AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005493.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005493.01.T01 MTR_1g101440 97.598 333 8 0 1 333 1 333 0.0 667
MsG0180005493.01.T01 MTR_0086s0010 62.500 360 103 7 1 333 1 355 3.82e-138 396
MsG0180005493.01.T01 MTR_4g102740 48.239 284 116 5 18 301 28 280 1.38e-76 236
MsG0180005493.01.T01 MTR_2g018860 45.540 213 113 1 17 229 25 234 2.18e-62 199
MsG0180005493.01.T01 MTR_7g069610 40.909 220 128 2 6 224 2 220 4.05e-52 172
MsG0180005493.01.T01 MTR_4g017810 45.455 187 102 0 39 225 19 205 3.11e-49 165
MsG0180005493.01.T01 MTR_2g018860 43.646 181 100 1 51 229 12 192 3.99e-45 153
MsG0180005493.01.T01 MTR_6g022020 38.889 108 62 1 21 128 37 140 8.64e-23 93.2
MsG0180005493.01.T01 MTR_6g022040 37.963 108 62 1 21 128 35 137 2.02e-22 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005493.01.T01 AT5G07220 51.032 339 124 8 1 333 1 303 8.59e-106 312
MsG0180005493.01.T01 AT5G52060 52.778 324 121 9 22 333 39 342 1.80e-101 302
MsG0180005493.01.T01 AT5G62100 48.348 333 122 7 1 332 1 284 1.92e-99 295
MsG0180005493.01.T01 AT5G62100 46.802 344 122 8 1 332 1 295 1.07e-95 286
MsG0180005493.01.T01 AT5G62100 57.282 206 78 2 1 206 1 196 3.42e-79 241
MsG0180005493.01.T01 AT5G62100 56.522 207 80 2 1 207 1 197 1.44e-78 239
MsG0180005493.01.T01 AT5G62100 56.329 158 59 2 1 158 1 148 1.35e-57 183
MsG0180005493.01.T01 AT5G62100 56.329 158 59 2 1 158 1 148 1.35e-57 183
MsG0180005493.01.T01 AT3G51780 39.908 218 114 3 22 225 10 224 2.07e-44 153
MsG0180005493.01.T01 AT5G14360 36.364 110 65 1 21 130 47 151 1.80e-21 89.7
MsG0180005493.01.T01 AT5G40630 34.545 110 69 2 21 130 55 161 4.14e-20 86.3

Find 117 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAATACATTTGATATTT+TGG 0.031025 1:+92445255 MsG0180005493.01.T01:three_prime_UTR
TCATAAATTACAACCAAATT+TGG 0.153385 1:+92444811 MsG0180005493.01.T01:CDS
ATTAGAGTTAAGGTTAAATT+TGG 0.209267 1:+92443191 MsG0180005493.01.T01:CDS
GTGATTGTGTGGATGTGTTT+TGG 0.216381 1:+92445066 MsG0180005493.01.T01:three_prime_UTR
ACCGGTGCCGGAAAAGTTTA+TGG 0.223086 1:-92442729 None:intergenic
TTTACATCATCGGCAATAAA+TGG 0.236093 1:+92445177 MsG0180005493.01.T01:three_prime_UTR
TGTGATTGTTGCTCCAAATT+TGG 0.239886 1:-92444824 None:intergenic
TCCAAAATATCAAATGTATT+TGG 0.249866 1:-92445256 None:intergenic
CAAAGATCTACATCTTGTTT+TGG 0.296970 1:+92443013 MsG0180005493.01.T01:five_prime_UTR
TTGAAAATTAAGAATTCTAA+TGG 0.299595 1:+92444704 MsG0180005493.01.T01:CDS
AAGTTGTAGTTACTACAAAA+TGG 0.317039 1:+92444918 MsG0180005493.01.T01:CDS
TTTGTTGAGGCTTCTTCTTT+GGG 0.318006 1:-92444736 None:intergenic
CAACTAGAAGGCATGTCTAT+TGG 0.328595 1:+92444785 MsG0180005493.01.T01:CDS
ATAAATGGGGTTGCTATGAT+AGG 0.340960 1:+92445192 MsG0180005493.01.T01:three_prime_UTR
AAAATGTTAACCGGTCCAAC+TGG 0.346168 1:+92443496 MsG0180005493.01.T01:CDS
TTGGAAGTAGATAGGCTTGC+AGG 0.354563 1:+92443715 MsG0180005493.01.T01:CDS
CGAGTCTCGATCCGAGTCTA+AGG 0.358675 1:-92443153 None:intergenic
GAAAGTACAGAAAATCAAAA+TGG 0.359392 1:-92442416 None:intergenic
GCTGAAGTGACAGGAATTAA+TGG 0.377943 1:-92444962 None:intergenic
AACTAGAAGGCATGTCTATT+GGG 0.380751 1:+92444786 MsG0180005493.01.T01:CDS
CCTTCTAGTTGCTCATCAAT+TGG 0.382641 1:-92444773 None:intergenic
CAGTTCATCCCAAGTTCAAA+TGG 0.384999 1:+92445014 MsG0180005493.01.T01:CDS
AAGGCATTTCTTGACATAGT+AGG 0.386721 1:+92443571 MsG0180005493.01.T01:CDS
AAAGATCGCCGGACGGTAAC+CGG 0.396327 1:-92442747 None:intergenic
CCACTCCAAACCTCTAGGTT+CGG 0.402186 1:-92443093 None:intergenic
TCCACCGACAATTAGAGTTA+AGG 0.402326 1:+92443181 MsG0180005493.01.T01:CDS
TTACATCATCGGCAATAAAT+GGG 0.403982 1:+92445178 MsG0180005493.01.T01:three_prime_UTR
