AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012872.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012872.01.T01 MTR_3g033520 92.083 581 37 3 1 574 1 579 0.0 1014
MsG0380012872.01.T01 MTR_3g033520 92.513 561 39 2 16 574 1 560 0.0 989
MsG0380012872.01.T01 MTR_7g086710 31.961 413 267 5 142 549 39 442 5.13e-67 225
MsG0380012872.01.T01 MTR_5g054780 28.247 308 183 7 256 537 150 445 2.15e-30 125
MsG0380012872.01.T01 MTR_6g027560 34.066 182 93 2 374 554 78 233 4.78e-29 115
MsG0380012872.01.T01 MTR_1g111330 27.922 308 184 7 256 537 156 451 7.83e-29 120
MsG0380012872.01.T01 MTR_1g111330 28.000 200 122 4 256 437 156 351 5.47e-15 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012872.01.T01 AT5G13760 59.008 605 173 7 1 569 1 566 0.0 702
MsG0380012872.01.T01 AT3G04440 29.130 460 297 10 117 565 10 451 9.67e-57 197
MsG0380012872.01.T01 AT3G03700 29.295 454 291 10 123 565 40 474 1.59e-56 197
MsG0380012872.01.T01 AT3G04440 29.295 454 291 10 123 565 40 474 1.79e-56 197
MsG0380012872.01.T01 AT5G17830 26.623 462 288 12 127 559 20 459 1.01e-36 143
MsG0380012872.01.T01 AT5G17830 27.751 418 268 11 156 559 41 438 1.37e-35 139
MsG0380012872.01.T01 AT1G25500 25.000 296 207 4 257 537 157 452 5.77e-18 87.4
MsG0380012872.01.T01 AT1G25500 25.000 296 207 4 257 537 99 394 9.01e-18 86.3
MsG0380012872.01.T01 AT1G25500 28.079 203 129 4 296 481 68 270 4.09e-15 77.0

Find 150 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGATTCAAATCACTGAATT+TGG 0.146968 3:-26127233 None:intergenic
CCATGTCTTCCTTCTCAAAT+AGG 0.235190 3:-26128468 None:intergenic
ATTAAAAGACTAATTAAATT+AGG 0.240903 3:-26129839 None:intergenic
CACCGTCGGTTGGAGGCTTT+TGG 0.251711 3:-26127099 None:intergenic
GGAAGAAGGGTTAAGGGATT+TGG 0.258383 3:+26125785 MsG0380012872.01.T01:CDS
GAATCTTGGAAGTGCTTGTT+TGG 0.268610 3:+26127498 MsG0380012872.01.T01:CDS
ATTCTTCATTGGATACCTTT+TGG 0.272961 3:+26128630 MsG0380012872.01.T01:CDS
ATTCAAGTATTCAACTCTTT+TGG 0.277970 3:-26129562 None:intergenic
GGCAAGGTGCAATTAGAAAA+TGG 0.286876 3:+26126999 MsG0380012872.01.T01:CDS
TGAGAGCGTTGAGATTTCTT+AGG 0.291686 3:-26126008 None:intergenic
TTTGAAGAAGATGACGTTAC+TGG 0.308261 3:-26125499 None:intergenic
TTGTTAATATAACGGTTAGT+AGG 0.320823 3:+26127404 MsG0380012872.01.T01:CDS
GATTCTTGTGGATAACTATA+TGG 0.339387 3:+26127281 MsG0380012872.01.T01:CDS
CAAGAGCGATAGCTAGTAAT+TGG 0.344477 3:-26126835 None:intergenic
ATTGGTGCTGGTGTTGGTAT+AGG 0.351324 3:-26126050 None:intergenic
TATTGTTAGGTATGCGTAGA+AGG 0.352283 3:+26129808 MsG0380012872.01.T01:three_prime_UTR
AATCTTGGAAGTGCTTGTTT+GGG 0.354656 3:+26127499 MsG0380012872.01.T01:CDS
TGTTGCGCTCGTTGTTGTTT+GGG 0.356549 3:+26127607 MsG0380012872.01.T01:CDS
ATTCTCAGCGCTTCAATTGT+TGG 0.359023 3:-26127535 None:intergenic
CATCGCATTAGTGTTGAGTT+TGG 0.360394 3:+26127354 MsG0380012872.01.T01:CDS
TCTTTACTCACATTCTTCAT+TGG 0.361425 3:+26128619 MsG0380012872.01.T01:CDS
GAAAGAAGGAAGAAGGGTTA+AGG 0.363593 3:+26125778 MsG0380012872.01.T01:CDS
ACAATCCTCAAAGGGTTAGT+AGG 0.380125 3:-26125948 None:intergenic
TTGTTGCGCTCGTTGTTGTT+TGG 0.382253 3:+26127606 MsG0380012872.01.T01:CDS
GATATGAAAACTGCTCTTAG+TGG 0.384120 3:+26129525 MsG0380012872.01.T01:three_prime_UTR
TGTTGCGGTGGTGGTGGTGG+TGG 0.386735 3:-26126086 None:intergenic
GGTCACATGTTATATAAATA+AGG 0.393313 3:+26130293 MsG0380012872.01.T01:three_prime_UTR
GGTTGTTGCGGTGGTGGTGG+TGG 0.394385 3:-26126089 None:intergenic
TTATGTTGTTGTGTTTCATT+TGG 0.394877 3:-26125475 None:intergenic
TAATCCAGGGAATTAGAGAT+AGG 0.397214 3:+26129401 MsG0380012872.01.T01:three_prime_UTR
TTTATTCAAAATTCCAATGA+TGG 0.408830 3:-26129653 None:intergenic
CTAATTTCGTCATTTAATCC+AGG 0.410254 3:+26129387 MsG0380012872.01.T01:three_prime_UTR
GTTATATCAGCATCTACTAT+TGG 0.412428 3:-26128493 None:intergenic
GAGGAATGTTGTTAATATAA+CGG 0.414847 3:+26127396 MsG0380012872.01.T01:CDS
TAAACCCTACTAACCCTTTG+AGG 0.414943 3:+26125943 MsG0380012872.01.T01:CDS
GGGTTAAGGGATTTGGAGAA+AGG 0.415418 3:+26125792 MsG0380012872.01.T01:CDS
AGAGCGTTGACTCGGAATCT+TGG 0.415922 3:+26127484 MsG0380012872.01.T01:CDS
ATATGGACTTTAGCAGTAGT+TGG 0.416090 3:+26127298 MsG0380012872.01.T01:CDS
GGTGGTTGTGGAGTTTGAAT+TGG 0.416842 3:-26126068 None:intergenic
GCGATTGGCAATGGCTTGTA+TGG 0.419165 3:+26127145 MsG0380012872.01.T01:CDS
CAGATTCTTGTACTAGTCCT+TGG 0.419684 3:-26126883 None:intergenic
TGTGGAGTTTGAATTGGTGC+TGG 0.421714 3:-26126062 None:intergenic
AAAGAAGGAAGAAGGGTTAA+GGG 0.426076 3:+26125779 MsG0380012872.01.T01:CDS
GCAATGGCTTGTATGGTTGT+TGG 0.427723 3:+26127152 MsG0380012872.01.T01:CDS
ACTTACTACATGCTTGCGGC+TGG 0.429515 3:+26127259 MsG0380012872.01.T01:CDS
