3.512564e-51 | 2.255229e-48 |
| MsG0380012872.01 | MsG0380016802.01 | 0.832769 | 7.824292e-56 | 8.832176e-53 |
| MsG0380015702.01 | MsG0380016802.01 | 0.810065 | 1.387474e-50 | 8.282181e-48 |
| MsG0380016802.01 | MsG0380017401.01 | 0.806414 | 8.323416e-50 | 4.514824e-47 |
| MsG0380016802.01 | MsG0480019167.01 | 0.801414 | 9.107663e-49 | 4.346743e-46 |
| MsG0380016802.01 | MsG0480023172.01 | 0.823618 | 1.257033e-53 | 1.087905e-50 |
| MsG0380016802.01 | MsG0680034757.01 | 0.811013 | 8.656994e-51 | 5.299565e-48 |
| MsG0380016802.01 | MsG0780036773.01 | 0.816509 | 5.330828e-52 | 3.784570e-49 |
| MsG0380016802.01 | MsG0780040254.01 | 0.808433 | 3.104202e-50 | 1.774754e-47 |
| MsG0380016802.01 | MsG0780041767.01 | 0.808212 | 3.460008e-50 | 1.966713e-47 |
| MsG0380016802.01 | MsG0880045185.01 | 0.805333 | 1.404057e-49 | 7.408132e-47 |
| MsG0280007984.01 | MsG0380016802.01 | 0.827601 | 1.429777e-54 | 1.386715e-51 |
| MsG0280008030.01 | MsG0380016802.01 | 0.829018 | 6.507760e-55 | 6.578335e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016802.01.T01 | MTR_3g095780 | 67.341 | 346 | 24 | 4 | 1 | 257 | 76 | 421 | 2.31e-147 | 426 |
| MsG0380016802.01.T01 | MTR_8g092890 | 44.720 | 322 | 110 | 6 | 4 | 258 | 112 | 432 | 1.50e-71 | 231 |
| MsG0380016802.01.T01 | MTR_1g007740 | 45.638 | 149 | 80 | 1 | 110 | 258 | 357 | 504 | 2.11e-38 | 142 |
| MsG0380016802.01.T01 | MTR_3g491920 | 44.966 | 149 | 81 | 1 | 110 | 258 | 346 | 493 | 1.27e-37 | 140 |
| MsG0380016802.01.T01 | MTR_8g100005 | 39.865 | 148 | 88 | 1 | 110 | 257 | 366 | 512 | 5.27e-33 | 127 |
| MsG0380016802.01.T01 | MTR_8g100005 | 38.843 | 121 | 65 | 2 | 33 | 145 | 177 | 296 | 2.33e-15 | 75.9 |
| MsG0380016802.01.T01 | MTR_7g060420 | 44.262 | 122 | 66 | 2 | 137 | 257 | 546 | 666 | 3.37e-30 | 119 |
| MsG0380016802.01.T01 | MTR_7g060420 | 44.595 | 74 | 41 | 0 | 91 | 164 | 392 | 465 | 4.77e-13 | 68.9 |
| MsG0380016802.01.T01 | MTR_2g079740 | 43.846 | 130 | 72 | 1 | 129 | 257 | 501 | 630 | 6.94e-29 | 115 |
| MsG0380016802.01.T01 | MTR_2g079740 | 50.000 | 56 | 28 | 0 | 90 | 145 | 350 | 405 | 1.02e-11 | 65.1 |
| MsG0380016802.01.T01 | MTR_8g100005 | 42.276 | 123 | 70 | 1 | 110 | 232 | 366 | 487 | 6.98e-28 | 111 |
| MsG0380016802.01.T01 | MTR_8g100005 | 38.843 | 121 | 65 | 2 | 33 | 145 | 177 | 296 | 1.89e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016802.01.T01 | AT5G42010 | 48.101 | 158 | 79 | 3 | 103 | 258 | 349 | 505 | 1.11e-40 | 147 |
