AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040254.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040254.01.T01 MTR_7g086690 97.133 593 10 2 1 593 4 589 0.0 1153
MsG0780040254.01.T01 MTR_6g027570 63.590 585 195 7 9 592 10 577 0.0 648
MsG0780040254.01.T01 MTR_6g027580 48.818 592 280 9 2 587 12 586 7.76e-162 475
MsG0780040254.01.T01 MTR_8g021180 43.441 587 297 7 26 584 67 646 2.78e-146 437
MsG0780040254.01.T01 MTR_7g113730 32.063 446 242 10 94 525 59 457 3.20e-44 165
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040254.01.T01 AT5G17860 47.874 541 262 4 49 587 45 567 5.53e-167 488
MsG0780040254.01.T01 AT5G17850 50.258 581 251 10 12 587 12 559 1.79e-163 478
MsG0780040254.01.T01 AT5G17850 50.258 581 251 10 12 587 12 559 1.79e-163 478
MsG0780040254.01.T01 AT5G17860 46.753 539 236 3 49 587 45 532 1.11e-158 465
MsG0780040254.01.T01 AT1G54115 42.857 560 273 7 60 584 91 638 2.80e-151 450
MsG0780040254.01.T01 AT3G14070 43.716 549 282 7 60 584 92 637 3.56e-147 439
MsG0780040254.01.T01 AT1G08960 30.237 506 291 13 36 525 26 485 4.69e-54 193

Find 102 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGGAAATTTCCCTTTAT+TGG 0.076464 7:-74995238 MsG0780040254.01.T01:CDS
ACTTGGTTCTCTTCAATTTA+AGG 0.089846 7:-74993783 MsG0780040254.01.T01:CDS
CACAAGGGTTGTTTGATTTA+AGG 0.133984 7:+74995304 None:intergenic
TCATCAAGCCTATTAGTTTA+TGG 0.163372 7:-74994367 MsG0780040254.01.T01:CDS
ATTGGTTCTCTTCTATCTTT+TGG 0.181075 7:-74995190 MsG0780040254.01.T01:CDS
AGCCTATTAGTTTATGGAAT+TGG 0.211692 7:-74994361 MsG0780040254.01.T01:CDS
AGTTTATGGAATTGGGTTAT+TGG 0.214182 7:-74994353 MsG0780040254.01.T01:CDS
AATTTAACAATGGCTTTAAA+TGG 0.222751 7:-74994094 MsG0780040254.01.T01:CDS
ACTTCATTTCTCTTATTCTT+AGG 0.245806 7:-74993817 MsG0780040254.01.T01:CDS
GCCAATGTCTCCCACAAATA+TGG 0.253071 7:+74993935 None:intergenic
TAGAATGTTACTTTATGTTT+TGG 0.260934 7:-74994539 MsG0780040254.01.T01:CDS
ATTGGAAATTTCCCTTTATT+GGG 0.271619 7:-74995237 MsG0780040254.01.T01:CDS
GGTGTCACTCTTCTCTCTCT+TGG 0.274952 7:-74995090 MsG0780040254.01.T01:CDS
TTATTGGTTGGAATTATATT+AGG 0.290689 7:-74994337 MsG0780040254.01.T01:CDS
AACTAATAGGCTTGATGAAT+TGG 0.297305 7:+74994372 None:intergenic
ATTGGATTCAACACTGTTCT+TGG 0.331351 7:-74995006 MsG0780040254.01.T01:CDS
GCCTATTAGTTTATGGAATT+GGG 0.332807 7:-74994360 MsG0780040254.01.T01:CDS
AAAAGGGTATGACCCAATAA+AGG 0.334456 7:+74995225 None:intergenic
AGGCTTTCACCAACTATTGC+TGG 0.335790 7:-74995111 MsG0780040254.01.T01:CDS
GGGGCTCAAATAGCAATTTC+AGG 0.338302 7:-74994061 MsG0780040254.01.T01:CDS
AAAGTTTCTGTTATTATTGT+TGG 0.338919 7:+74995401 None:intergenic
ACCCAATTCCATAAACTAAT+AGG 0.345445 7:+74994359 None:intergenic