CTTGGACCACAGAGGTTATG+AGG 0.433740 3:+26127377 MsG0380012872.01.T01:CDS
AATCTTGATGGCTGAGGAAG+TGG 0.437026 3:+26129601 MsG0380012872.01.T01:three_prime_UTR
AATGATGGAACTCCACCATA+TGG 0.446152 3:-26129781 None:intergenic
GTGTTATTGTTGTAGCTGCT+TGG 0.447472 3:+26128560 MsG0380012872.01.T01:CDS
TAAAACAATTAAAGATCGTC+AGG 0.449254 3:+26129217 MsG0380012872.01.T01:CDS
ATGAAGGGTATAATGTTTCA+AGG 0.451587 3:+26125910 MsG0380012872.01.T01:CDS
CATTAGTGTTGAGTTTGGCT+TGG 0.452587 3:+26127359 MsG0380012872.01.T01:CDS
CGTTGAGATTTCTTAGGAGG+AGG 0.452943 3:-26126002 None:intergenic
TCATAACAGATTGCAGCCTA+TGG 0.456525 3:+26128409 MsG0380012872.01.T01:intron
TGTGGTGGTTGTTGCGGTGG+TGG 0.457626 3:-26126095 None:intergenic
TGTTATAAAATCATTGAGGC+TGG 0.457683 3:+26130263 MsG0380012872.01.T01:three_prime_UTR
TTTCAGAAATGGCAATAGTT+GGG 0.457931 3:+26127645 MsG0380012872.01.T01:CDS
GGTGGTTGTTGCGGTGGTGG+TGG 0.466194 3:-26126092 None:intergenic
CATGTCTTCCTTCTCAAATA+GGG 0.466916 3:-26128467 None:intergenic
CAAGGACTAGTACAAGAATC+TGG 0.467966 3:+26126884 MsG0380012872.01.T01:CDS
CTGGCTTGAAGAGCCATCAT+TGG 0.473312 3:+26129640 MsG0380012872.01.T01:three_prime_UTR
ACCTAACAATAAAATAATGA+TGG 0.478479 3:-26129796 None:intergenic
TGTTAATATAACGGTTAGTA+GGG 0.478570 3:+26127405 MsG0380012872.01.T01:CDS
AGCTCAATTTGCTTCCTCAC+AGG 0.480823 3:+26128517 MsG0380012872.01.T01:CDS
GTTTGAATTGGTGCTGGTGT+TGG 0.482355 3:-26126056 None:intergenic
GATTTGGAGAAAGGTGAAGT+TGG 0.491080 3:+26125801 MsG0380012872.01.T01:CDS
GATGATGGAAAGAAGGAAGA+AGG 0.493045 3:+26125771 MsG0380012872.01.T01:CDS
TTCCCCTAAAATAAAACTCA+TGG 0.495105 3:-26129875 None:intergenic
AAAGATGGATGATGGAAAGA+AGG 0.495208 3:+26125764 MsG0380012872.01.T01:CDS
CTTCTTGAATTAAGTGTCAC+CGG 0.495904 3:-26126773 None:intergenic
TGAAGAATGTGAGTAAAGAC+AGG 0.496211 3:-26128615 None:intergenic
TTGTGATGTCTCTTGCAGCC+GGG 0.496627 3:+26127059 MsG0380012872.01.T01:CDS
CAGATTGCAGCCTATGGAAG+AGG 0.497415 3:+26128415 MsG0380012872.01.T01:intron
AAGAATCTGGTTCTGTTAAG+AGG 0.500285 3:+26126897 MsG0380012872.01.T01:CDS
CTTGTGTTCAAGAGAGTCCA+AGG 0.500287 3:+26126866 MsG0380012872.01.T01:CDS
AAAACCTATCTCTAATTCCC+TGG 0.500685 3:-26129405 None:intergenic
GACTTAGAAGATATACTTCA+AGG 0.502776 3:+26129285 MsG0380012872.01.T01:CDS
CAATCCTCAAAGGGTTAGTA+GGG 0.503463 3:-26125947 None:intergenic
CAATAGTTGGGCATATGTAC+AGG 0.512027 3:+26127657 MsG0380012872.01.T01:CDS
GGAGCTAGAAAGATGGATGA+TGG 0.512342 3:+26125756 MsG0380012872.01.T01:CDS
CTATTCATCACAATCCTCAA+AGG 0.517811 3:-26125957 None:intergenic
TAATTTCGTCATTTAATCCA+GGG 0.518496 3:+26129388 MsG0380012872.01.T01:three_prime_UTR
ACTAAGTAAATTCAAGATGA+AGG 0.521534 3:+26129493 MsG0380012872.01.T01:three_prime_UTR
GAGCGTTGAGATTTCTTAGG+AGG 0.523480 3:-26126005 None:intergenic
AAGCGCTGAGAATTGTTGCT+AGG 0.526914 3:+26127545 MsG0380012872.01.T01:CDS
GCTTTCTGAGAGCGTTGACT+CGG 0.527234 3:+26127476 MsG0380012872.01.T01:CDS
AAGTGAAGGAGCTAGAAAGA+TGG 0.528600 3:+26125749 MsG0380012872.01.T01:CDS
TTTGTGATGTCTCTTGCAGC+CGG 0.528803 3:+26127058 MsG0380012872.01.T01:CDS
TTCCTCACAGGAGTTTGTAG+TGG 0.532054 3:+26128529 MsG0380012872.01.T01:CDS
TGAGATTTCTTAGGAGGAGG+AGG 0.532542 3:-26125999 None:intergenic
TATTCATCACAATCCTCAAA+GGG 0.536329 3:-26125956 None:intergenic
GAGAATGTTGCTCATGGTCA+TGG 0.538173 3:+26125873 MsG0380012872.01.T01:CDS
TGCTTGCGGCTGGATTCTTG+TGG 0.540887 3:+26127269 MsG0380012872.01.T01:CDS
GTATATCTTCTAAGTCCCCT+TGG 0.542647 3:-26129278 None:intergenic
ACACCAACACCGTCGGTTGG+AGG 0.545410 3:-26127106 None:intergenic
CTTCTAAGTCCCCTTGGTGT+AGG 0.546621 3:-26129272 None:intergenic
AAAGTTGCAGCTTCCACTTG+TGG 0.550103 3:-26126950 None:intergenic
ATCGCGTTGTATTACTTGAG+AGG 0.553720 3:+26127430 MsG0380012872.01.T01:CDS
TAAACATGATATTACAAGGA+TGG 0.557418 3:-26129725 None:intergenic
AGCGCTGAGAATTGTTGCTA+GGG 0.557666 3:+26127546 MsG0380012872.01.T01:CDS
ATGATGGAAAGAAGGAAGAA+GGG 0.557742 3:+26125772 MsG0380012872.01.T01:CDS
AAGCCTCCAACCGACGGTGT+TGG 0.558221 3:+26127103 MsG0380012872.01.T01:CDS
AATGAACATTATTTACAGCA+TGG 0.565371 3:-26130207 None:intergenic
TGGACCACAAGTCACTTTAG+TGG 0.568408 3:-26129705 None:intergenic
ATCTTGGAAGTGCTTGTTTG+GGG 0.569876 3:+26127500 MsG0380012872.01.T01:CDS
GAGCGATAGCTAGTAATTGG+TGG 0.570906 3:-26126832 None:intergenic
TGAAAACTGCTCTTAGTGGA+AGG 0.575553 3:+26129529 MsG0380012872.01.T01:three_prime_UTR
CATACCTGTGGTGGTTGTTG+CGG 0.578038 3:-26126101 None:intergenic
TGTGAGGAAGCAAATTGAGC+TGG 0.579856 3:-26128515 None:intergenic
GAAATTAATTACATGTTCAG+TGG 0.579891 3:-26125597 None:intergenic
TGTTAGGTGGATGAAAGTGA+AGG 0.579987 3:+26125735 MsG0380012872.01.T01:intron