| MsG0380016802.01.T01 | AT5G42010 | 33.600 | 125 | 72 | 4 | 57 | 171 | 191 | 314 | 9.23e-11 | 62.0 |
| MsG0380016802.01.T01 | AT5G53500 | 47.297 | 148 | 77 | 1 | 111 | 258 | 323 | 469 | 1.90e-40 | 147 |
| MsG0380016802.01.T01 | AT5G53500 | 41.667 | 96 | 49 | 2 | 73 | 165 | 182 | 273 | 6.34e-15 | 74.7 |
| MsG0380016802.01.T01 | AT5G53500 | 47.297 | 148 | 77 | 1 | 111 | 258 | 323 | 469 | 1.90e-40 | 147 |
| MsG0380016802.01.T01 | AT5G53500 | 41.667 | 96 | 49 | 2 | 73 | 165 | 182 | 273 | 6.34e-15 | 74.7 |
| MsG0380016802.01.T01 | AT5G42010 | 48.101 | 158 | 79 | 3 | 103 | 258 | 349 | 505 | 5.61e-40 | 147 |
| MsG0380016802.01.T01 | AT1G64610 | 43.624 | 149 | 83 | 1 | 110 | 258 | 316 | 463 | 1.67e-36 | 137 |
| MsG0380016802.01.T01 | AT1G64610 | 43.624 | 149 | 83 | 1 | 110 | 258 | 316 | 463 | 1.67e-36 | 137 |
| MsG0380016802.01.T01 | AT5G24320 | 42.000 | 150 | 86 | 1 | 110 | 259 | 350 | 498 | 1.69e-34 | 131 |
| MsG0380016802.01.T01 | AT5G24320 | 39.837 | 123 | 66 | 4 | 51 | 165 | 179 | 301 | 6.41e-16 | 77.4 |
| MsG0380016802.01.T01 | AT5G24320 | 42.568 | 148 | 84 | 1 | 110 | 257 | 350 | 496 | 3.61e-34 | 130 |
| MsG0380016802.01.T01 | AT5G24320 | 39.837 | 123 | 66 | 4 | 51 | 165 | 179 | 301 | 6.51e-16 | 77.4 |
| MsG0380016802.01.T01 | AT1G48870 | 34.855 | 241 | 79 | 5 | 90 | 257 | 172 | 407 | 3.29e-32 | 124 |
| MsG0380016802.01.T01 | AT1G48870 | 34.855 | 241 | 79 | 5 | 90 | 257 | 172 | 407 | 3.29e-32 | 124 |
| MsG0380016802.01.T01 | AT1G48870 | 34.855 | 241 | 79 | 5 | 90 | 257 | 172 | 407 | 3.29e-32 | 124 |
| MsG0380016802.01.T01 | AT3G15470 | 43.846 | 130 | 72 | 1 | 129 | 257 | 525 | 654 | 3.28e-31 | 122 |
| MsG0380016802.01.T01 | AT3G15470 | 50.000 | 56 | 28 | 0 | 90 | 145 | 387 | 442 | 1.18e-11 | 65.1 |
| MsG0380016802.01.T01 | AT5G54200 | 44.615 | 130 | 71 | 1 | 129 | 257 | 480 | 609 | 4.59e-29 | 115 |
| MsG0380016802.01.T01 | AT5G54200 | 51.786 | 56 | 27 | 0 | 90 | 145 | 337 | 392 | 2.22e-12 | 67.0 |
| MsG0380016802.01.T01 | AT2G37670 | 43.089 | 123 | 67 | 3 | 137 | 257 | 527 | 648 | 1.41e-27 | 111 |
| MsG0380016802.01.T01 | AT2G37670 | 44.444 | 63 | 35 | 0 | 91 | 153 | 380 | 442 | 6.41e-12 | 65.9 |
| MsG0380016802.01.T01 | AT2G37670 | 43.089 | 123 | 67 | 3 | 137 | 257 | 526 | 647 | 1.48e-27 | 111 |
| MsG0380016802.01.T01 | AT2G37670 | 44.444 | 63 | 35 | 0 | 91 | 153 | 379 | 441 | 6.41e-12 | 65.9 |