TTTGGTTGTTGGATTGATTT+GGG 0.349011 7:-74993909 MsG0780040254.01.T01:CDS
TTCAATACAGTTGTTGGATT+GGG 0.352207 7:-74994019 MsG0780040254.01.T01:CDS
CTTGTTTCTTTCAAAGGTAA+TGG 0.356613 7:-74995039 MsG0780040254.01.T01:CDS
TTGTTTCTTTCAAAGGTAAT+GGG 0.357414 7:-74995038 MsG0780040254.01.T01:CDS
ATTTCAGCTCAAGAATTAGT+AGG 0.359746 7:-74994214 MsG0780040254.01.T01:CDS
CCTATCTTCAATACAGTTGT+TGG 0.365242 7:-74994025 MsG0780040254.01.T01:CDS
CACAACAACACAAGAAATAA+AGG 0.365515 7:+74994975 None:intergenic
GTTTCACTTGGTTTCATATG+TGG 0.378949 7:-74994184 MsG0780040254.01.T01:CDS
GTGTCACTCTTCTCTCTCTT+GGG 0.389245 7:-74995089 MsG0780040254.01.T01:CDS
GGTGTTAATCCTTCAATACT+TGG 0.389771 7:-74994163 MsG0780040254.01.T01:CDS
GATTTAGATGTTCCTCTACT+TGG 0.392499 7:-74994670 MsG0780040254.01.T01:CDS
CTTCAATACAGTTGTTGGAT+TGG 0.393064 7:-74994020 MsG0780040254.01.T01:CDS
TTGTTACCATGGCTAGCTGC+AGG 0.398686 7:-74994265 MsG0780040254.01.T01:CDS
TTTATTTCTTGTGTTGTTGT+GGG 0.405964 7:-74994973 MsG0780040254.01.T01:CDS
TGGATTAACAGTACTTGCTT+GGG 0.408172 7:-74994143 MsG0780040254.01.T01:CDS
TATCTCTTGTTACATCTACT+TGG 0.418938 7:-74993994 MsG0780040254.01.T01:CDS
CTTTATTTCTTGTGTTGTTG+TGG 0.419235 7:-74994974 MsG0780040254.01.T01:CDS
TTTCCTTTGGATTCCATACA+AGG 0.420611 7:-74994407 MsG0780040254.01.T01:CDS
ACTGTTAATCCAAGTATTGA+AGG 0.428915 7:+74994154 None:intergenic
CCAACAACTGTATTGAAGAT+AGG 0.432471 7:+74994025 None:intergenic
GCAATTTCAGGTTGTTATGC+TGG 0.432764 7:-74994049 MsG0780040254.01.T01:CDS
TTGGATTAACAGTACTTGCT+TGG 0.435057 7:-74994144 MsG0780040254.01.T01:CDS
TATGGAATTGGGTTATTGGT+TGG 0.441874 7:-74994349 MsG0780040254.01.T01:CDS
GATGAAGTTGAAAGTGATTA+CGG 0.447215 7:-74994721 MsG0780040254.01.T01:CDS
CCAATAACCATAGAAACAAA+AGG 0.447694 7:+74995208 None:intergenic
AATAACAGAAACTTTGTCTC+TGG 0.459319 7:-74995393 MsG0780040254.01.T01:CDS
ACTCTTCTCTCTCTTGGGAA+TGG 0.465576 7:-74995084 MsG0780040254.01.T01:CDS
GCCACACTTGTTTCTTTCAA+AGG 0.465678 7:-74995045 MsG0780040254.01.T01:CDS
TTGTTCAGTGTCTTCATCAA+TGG 0.469754 7:-74994856 MsG0780040254.01.T01:CDS
TGGTGAAAGCCTCAAAACTT+TGG 0.469895 7:+74995122 None:intergenic
TCCATATTTGTGGGAGACAT+TGG 0.474566 7:-74993936 MsG0780040254.01.T01:CDS
CTAGGTATCACAATAGATGA+AGG 0.475246 7:+74993962 None:intergenic
CTTAGGCTTACTCAAACACT+TGG 0.475303 7:-74993800 MsG0780040254.01.T01:CDS
CAGATTCATAGCAATTCAAA+TGG 0.477046 7:-74994625 MsG0780040254.01.T01:CDS
AAAGGGTATGACCCAATAAA+GGG 0.479389 7:+74995226 None:intergenic
GCTTTAAATGGTGGGCCAGA+GGG 0.482620 7:-74994082 MsG0780040254.01.T01:CDS
ACAGGAATTGTTAATCTCCT+AGG 0.487004 7:+74994499 None:intergenic
ATCAATGTTGTTGTGGCAGT+TGG 0.487147 7:-74994829 MsG0780040254.01.T01:CDS
ATGAAGCTTGATGCAATGTT+AGG 0.498376 7:-74993860 MsG0780040254.01.T01:CDS