ACCTGTGGTGGTTGTTGCGG+TGG 0.585907 3:-26126098 None:intergenic
TAAATAAACATGATATTACA+AGG 0.589674 3:-26129729 None:intergenic
CATTACAAAACCTCTTCCAT+AGG 0.590212 3:-26128425 None:intergenic
GAAGCAAATAAGAAGAATCC+CGG 0.590499 3:-26127077 None:intergenic
CAAACACCAACACCGTCGGT+TGG 0.593373 3:-26127109 None:intergenic
GAAAACTGCTCTTAGTGGAA+GGG 0.593757 3:+26129530 MsG0380012872.01.T01:three_prime_UTR
TGCTGGTGTTGGTATAGGAA+TGG 0.595051 3:-26126045 None:intergenic
CACATGGTCCCTATTTGAGA+AGG 0.599548 3:+26128459 MsG0380012872.01.T01:CDS
AACTTGTTATAAAATCATTG+AGG 0.604191 3:+26130259 MsG0380012872.01.T01:three_prime_UTR
CCTATTTGAGAAGGAAGACA+TGG 0.604555 3:+26128468 MsG0380012872.01.T01:CDS
ATCATTGAGGCTGGTTGGTG+TGG 0.605809 3:+26130272 MsG0380012872.01.T01:three_prime_UTR
ACCACCGCAACAACCACCAC+AGG 0.611073 3:+26126097 MsG0380012872.01.T01:CDS
TTCCAAAAGCCTCCAACCGA+CGG 0.616758 3:+26127097 MsG0380012872.01.T01:CDS
AAATCACTGAATTTGGACAT+CGG 0.616978 3:-26127226 None:intergenic
TTTGCAGACTAGGATTGCAA+TGG 0.618762 3:+26129124 MsG0380012872.01.T01:intron
ATAAAATCATTGAGGCTGGT+TGG 0.624818 3:+26130267 MsG0380012872.01.T01:three_prime_UTR
ATTGGCTGTACCTACACCAA+GGG 0.639295 3:+26129262 MsG0380012872.01.T01:CDS
CGCTGAGAATTGTTGCTAGG+GGG 0.642798 3:+26127548 MsG0380012872.01.T01:CDS
GAAACAAACACCAACACCGT+CGG 0.650322 3:-26127113 None:intergenic
TAACAACTCACACAAGCATG+AGG 0.654342 3:-26129152 None:intergenic
GCCGCAAGCATGTAGTAAGT+AGG 0.655110 3:-26127256 None:intergenic
ACCTACTTACTACATGCTTG+CGG 0.656483 3:+26127255 MsG0380012872.01.T01:CDS
GCGCTGAGAATTGTTGCTAG+GGG 0.663147 3:+26127547 MsG0380012872.01.T01:CDS
GGTGGTCATGATGATCATGA+AGG 0.663679 3:+26125894 MsG0380012872.01.T01:CDS
GATGTTGAGAATGTTGCTCA+TGG 0.673579 3:+26125867 MsG0380012872.01.T01:CDS
AATGCCACTAAAGTGACTTG+TGG 0.678107 3:+26129701 MsG0380012872.01.T01:three_prime_UTR
GTGGTCATGATGATCATGAA+GGG 0.680503 3:+26125895 MsG0380012872.01.T01:CDS
GTGGAGAGCGAATATAAACA+AGG 0.681249 3:-26126813 None:intergenic
AATTGGCTGTACCTACACCA+AGG 0.681948 3:+26129261 MsG0380012872.01.T01:CDS
ACTAATGCGATGATAACCAA+AGG 0.685584 3:-26127343 None:intergenic
AACATTCCTCATAACCTCTG+TGG 0.686877 3:-26127383 None:intergenic
TAATGGCATCACAAGACACA+TGG 0.695244 3:+26128443 MsG0380012872.01.T01:CDS
GAGTTTGGCTTGGACCACAG+AGG 0.698961 3:+26127369 MsG0380012872.01.T01:CDS
AATGCGATGATAACCAAAGG+CGG 0.700321 3:-26127340 None:intergenic
TTGGCTGTACCTACACCAAG+GGG 0.705525 3:+26129263 MsG0380012872.01.T01:CDS
GAAGAATGTGAGTAAAGACA+GGG 0.705854 3:-26128614 None:intergenic
AGCCACTACAAACTCCTGTG+AGG 0.724232 3:-26128531 None:intergenic
AATGTTGCTCATGGTCATGG+TGG 0.726262 3:+26125876 MsG0380012872.01.T01:CDS
GAATGTGAGTAAAGACAGGG+TGG 0.767321 3:-26128611 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAATTGTTTAAAAAATTA+AGG - Chr3:26128866-26128885 None:intergenic 10.0%
!! ATAGATATAGTTATATTATA+TGG - Chr3:26127718-26127737 None:intergenic 10.0%
!! ATTAAAAGACTAATTAAATT+AGG - Chr3:26129842-26129861 None:intergenic 10.0%
!! CATTAAAAGATATAAAAAAA+TGG - Chr3:26128674-26128693 None:intergenic 10.0%
!!! AAATTTACATTTTTGTTAAA+GGG + Chr3:26126369-26126388 MsG0380012872.01.T01:intron 10.0%
!!! AAATTTACTTTTTTTAGTAA+AGG + Chr3:26126510-26126529 MsG0380012872.01.T01:intron 10.0%
!!! CATTTTTTTATATCTTTTAA+TGG + Chr3:26128672-26128691 MsG0380012872.01.T01:intron 10.0%
!!! TAAATTATTTTAAAAATCCA+AGG - Chr3:26128834-26128853 None:intergenic 10.0%
!!! TTCTTTAATTTTTTCAAAAT+GGG + Chr3:26125650-26125669 MsG0380012872.01.T01:intron 10.0%
!!! TTTTTAAACAATTTGTATTT+GGG + Chr3:26128870-26128889 MsG0380012872.01.T01:intron 10.0%
!!! TTTTTATATAAATTAGAGTT+AGG - Chr3:26128913-26128932 None:intergenic 10.0%
!!! TTTTTTAAACAATTTGTATT+TGG + Chr3:26128869-26128888 MsG0380012872.01.T01:intron 10.0%
!!! TTTTTTAACATAAAATAAAG+GGG - Chr3:26130169-26130188 None:intergenic 10.0%
!!! TTTTTTTTAATGTTTTTGTT+AGG + Chr3:26125719-26125738 MsG0380012872.01.T01:intron 10.0%
!! ATAAAAAAATGGTCAAATAA+GGG - Chr3:26128663-26128682 None:intergenic 15.0%
!! ATAAAATGAACCATAAAAAT+TGG - Chr3:26127025-26127044 None:intergenic 15.0%
!! TAAATAAACATGATATTACA+AGG - Chr3:26129732-26129751 None:intergenic 15.0%
!! TATAAAAAAATGGTCAAATA+AGG - Chr3:26128664-26128683 None:intergenic 15.0%
!!! AACCTTAAATTTTTTCAAAT+GGG + Chr3:26125572-26125591 MsG0380012872.01.T01:exon 15.0%
!!! AATTTTAATCTTTTTGTCTT+TGG + Chr3:26125691-26125710 MsG0380012872.01.T01:intron 15.0%
!!! ACAAAGATTGTAATTTTTTA+AGG + Chr3:26126681-26126700 MsG0380012872.01.T01:intron 15.0%
!!! AGATTAAAATTTTACACAAA+TGG - Chr3:26125682-26125701 None:intergenic 15.0%