| MsG0380016802.01.T01 | AT5G02430 | 41.803 | 122 | 69 | 2 | 137 | 257 | 539 | 659 | 7.13e-27 | 109 |
| MsG0380016802.01.T01 | AT5G02430 | 41.975 | 81 | 43 | 1 | 77 | 153 | 368 | 448 | 1.52e-12 | 67.8 |
Find 47 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTAGTTGGTTCCCTTTC+TGG | 0.046607 | 3:+88102073 | MsG0380016802.01.T01:CDS |
| TATTCGGACTTTACCATCTA+TGG | 0.238756 | 3:-88101847 | None:intergenic |
| TAGATGGTAAAGTCCGAATA+TGG | 0.287629 | 3:+88101850 | MsG0380016802.01.T01:CDS |
| GCAACAAGATTACTGGCTTC+AGG | 0.301997 | 3:+88102288 | MsG0380016802.01.T01:CDS |
| GAATCTAATGTTATTGATAA+TGG | 0.322378 | 3:+88100921 | MsG0380016802.01.T01:CDS |
| GAGCACACAAAGGTCTGATT+TGG | 0.326988 | 3:+88101105 | MsG0380016802.01.T01:CDS |
| AAGATGGTGTTGTTCGTATA+TGG | 0.331862 | 3:+88101174 | MsG0380016802.01.T01:CDS |
| ACTATGAAATTTAGTCCTAA+TGG | 0.360875 | 3:+88101128 | MsG0380016802.01.T01:CDS |
| TTCATAAGTGGCTCCATAGA+TGG | 0.361872 | 3:+88101834 | MsG0380016802.01.T01:CDS |
| TCATCTAGCAACAAGATTAC+TGG | 0.377747 | 3:+88102281 | MsG0380016802.01.T01:CDS |
| GAGTTCAGTGCTGTGTATAC+TGG | 0.402016 | 3:+88101071 | MsG0380016802.01.T01:CDS |
| GTTGCTAGATACTGACCATT+AGG | 0.403211 | 3:-88101143 | None:intergenic |
| GATGAAAATTATTTCATAAG+TGG | 0.407344 | 3:+88101822 | MsG0380016802.01.T01:CDS |
| ATTATGCAGGGGTTTGTAGT+TGG | 0.415942 | 3:+88102061 | MsG0380016802.01.T01:intron |
| GGGAAAGTTGGATCAAAATC+TGG | 0.430767 | 3:+88100987 | MsG0380016802.01.T01:CDS |
| CTTCATGTACTCCCCATATT+CGG | 0.434332 | 3:-88101863 | None:intergenic |
| TAAGGCACAATAAGAAAAGT+TGG | 0.437822 | 3:+88101045 | MsG0380016802.01.T01:CDS |
| AATGGTCAGTATCTAGCAAC+TGG | 0.444139 | 3:+88101146 | MsG0380016802.01.T01:CDS |
| ATGAAGAGCGAGTTGTCGAC+TGG | 0.456687 | 3:+88101880 | MsG0380016802.01.T01:CDS |
| AGATGGTGTTGTTCGTATAT+GGG | 0.464267 | 3:+88101175 | MsG0380016802.01.T01:CDS |
| ATGGGGTGTGTCATCGTTGA+AGG | 0.467121 | 3:+88101193 | MsG0380016802.01.T01:CDS |
| CCATAACATACCTTCCCATC+TGG | 0.476629 | 3:-88101942 | None:intergenic |
| AAGCTCTTCAAATCAATGTA+AGG | 0.479497 | 3:+88101027 | MsG0380016802.01.T01:CDS |
| AGATGGTAAAGTCCGAATAT+GGG | 0.483163 | 3:+88101851 | MsG0380016802.01.T01:CDS |
| GTTCTGAACAGAGGGAAAGT+TGG | 0.483587 | 3:+88100975 | MsG0380016802.01.T01:CDS |
| CTAGCAACTGGAGGTGAAGA+TGG | 0.490216 | 3:+88101158 | MsG0380016802.01.T01:CDS |
| CACGAATCTTCGCCTCAAGC+CGG | 0.508508 | 3:-88102241 | None:intergenic |