TAACAATGGCTTTAAATGGT+GGG 0.499024 7:-74994090 MsG0780040254.01.T01:CDS
GTCACATCTAGCAAAAGAAA+AGG 0.510055 7:-74994766 MsG0780040254.01.T01:CDS
TTAACAATGGCTTTAAATGG+TGG 0.512871 7:-74994091 MsG0780040254.01.T01:CDS
TTTCAGCTCAAGAATTAGTA+GGG 0.519227 7:-74994213 MsG0780040254.01.T01:CDS
GTAGGGTTGTTAGTTTCACT+TGG 0.521163 7:-74994196 MsG0780040254.01.T01:CDS
GGTAATGGGACACAAGGCAT+TGG 0.522056 7:-74995024 MsG0780040254.01.T01:CDS
TTTAAATGGTGGGCCAGAGG+GGG 0.522665 7:-74994080 MsG0780040254.01.T01:CDS
TGTTACCATGGCTAGCTGCA+GGG 0.525417 7:-74994264 MsG0780040254.01.T01:CDS
TCCCACAAATATGGATCTCT+AGG 0.527255 7:+74993944 None:intergenic
CAAAGGAAAGCTAATAAAAG+TGG 0.528694 7:+74994421 None:intergenic
GGATTCAACACTGTTCTTGG+TGG 0.529370 7:-74995003 MsG0780040254.01.T01:CDS
TACCTAGAGATCCATATTTG+TGG 0.534234 7:-74993946 MsG0780040254.01.T01:CDS
CTCTGGTGTCACTGATGATG+AGG 0.535420 7:-74995376 MsG0780040254.01.T01:CDS
GGCTTTAAATGGTGGGCCAG+AGG 0.537518 7:-74994083 MsG0780040254.01.T01:CDS
CAAGAAAATTCTTGTTACCA+TGG 0.539455 7:-74994276 MsG0780040254.01.T01:CDS
ATATGCCTCTTTACCTGCCT+AGG 0.553833 7:-74994516 MsG0780040254.01.T01:CDS
TTGGAGAGATTATCAAGAGA+AGG 0.561396 7:+74995141 None:intergenic
ACCTAGAGATCCATATTTGT+GGG 0.562034 7:-74993945 MsG0780040254.01.T01:CDS
CAATAACCATAGAAACAAAA+GGG 0.563756 7:+74995209 None:intergenic
GGATTAACAGTACTTGCTTG+GGG 0.569748 7:-74994142 MsG0780040254.01.T01:CDS
TACGGTGATTCAAGAAGTCA+TGG 0.570293 7:-74994703 MsG0780040254.01.T01:CDS
CTTTAAATGGTGGGCCAGAG+GGG 0.577285 7:-74994081 MsG0780040254.01.T01:CDS
TTTCCTTGTATGGAATCCAA+AGG 0.578564 7:+74994404 None:intergenic
GAATTGTTAATCTCCTAGGC+AGG 0.580458 7:+74994503 None:intergenic
AGAGTGACACCAGCAATAGT+TGG 0.584420 7:+74995102 None:intergenic
CTTGATGCAATGTTAGGTGG+AGG 0.588704 7:-74993854 MsG0780040254.01.T01:CDS
AATCTCCTAGGCAGGTAAAG+AGG 0.593056 7:+74994511 None:intergenic
TTTAGTGACTAATTTAACAA+TGG 0.604981 7:-74994104 MsG0780040254.01.T01:CDS
TTCAAAGGTAATGGGACACA+AGG 0.612012 7:-74995030 MsG0780040254.01.T01:CDS
ACATAGCCTTGTGTGACACA+AGG 0.613048 7:+74995288 None:intergenic
ACAAACCCTGCAGCTAGCCA+TGG 0.621070 7:+74994259 None:intergenic
TGGTGAAATCAATGTTGTTG+TGG 0.630057 7:-74994836 MsG0780040254.01.T01:CDS
AAGCTTGATGCAATGTTAGG+TGG 0.631062 7:-74993857 MsG0780040254.01.T01:CDS
GATTCAAGAAGTCATGGCAA+TGG 0.631409 7:-74994697 MsG0780040254.01.T01:CDS
TAGGTATCACAATAGATGAA+GGG 0.638422 7:+74993963 None:intergenic
GATTAACAGTACTTGCTTGG+GGG 0.639126 7:-74994141 MsG0780040254.01.T01:CDS
AACAACCCTTGTGTCACACA+AGG 0.639893 7:-74995294 MsG0780040254.01.T01:CDS
CATAGCCTTGTGTGACACAA+GGG 0.653566 7:+74995289 None:intergenic
ACCTTTGAAAGAAACAAGTG+TGG 0.657131 7:+74995044 None:intergenic