!!! CAAAGATTGTAATTTTTTAA+GGG + Chr3:26126682-26126701 MsG0380012872.01.T01:intron 15.0%
!!! CTTCTTTAATTTTTTCAAAA+TGG + Chr3:26125649-26125668 MsG0380012872.01.T01:intron 15.0%
!!! GAAATTTACATTTTTGTTAA+AGG + Chr3:26126368-26126387 MsG0380012872.01.T01:intron 15.0%
!!! GACTATTATAATTAATTTTC+TGG + Chr3:26127742-26127761 MsG0380012872.01.T01:intron 15.0%
!!! GTCGTTAATTTAATTTTTTT+TGG - Chr3:26129333-26129352 None:intergenic 15.0%
!!! TAACCTTAAATTTTTTCAAA+TGG + Chr3:26125571-26125590 MsG0380012872.01.T01:exon 15.0%
!!! TAATTTTTATTTTTGGTAAG+TGG + Chr3:26126587-26126606 MsG0380012872.01.T01:intron 15.0%
!!! TTAGTAGTTTAGTTTTATTT+GGG - Chr3:26128944-26128963 None:intergenic 15.0%
!!! TTTTTTGTACATATACTTTT+AGG + Chr3:26129753-26129772 MsG0380012872.01.T01:three_prime_UTR 15.0%
!! AAAAATCACAAATTAAGTCA+GGG - Chr3:26128721-26128740 None:intergenic 20.0%
!! ACCTAACAATAAAATAATGA+TGG - Chr3:26129799-26129818 None:intergenic 20.0%
!! ACTTGAAAAAAATAAATCCA+TGG + Chr3:26127953-26127972 MsG0380012872.01.T01:intron 20.0%
!! ATAATGTCTTTAAGTAGTTA+AGG + Chr3:26129010-26129029 MsG0380012872.01.T01:intron 20.0%
!! TAAAAAAATGGTCAAATAAG+GGG - Chr3:26128662-26128681 None:intergenic 20.0%
!! TAAAAATCACAAATTAAGTC+AGG - Chr3:26128722-26128741 None:intergenic 20.0%
!! TAAATTTACATGTGTTCATT+TGG + Chr3:26126658-26126677 MsG0380012872.01.T01:intron 20.0%
!! TAATGTCTTTAAGTAGTTAA+GGG + Chr3:26129011-26129030 MsG0380012872.01.T01:intron 20.0%
!! TTTATTCAAAATTCCAATGA+TGG - Chr3:26129656-26129675 None:intergenic 20.0%
!!! AACTTGTTATAAAATCATTG+AGG + Chr3:26130259-26130278 MsG0380012872.01.T01:three_prime_UTR 20.0%
!!! ATTGGAATTTTGAATAAATG+TGG + Chr3:26129658-26129677 MsG0380012872.01.T01:three_prime_UTR 20.0%
!!! ATTTTAGAGTAAAAAAGTGA+AGG - Chr3:26127889-26127908 None:intergenic 20.0%
!!! GATGAATTCAAATTTAAGTT+AGG - Chr3:26128391-26128410 None:intergenic 20.0%
!!! GTTAGTAGTTTAGTTTTATT+TGG - Chr3:26128945-26128964 None:intergenic 20.0%
!!! TAAACTACTAACCAAATTTT+GGG + Chr3:26128953-26128972 MsG0380012872.01.T01:intron 20.0%
!!! TCCATCATTATTTTATTGTT+AGG + Chr3:26129795-26129814 MsG0380012872.01.T01:three_prime_UTR 20.0%
!!! TGGATTTATTTTTTTCAAGT+CGG - Chr3:26127953-26127972 None:intergenic 20.0%
!!! TTAGTTGTTTTCTTTGTAAT+GGG + Chr3:26126443-26126462 MsG0380012872.01.T01:intron 20.0%
!!! TTATGGTTCATTTTATACTT+TGG + Chr3:26127029-26127048 MsG0380012872.01.T01:CDS 20.0%
!!! TTGGAATTTTGAATAAATGT+GGG + Chr3:26129659-26129678 MsG0380012872.01.T01:three_prime_UTR 20.0%
!!! TTTAGTTGTTTTCTTTGTAA+TGG + Chr3:26126442-26126461 MsG0380012872.01.T01:intron 20.0%
!!! TTTTTAATGTTTTTGTTAGG+TGG + Chr3:26125722-26125741 MsG0380012872.01.T01:intron 20.0%
!!! TTTTTTGTTAATGTGTTAAG+AGG + Chr3:26126300-26126319 MsG0380012872.01.T01:intron 20.0%
! AATGAACATTATTTACAGCA+TGG - Chr3:26130210-26130229 None:intergenic 25.0%
! ACTAAGTAAATTCAAGATGA+AGG + Chr3:26129493-26129512 MsG0380012872.01.T01:three_prime_UTR 25.0%
! ATGAACAGTTGATTAGTATT+TGG + Chr3:26127691-26127710 MsG0380012872.01.T01:intron 25.0%
! ATGACAACAAATTTGAAAGA+CGG - Chr3:26128309-26128328 None:intergenic 25.0%
! CACCCATTTGAAAAAATTTA+AGG - Chr3:26125577-26125596 None:intergenic 25.0%
! CGGTTAAAAAAAATTAGTTC+GGG - Chr3:26128808-26128827 None:intergenic 25.0%
! GAAATTAATTACATGTTCAG+TGG - Chr3:26125600-26125619 None:intergenic 25.0%
! GAGGAATGTTGTTAATATAA+CGG + Chr3:26127396-26127415 MsG0380012872.01.T01:CDS 25.0%
! GCCAATAAAAAAAATCTTGA+TGG + Chr3:26129589-26129608 MsG0380012872.01.T01:three_prime_UTR 25.0%
! GCGGTTAAAAAAAATTAGTT+CGG - Chr3:26128809-26128828 None:intergenic 25.0%
! GTGAACTAATAATAGAAAAC+TGG - Chr3:26129055-26129074 None:intergenic 25.0%
! GTTAGGTAACTTCAAATAAT+TGG - Chr3:26128374-26128393 None:intergenic 25.0%
! TAAAACAATTAAAGATCGTC+AGG + Chr3:26129217-26129236 MsG0380012872.01.T01:CDS 25.0%
! TAAACATGATATTACAAGGA+TGG - Chr3:26129728-26129747 None:intergenic 25.0%
! TAATTTCGTCATTTAATCCA+GGG + Chr3:26129388-26129407 MsG0380012872.01.T01:three_prime_UTR 25.0%
! TGTTAATATAACGGTTAGTA+GGG + Chr3:26127405-26127424 MsG0380012872.01.T01:CDS 25.0%
! TTATGTTGTTGTGTTTCATT+TGG - Chr3:26125478-26125497 None:intergenic 25.0%
! TTGTTAATATAACGGTTAGT+AGG + Chr3:26127404-26127423 MsG0380012872.01.T01:CDS 25.0%
! TTGTTGAATTCAAATACTTG+AGG + Chr3:26126547-26126566 MsG0380012872.01.T01:intron 25.0%
!! AACTGGTTTAATTACAATGT+AGG - Chr3:26129038-26129057 None:intergenic 25.0%
!! ATCACAGTAAAATGTGATTT+TGG - Chr3:26127983-26128002 None:intergenic 25.0%
!! ATGCAATCAATTTTCAGAAA+TGG + Chr3:26127634-26127653 MsG0380012872.01.T01:CDS 25.0%
!! ATTCAAGTATTCAACTCTTT+TGG - Chr3:26129565-26129584 None:intergenic 25.0%