| TGGATCAAAATCTGGTAATG+TGG | 0.511802 | 3:+88100995 | MsG0380016802.01.T01:CDS |
| TGAACATGTTTATGAGAAGT+TGG | 0.512766 | 3:+88100815 | MsG0380016802.01.T01:CDS |
| TCTATGTCTCAGATCTTGAC+TGG | 0.517118 | 3:-88100880 | None:intergenic |
| AAAAGCGGCAAGTACCAGAA+AGG | 0.554372 | 3:-88102087 | None:intergenic |
| AAAGCGGCAAGTACCAGAAA+GGG | 0.559011 | 3:-88102086 | None:intergenic |
| GGATCAAAATCTGGTAATGT+GGG | 0.564126 | 3:+88100996 | MsG0380016802.01.T01:CDS |
| GCTATAAGTTATCAGCCAGA+TGG | 0.565063 | 3:+88101927 | MsG0380016802.01.T01:CDS |
| CTATAAGTTATCAGCCAGAT+GGG | 0.565776 | 3:+88101928 | MsG0380016802.01.T01:CDS |
| AAGTTATCAGCCAGATGGGA+AGG | 0.588790 | 3:+88101932 | MsG0380016802.01.T01:CDS |
| GGAACAAAGTTCTGAACAGA+GGG | 0.597152 | 3:+88100967 | MsG0380016802.01.T01:CDS |
| AGGTAAACAATTCCGGCTTG+AGG | 0.597227 | 3:+88102229 | MsG0380016802.01.T01:intron |
| GATGGTGTTGTTCGTATATG+GGG | 0.600211 | 3:+88101176 | MsG0380016802.01.T01:CDS |
| GAGAGGATCATGGATTGTAG+TGG | 0.600960 | 3:+88100759 | None:intergenic |
| GATGGTAAAGTCCGAATATG+GGG | 0.607566 | 3:+88101852 | MsG0380016802.01.T01:CDS |
| TACCTGAAGCAACATAAAAG+CGG | 0.617948 | 3:-88102102 | None:intergenic |
| TGGAACAAAGTTCTGAACAG+AGG | 0.619715 | 3:+88100966 | MsG0380016802.01.T01:CDS |
| TGAAGAGCGAGTTGTCGACT+GGG | 0.627970 | 3:+88101881 | MsG0380016802.01.T01:CDS |
| GGTCAGTATCTAGCAACTGG+AGG | 0.664400 | 3:+88101149 | MsG0380016802.01.T01:CDS |
| AATCTGGTAATGTGGGTACG+AGG | 0.666191 | 3:+88101003 | MsG0380016802.01.T01:CDS |
| CAAGAGATTAGAGCACACAA+AGG | 0.749686 | 3:+88101095 | MsG0380016802.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGAATTTTATGATTTT+AGG | + | Chr3:88102209-88102228 | MsG0380016802.01.T01:intron | 10.0% |
| !! | AATACATTAATAAGAAAAGA+AGG | - | Chr3:88101667-88101686 | None:intergenic | 15.0% |
| !! | ATAGGTTAAAAATCATACTA+AGG | - | Chr3:88102033-88102052 | None:intergenic | 20.0% |
| !! | GAATCTAATGTTATTGATAA+TGG | + | Chr3:88100921-88100940 | MsG0380016802.01.T01:CDS | 20.0% |
| !! | GATGAAAATTATTTCATAAG+TGG | + | Chr3:88101822-88101841 | MsG0380016802.01.T01:CDS | 20.0% |
| !! | TATTATGAATACAATGCAAA+AGG | + | Chr3:88102161-88102180 | MsG0380016802.01.T01:intron | 20.0% |
| !!! | ATGAAATAATTTTCATCAAC+TGG | - | Chr3:88101819-88101838 | None:intergenic | 20.0% |
| !!! | TGAAATAATTTTCATCAACT+GGG | - | Chr3:88101818-88101837 | None:intergenic | 20.0% |