AGTAGATAGGCTTGCAGGGC+AGG 0.406809 1:+92443720 MsG0180005493.01.T01:CDS
TACCTCTTCTCTTGAGCAAT+AGG 0.407029 1:-92443631 None:intergenic
GGTTCCCGAACCTAGAGGTT+TGG 0.408188 1:+92443088 MsG0180005493.01.T01:CDS
ACAAAAGTATGTTGAAACTT+TGG 0.410750 1:+92444676 MsG0180005493.01.T01:CDS
AAATTAGCTTGGAAGTAGAT+AGG 0.412929 1:+92443707 MsG0180005493.01.T01:CDS
CGCCGGACGGTAACCGGTGC+CGG 0.420991 1:-92442741 None:intergenic
GAAGTGTTCCCATTTGAACT+TGG 0.421460 1:-92445023 None:intergenic
GTTAGTTCACAAGCAACATT+TGG 0.424915 1:+92443236 MsG0180005493.01.T01:CDS
CCAATTGATGAGCAACTAGA+AGG 0.428546 1:+92444773 MsG0180005493.01.T01:CDS
TTAGAGGAATCAATGGCGTT+TGG 0.433140 1:-92442835 None:intergenic
TAAAGATAAATCAAAGTTAG+TGG 0.440071 1:+92443597 MsG0180005493.01.T01:CDS
GATGTAAATGACAGACTAAA+GGG 0.444896 1:-92445162 None:intergenic
AAGAACGTGACGAATCATAA+TGG 0.447206 1:+92443059 MsG0180005493.01.T01:CDS
CACTCCAAACCTCTAGGTTC+GGG 0.452343 1:-92443092 None:intergenic
TAAATCAAAGTTAGTGGTGA+TGG 0.454330 1:+92443603 MsG0180005493.01.T01:CDS
GATGAGACCAGGAGGCTTGT+TGG 0.454427 1:+92443118 MsG0180005493.01.T01:CDS
GCTTAAGTTGGATGGTATAG+TGG 0.470152 1:+92443919 MsG0180005493.01.T01:CDS
ATCTATTTCAGAAATTAGCT+TGG 0.470708 1:+92443696 MsG0180005493.01.T01:CDS
TTAACCTTAACTCTAATTGT+CGG 0.472025 1:-92443185 None:intergenic
TGCTCAAGAGAAGAGGTACT+TGG 0.472792 1:+92443636 MsG0180005493.01.T01:CDS
GGGATGAACTGACTTATTAG+TGG 0.486452 1:-92445002 None:intergenic
TAGTCTGTCATTTACATCAT+CGG 0.489273 1:+92445167 MsG0180005493.01.T01:three_prime_UTR
GATGAATCAGTTGCTTAAGT+TGG 0.489833 1:+92443907 MsG0180005493.01.T01:CDS
AGTTGTAGTTACTACAAAAT+GGG 0.490238 1:+92444919 MsG0180005493.01.T01:CDS
TTCCGGCACCGGTTACCGTC+CGG 0.491128 1:+92442739 MsG0180005493.01.T01:five_prime_UTR
CAATCACAAAGGATCTCAAA+CGG 0.493312 1:+92444839 MsG0180005493.01.T01:CDS
GTACTATGAAGCAAAATGTA+TGG 0.496289 1:-92442629 None:intergenic
CGTTGAACCAACAAGCCTCC+TGG 0.506657 1:-92443125 None:intergenic
AAGTGTTCCCATTTGAACTT+GGG 0.507977 1:-92445022 None:intergenic
GACGAATCATAATGGAGGTT+CGG 0.509154 1:+92443067 MsG0180005493.01.T01:CDS
TTTCTCTCTTGAAGTTCTGG+AGG 0.513400 1:-92442462 None:intergenic
AATCACAAAGGATCTCAAAC+GGG 0.514157 1:+92444840 MsG0180005493.01.T01:CDS
AAAGAATATAAAGATGGAAA+GGG 0.514647 1:+92443666 MsG0180005493.01.T01:CDS
GTGTCTGTATTCGTGTGGAT+TGG 0.515990 1:+92442920 MsG0180005493.01.T01:five_prime_UTR
ACTAACGTTGACTTCATGAT+AGG 0.517797 1:-92443219 None:intergenic
GAAAGAATATAAAGATGGAA+AGG 0.518162 1:+92443665 MsG0180005493.01.T01:CDS
GTGGTGTATCCCAGTTGGAC+CGG 0.518541 1:-92443506 None:intergenic
AATCAGTTGCTTAAGTTGGA+TGG 0.521756 1:+92443911 MsG0180005493.01.T01:CDS
AATGAGAAAGAATATAAAGA+TGG 0.522459 1:+92443660 MsG0180005493.01.T01:CDS
TGGATGGTATAGTGGCTGAT+GGG 0.523352 1:+92443927 MsG0180005493.01.T01:CDS
AAAATATCAAATGTATTTGG+AGG 0.525365 1:-92445253 None:intergenic
TCTAGTTGCTCATCAATTGG+AGG 0.528067 1:-92444770 None:intergenic
GAATTGAAGAAAATGTTAAC+CGG 0.528236 1:+92443487 MsG0180005493.01.T01:CDS
CTCGATCCGAGTCTAAGGTT+CGG 0.528564 1:-92443148 None:intergenic
TGATGTAAATGACAGACTAA+AGG 0.528805 1:-92445163 None:intergenic
CTCGAAACAATAATTAGTAA+AGG 0.528826 1:+92443839 MsG0180005493.01.T01:CDS
TAATATGAGATATGAGATAG+AGG 0.530055 1:-92442575 None:intergenic
CCGAACCTAGAGGTTTGGAG+TGG 0.531731 1:+92443093 MsG0180005493.01.T01:CDS
TGAAGTTCTGGAGGAATCGA+TGG 0.537926 1:-92442453 None:intergenic
ACCTTAACTCTAATTGTCGG+TGG 0.538745 1:-92443182 None:intergenic
CTTAGACTCGGATCGAGACT+CGG 0.539623 1:+92443154 MsG0180005493.01.T01:CDS
TGGATTTATACGTGAGTAGG+AGG 0.542356 1:-92442609 None:intergenic
AAACAAGGAGAGGGATTCAA+AGG 0.544060 1:+92443552 MsG0180005493.01.T01:CDS