!! CTAAACTACTAACCAAATTT+TGG + Chr3:26128952-26128971 MsG0380012872.01.T01:intron 25.0%
!! TAGAAAATGGCCAATTTTTA+TGG + Chr3:26127012-26127031 MsG0380012872.01.T01:CDS 25.0%
!! TGGAATTTTGAATAAATGTG+GGG + Chr3:26129660-26129679 MsG0380012872.01.T01:three_prime_UTR 25.0%
!! TTATCAAACAATCTGTTTTC+TGG - Chr3:26129200-26129219 None:intergenic 25.0%
!!! AAAGTATTGACATGAACAAT+GGG - Chr3:26126256-26126275 None:intergenic 25.0%
!!! ATGTCCATGAGTTTTATTTT+AGG + Chr3:26129871-26129890 MsG0380012872.01.T01:intron 25.0%
!!! GCATAATTCTTGCTTTTTTT+TGG + Chr3:26126978-26126997 MsG0380012872.01.T01:CDS 25.0%
!!! GCCATCAAGATTTTTTTTAT+TGG - Chr3:26129593-26129612 None:intergenic 25.0%
!!! TAAAGTATTGACATGAACAA+TGG - Chr3:26126257-26126276 None:intergenic 25.0%
!!! TACTTTTAGGATATTCCATA+TGG + Chr3:26129766-26129785 MsG0380012872.01.T01:three_prime_UTR 25.0%
!!! TGTCCATGAGTTTTATTTTA+GGG + Chr3:26129872-26129891 MsG0380012872.01.T01:intron 25.0%
AAATCACTGAATTTGGACAT+CGG - Chr3:26127229-26127248 None:intergenic 30.0%
AACAAATTTGAAAGACGGTA+GGG - Chr3:26128304-26128323 None:intergenic 30.0%
AAGAAAAAGAAACATACCTG+TGG - Chr3:26126116-26126135 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG - Chr3:26129975-26129994 None:intergenic 30.0%
AGCTCAATTGAATTGAAGTA+AGG - Chr3:26126227-26126246 None:intergenic 30.0%
CAATAAGAAAAGGAACTATG+TGG + Chr3:26128166-26128185 MsG0380012872.01.T01:intron 30.0%
CTAATTTCGTCATTTAATCC+AGG + Chr3:26129387-26129406 MsG0380012872.01.T01:three_prime_UTR 30.0%
GACTTAGAAGATATACTTCA+AGG + Chr3:26129285-26129304 MsG0380012872.01.T01:CDS 30.0%
GATTCTTGTGGATAACTATA+TGG + Chr3:26127281-26127300 MsG0380012872.01.T01:CDS 30.0%
GTTATATCAGCATCTACTAT+TGG - Chr3:26128496-26128515 None:intergenic 30.0%
TATTCATCACAATCCTCAAA+GGG - Chr3:26125959-26125978 None:intergenic 30.0%
TCGATTCAAATCACTGAATT+TGG - Chr3:26127236-26127255 None:intergenic 30.0%
TCTTTACTCACATTCTTCAT+TGG + Chr3:26128619-26128638 MsG0380012872.01.T01:CDS 30.0%
TGTAATTGAGTCCCAAAATT+TGG - Chr3:26128967-26128986 None:intergenic 30.0%
TGTTATAAAATCATTGAGGC+TGG + Chr3:26130263-26130282 MsG0380012872.01.T01:three_prime_UTR 30.0%
TGTTGGATTCCTTTATTACA+CGG + Chr3:26128277-26128296 MsG0380012872.01.T01:intron 30.0%
TTACAATTTATCTGCATCCA+GGG - Chr3:26129946-26129965 None:intergenic 30.0%
TTCCCCTAAAATAAAACTCA+TGG - Chr3:26129878-26129897 None:intergenic 30.0%
TTGCATATTATCTGCATTCA+GGG + Chr3:26130096-26130115 MsG0380012872.01.T01:intron 30.0%
TTTACAATTTATCTGCATCC+AGG - Chr3:26129947-26129966 None:intergenic 30.0%
TTTCAGAAATGGCAATAGTT+GGG + Chr3:26127645-26127664 MsG0380012872.01.T01:CDS 30.0%
TTTCGGATTATATGATCTGT+TGG + Chr3:26128260-26128279 MsG0380012872.01.T01:intron 30.0%
TTTGCATATTATCTGCATTC+AGG + Chr3:26130095-26130114 MsG0380012872.01.T01:intron 30.0%
! AAAAAAAATCTTGATGGCTG+AGG + Chr3:26129595-26129614 MsG0380012872.01.T01:three_prime_UTR 30.0%
! ATGAAGGGTATAATGTTTCA+AGG + Chr3:26125910-26125929 MsG0380012872.01.T01:CDS 30.0%
! ATTCTTCATTGGATACCTTT+TGG + Chr3:26128630-26128649 MsG0380012872.01.T01:CDS 30.0%
! CACATAGTTCCTTTTCTTAT+TGG - Chr3:26128168-26128187 None:intergenic 30.0%
! CATCAAACTCTTTTCTGTTT+CGG + Chr3:26128243-26128262 MsG0380012872.01.T01:intron 30.0%
! TATGTGATAATGTGCAACAA+GGG - Chr3:26128337-26128356 None:intergenic 30.0%
! TTTTCAGAAATGGCAATAGT+TGG + Chr3:26127644-26127663 MsG0380012872.01.T01:CDS 30.0%
! TTTTTGTTAAAGGGTTATGC+AGG + Chr3:26126378-26126397 MsG0380012872.01.T01:intron 30.0%
!! ATTTGGGTTTCTAAAGTTCA+AGG + Chr3:26128886-26128905 MsG0380012872.01.T01:intron 30.0%
!! ATTTTAAAAATCCAAGGACG+CGG - Chr3:26128828-26128847 None:intergenic 30.0%
!! TTCTTTGTAATGGGTAATGA+GGG + Chr3:26126452-26126471 MsG0380012872.01.T01:intron 30.0%
!! TTTCTTTGTAATGGGTAATG+AGG + Chr3:26126451-26126470 MsG0380012872.01.T01:intron 30.0%
!!! ATTCTTGCTTTTTTTTGGCA+AGG + Chr3:26126983-26127002 MsG0380012872.01.T01:CDS 30.0%
!!! GTCCATGAGTTTTATTTTAG+GGG + Chr3:26129873-26129892 MsG0380012872.01.T01:intron 30.0%
!!! GTTGTTCATGTCAGTTTTTT+TGG + Chr3:26126175-26126194 MsG0380012872.01.T01:intron 30.0%
!!! TTTTAGGATATTCCATATGG+TGG + Chr3:26129769-26129788 MsG0380012872.01.T01:three_prime_UTR 30.0%
AAAAAGAAACATACCTGTGG+TGG - Chr3:26126113-26126132 None:intergenic 35.0%
AAAACCTATCTCTAATTCCC+TGG - Chr3:26129408-26129427 None:intergenic 35.0%
AAAGAAGGAAGAAGGGTTAA+GGG + Chr3:26125779-26125798 MsG0380012872.01.T01:CDS 35.0%
AACCATTAGCTGTAACAATG+CGG - Chr3:26128048-26128067 None:intergenic 35.0%
ACTAACGAAGTCTACATTCA+GGG - Chr3:26130039-26130058 None:intergenic 35.0%
ACTAATGCGATGATAACCAA+AGG - Chr3:26127346-26127365 None:intergenic 35.0%