| ! | AAGGAAAATTCTCAAAATTG+AGG | + | Chr3:88101321-88101340 | MsG0380016802.01.T01:intron | 25.0% |
| ! | ACTATGAAATTTAGTCCTAA+TGG | + | Chr3:88101128-88101147 | MsG0380016802.01.T01:CDS | 25.0% |
| ! | AGAAATGCAATAGGTAAAAA+AGG | - | Chr3:88102001-88102020 | None:intergenic | 25.0% |
| ! | GTAAAAAGAAGAAGAAAAAG+TGG | + | Chr3:88100943-88100962 | MsG0380016802.01.T01:CDS | 25.0% |
| ! | TTATCATCATCATCATCTTT+GGG | - | Chr3:88100846-88100865 | None:intergenic | 25.0% |
| ! | TTTATCATCATCATCATCTT+TGG | - | Chr3:88100847-88100866 | None:intergenic | 25.0% |
| !!! | AACTGTGTCTCTATTTTAAT+TGG | + | Chr3:88101767-88101786 | MsG0380016802.01.T01:intron | 25.0% |
| !!! | CTATTGCTTTTTATTATGCA+GGG | + | Chr3:88102049-88102068 | MsG0380016802.01.T01:intron | 25.0% |
| !!! | TATTGCTTTTTATTATGCAG+GGG | + | Chr3:88102050-88102069 | MsG0380016802.01.T01:intron | 25.0% |
| !!! | TGATTTTAGGTAAACAATTC+CGG | + | Chr3:88102222-88102241 | MsG0380016802.01.T01:intron | 25.0% |
| !!! | TTTTTTACCTATTGCATTTC+TGG | + | Chr3:88102000-88102019 | MsG0380016802.01.T01:intron | 25.0% |
| AAAAGAAGAAGAAAAAGTGG+TGG | + | Chr3:88100946-88100965 | MsG0380016802.01.T01:CDS | 30.0% | |
| AAAGTTACCAGAAATGCAAT+AGG | - | Chr3:88102010-88102029 | None:intergenic | 30.0% | |
| AAGCTCTTCAAATCAATGTA+AGG | + | Chr3:88101027-88101046 | MsG0380016802.01.T01:CDS | 30.0% | |
| ACTTACCATAATCATTGTGA+TGG | - | Chr3:88101635-88101654 | None:intergenic | 30.0% | |
| AGAGCTTATAGCATAATTGA+GGG | - | Chr3:88101483-88101502 | None:intergenic | 30.0% | |
| CCTGCATAATAAAAAGCAAT+AGG | - | Chr3:88102051-88102070 | None:intergenic | 30.0% | |
| TAAGGCACAATAAGAAAAGT+TGG | + | Chr3:88101045-88101064 | MsG0380016802.01.T01:CDS | 30.0% | |
| TAGAGCTTATAGCATAATTG+AGG | - | Chr3:88101484-88101503 | None:intergenic | 30.0% | |
| TGAACATGTTTATGAGAAGT+TGG | + | Chr3:88100815-88100834 | MsG0380016802.01.T01:CDS | 30.0% | |
| ! | GTTTTCCATCACAATGATTA+TGG | + | Chr3:88101627-88101646 | MsG0380016802.01.T01:intron | 30.0% |
| ! | TGTCTTTTTCTCCAAAGAAA+TGG | + | Chr3:88101273-88101292 | MsG0380016802.01.T01:intron | 30.0% |
| !!! | CCTATTGCTTTTTATTATGC+AGG | + | Chr3:88102048-88102067 | MsG0380016802.01.T01:intron | 30.0% |
| ACCATATAGTTCTTGCAATC+GGG | - | Chr3:88101388-88101407 | None:intergenic | 35.0% | |
| AGATGGTAAAGTCCGAATAT+GGG | + | Chr3:88101851-88101870 | MsG0380016802.01.T01:CDS | 35.0% | |