TTGGAGTGGGAGATGAGACC+AGG 0.544656 1:+92443107 MsG0180005493.01.T01:CDS
TCTTGGTGGTGTATCCCAGT+TGG 0.549913 1:-92443511 None:intergenic
GATGAGGATGCTGAAGTGAC+AGG 0.550910 1:-92444971 None:intergenic
TAAATGGGGTTGCTATGATA+GGG 0.551338 1:+92445193 MsG0180005493.01.T01:three_prime_UTR
GAAACAATAATTAGTAAAGG+TGG 0.554611 1:+92443842 MsG0180005493.01.T01:CDS
AGGATGGCAGCATAGTTAGC+TGG 0.560871 1:+92442371 MsG0180005493.01.T01:five_prime_UTR
TGGAAGTAGATAGGCTTGCA+GGG 0.562410 1:+92443716 MsG0180005493.01.T01:CDS
AGTTCATCCCAAGTTCAAAT+GGG 0.563038 1:+92445015 MsG0180005493.01.T01:CDS
AAACAATAATTAGTAAAGGT+GGG 0.565385 1:+92443843 MsG0180005493.01.T01:CDS
TTGGATGGTATAGTGGCTGA+TGG 0.567402 1:+92443926 MsG0180005493.01.T01:CDS
GGATGGTATAGTGGCTGATG+GGG 0.575853 1:+92443928 MsG0180005493.01.T01:CDS
AAAATCTGAAATAATTTGGG+AGG 0.577119 1:-92442551 None:intergenic
AACGTTGACTTCATGATAGG+TGG 0.581728 1:-92443216 None:intergenic
ATCTCCCACTCCAAACCTCT+AGG 0.584464 1:-92443098 None:intergenic
GTATGGATTTATACGTGAGT+AGG 0.587242 1:-92442612 None:intergenic
TAAATTGCAGAGGAAAATGC+AGG 0.597959 1:+92443955 MsG0180005493.01.T01:CDS
ATCAAAGTTAGTGGTGATGG+AGG 0.599290 1:+92443606 MsG0180005493.01.T01:CDS
TCTGAGGTAGAATTCGTAGA+GGG 0.608688 1:-92444896 None:intergenic
ATCCTATTGCTCAAGAGAAG+AGG 0.610825 1:+92443629 MsG0180005493.01.T01:CDS
AAATCTGAAATAATTTGGGA+GGG 0.613371 1:-92442550 None:intergenic
TACATCATCGGCAATAAATG+GGG 0.614606 1:+92445179 MsG0180005493.01.T01:three_prime_UTR
AAATGTTAACCGGTCCAACT+GGG 0.615599 1:+92443497 MsG0180005493.01.T01:CDS
TGTAGTAACTACAACTTCTG+AGG 0.617406 1:-92444912 None:intergenic
TTAACTCTAATTGTCGGTGG+AGG 0.619157 1:-92443179 None:intergenic
GGTTCGGTTCCCGAACCTAG+AGG 0.622759 1:+92443083 MsG0180005493.01.T01:CDS
AAAATTAAGAATTCTAATGG+AGG 0.625206 1:+92444707 MsG0180005493.01.T01:CDS
CGAACCTAGAGGTTTGGAGT+GGG 0.637249 1:+92443094 MsG0180005493.01.T01:CDS
GTGCAATGTATGTGATTGTG+TGG 0.641680 1:+92445055 MsG0180005493.01.T01:three_prime_UTR
ATGGGGATGTTAAATTGCAG+AGG 0.645911 1:+92443945 MsG0180005493.01.T01:CDS
TGTATAAGAAGAGATTTGGG+TGG 0.649734 1:+92442969 MsG0180005493.01.T01:five_prime_UTR
TTCTGAGGTAGAATTCGTAG+AGG 0.661653 1:-92444897 None:intergenic
ATTAGTGGATGAGCTTGATG+AGG 0.669613 1:-92444987 None:intergenic
ATTTGGAGCAACAATCACAA+AGG 0.670531 1:+92444828 MsG0180005493.01.T01:CDS
AACGTGACGAATCATAATGG+AGG 0.690876 1:+92443062 MsG0180005493.01.T01:CDS
TCAACGCCGAACCTTAGACT+CGG 0.694481 1:+92443142 MsG0180005493.01.T01:CDS
GAGTGGGAGATGAGACCAGG+AGG 0.701762 1:+92443110 MsG0180005493.01.T01:CDS
GAAGTGACAGGAATTAATGG+TGG 0.757122 1:-92444959 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATAATAATAATAAA+AGG - Chr1:92443278-92443297 None:intergenic 0.0%
!! TAATAATAATAATAATAAAA+GGG - Chr1:92443277-92443296 None:intergenic 0.0%
!! AGACAAAAAAAAAAAAAAAT+TGG - Chr1:92444222-92444241 None:intergenic 10.0%
!! ATAATAATAATAATAAAAGG+GGG - Chr1:92443275-92443294 None:intergenic 10.0%
!! ATTAATAAAATTAGATGTTA+GGG - Chr1:92444159-92444178 None:intergenic 10.0%
!! AAAAATTATGACATCTAATT+TGG + Chr1:92444085-92444104 MsG0180005493.01.T01:intron 15.0%
!! ATATTTAATGCTTGAATAAT+TGG + Chr1:92443776-92443795 MsG0180005493.01.T01:intron 15.0%
!! CATTAATAAAATTAGATGTT+AGG - Chr1:92444160-92444179 None:intergenic 15.0%
!! GATTAAATAAATCATTTATC+TGG + Chr1:92443371-92443390 MsG0180005493.01.T01:intron 15.0%
!! TAATAATAATAATAAAAGGG+GGG - Chr1:92443274-92443293 None:intergenic 15.0%
!! TTAAATTAGGTCATTTAAAA+TGG - Chr1:92444258-92444277 None:intergenic 15.0%
!! TTGAAAATTAAGAATTCTAA+TGG + Chr1:92444704-92444723 MsG0180005493.01.T01:CDS 15.0%
!!! ACATTCATTAATGATTTTAT+TGG + Chr1:92444596-92444615 MsG0180005493.01.T01:intron 15.0%