ATAAAATCATTGAGGCTGGT+TGG + Chr3:26130267-26130286 MsG0380012872.01.T01:three_prime_UTR 35.0%
ATATGGACTTTAGCAGTAGT+TGG + Chr3:26127298-26127317 MsG0380012872.01.T01:CDS 35.0%
CAACAAATTTGAAAGACGGT+AGG - Chr3:26128305-26128324 None:intergenic 35.0%
CATGTCTTCCTTCTCAAATA+GGG - Chr3:26128470-26128489 None:intergenic 35.0%
CATTACAAAACCTCTTCCAT+AGG - Chr3:26128428-26128447 None:intergenic 35.0%
CATTGTTACAGCTAATGGTT+TGG + Chr3:26128048-26128067 MsG0380012872.01.T01:intron 35.0%
CTATGTGGCTTAGATTTGAT+TGG + Chr3:26128181-26128200 MsG0380012872.01.T01:intron 35.0%
CTATTCATCACAATCCTCAA+AGG - Chr3:26125960-26125979 None:intergenic 35.0%
CTTCTTGAATTAAGTGTCAC+CGG - Chr3:26126776-26126795 None:intergenic 35.0%
GAAGAATGTGAGTAAAGACA+GGG - Chr3:26128617-26128636 None:intergenic 35.0%
GAAGCAAATAAGAAGAATCC+CGG - Chr3:26127080-26127099 None:intergenic 35.0%
GACTAACAAAGTCTACATTC+AGG - Chr3:26129976-26129995 None:intergenic 35.0%
GATATGAAAACTGCTCTTAG+TGG + Chr3:26129525-26129544 MsG0380012872.01.T01:three_prime_UTR 35.0%
GGTATATGAGTGCAAATTGT+TGG + Chr3:26127763-26127782 MsG0380012872.01.T01:intron 35.0%
GTTAAAAACTGGTCGTGAAT+TGG + Chr3:26129244-26129263 MsG0380012872.01.T01:CDS 35.0%
GTTTGTCTACTATGCTATGT+AGG + Chr3:26128694-26128713 MsG0380012872.01.T01:intron 35.0%
TAATCCAGGGAATTAGAGAT+AGG + Chr3:26129401-26129420 MsG0380012872.01.T01:three_prime_UTR 35.0%
TATTGTTAGGTATGCGTAGA+AGG + Chr3:26129808-26129827 MsG0380012872.01.T01:three_prime_UTR 35.0%
TCAAATAAACACGCGAATGA+GGG - Chr3:26128126-26128145 None:intergenic 35.0%
TCAGGGACTAAATTGACTAA+CGG - Chr3:26129990-26130009 None:intergenic 35.0%
TGAAGAATGTGAGTAAAGAC+AGG - Chr3:26128618-26128637 None:intergenic 35.0%
TTGAGTATGTGTTGAACACT+CGG + Chr3:26128142-26128161 MsG0380012872.01.T01:intron 35.0%
TTTGAAGAAGATGACGTTAC+TGG - Chr3:26125502-26125521 None:intergenic 35.0%
! AATGTGATTTTGGATGACCA+TGG - Chr3:26127973-26127992 None:intergenic 35.0%
! ATGATGGAAAGAAGGAAGAA+GGG + Chr3:26125772-26125791 MsG0380012872.01.T01:CDS 35.0%
! CTATGTGATAATGTGCAACA+AGG - Chr3:26128338-26128357 None:intergenic 35.0%
! GATGTATTTTCTTCCACAAG+TGG + Chr3:26126937-26126956 MsG0380012872.01.T01:CDS 35.0%
! GGCTATGAGTACATTTGTTA+TGG + Chr3:26128069-26128088 MsG0380012872.01.T01:intron 35.0%
! TGATGATGATGATGATGATG+AGG + Chr3:26125836-26125855 MsG0380012872.01.T01:CDS 35.0%
! TTCATTGGATACCTTTTGGT+TGG + Chr3:26128634-26128653 MsG0380012872.01.T01:intron 35.0%
!! AAAGATGGATGATGGAAAGA+AGG + Chr3:26125764-26125783 MsG0380012872.01.T01:CDS 35.0%
!! AAGAATCTGGTTCTGTTAAG+AGG + Chr3:26126897-26126916 MsG0380012872.01.T01:CDS 35.0%
!! AATCTTGGAAGTGCTTGTTT+GGG + Chr3:26127499-26127518 MsG0380012872.01.T01:CDS 35.0%
!! CTATGGAAGAGGTTTTGTAA+TGG + Chr3:26128426-26128445 MsG0380012872.01.T01:CDS 35.0%
!! TGTTTCATTGCTTTTGCGAT+TGG + Chr3:26127130-26127149 MsG0380012872.01.T01:CDS 35.0%
!! TTTTTGGTAAGTGGCTATGA+GGG + Chr3:26126596-26126615 MsG0380012872.01.T01:intron 35.0%
!!! ACTTGTTGATTTTGCAGACT+AGG + Chr3:26129114-26129133 MsG0380012872.01.T01:intron 35.0%
!!! ATTTTTGGTAAGTGGCTATG+AGG + Chr3:26126595-26126614 MsG0380012872.01.T01:intron 35.0%
!!! ATTTTTTTTAACCGCGTCCT+TGG + Chr3:26128814-26128833 MsG0380012872.01.T01:intron 35.0%
!!! GAACTTTTATTTTCCGCCTT+TGG + Chr3:26127327-26127346 MsG0380012872.01.T01:CDS 35.0%
!!! TGGTTTTGTTGAGAATGATC+TGG + Chr3:26129621-26129640 MsG0380012872.01.T01:three_prime_UTR 35.0%
!!! TTCATTTTTTCAGCAGCAAC+CGG + Chr3:26126754-26126773 MsG0380012872.01.T01:intron 35.0%
AACACTCGGCCAATAAGAAA+AGG + Chr3:26128156-26128175 MsG0380012872.01.T01:intron 40.0%
AACATTCCTCATAACCTCTG+TGG - Chr3:26127386-26127405 None:intergenic 40.0%
AAGTGAAGGAGCTAGAAAGA+TGG + Chr3:26125749-26125768 MsG0380012872.01.T01:CDS 40.0%
AATGCCACTAAAGTGACTTG+TGG + Chr3:26129701-26129720 MsG0380012872.01.T01:three_prime_UTR 40.0%
AATGCGATGATAACCAAAGG+CGG - Chr3:26127343-26127362 None:intergenic 40.0%
ACCTACTTACTACATGCTTG+CGG + Chr3:26127255-26127274 MsG0380012872.01.T01:CDS 40.0%
ATCCGCATTGTTACAGCTAA+TGG + Chr3:26128043-26128062 MsG0380012872.01.T01:intron 40.0%
ATCGCGTTGTATTACTTGAG+AGG + Chr3:26127430-26127449 MsG0380012872.01.T01:CDS 40.0%
ATTCTCAGCGCTTCAATTGT+TGG - Chr3:26127538-26127557 None:intergenic 40.0%
CAAGAGCGATAGCTAGTAAT+TGG - Chr3:26126838-26126857 None:intergenic 40.0%
CAATAGTTGGGCATATGTAC+AGG + Chr3:26127657-26127676 MsG0380012872.01.T01:CDS 40.0%
CAGATTCTTGTACTAGTCCT+TGG - Chr3:26126886-26126905 None:intergenic 40.0%
CCATGTCTTCCTTCTCAAAT+AGG - Chr3:26128471-26128490 None:intergenic 40.0%
CCTATTTGAGAAGGAAGACA+TGG + Chr3:26128468-26128487 MsG0380012872.01.T01:CDS 40.0%