| CAAGGAAAAGTCCAAAATTG+AGG | + | Chr3:88101354-88101373 | MsG0380016802.01.T01:intron | 35.0% | |
| CTATAAGTTATCAGCCAGAT+GGG | + | Chr3:88101928-88101947 | MsG0380016802.01.T01:CDS | 35.0% | |
| GAAAAGTCCAAAATTGAGGA+AGG | + | Chr3:88101358-88101377 | MsG0380016802.01.T01:intron | 35.0% | |
| GACCATATAGTTCTTGCAAT+CGG | - | Chr3:88101389-88101408 | None:intergenic | 35.0% | |
| TACCTGAAGCAACATAAAAG+CGG | - | Chr3:88102105-88102124 | None:intergenic | 35.0% | |
| TAGATGGTAAAGTCCGAATA+TGG | + | Chr3:88101850-88101869 | MsG0380016802.01.T01:CDS | 35.0% | |
| TATTCGGACTTTACCATCTA+TGG | - | Chr3:88101850-88101869 | None:intergenic | 35.0% | |
| TCATCTAGCAACAAGATTAC+TGG | + | Chr3:88102281-88102300 | MsG0380016802.01.T01:CDS | 35.0% | |
| ! | AACTGTTTTATCCATAGACG+AGG | - | Chr3:88101572-88101591 | None:intergenic | 35.0% |
| ! | AATTTTCCTTGAAGAACAGC+TGG | - | Chr3:88101311-88101330 | None:intergenic | 35.0% |
| ! | ATTTTCCTTGAAGAACAGCT+GGG | - | Chr3:88101310-88101329 | None:intergenic | 35.0% |
| ! | GGATCAAAATCTGGTAATGT+GGG | + | Chr3:88100996-88101015 | MsG0380016802.01.T01:CDS | 35.0% |
| ! | TGGATCAAAATCTGGTAATG+TGG | + | Chr3:88100995-88101014 | MsG0380016802.01.T01:CDS | 35.0% |
| !! | AAGATGGTGTTGTTCGTATA+TGG | + | Chr3:88101174-88101193 | MsG0380016802.01.T01:CDS | 35.0% |
| !! | AGATGGTGTTGTTCGTATAT+GGG | + | Chr3:88101175-88101194 | MsG0380016802.01.T01:CDS | 35.0% |
| AACAGTTCGCATGTGGAAAA+TGG | + | Chr3:88101585-88101604 | MsG0380016802.01.T01:intron | 40.0% | |
| AATGGTCAGTATCTAGCAAC+TGG | + | Chr3:88101146-88101165 | MsG0380016802.01.T01:CDS | 40.0% | |
| ATTATGCAGGGGTTTGTAGT+TGG | + | Chr3:88102061-88102080 | MsG0380016802.01.T01:intron | 40.0% | |
| CAAGAGATTAGAGCACACAA+AGG | + | Chr3:88101095-88101114 | MsG0380016802.01.T01:CDS | 40.0% | |
| CCATATAGTTCTTGCAATCG+GGG | - | Chr3:88101387-88101406 | None:intergenic | 40.0% | |
| CTTCATGTACTCCCCATATT+CGG | - | Chr3:88101866-88101885 | None:intergenic | 40.0% | |
| GATGGTAAAGTCCGAATATG+GGG | + | Chr3:88101852-88101871 | MsG0380016802.01.T01:CDS | 40.0% | |
| GCTATAAGTTATCAGCCAGA+TGG | + | Chr3:88101927-88101946 | MsG0380016802.01.T01:CDS | 40.0% | |
| GGGAAAGTTGGATCAAAATC+TGG | + | Chr3:88100987-88101006 | MsG0380016802.01.T01:CDS | 40.0% | |
| GTTGCTAGATACTGACCATT+AGG | - | Chr3:88101146-88101165 | None:intergenic | 40.0% | |
| TCTATGTCTCAGATCTTGAC+TGG | - | Chr3:88100883-88100902 | None:intergenic | 40.0% | |