TTCTCCATAAAACCAAGTAG+AGG 0.658159 7:+74994658 None:intergenic
GGTTTGTGATGAGTGTGACA+TGG 0.672642 7:-74994243 MsG0780040254.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTTCTGTTATTATTGT+TGG + Chr7:74993899-74993918 None:intergenic 20.0%
!! TTTAGTGACTAATTTAACAA+TGG - Chr7:74995193-74995212 MsG0780040254.01.T01:CDS 20.0%
!!! AATTTAACAATGGCTTTAAA+TGG - Chr7:74995203-74995222 MsG0780040254.01.T01:CDS 20.0%
!!! TACATTTTCTATTGCAAAAT+TGG - Chr7:74994042-74994061 MsG0780040254.01.T01:CDS 20.0%
!!! TAGAATGTTACTTTATGTTT+TGG - Chr7:74994758-74994777 MsG0780040254.01.T01:CDS 20.0%
!!! TTATTGGTTGGAATTATATT+AGG - Chr7:74994960-74994979 MsG0780040254.01.T01:CDS 20.0%
!!! TTTTGCAATAGAAAATGTAA+AGG + Chr7:74994041-74994060 None:intergenic 20.0%
! AATTGGAAATTTCCCTTTAT+TGG - Chr7:74994059-74994078 MsG0780040254.01.T01:CDS 25.0%
! ACTTCATTTCTCTTATTCTT+AGG - Chr7:74995480-74995499 MsG0780040254.01.T01:CDS 25.0%
! ATTGGAAATTTCCCTTTATT+GGG - Chr7:74994060-74994079 MsG0780040254.01.T01:CDS 25.0%
! CAATAACCATAGAAACAAAA+GGG + Chr7:74994091-74994110 None:intergenic 25.0%
! GAAAAACACAAAACAACAAA+AGG + Chr7:74993822-74993841 None:intergenic 25.0%
!! TTGTTTCTTTCAAAGGTAAT+GGG - Chr7:74994259-74994278 MsG0780040254.01.T01:CDS 25.0%
!! TTTATTTCTTGTGTTGTTGT+GGG - Chr7:74994324-74994343 MsG0780040254.01.T01:CDS 25.0%
AACTAATAGGCTTGATGAAT+TGG + Chr7:74994928-74994947 None:intergenic 30.0%
AATAACAGAAACTTTGTCTC+TGG - Chr7:74993904-74993923 MsG0780040254.01.T01:CDS 30.0%
ACCCAATTCCATAAACTAAT+AGG + Chr7:74994941-74994960 None:intergenic 30.0%
AGTTTATGGAATTGGGTTAT+TGG - Chr7:74994944-74994963 MsG0780040254.01.T01:CDS 30.0%
ATTTCAGCTCAAGAATTAGT+AGG - Chr7:74995083-74995102 MsG0780040254.01.T01:CDS 30.0%
CAAAGGAAAGCTAATAAAAG+TGG + Chr7:74994879-74994898 None:intergenic 30.0%
CAAGAAAATTCTTGTTACCA+TGG - Chr7:74995021-74995040 MsG0780040254.01.T01:CDS 30.0%
CACAACAACACAAGAAATAA+AGG + Chr7:74994325-74994344 None:intergenic 30.0%
CAGATTCATAGCAATTCAAA+TGG - Chr7:74994672-74994691 MsG0780040254.01.T01:CDS 30.0%
CCAATAACCATAGAAACAAA+AGG + Chr7:74994092-74994111 None:intergenic 30.0%
GATGAAGTTGAAAGTGATTA+CGG - Chr7:74994576-74994595 MsG0780040254.01.T01:CDS 30.0%
TAGGTATCACAATAGATGAA+GGG + Chr7:74995337-74995356 None:intergenic 30.0%
TATCTCTTGTTACATCTACT+TGG - Chr7:74995303-74995322 MsG0780040254.01.T01:CDS 30.0%
TTCAATACAGTTGTTGGATT+GGG - Chr7:74995278-74995297 MsG0780040254.01.T01:CDS 30.0%
TTTCAGCTCAAGAATTAGTA+GGG - Chr7:74995084-74995103 MsG0780040254.01.T01:CDS 30.0%
! AATAGCAATTTTCACAACTG+AGG - Chr7:74994986-74995005 MsG0780040254.01.T01:CDS 30.0%
! ACTTGGTTCTCTTCAATTTA+AGG - Chr7:74995514-74995533 MsG0780040254.01.T01:CDS 30.0%