!!! ATAATGCACATTTTTAAATT+AGG - Chr1:92444271-92444290 None:intergenic 15.0%
!!! GATATTTAAAATCAAAATTG+TGG + Chr1:92444416-92444435 MsG0180005493.01.T01:intron 15.0%
!!! TAAATTAGGTCATTTAAAAT+GGG - Chr1:92444257-92444276 None:intergenic 15.0%
!!! TATAAAATATTTTTTGGTCT+TGG - Chr1:92443531-92443550 None:intergenic 15.0%
!!! TTTTTTTTTTATGATAAGGT+TGG + Chr1:92443748-92443767 MsG0180005493.01.T01:intron 15.0%
!! AAAAAACAATTCCAATAATG+AGG - Chr1:92442496-92442515 None:intergenic 20.0%
!! AAAAACAAATTCCTCATTAT+TGG + Chr1:92442482-92442501 MsG0180005493.01.T01:five_prime_UTR 20.0%
!! AAAAATCAATCATTCGATAT+CGG - Chr1:92443418-92443437 None:intergenic 20.0%
!! AAAATATCAAATGTATTTGG+AGG - Chr1:92445256-92445275 None:intergenic 20.0%
!! AAAATTAAGAATTCTAATGG+AGG + Chr1:92444707-92444726 MsG0180005493.01.T01:CDS 20.0%
!! AAACAATAATTAGTAAAGGT+GGG + Chr1:92443843-92443862 MsG0180005493.01.T01:CDS 20.0%
!! AAAGAATATAAAGATGGAAA+GGG + Chr1:92443666-92443685 MsG0180005493.01.T01:CDS 20.0%
!! AATAATAATAATAAAAGGGG+GGG - Chr1:92443273-92443292 None:intergenic 20.0%
!! AATGAGAAAGAATATAAAGA+TGG + Chr1:92443660-92443679 MsG0180005493.01.T01:CDS 20.0%
!! AATGTGAAGTCAAAAAAAAT+AGG - Chr1:92442523-92442542 None:intergenic 20.0%
!! ATTAGAGTTAAGGTTAAATT+TGG + Chr1:92443191-92443210 MsG0180005493.01.T01:CDS 20.0%
!! TAAAGATAAATCAAAGTTAG+TGG + Chr1:92443597-92443616 MsG0180005493.01.T01:CDS 20.0%
!! TCAACTATGTCATATAATAT+AGG + Chr1:92444458-92444477 MsG0180005493.01.T01:intron 20.0%
!! TCATAAATTACAACCAAATT+TGG + Chr1:92444811-92444830 MsG0180005493.01.T01:CDS 20.0%
!! TCCAAAATATCAAATGTATT+TGG - Chr1:92445259-92445278 None:intergenic 20.0%
!!! AGGAAAAATCTGAAATAATT+TGG - Chr1:92442558-92442577 None:intergenic 20.0%
!!! ATGGTAGTTAATAATTTTGA+AGG + Chr1:92444643-92444662 MsG0180005493.01.T01:intron 20.0%
!!! ATTTTATAAAAACAAGGAGA+GGG + Chr1:92443543-92443562 MsG0180005493.01.T01:CDS 20.0%
!!! GGAAAAATCTGAAATAATTT+GGG - Chr1:92442557-92442576 None:intergenic 20.0%
!!! TATTTTATAAAAACAAGGAG+AGG + Chr1:92443542-92443561 MsG0180005493.01.T01:CDS 20.0%
!!! TCCAAATACATTTGATATTT+TGG + Chr1:92445255-92445274 MsG0180005493.01.T01:three_prime_UTR 20.0%
!!! TTTTGTATAAGAAGAGATTT+GGG + Chr1:92442966-92442985 MsG0180005493.01.T01:five_prime_UTR 20.0%
!!! TTTTTGTATAAGAAGAGATT+TGG + Chr1:92442965-92442984 MsG0180005493.01.T01:five_prime_UTR 20.0%
!!! TTTTTTCTTTCCTTTTTTAG+AGG - Chr1:92442854-92442873 None:intergenic 20.0%
!!! TTTTTTTCCATAAACTTTTC+CGG + Chr1:92442722-92442741 MsG0180005493.01.T01:five_prime_UTR 20.0%
! AAGTTGTAGTTACTACAAAA+TGG + Chr1:92444918-92444937 MsG0180005493.01.T01:CDS 25.0%
! AGTTGTAGTTACTACAAAAT+GGG + Chr1:92444919-92444938 MsG0180005493.01.T01:CDS 25.0%
! ATCTATTTCAGAAATTAGCT+TGG + Chr1:92443696-92443715 MsG0180005493.01.T01:CDS 25.0%
! ATGAAAATAACATTTAGTCC+CGG + Chr1:92444114-92444133 MsG0180005493.01.T01:intron 25.0%
! ATGATATGAATTGCTTGATT+AGG + Chr1:92443808-92443827 MsG0180005493.01.T01:intron 25.0%
! CTCGAAACAATAATTAGTAA+AGG + Chr1:92443839-92443858 MsG0180005493.01.T01:CDS 25.0%
! GAAACAATAATTAGTAAAGG+TGG + Chr1:92443842-92443861 MsG0180005493.01.T01:CDS 25.0%
! GAAAGAATATAAAGATGGAA+AGG + Chr1:92443665-92443684 MsG0180005493.01.T01:CDS 25.0%
! GAAATGAATATAAAAACGTG+TGG - Chr1:92442397-92442416 None:intergenic 25.0%
! GAATTGAAGAAAATGTTAAC+CGG + Chr1:92443487-92443506 MsG0180005493.01.T01:CDS 25.0%
! GTACTATTTATCACTTGTTT+AGG + Chr1:92445311-92445330 MsG0180005493.01.T01:three_prime_UTR 25.0%
! TAATATGAGATATGAGATAG+AGG - Chr1:92442578-92442597 None:intergenic 25.0%
! TAGTACATTATTGCTTCTAA+TGG + Chr1:92444624-92444643 MsG0180005493.01.T01:intron 25.0%
! TCAATTTAAGAGGAAATCTA+AGG - Chr1:92444032-92444051 None:intergenic 25.0%