CTCAAATAAACACGCGAATG+AGG - Chr3:26128127-26128146 None:intergenic 40.0%
GAAAACTGCTCTTAGTGGAA+GGG + Chr3:26129530-26129549 MsG0380012872.01.T01:three_prime_UTR 40.0%
GAAAGAAGGAAGAAGGGTTA+AGG + Chr3:26125778-26125797 MsG0380012872.01.T01:CDS 40.0%
GACTAACGAAGTCTACATTC+AGG - Chr3:26130040-26130059 None:intergenic 40.0%
GATGTTGAGAATGTTGCTCA+TGG + Chr3:26125867-26125886 MsG0380012872.01.T01:CDS 40.0%
GATTTGGAGAAAGGTGAAGT+TGG + Chr3:26125801-26125820 MsG0380012872.01.T01:CDS 40.0%
GGCAAGGTGCAATTAGAAAA+TGG + Chr3:26126999-26127018 MsG0380012872.01.T01:CDS 40.0%
GTATATCTTCTAAGTCCCCT+TGG - Chr3:26129281-26129300 None:intergenic 40.0%
GTGGAGAGCGAATATAAACA+AGG - Chr3:26126816-26126835 None:intergenic 40.0%
GTGGTCATGATGATCATGAA+GGG + Chr3:26125895-26125914 MsG0380012872.01.T01:CDS 40.0%
TAAACCCTACTAACCCTTTG+AGG + Chr3:26125943-26125962 MsG0380012872.01.T01:CDS 40.0%
TAACAACTCACACAAGCATG+AGG - Chr3:26129155-26129174 None:intergenic 40.0%
TAATGGCATCACAAGACACA+TGG + Chr3:26128443-26128462 MsG0380012872.01.T01:CDS 40.0%
TCATAACAGATTGCAGCCTA+TGG + Chr3:26128409-26128428 MsG0380012872.01.T01:intron 40.0%
TGAAAACTGCTCTTAGTGGA+AGG + Chr3:26129529-26129548 MsG0380012872.01.T01:three_prime_UTR 40.0%
TGTTAGGTGGATGAAAGTGA+AGG + Chr3:26125735-26125754 MsG0380012872.01.T01:intron 40.0%
TTTGCAGACTAGGATTGCAA+TGG + Chr3:26129124-26129143 MsG0380012872.01.T01:intron 40.0%
! AATGATGGAACTCCACCATA+TGG - Chr3:26129784-26129803 None:intergenic 40.0%
! ACAATCCTCAAAGGGTTAGT+AGG - Chr3:26125951-26125970 None:intergenic 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG + Chr3:26129900-26129919 MsG0380012872.01.T01:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG - Chr3:26129919-26129900 None:intergenic 40.0%
! CAAGGACTAGTACAAGAATC+TGG + Chr3:26126884-26126903 MsG0380012872.01.T01:CDS 40.0%
! CAATCCTCAAAGGGTTAGTA+GGG - Chr3:26125950-26125969 None:intergenic 40.0%
! CATCGCATTAGTGTTGAGTT+TGG + Chr3:26127354-26127373 MsG0380012872.01.T01:CDS 40.0%
! CATTAGTGTTGAGTTTGGCT+TGG + Chr3:26127359-26127378 MsG0380012872.01.T01:CDS 40.0%
! GTGTTATTGTTGTAGCTGCT+TGG + Chr3:26128560-26128579 MsG0380012872.01.T01:CDS 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG + Chr3:26129899-26129918 MsG0380012872.01.T01:intron 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG - Chr3:26129918-26129899 None:intergenic 40.0%
!! AATAAGGGGTACCAACCAAA+AGG - Chr3:26128648-26128667 None:intergenic 40.0%
!! ATCTTGGAAGTGCTTGTTTG+GGG + Chr3:26127500-26127519 MsG0380012872.01.T01:CDS 40.0%
!! ATTGCTTTTGCGATTGGCAA+TGG + Chr3:26127136-26127155 MsG0380012872.01.T01:CDS 40.0%
!! CGTCAGGCTTTGTTAAAAAC+TGG + Chr3:26129233-26129252 MsG0380012872.01.T01:CDS 40.0%
!! GAATCTTGGAAGTGCTTGTT+TGG + Chr3:26127498-26127517 MsG0380012872.01.T01:CDS 40.0%
!! GATGATGGAAAGAAGGAAGA+AGG + Chr3:26125771-26125790 MsG0380012872.01.T01:CDS 40.0%
!! TGAGAGCGTTGAGATTTCTT+AGG - Chr3:26126011-26126030 None:intergenic 40.0%
AAAGTTGCAGCTTCCACTTG+TGG - Chr3:26126953-26126972 None:intergenic 45.0%
AATGTTGCTCATGGTCATGG+TGG + Chr3:26125876-26125895 MsG0380012872.01.T01:CDS 45.0%
AATTGGCTGTACCTACACCA+AGG + Chr3:26129261-26129280 MsG0380012872.01.T01:CDS 45.0%
ACTAACGGAGTCTGCATTCA+GGG - Chr3:26130007-26130026 None:intergenic 45.0%
ATGAGGGAAATGTGGTGACT+AGG - Chr3:26128110-26128129 None:intergenic 45.0%
ATTGGCTGTACCTACACCAA+GGG + Chr3:26129262-26129281 MsG0380012872.01.T01:CDS 45.0%
CACATGGTCCCTATTTGAGA+AGG + Chr3:26128459-26128478 MsG0380012872.01.T01:CDS 45.0%
CGATTCGTCAATTTAGTCCC+TGG + Chr3:26129926-26129945 MsG0380012872.01.T01:intron 45.0%
CGTTGAGATTTCTTAGGAGG+AGG - Chr3:26126005-26126024 None:intergenic 45.0%
CTTGTGTTCAAGAGAGTCCA+AGG + Chr3:26126866-26126885 MsG0380012872.01.T01:CDS 45.0%
GAAACAAACACCAACACCGT+CGG - Chr3:26127116-26127135 None:intergenic 45.0%
GAATGTGAGTAAAGACAGGG+TGG - Chr3:26128614-26128633 None:intergenic 45.0%
GACGAATCGTTTCCCATTCA+GGG - Chr3:26129915-26129934 None:intergenic 45.0%
GAGAATGTTGCTCATGGTCA+TGG + Chr3:26125873-26125892 MsG0380012872.01.T01:CDS 45.0%
GAGCGATAGCTAGTAATTGG+TGG - Chr3:26126835-26126854 None:intergenic 45.0%
GGAAGAAGGGTTAAGGGATT+TGG + Chr3:26125785-26125804 MsG0380012872.01.T01:CDS 45.0%
GGAGCTAGAAAGATGGATGA+TGG + Chr3:26125756-26125775 MsG0380012872.01.T01:CDS 45.0%
GGGTTAAGGGATTTGGAGAA+AGG + Chr3:26125792-26125811 MsG0380012872.01.T01:CDS 45.0%
GGTGGTCATGATGATCATGA+AGG + Chr3:26125894-26125913 MsG0380012872.01.T01:CDS 45.0%
GGTGGTTGTGGAGTTTGAAT+TGG - Chr3:26126071-26126090 None:intergenic 45.0%
TATGCAAAACAGTCCCTGCA+TGG - Chr3:26130083-26130102 None:intergenic 45.0%