! AGCCTATTAGTTTATGGAAT+TGG - Chr7:74994936-74994955 MsG0780040254.01.T01:CDS 30.0%
! ATAATCTCTCCAAAGTTTTG+AGG - Chr7:74994166-74994185 MsG0780040254.01.T01:CDS 30.0%
! ATTGAAGATTTTTCACAGCA+AGG + Chr7:74994735-74994754 None:intergenic 30.0%
! CATGGTAACAAGAATTTTCT+TGG + Chr7:74995023-74995042 None:intergenic 30.0%
! CATTTTTCTTCACAAACAAC+AGG + Chr7:74994819-74994838 None:intergenic 30.0%
! CTGTTGTTTGTGAAGAAAAA+TGG - Chr7:74994817-74994836 MsG0780040254.01.T01:CDS 30.0%
! CTTGTTTCTTTCAAAGGTAA+TGG - Chr7:74994258-74994277 MsG0780040254.01.T01:CDS 30.0%
! CTTTATTTCTTGTGTTGTTG+TGG - Chr7:74994323-74994342 MsG0780040254.01.T01:CDS 30.0%
! GCCTATTAGTTTATGGAATT+GGG - Chr7:74994937-74994956 MsG0780040254.01.T01:CDS 30.0%
! TCATCAAGCCTATTAGTTTA+TGG - Chr7:74994930-74994949 MsG0780040254.01.T01:CDS 30.0%
! TTTGGTTGTTGGATTGATTT+GGG - Chr7:74995388-74995407 MsG0780040254.01.T01:CDS 30.0%
!! ACTGTTAATCCAAGTATTGA+AGG + Chr7:74995146-74995165 None:intergenic 30.0%
!! ATTGGTTCTCTTCTATCTTT+TGG - Chr7:74994107-74994126 MsG0780040254.01.T01:CDS 30.0%
!! TAACAATGGCTTTAAATGGT+GGG - Chr7:74995207-74995226 MsG0780040254.01.T01:CDS 30.0%
!! TGGTTTTTGTTTGATGTATG+TGG - Chr7:74994488-74994507 MsG0780040254.01.T01:CDS 30.0%
!! TTAACAATGGCTTTAAATGG+TGG - Chr7:74995206-74995225 MsG0780040254.01.T01:CDS 30.0%
!! TTTTGGTTGTTGGATTGATT+TGG - Chr7:74995387-74995406 MsG0780040254.01.T01:CDS 30.0%
!!! CACTTTTATTAGCTTTCCTT+TGG - Chr7:74994877-74994896 MsG0780040254.01.T01:CDS 30.0%
!!! CCTTTTGTTTCTATGGTTAT+TGG - Chr7:74994089-74994108 MsG0780040254.01.T01:CDS 30.0%
ACAGGAATTGTTAATCTCCT+AGG + Chr7:74994801-74994820 None:intergenic 35.0%
ACCTAGAGATCCATATTTGT+GGG - Chr7:74995352-74995371 MsG0780040254.01.T01:CDS 35.0%
ATGAAGCTTGATGCAATGTT+AGG - Chr7:74995437-74995456 MsG0780040254.01.T01:CDS 35.0%
ATTGGATTCAACACTGTTCT+TGG - Chr7:74994291-74994310 MsG0780040254.01.T01:CDS 35.0%
CAAAGTGAAAAACATGCGTT+TGG + Chr7:74993782-74993801 None:intergenic 35.0%
CCAACAACTGTATTGAAGAT+AGG + Chr7:74995275-74995294 None:intergenic 35.0%
CCTATCTTCAATACAGTTGT+TGG - Chr7:74995272-74995291 MsG0780040254.01.T01:CDS 35.0%
CTAGGTATCACAATAGATGA+AGG + Chr7:74995338-74995357 None:intergenic 35.0%
CTTCAATACAGTTGTTGGAT+TGG - Chr7:74995277-74995296 MsG0780040254.01.T01:CDS 35.0%
GATTTAGATGTTCCTCTACT+TGG - Chr7:74994627-74994646 MsG0780040254.01.T01:CDS 35.0%
GGTGTTAATCCTTCAATACT+TGG - Chr7:74995134-74995153 MsG0780040254.01.T01:CDS 35.0%
GTCACATCTAGCAAAAGAAA+AGG - Chr7:74994531-74994550 MsG0780040254.01.T01:CDS 35.0%
GTTTCACTTGGTTTCATATG+TGG - Chr7:74995113-74995132 MsG0780040254.01.T01:CDS 35.0%
TACCTAGAGATCCATATTTG+TGG - Chr7:74995351-74995370 MsG0780040254.01.T01:CDS 35.0%