! TTAACCTTAACTCTAATTGT+CGG - Chr1:92443188-92443207 None:intergenic 25.0%
! TTTATTAATGTGTCCACTTT+AGG + Chr1:92444170-92444189 MsG0180005493.01.T01:intron 25.0%
!! AAAATCTGAAATAATTTGGG+AGG - Chr1:92442554-92442573 None:intergenic 25.0%
!! AAATCTGAAATAATTTGGGA+GGG - Chr1:92442553-92442572 None:intergenic 25.0%
!! ACAAAAGTATGTTGAAACTT+TGG + Chr1:92444676-92444695 MsG0180005493.01.T01:CDS 25.0%
!! CTTTCTCATTGATTAATGTT+TGG + Chr1:92443454-92443473 MsG0180005493.01.T01:intron 25.0%
!! GAAAGTACAGAAAATCAAAA+TGG - Chr1:92442419-92442438 None:intergenic 25.0%
!!! AAAATATTTTTTGGTCTTGG+TGG - Chr1:92443528-92443547 None:intergenic 25.0%
!!! CACTCTAAAATCAATTTAAG+AGG - Chr1:92444042-92444061 None:intergenic 25.0%
GAATACAGACACAAAAACAA+AGG - Chr1:92442912-92442931 None:intergenic 30.0%
GATGTAAATGACAGACTAAA+GGG - Chr1:92445165-92445184 None:intergenic 30.0%
GTACTATGAAGCAAAATGTA+TGG - Chr1:92442632-92442651 None:intergenic 30.0%
TAAATCAAAGTTAGTGGTGA+TGG + Chr1:92443603-92443622 MsG0180005493.01.T01:CDS 30.0%
TGATGTAAATGACAGACTAA+AGG - Chr1:92445166-92445185 None:intergenic 30.0%
TGTCATATAATATAGGACGA+CGG + Chr1:92444465-92444484 MsG0180005493.01.T01:intron 30.0%
TTACATCATCGGCAATAAAT+GGG + Chr1:92445178-92445197 MsG0180005493.01.T01:three_prime_UTR 30.0%
TTTACATCATCGGCAATAAA+TGG + Chr1:92445177-92445196 MsG0180005493.01.T01:three_prime_UTR 30.0%
! AAATTAGCTTGGAAGTAGAT+AGG + Chr1:92443707-92443726 MsG0180005493.01.T01:CDS 30.0%
! ACGTGAATACTAAGATTTTG+TGG + Chr1:92442784-92442803 MsG0180005493.01.T01:intron 30.0%
! TAGTCTGTCATTTACATCAT+CGG + Chr1:92445167-92445186 MsG0180005493.01.T01:three_prime_UTR 30.0%
! TCAGTACTTTCAGATTTTAC+AGG + Chr1:92442662-92442681 MsG0180005493.01.T01:five_prime_UTR 30.0%
! TTAGGTCATTTAAAATGGGA+CGG - Chr1:92444253-92444272 None:intergenic 30.0%
!! ATTAATGTTTGGTGTCATAG+GGG + Chr1:92443465-92443484 MsG0180005493.01.T01:intron 30.0%
!! CAAAGATCTACATCTTGTTT+TGG + Chr1:92443013-92443032 MsG0180005493.01.T01:five_prime_UTR 30.0%
!! GATTAATGTTTGGTGTCATA+GGG + Chr1:92443464-92443483 MsG0180005493.01.T01:intron 30.0%
!! TGATTAATGTTTGGTGTCAT+AGG + Chr1:92443463-92443482 MsG0180005493.01.T01:intron 30.0%
!!! AAGCTGAAACAAAGCTTTTT+TGG + Chr1:92442880-92442899 MsG0180005493.01.T01:five_prime_UTR 30.0%
!!! GGCAATTTTACTTTTTGTTG+AGG - Chr1:92444752-92444771 None:intergenic 30.0%
!!! TCCTTTTTTAGAGGAATCAA+TGG - Chr1:92442845-92442864 None:intergenic 30.0%
!!! TTTTGGGTTTGTTTTCTACT+TGG + Chr1:92445083-92445102 MsG0180005493.01.T01:three_prime_UTR 30.0%
AACATTTAGTCCCGGAAAAA+CGG + Chr1:92444122-92444141 MsG0180005493.01.T01:intron 35.0%
AAGAACGTGACGAATCATAA+TGG + Chr1:92443059-92443078 MsG0180005493.01.T01:CDS 35.0%
AAGTGTTCCCATTTGAACTT+GGG - Chr1:92445025-92445044 None:intergenic 35.0%
AATCACAAAGGATCTCAAAC+GGG + Chr1:92444840-92444859 MsG0180005493.01.T01:CDS 35.0%
AGTTCATCCCAAGTTCAAAT+GGG + Chr1:92445015-92445034 MsG0180005493.01.T01:CDS 35.0%
ATAAATGGGGTTGCTATGAT+AGG + Chr1:92445192-92445211 MsG0180005493.01.T01:three_prime_UTR 35.0%
ATATAATATAGGACGACGGA+GGG + Chr1:92444469-92444488 MsG0180005493.01.T01:intron 35.0%
CAATCACAAAGGATCTCAAA+CGG + Chr1:92444839-92444858 MsG0180005493.01.T01:CDS 35.0%
GATGAATCAGTTGCTTAAGT+TGG + Chr1:92443907-92443926 MsG0180005493.01.T01:CDS 35.0%
GTATGGATTTATACGTGAGT+AGG - Chr1:92442615-92442634 None:intergenic 35.0%
GTTAGTTCACAAGCAACATT+TGG + Chr1:92443236-92443255 MsG0180005493.01.T01:CDS 35.0%
TAAATGGGGTTGCTATGATA+GGG + Chr1:92445193-92445212 MsG0180005493.01.T01:three_prime_UTR 35.0%
TAAATTGCAGAGGAAAATGC+AGG + Chr1:92443955-92443974 MsG0180005493.01.T01:CDS 35.0%