| TGGATAAAACAGTTCGCATG+TGG | + | Chr3:88101578-88101597 | MsG0380016802.01.T01:intron | 40.0% | |
| TGGTCATTCTAGTGATGTGA+TGG | + | Chr3:88101404-88101423 | MsG0380016802.01.T01:intron | 40.0% | |
| TTCATAAGTGGCTCCATAGA+TGG | + | Chr3:88101834-88101853 | MsG0380016802.01.T01:CDS | 40.0% | |
| ! | GTTTTGCTCGACCATTTCTT+TGG | - | Chr3:88101287-88101306 | None:intergenic | 40.0% |
| ! | TTTGTAGTTGGTTCCCTTTC+TGG | + | Chr3:88102073-88102092 | MsG0380016802.01.T01:CDS | 40.0% |
| ! | TTTTCCTTGAAGAACAGCTG+GGG | - | Chr3:88101309-88101328 | None:intergenic | 40.0% |
| ! | TTTTGGACTTTTCCTTGCAG+CGG | - | Chr3:88101351-88101370 | None:intergenic | 40.0% |
| !! | GATGGTGTTGTTCGTATATG+GGG | + | Chr3:88101176-88101195 | MsG0380016802.01.T01:CDS | 40.0% |
| !! | GGAACAAAGTTCTGAACAGA+GGG | + | Chr3:88100967-88100986 | MsG0380016802.01.T01:CDS | 40.0% |
| !! | TGGAACAAAGTTCTGAACAG+AGG | + | Chr3:88100966-88100985 | MsG0380016802.01.T01:CDS | 40.0% |
| !! | TTCTAGTGATGTGATGGACT+TGG | + | Chr3:88101410-88101429 | MsG0380016802.01.T01:intron | 40.0% |
| AAAACCCCAGCTGTTCTTCA+AGG | + | Chr3:88101302-88101321 | MsG0380016802.01.T01:intron | 45.0% | |
| AAAAGCGGCAAGTACCAGAA+AGG | - | Chr3:88102090-88102109 | None:intergenic | 45.0% | |
| AAAGCGGCAAGTACCAGAAA+GGG | - | Chr3:88102089-88102108 | None:intergenic | 45.0% | |
| AAGTTATCAGCCAGATGGGA+AGG | + | Chr3:88101932-88101951 | MsG0380016802.01.T01:CDS | 45.0% | |
| CCATAACATACCTTCCCATC+TGG | - | Chr3:88101945-88101964 | None:intergenic | 45.0% | |
| CCCCGATTGCAAGAACTATA+TGG | + | Chr3:88101384-88101403 | MsG0380016802.01.T01:intron | 45.0% | |
| GAGCACACAAAGGTCTGATT+TGG | + | Chr3:88101105-88101124 | MsG0380016802.01.T01:CDS | 45.0% | |
| GAGTTCAGTGCTGTGTATAC+TGG | + | Chr3:88101071-88101090 | MsG0380016802.01.T01:CDS | 45.0% | |
| GATGCTTCTTTCCTCGTCTA+TGG | + | Chr3:88101558-88101577 | MsG0380016802.01.T01:intron | 45.0% | |
| ! | AATCTGGTAATGTGGGTACG+AGG | + | Chr3:88101003-88101022 | MsG0380016802.01.T01:CDS | 45.0% |
| ! | AGGTAAACAATTCCGGCTTG+AGG | + | Chr3:88102229-88102248 | MsG0380016802.01.T01:intron | 45.0% |
| ! | CCAGATGGGAAGGTATGTTA+TGG | + | Chr3:88101942-88101961 | MsG0380016802.01.T01:intron | 45.0% |
| ! | GGGGATTCCTTCCTCAATTT+TGG | - | Chr3:88101368-88101387 | None:intergenic | 45.0% |
| ! | GTTCTGAACAGAGGGAAAGT+TGG | + | Chr3:88100975-88100994 | MsG0380016802.01.T01:CDS | 45.0% |
| ! | TTTGGACTTTTCCTTGCAGC+GGG | - | Chr3:88101350-88101369 | None:intergenic | 45.0% |