TATGGAATTGGGTTATTGGT+TGG - Chr7:74994948-74994967 MsG0780040254.01.T01:CDS 35.0%
TCTGAGAAAAACGTGTTCAT+AGG + Chr7:74993863-74993882 None:intergenic 35.0%
TGGATTAACAGTACTTGCTT+GGG - Chr7:74995154-74995173 MsG0780040254.01.T01:CDS 35.0%
TGGTGAAATCAATGTTGTTG+TGG - Chr7:74994461-74994480 MsG0780040254.01.T01:CDS 35.0%
TTCTCCATAAAACCAAGTAG+AGG + Chr7:74994642-74994661 None:intergenic 35.0%
TTGGAGAGATTATCAAGAGA+AGG + Chr7:74994159-74994178 None:intergenic 35.0%
TTGGATTAACAGTACTTGCT+TGG - Chr7:74995153-74995172 MsG0780040254.01.T01:CDS 35.0%
TTGTTCAGTGTCTTCATCAA+TGG - Chr7:74994441-74994460 MsG0780040254.01.T01:CDS 35.0%
TTTCCTTGTATGGAATCCAA+AGG + Chr7:74994896-74994915 None:intergenic 35.0%
TTTCCTTTGGATTCCATACA+AGG - Chr7:74994890-74994909 MsG0780040254.01.T01:CDS 35.0%
! AAAAGGGTATGACCCAATAA+AGG + Chr7:74994075-74994094 None:intergenic 35.0%
! AAAGGGTATGACCCAATAAA+GGG + Chr7:74994074-74994093 None:intergenic 35.0%
! ACCTTTGAAAGAAACAAGTG+TGG + Chr7:74994256-74994275 None:intergenic 35.0%
! CACAAGGGTTGTTTGATTTA+AGG + Chr7:74993996-74994015 None:intergenic 35.0%
! GAGAAACTGTTTTCCTTGTA+TGG + Chr7:74994906-74994925 None:intergenic 35.0%
! GGTAACAAGAATTTTCTTGG+AGG + Chr7:74995020-74995039 None:intergenic 35.0%
!!! ACATTGGCATTTTTGGTTGT+TGG - Chr7:74995377-74995396 MsG0780040254.01.T01:CDS 35.0%
!!! CTACTTGGTTTTATGGAGAA+GGG - Chr7:74994642-74994661 MsG0780040254.01.T01:CDS 35.0%
!!! GTCATACCCTTTTGTTTCTA+TGG - Chr7:74994082-74994101 MsG0780040254.01.T01:CDS 35.0%
!!! TCTACTTGGTTTTATGGAGA+AGG - Chr7:74994641-74994660 MsG0780040254.01.T01:CDS 35.0%
!!! TGTTCCTCTACTTGGTTTTA+TGG - Chr7:74994635-74994654 MsG0780040254.01.T01:CDS 35.0%
AAGCTTGATGCAATGTTAGG+TGG - Chr7:74995440-74995459 MsG0780040254.01.T01:CDS 40.0%
ATCAATGTTGTTGTGGCAGT+TGG - Chr7:74994468-74994487 MsG0780040254.01.T01:CDS 40.0%
CTTAGGCTTACTCAAACACT+TGG - Chr7:74995497-74995516 MsG0780040254.01.T01:CDS 40.0%
GAATTGTTAATCTCCTAGGC+AGG + Chr7:74994797-74994816 None:intergenic 40.0%
GATTAACAGTACTTGCTTGG+GGG - Chr7:74995156-74995175 MsG0780040254.01.T01:CDS 40.0%
GATTCAAGAAGTCATGGCAA+TGG - Chr7:74994600-74994619 MsG0780040254.01.T01:CDS 40.0%
GGATTAACAGTACTTGCTTG+GGG - Chr7:74995155-74995174 MsG0780040254.01.T01:CDS 40.0%
TACGGTGATTCAAGAAGTCA+TGG - Chr7:74994594-74994613 MsG0780040254.01.T01:CDS 40.0%
TCCATATTTGTGGGAGACAT+TGG - Chr7:74995361-74995380 MsG0780040254.01.T01:CDS 40.0%
TCCCACAAATATGGATCTCT+AGG + Chr7:74995356-74995375 None:intergenic 40.0%
TGGTGAAAGCCTCAAAACTT+TGG + Chr7:74994178-74994197 None:intergenic 40.0%
! GCCACACTTGTTTCTTTCAA+AGG - Chr7:74994252-74994271 MsG0780040254.01.T01:CDS 40.0%
! GTAGGGTTGTTAGTTTCACT+TGG - Chr7:74995101-74995120 MsG0780040254.01.T01:CDS 40.0%