TACATCATCGGCAATAAATG+GGG + Chr1:92445179-92445198 MsG0180005493.01.T01:three_prime_UTR 35.0%
TGTAGTAACTACAACTTCTG+AGG - Chr1:92444915-92444934 None:intergenic 35.0%
TGTATAAGAAGAGATTTGGG+TGG + Chr1:92442969-92442988 MsG0180005493.01.T01:five_prime_UTR 35.0%
TGTGATTGTTGCTCCAAATT+TGG - Chr1:92444827-92444846 None:intergenic 35.0%
TTTGTTGAGGCTTCTTCTTT+GGG - Chr1:92444739-92444758 None:intergenic 35.0%
! AACTAGAAGGCATGTCTATT+GGG + Chr1:92444786-92444805 MsG0180005493.01.T01:CDS 35.0%
! AAGATTTTGTGGTTCACGTT+GGG + Chr1:92442795-92442814 MsG0180005493.01.T01:intron 35.0%
! AAGGCATTTCTTGACATAGT+AGG + Chr1:92443571-92443590 MsG0180005493.01.T01:CDS 35.0%
! ATTTGGAGCAACAATCACAA+AGG + Chr1:92444828-92444847 MsG0180005493.01.T01:CDS 35.0%
! GTTTTTCTCTCTTGAAGTTC+TGG - Chr1:92442468-92442487 None:intergenic 35.0%
! TAAGATTTTGTGGTTCACGT+TGG + Chr1:92442794-92442813 MsG0180005493.01.T01:intron 35.0%
! TGATTGTGTGGATGTGTTTT+GGG + Chr1:92445067-92445086 MsG0180005493.01.T01:three_prime_UTR 35.0%
! TTTTGTTGAGGCTTCTTCTT+TGG - Chr1:92444740-92444759 None:intergenic 35.0%
! TTTTTGTGTCTGTATTCGTG+TGG + Chr1:92442915-92442934 MsG0180005493.01.T01:five_prime_UTR 35.0%
!! AATCAGTTGCTTAAGTTGGA+TGG + Chr1:92443911-92443930 MsG0180005493.01.T01:CDS 35.0%
!! ACTAACGTTGACTTCATGAT+AGG - Chr1:92443222-92443241 None:intergenic 35.0%
!! ACTATGTAATCCCGTTTTTC+CGG - Chr1:92444136-92444155 None:intergenic 35.0%
!! GCCATTGATTCCTCTAAAAA+AGG + Chr1:92442841-92442860 MsG0180005493.01.T01:five_prime_UTR 35.0%
AAAAAAGAAAGATCGCCGGA+CGG - Chr1:92442757-92442776 None:intergenic 40.0%
AAAATGTTAACCGGTCCAAC+TGG + Chr1:92443496-92443515 MsG0180005493.01.T01:CDS 40.0%
AAACAAGGAGAGGGATTCAA+AGG + Chr1:92443552-92443571 MsG0180005493.01.T01:CDS 40.0%
AAATGTTAACCGGTCCAACT+GGG + Chr1:92443497-92443516 MsG0180005493.01.T01:CDS 40.0%
AACGTGACGAATCATAATGG+AGG + Chr1:92443062-92443081 MsG0180005493.01.T01:CDS 40.0%
ACATTTAGTCCCGGAAAAAC+GGG + Chr1:92444123-92444142 MsG0180005493.01.T01:intron 40.0%
ACCTTAACTCTAATTGTCGG+TGG - Chr1:92443185-92443204 None:intergenic 40.0%
ATCCTATTGCTCAAGAGAAG+AGG + Chr1:92443629-92443648 MsG0180005493.01.T01:CDS 40.0%
ATGGGGATGTTAAATTGCAG+AGG + Chr1:92443945-92443964 MsG0180005493.01.T01:CDS 40.0%
CAGTTCATCCCAAGTTCAAA+TGG + Chr1:92445014-92445033 MsG0180005493.01.T01:CDS 40.0%
CATATAATATAGGACGACGG+AGG + Chr1:92444468-92444487 MsG0180005493.01.T01:intron 40.0%
CCAATTGATGAGCAACTAGA+AGG + Chr1:92444773-92444792 MsG0180005493.01.T01:CDS 40.0%
CCACAAAAAAGAAAGATCGC+CGG - Chr1:92442761-92442780 None:intergenic 40.0%
GAAGTGACAGGAATTAATGG+TGG - Chr1:92444962-92444981 None:intergenic 40.0%
GCTGAAGTGACAGGAATTAA+TGG - Chr1:92444965-92444984 None:intergenic 40.0%
GTGCAATGTATGTGATTGTG+TGG + Chr1:92445055-92445074 MsG0180005493.01.T01:three_prime_UTR 40.0%
TACCTCTTCTCTTGAGCAAT+AGG - Chr1:92443634-92443653 None:intergenic 40.0%
TCCACCGACAATTAGAGTTA+AGG + Chr1:92443181-92443200 MsG0180005493.01.T01:CDS 40.0%
TCTAGTTGCTCATCAATTGG+AGG - Chr1:92444773-92444792 None:intergenic 40.0%
TGGATTTATACGTGAGTAGG+AGG - Chr1:92442612-92442631 None:intergenic 40.0%
TTAACTCTAATTGTCGGTGG+AGG - Chr1:92443182-92443201 None:intergenic 40.0%
TTAGAGGAATCAATGGCGTT+TGG - Chr1:92442838-92442857 None:intergenic 40.0%
! ATTAGTGGATGAGCTTGATG+AGG - Chr1:92444990-92445009 None:intergenic 40.0%
! CAACTAGAAGGCATGTCTAT+TGG + Chr1:92444785-92444804 MsG0180005493.01.T01:CDS 40.0%
! CCTTCTAGTTGCTCATCAAT+TGG - Chr1:92444776-92444795 None:intergenic 40.0%
! GAAGTGTTCCCATTTGAACT+TGG - Chr1:92445026-92445045 None:intergenic 40.0%
! GACGAATCATAATGGAGGTT+CGG + Chr1:92443067-92443086 MsG0180005493.01.T01:CDS 40.0%
! GGGATGAACTGACTTATTAG+TGG - Chr1:92445005-92445024 None:intergenic 40.0%