| !! | AGGAAAGAAGCATCTGCAAC+AGG | - | Chr3:88101552-88101571 | None:intergenic | 45.0% |
| !! | GCAACAAGATTACTGGCTTC+AGG | + | Chr3:88102288-88102307 | MsG0380016802.01.T01:CDS | 45.0% |
| !!! | TGCCGCTTTTATGTTGCTTC+AGG | + | Chr3:88102100-88102119 | MsG0380016802.01.T01:CDS | 45.0% |
| ATGAAGAGCGAGTTGTCGAC+TGG | + | Chr3:88101880-88101899 | MsG0380016802.01.T01:CDS | 50.0% | |
| ATGGGGTGTGTCATCGTTGA+AGG | + | Chr3:88101193-88101212 | MsG0380016802.01.T01:CDS | 50.0% | |
| CTAGCAACTGGAGGTGAAGA+TGG | + | Chr3:88101158-88101177 | MsG0380016802.01.T01:CDS | 50.0% | |
| GGTCAGTATCTAGCAACTGG+AGG | + | Chr3:88101149-88101168 | MsG0380016802.01.T01:CDS | 50.0% | |
| ! | TGAAGAGCGAGTTGTCGACT+GGG | + | Chr3:88101881-88101900 | MsG0380016802.01.T01:CDS | 50.0% |
| ! | TTGGACTTTTCCTTGCAGCG+GGG | - | Chr3:88101349-88101368 | None:intergenic | 50.0% |
| !! | GTGATGTGATGGACTTGGCT+TGG | + | Chr3:88101415-88101434 | MsG0380016802.01.T01:intron | 50.0% |
| AATTGAGGATCCCCGCTGCA+AGG | + | Chr3:88101336-88101355 | MsG0380016802.01.T01:intron | 55.0% | |
| CACGAATCTTCGCCTCAAGC+CGG | - | Chr3:88102244-88102263 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 88100768 | 88102322 | 88100768 | ID=MsG0380016802.01;Name=MsG0380016802.01 |
| Chr3 | mRNA | 88100768 | 88102322 | 88100768 | ID=MsG0380016802.01.T01;Parent=MsG0380016802.01;Name=MsG0380016802.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|0.66|0.75|4|0|259 |
| Chr3 | exon | 88100768 | 88101245 | 88100768 | ID=MsG0380016802.01.T01:exon:22684;Parent=MsG0380016802.01.T01 |
| Chr3 | exon | 88101796 | 88101953 | 88101796 | ID=MsG0380016802.01.T01:exon:22685;Parent=MsG0380016802.01.T01 |
| Chr3 | exon | 88102070 | 88102121 | 88102070 | ID=MsG0380016802.01.T01:exon:22686;Parent=MsG0380016802.01.T01 |
| Chr3 | exon | 88102231 | 88102322 | 88102231 | ID=MsG0380016802.01.T01:exon:22687;Parent=MsG0380016802.01.T01 |
| Chr3 | CDS | 88100768 | 88101245 | 88100768 | ID=MsG0380016802.01.T01:cds;Parent=MsG0380016802.01.T01 |
| Chr3 | CDS | 88101796 | 88101953 | 88101796 | ID=MsG0380016802.01.T01:cds;Parent=MsG0380016802.01.T01 |
| Chr3 | CDS | 88102070 | 88102121 | 88102070 | ID=MsG0380016802.01.T01:cds;Parent=MsG0380016802.01.T01 |
| Chr3 | CDS | 88102231 | 88102322 | 88102231 | ID=MsG0380016802.01.T01:cds;Parent=MsG0380016802.01.T01 |
| Gene Sequence |
| Protein sequence |