!! GCAATTTCAGGTTGTTATGC+TGG - Chr7:74995248-74995267 MsG0780040254.01.T01:CDS 40.0%
!! TTCAAAGGTAATGGGACACA+AGG - Chr7:74994267-74994286 MsG0780040254.01.T01:CDS 40.0%
!!! TGGTTTTATGGAGAAGGGAA+TGG - Chr7:74994647-74994666 MsG0780040254.01.T01:CDS 40.0%
AACAACCCTTGTGTCACACA+AGG - Chr7:74994003-74994022 MsG0780040254.01.T01:CDS 45.0%
AATCTCCTAGGCAGGTAAAG+AGG + Chr7:74994789-74994808 None:intergenic 45.0%
ACTCTTCTCTCTCTTGGGAA+TGG - Chr7:74994213-74994232 MsG0780040254.01.T01:CDS 45.0%
AGAGTGACACCAGCAATAGT+TGG + Chr7:74994198-74994217 None:intergenic 45.0%
AGGCTTTCACCAACTATTGC+TGG - Chr7:74994186-74994205 MsG0780040254.01.T01:CDS 45.0%
ATATGCCTCTTTACCTGCCT+AGG - Chr7:74994781-74994800 MsG0780040254.01.T01:CDS 45.0%
CTTGATGCAATGTTAGGTGG+AGG - Chr7:74995443-74995462 MsG0780040254.01.T01:CDS 45.0%
CTTGCTTGGGGGAATTCAAT+TGG - Chr7:74995167-74995186 MsG0780040254.01.T01:CDS 45.0%
GCCAATGTCTCCCACAAATA+TGG + Chr7:74995365-74995384 None:intergenic 45.0%
GGATTCAACACTGTTCTTGG+TGG - Chr7:74994294-74994313 MsG0780040254.01.T01:CDS 45.0%
GGGGCTCAAATAGCAATTTC+AGG - Chr7:74995236-74995255 MsG0780040254.01.T01:CDS 45.0%
GGTTTGTGATGAGTGTGACA+TGG - Chr7:74995054-74995073 MsG0780040254.01.T01:CDS 45.0%
! GTGGGAGACATTGGCATTTT+TGG - Chr7:74995370-74995389 MsG0780040254.01.T01:CDS 45.0%
! GTGTCACTCTTCTCTCTCTT+GGG - Chr7:74994208-74994227 MsG0780040254.01.T01:CDS 45.0%
!! ACATAGCCTTGTGTGACACA+AGG + Chr7:74994012-74994031 None:intergenic 45.0%
!! CATAGCCTTGTGTGACACAA+GGG + Chr7:74994011-74994030 None:intergenic 45.0%
! TGTTACCATGGCTAGCTGCA+GGG - Chr7:74995033-74995052 MsG0780040254.01.T01:CDS 50.0%
! TTGTTACCATGGCTAGCTGC+AGG - Chr7:74995032-74995051 MsG0780040254.01.T01:CDS 50.0%
!! ATTGCTATTTGAGCCCCCTC+TGG + Chr7:74995233-74995252 None:intergenic 50.0%
!! CTCTGGTGTCACTGATGATG+AGG - Chr7:74993921-74993940 MsG0780040254.01.T01:CDS 50.0%
!! CTTTAAATGGTGGGCCAGAG+GGG - Chr7:74995216-74995235 MsG0780040254.01.T01:CDS 50.0%
!! GCTTTAAATGGTGGGCCAGA+GGG - Chr7:74995215-74995234 MsG0780040254.01.T01:CDS 50.0%
!! GGTAATGGGACACAAGGCAT+TGG - Chr7:74994273-74994292 MsG0780040254.01.T01:CDS 50.0%
!! GGTGTCACTCTTCTCTCTCT+TGG - Chr7:74994207-74994226 MsG0780040254.01.T01:CDS 50.0%
!! TTTAAATGGTGGGCCAGAGG+GGG - Chr7:74995217-74995236 MsG0780040254.01.T01:CDS 50.0%
ACAAACCCTGCAGCTAGCCA+TGG + Chr7:74995041-74995060 None:intergenic 55.0%
!! GGCTTTAAATGGTGGGCCAG+AGG - Chr7:74995214-74995233 MsG0780040254.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 74993769 74995550 74993769 ID=MsG0780040254.01;Name=MsG0780040254.01
Chr7 mRNA 74993769 74995550 74993769 ID=MsG0780040254.01.T01;Parent=MsG0780040254.01;Name=MsG0780040254.01.T01;_AED=0.15;_eAED=0.15;_QI=0|-1|0|1|-1|1|1|0|593