! GTGATTGTGTGGATGTGTTT+TGG + Chr1:92445066-92445085 MsG0180005493.01.T01:three_prime_UTR 40.0%
! TCTGAGGTAGAATTCGTAGA+GGG - Chr1:92444899-92444918 None:intergenic 40.0%
! TTTCTCTCTTGAAGTTCTGG+AGG - Chr1:92442465-92442484 None:intergenic 40.0%
!! AACGTTGACTTCATGATAGG+TGG - Chr1:92443219-92443238 None:intergenic 40.0%
!! ATCAAAGTTAGTGGTGATGG+AGG + Chr1:92443606-92443625 MsG0180005493.01.T01:CDS 40.0%
!! CTATGTAATCCCGTTTTTCC+GGG - Chr1:92444135-92444154 None:intergenic 40.0%
!! GCTTAAGTTGGATGGTATAG+TGG + Chr1:92443919-92443938 MsG0180005493.01.T01:CDS 40.0%
!! TTCTGAGGTAGAATTCGTAG+AGG - Chr1:92444900-92444919 None:intergenic 40.0%
GTGTCCACTTTAGGTCACAA+GGG + Chr1:92444179-92444198 MsG0180005493.01.T01:intron 45.0%
GTGTCTGTATTCGTGTGGAT+TGG + Chr1:92442920-92442939 MsG0180005493.01.T01:five_prime_UTR 45.0%
TGGAAGTAGATAGGCTTGCA+GGG + Chr1:92443716-92443735 MsG0180005493.01.T01:CDS 45.0%
TGGATGGTATAGTGGCTGAT+GGG + Chr1:92443927-92443946 MsG0180005493.01.T01:CDS 45.0%
TGTGTCCACTTTAGGTCACA+AGG + Chr1:92444178-92444197 MsG0180005493.01.T01:intron 45.0%
TTGGAAGTAGATAGGCTTGC+AGG + Chr1:92443715-92443734 MsG0180005493.01.T01:CDS 45.0%
TTGGATGGTATAGTGGCTGA+TGG + Chr1:92443926-92443945 MsG0180005493.01.T01:CDS 45.0%
TTGTCCCTTGTGACCTAAAG+TGG - Chr1:92444186-92444205 None:intergenic 45.0%
! ACGTGAGTAGGAGGATTTTG+TGG - Chr1:92442603-92442622 None:intergenic 45.0%
! GGTCATTTAAAATGGGACGG+AGG - Chr1:92444250-92444269 None:intergenic 45.0%
! TCCATAAACTTTTCCGGCAC+CGG + Chr1:92442728-92442747 MsG0180005493.01.T01:five_prime_UTR 45.0%
! TTTTGTGGTTCACGTTGGGT+TGG + Chr1:92442799-92442818 MsG0180005493.01.T01:intron 45.0%
!! TGAAGTTCTGGAGGAATCGA+TGG - Chr1:92442456-92442475 None:intergenic 45.0%
!! TGCTCAAGAGAAGAGGTACT+TGG + Chr1:92443636-92443655 MsG0180005493.01.T01:CDS 45.0%
!!! CCGGCGATCTTTCTTTTTTG+TGG + Chr1:92442758-92442777 MsG0180005493.01.T01:five_prime_UTR 45.0%
!! AATAATAATAATAATAAAAG+GGG - Chr1:92443276-92443295 None:intergenic 5.0%
!!! AAAAATATTTTATAAAAACA+AGG + Chr1:92443537-92443556 MsG0180005493.01.T01:CDS 5.0%
!!! AATTTTTTTTTTTTATGATA+AGG + Chr1:92443744-92443763 MsG0180005493.01.T01:intron 5.0%
!!! TGTTTTTATAAAATATTTTT+TGG - Chr1:92443537-92443556 None:intergenic 5.0%
AGGATGGCAGCATAGTTAGC+TGG + Chr1:92442371-92442390 MsG0180005493.01.T01:five_prime_UTR 50.0%
ATCTCCCACTCCAAACCTCT+AGG - Chr1:92443101-92443120 None:intergenic 50.0%
CACTCCAAACCTCTAGGTTC+GGG - Chr1:92443095-92443114 None:intergenic 50.0%
CCACTCCAAACCTCTAGGTT+CGG - Chr1:92443096-92443115 None:intergenic 50.0%
CTTAGACTCGGATCGAGACT+CGG + Chr1:92443154-92443173 MsG0180005493.01.T01:CDS 50.0%
GATGAGGATGCTGAAGTGAC+AGG - Chr1:92444974-92444993 None:intergenic 50.0%
GGATGGTATAGTGGCTGATG+GGG + Chr1:92443928-92443947 MsG0180005493.01.T01:CDS 50.0%
GTGGAATGACAGACGTGACA+GGG + Chr1:92444435-92444454 MsG0180005493.01.T01:intron 50.0%
TCAACGCCGAACCTTAGACT+CGG + Chr1:92443142-92443161 MsG0180005493.01.T01:CDS 50.0%
TGTGGAATGACAGACGTGAC+AGG + Chr1:92444434-92444453 MsG0180005493.01.T01:intron 50.0%
! ACCGGTGCCGGAAAAGTTTA+TGG - Chr1:92442732-92442751 None:intergenic 50.0%
! CGAACCTAGAGGTTTGGAGT+GGG + Chr1:92443094-92443113 MsG0180005493.01.T01:CDS 50.0%
! CTCGATCCGAGTCTAAGGTT+CGG - Chr1:92443151-92443170 None:intergenic 50.0%
!! TCTTGGTGGTGTATCCCAGT+TGG - Chr1:92443514-92443533 None:intergenic 50.0%
AAAGATCGCCGGACGGTAAC+CGG - Chr1:92442750-92442769 None:intergenic 55.0%
AGTAGATAGGCTTGCAGGGC+AGG + Chr1:92443720-92443739 MsG0180005493.01.T01:CDS 55.0%
CCGAACCTAGAGGTTTGGAG+TGG + Chr1:92443093-92443112 MsG0180005493.01.T01:CDS 55.0%
CGAGTCTCGATCCGAGTCTA+AGG - Chr1:92443156-92443175 None:intergenic 55.0%
CGTTGAACCAACAAGCCTCC+TGG - Chr1:92443128-92443147 None:intergenic 55.0%
GATGAGACCAGGAGGCTTGT+TGG + Chr1:92443118-92443137 MsG0180005493.01.T01:CDS 55.0%
GGTTCCCGAACCTAGAGGTT+TGG + Chr1:92443088-92443107 MsG0180005493.01.T01:CDS 55.0%
GTGGTGTATCCCAGTTGGAC+CGG - Chr1:92443509-92443528 None:intergenic 55.0%
TTGGAGTGGGAGATGAGACC+AGG + Chr1:92443107-92443126 MsG0180005493.01.T01:CDS 55.0%
GAGTGGGAGATGAGACCAGG+AGG + Chr1:92443110-92443129 MsG0180005493.01.T01:CDS 60.0%
! GGTTCGGTTCCCGAACCTAG+AGG + Chr1:92443083-92443102 MsG0180005493.01.T01:CDS 60.0%
!! TTCCGGCACCGGTTACCGTC+CGG + Chr1:92442739-92442758 MsG0180005493.01.T01:five_prime_UTR 65.0%
CGCCGGACGGTAACCGGTGC+CGG - Chr1:92442744-92442763 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 92442371 92445330 92442371 ID=MsG0180005493.01;Name=MsG0180005493.01
Chr1 mRNA 92442371 92445330 92442371 ID=MsG0180005493.01.T01;Parent=MsG0180005493.01;Name=MsG0180005493.01.T01;_AED=0.19;_eAED=0.19;_QI=650|1|1|1|0.75|0.6|5|279|333
Chr1 exon 92442371 92442785 92442371 ID=MsG0180005493.01.T01:exon:49708;Parent=MsG0180005493.01.T01
Chr1 exon 92442812 92443257 92442812 ID=MsG0180005493.01.T01:exon:49709;Parent=MsG0180005493.01.T01
Chr1 exon 92443485 92443741 92443485 ID=MsG0180005493.01.T01:exon:49710;Parent=MsG0180005493.01.T01
Chr1 exon 92443830 92443976 92443830 ID=MsG0180005493.01.T01:exon:49711;Parent=MsG0180005493.01.T01
Chr1 exon 92444665 92445330 92444665 ID=MsG0180005493.01.T01:exon:49712;Parent=MsG0180005493.01.T01
Chr1 five_prime_UTR 92442371 92442785 92442371 ID=MsG0180005493.01.T01:five_prime_utr;Parent=MsG0180005493.01.T01
Chr1 five_prime_UTR 92442812 92443046 92442812 ID=MsG0180005493.01.T01:five_prime_utr;Parent=MsG0180005493.01.T01
Chr1 CDS 92443047 92443257 92443047 ID=MsG0180005493.01.T01:cds;Parent=MsG0180005493.01.T01
Chr1 CDS 92443485 92443741 92443485 ID=MsG0180005493.01.T01:cds;Parent=MsG0180005493.01.T01
Chr1 CDS 92443830 92443976 92443830 ID=MsG0180005493.01.T01:cds;Parent=MsG0180005493.01.T01
Chr1 CDS 92444665 92445051 92444665 ID=MsG0180005493.01.T01:cds;Parent=MsG0180005493.01.T01
Chr1 three_prime_UTR 92445052 92445330 92445052 ID=MsG0180005493.01.T01:three_prime_utr;Parent=MsG0180005493.01.T01
Gene Sequence

>MsG0180005493.01.T01

ATGATGAAGATGAAGAACGTGACGAATCATAATGGAGGTTCGGTTCCCGAACCTAGAGGTTTGGAGTGGGAGATGAGACCAGGAGGCTTGTTGGTTCAACGCCGAACCTTAGACTCGGATCGAGACTCGGTTCCTCCACCGACAATTAGAGTTAAGGTTAAATTTGGTTCCACCTATCATGAAGTCAACGTTAGTTCACAAGCAACATTTGGGGAATTGAAGAAAATGTTAACCGGTCCAACTGGGATACACCACCAAGACCAAAAAATATTTTATAAAAACAAGGAGAGGGATTCAAAGGCATTTCTTGACATAGTAGGAGTTAAAGATAAATCAAAGTTAGTGGTGATGGAGGATCCTATTGCTCAAGAGAAGAGGTACTTGGAAATGAGAAAGAATATAAAGATGGAAAGGGCTGCAAAATCTATTTCAGAAATTAGCTTGGAAGTAGATAGGCTTGCAGGGCAGGTGTCTGCTCTCGAAACAATAATTAGTAAAGGTGGGAGAGTTGTAGAGACAGATGTGCTTAGTTTGATTGAGAAATTGATGAATCAGTTGCTTAAGTTGGATGGTATAGTGGCTGATGGGGATGTTAAATTGCAGAGGAAAATGCAGGTAAAAAGAGTACAAAAGTATGTTGAAACTTTGGATATGTTGAAAATTAAGAATTCTAATGGAGGTCATGTCCCAAAGAAGAAGCCTCAACAAAAAGTAAAATTGCCTCCAATTGATGAGCAACTAGAAGGCATGTCTATTGGGAATCATAAATTACAACCAAATTTGGAGCAACAATCACAAAGGATCTCAAACGGGAATTCTCAAGTATTTCAGCAGCTGCAGCACAAACCCTCTACGAATTCTACCTCAGAAGTTGTAGTTACTACAAAATGGGAGACATTTGATTCTCTACCACCATTAATTCCTGTCACTTCAGCATCCTCATCAAGCTCATCCACTAATAAGTCAGTTCATCCCAAGTTCAAATGGGAACACTTCGAGTAA

Protein sequence

>MsG0180005493.01.T01

MMKMKNVTNHNGGSVPEPRGLEWEMRPGGLLVQRRTLDSDRDSVPPPTIRVKVKFGSTYHEVNVSSQATFGELKKMLTGPTGIHHQDQKIFYKNKERDSKAFLDIVGVKDKSKLVVMEDPIAQEKRYLEMRKNIKMERAAKSISEISLEVDRLAGQVSALETIISKGGRVVETDVLSLIEKLMNQLLKLDGIVADGDVKLQRKMQVKRVQKYVETLDMLKIKNSNGGHVPKKKPQQKVKLPPIDEQLEGMSIGNHKLQPNLEQQSQRISNGNSQVFQQLQHKPSTNSTSEVVVTTKWETFDSLPPLIPVTSASSSSSSTNKSVHPKFKWEHFE*