Chr7 exon 74993769 74995550 74993769 ID=MsG0780040254.01.T01:exon:14161;Parent=MsG0780040254.01.T01
Chr7 CDS 74993769 74995550 74993769 ID=MsG0780040254.01.T01:cds;Parent=MsG0780040254.01.T01
Gene Sequence

>MsG0780040254.01.T01

ATGTCACAATCCAAACGCATGTTTTTCACTTTGTTCTTAAACACATCTTTCCTTTTGTTGTTTTGTGTTTTTCTTGTTCTTCACTTTCAATCCTATGAACACGTTTTTCTCAGAAACAAAAGCAAAACCAACAATAATAACAGAAACTTTGTCTCTGGTGTCACTGATGATGAGGATTGTAAAAGTTTTCATAGCTTAAGTGATTATAAAGCTAAGTGCTTTTACCTTAAATCAAACAACCCTTGTGTCACACAAGGCTATGTTGATTACCTTTACATTTTCTATTGCAAAATTGGAAATTTCCCTTTATTGGGTCATACCCTTTTGTTTCTATGGTTATTGGTTCTCTTCTATCTTTTGGCTAATACAGCTTCTGAGTATTTTTGTCCTTCTCTTGATAATCTCTCCAAAGTTTTGAGGCTTTCACCAACTATTGCTGGTGTCACTCTTCTCTCTCTTGGGAATGGTGCTAATGATGTTTTTGCCACACTTGTTTCTTTCAAAGGTAATGGGACACAAGGCATTGGATTCAACACTGTTCTTGGTGGTGCTTCCTTTATTTCTTGTGTTGTTGTGGGAGTTATAAGTATTTCAGTTAGACATAGAGAGATTCGTGTTCAAAAATCTGCTTTGATAAGAGATGTTTGTTTTCTTCTGTTTGTTCTTGTTTGTTTGTTCAGTGTCTTCATCAATGGTGAAATCAATGTTGTTGTGGCAGTTGGTTTTTGTTTGATGTATGTGGTTTATGTTGCTATTGTTTATGTCACATCTAGCAAAAGAAAAGGTGTTTGTGATGAAGATGATGTTGATGAAGTTGAAAGTGATTACGGTGATTCAAGAAGTCATGGCAATGGCAATGATTTAGATGTTCCTCTACTTGGTTTTATGGAGAAGGGAATGGTTCAGATTCATAGCAATTCAAATGGACTTCAAGAATGTGAGTTCAAAATTGAGAAGAATATTCCTTGCTGTGAAAAATCTTCAATATGTAGAATGTTACTTTATGTTTTGGATATGCCTCTTTACCTGCCTAGGAGATTAACAATTCCTGTTGTTTGTGAAGAAAAATGGTCTAAAGCATATGCAGTTTCTTCAGCTATACTTTCACCACTTTTATTAGCTTTCCTTTGGATTCCATACAAGGAAAACAGTTTCTCCAATTCATCAAGCCTATTAGTTTATGGAATTGGGTTATTGGTTGGAATTATATTAGGAGTAATAGCAATTTTCACAACTGAGGCATCAAATCCTCCAAGAAAATTCTTGTTACCATGGCTAGCTGCAGGGTTTGTGATGAGTGTGACATGGAGTTACATTTCAGCTCAAGAATTAGTAGGGTTGTTAGTTTCACTTGGTTTCATATGTGGTGTTAATCCTTCAATACTTGGATTAACAGTACTTGCTTGGGGGAATTCAATTGGTGATTTAGTGACTAATTTAACAATGGCTTTAAATGGTGGGCCAGAGGGGGCTCAAATAGCAATTTCAGGTTGTTATGCTGGTCCTATCTTCAATACAGTTGTTGGATTGGGATTATCTCTTGTTACATCTACTTGGAGTGAGTACCCTTCATCTATTGTGATACCTAGAGATCCATATTTGTGGGAGACATTGGCATTTTTGGTTGTTGGATTGATTTGGGCACTTGTTGTTTTGATTAGAAGAGATATGAAGCTTGATGCAATGTTAGGTGGAGGACTATTAGCTATTTACTTCATTTCTCTTATTCTTAGGCTTACTCAAACACTTGGTTCTCTTCAATTTAAGGATATGTTAGTGTGA

Protein sequence

>MsG0780040254.01.T01

MSQSKRMFFTLFLNTSFLLLFCVFLVLHFQSYEHVFLRNKSKTNNNNRNFVSGVTDDEDCKSFHSLSDYKAKCFYLKSNNPCVTQGYVDYLYIFYCKIGNFPLLGHTLLFLWLLVLFYLLANTASEYFCPSLDNLSKVLRLSPTIAGVTLLSLGNGANDVFATLVSFKGNGTQGIGFNTVLGGASFISCVVVGVISISVRHREIRVQKSALIRDVCFLLFVLVCLFSVFINGEINVVVAVGFCLMYVVYVAIVYVTSSKRKGVCDEDDVDEVESDYGDSRSHGNGNDLDVPLLGFMEKGMVQIHSNSNGLQECEFKIEKNIPCCEKSSICRMLLYVLDMPLYLPRRLTIPVVCEEKWSKAYAVSSAILSPLLLAFLWIPYKENSFSNSSSLLVYGIGLLVGIILGVIAIFTTEASNPPRKFLLPWLAAGFVMSVTWSYISAQELVGLLVSLGFICGVNPSILGLTVLAWGNSIGDLVTNLTMALNGGPEGAQIAISGCYAGPIFNTVVGLGLSLVTSTWSEYPSSIVIPRDPYLWETLAFLVVGLIWALVVLIRRDMKLDAMLGGGLLAIYFISLILRLTQTLGSLQFKDMLV*