TCCCTGAAATTGACCATGCA+GGG + Chr3:26130067-26130086 MsG0380012872.01.T01:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG - Chr3:26130071-26130090 None:intergenic 45.0%
TGACGAATCGTTTCCCATTC+AGG - Chr3:26129916-26129935 None:intergenic 45.0%
TGAGATTTCTTAGGAGGAGG+AGG - Chr3:26126002-26126021 None:intergenic 45.0%
TGTGAGGAAGCAAATTGAGC+TGG - Chr3:26128518-26128537 None:intergenic 45.0%
TGTGGAGTTTGAATTGGTGC+TGG - Chr3:26126065-26126084 None:intergenic 45.0%
TTCCTCACAGGAGTTTGTAG+TGG + Chr3:26128529-26128548 MsG0380012872.01.T01:CDS 45.0%
TTTGTGATGTCTCTTGCAGC+CGG + Chr3:26127058-26127077 MsG0380012872.01.T01:CDS 45.0%
! AATCTTGATGGCTGAGGAAG+TGG + Chr3:26129601-26129620 MsG0380012872.01.T01:three_prime_UTR 45.0%
! AGCGCTGAGAATTGTTGCTA+GGG + Chr3:26127546-26127565 MsG0380012872.01.T01:CDS 45.0%
! AGCTCAATTTGCTTCCTCAC+AGG + Chr3:26128517-26128536 MsG0380012872.01.T01:CDS 45.0%
! GCAATGGCTTGTATGGTTGT+TGG + Chr3:26127152-26127171 MsG0380012872.01.T01:CDS 45.0%
! GTCACTTTAGTCCCTGAATG+GGG - Chr3:26129920-26129901 None:intergenic 45.0%
! TGGACCACAAGTCACTTTAG+TGG - Chr3:26129708-26129727 None:intergenic 45.0%
! TTGTTGCGCTCGTTGTTGTT+TGG + Chr3:26127606-26127625 MsG0380012872.01.T01:CDS 45.0%
!! AAGCGCTGAGAATTGTTGCT+AGG + Chr3:26127545-26127564 MsG0380012872.01.T01:CDS 45.0%
!! ATTGGTGCTGGTGTTGGTAT+AGG - Chr3:26126053-26126072 None:intergenic 45.0%
!! GAGCGTTGAGATTTCTTAGG+AGG - Chr3:26126008-26126027 None:intergenic 45.0%
!! GTTTGAATTGGTGCTGGTGT+TGG - Chr3:26126059-26126078 None:intergenic 45.0%
!! TGCTGGTGTTGGTATAGGAA+TGG - Chr3:26126048-26126067 None:intergenic 45.0%
!! TGTTGCGCTCGTTGTTGTTT+GGG + Chr3:26127607-26127626 MsG0380012872.01.T01:CDS 45.0%
!! CTAATTTATATAAAAATTTA+TGG + Chr3:26128917-26128936 MsG0380012872.01.T01:intron 5.0%
!!! ACATTTTTAATTTTTATTTT+TGG + Chr3:26126580-26126599 MsG0380012872.01.T01:intron 5.0%
!!! ACTAAATTTATTTTTTAATA+TGG + Chr3:26126724-26126743 MsG0380012872.01.T01:intron 5.0%
!!! TTTTAAAATAATTTATAATC+AGG + Chr3:26128839-26128858 MsG0380012872.01.T01:intron 5.0%
!!! TTTTTTTAACATAAAATAAA+GGG - Chr3:26130170-26130189 None:intergenic 5.0%
!!! TTTTTTTTAACATAAAATAA+AGG - Chr3:26130171-26130190 None:intergenic 5.0%
ACACGCGAATGAGGGAAATG+TGG - Chr3:26128118-26128137 None:intergenic 50.0%
ACTTACTACATGCTTGCGGC+TGG + Chr3:26127259-26127278 MsG0380012872.01.T01:CDS 50.0%
AGCCACTACAAACTCCTGTG+AGG - Chr3:26128534-26128553 None:intergenic 50.0%
CAGATTGCAGCCTATGGAAG+AGG + Chr3:26128415-26128434 MsG0380012872.01.T01:intron 50.0%
CATACCTGTGGTGGTTGTTG+CGG - Chr3:26126104-26126123 None:intergenic 50.0%
CGCTGAGAATTGTTGCTAGG+GGG + Chr3:26127548-26127567 MsG0380012872.01.T01:CDS 50.0%
CGGTAGGGTCCGTGTAATAA+AGG - Chr3:26128289-26128308 None:intergenic 50.0%
CTTGGACCACAGAGGTTATG+AGG + Chr3:26127377-26127396 MsG0380012872.01.T01:CDS 50.0%
GACGAATCGTTCCCCATTCA+GGG + Chr3:26130127-26130146 MsG0380012872.01.T01:intron 50.0%
GACTAACGGAGTCTGCATTC+AGG - Chr3:26130008-26130027 None:intergenic 50.0%
GCCGCAAGCATGTAGTAAGT+AGG - Chr3:26127259-26127278 None:intergenic 50.0%
GCGCTGAGAATTGTTGCTAG+GGG + Chr3:26127547-26127566 MsG0380012872.01.T01:CDS 50.0%
GTCCCTGAAATTGACCATGC+AGG + Chr3:26130066-26130085 MsG0380012872.01.T01:intron 50.0%
GTCCCTGCATGGTCAATTTC+AGG - Chr3:26130072-26130091 None:intergenic 50.0%
TGACGAATCGTTCCCCATTC+AGG + Chr3:26130126-26130145 MsG0380012872.01.T01:intron 50.0%
TTCCAAAAGCCTCCAACCGA+CGG + Chr3:26127097-26127116 MsG0380012872.01.T01:CDS 50.0%
TTGGCTGTACCTACACCAAG+GGG + Chr3:26129263-26129282 MsG0380012872.01.T01:CDS 50.0%
TTGTGATGTCTCTTGCAGCC+GGG + Chr3:26127059-26127078 MsG0380012872.01.T01:CDS 50.0%
! AGGGGGCTGAATTTGCTTGA+GGG + Chr3:26127565-26127584 MsG0380012872.01.T01:CDS 50.0%
! ATCATTGAGGCTGGTTGGTG+TGG + Chr3:26130272-26130291 MsG0380012872.01.T01:three_prime_UTR 50.0%
! CTGGCTTGAAGAGCCATCAT+TGG + Chr3:26129640-26129659 MsG0380012872.01.T01:three_prime_UTR 50.0%
! CTTCTAAGTCCCCTTGGTGT+AGG - Chr3:26129275-26129294 None:intergenic 50.0%
! GCGATTGGCAATGGCTTGTA+TGG + Chr3:26127145-26127164 MsG0380012872.01.T01:CDS 50.0%
! TAGGGGGCTGAATTTGCTTG+AGG + Chr3:26127564-26127583 MsG0380012872.01.T01:CDS 50.0%
! TGGTGACTAGGTTCGATTCG+AGG - Chr3:26128098-26128117 None:intergenic 50.0%
!! AGAGCGTTGACTCGGAATCT+TGG + Chr3:26127484-26127503 MsG0380012872.01.T01:CDS 50.0%
!! GCTTTCTGAGAGCGTTGACT+CGG + Chr3:26127476-26127495 MsG0380012872.01.T01:CDS 50.0%
CAAACACCAACACCGTCGGT+TGG - Chr3:26127112-26127131 None:intergenic 55.0%
TGCTTGCGGCTGGATTCTTG+TGG + Chr3:26127269-26127288 MsG0380012872.01.T01:CDS 55.0%
!! GAGTTTGGCTTGGACCACAG+AGG + Chr3:26127369-26127388 MsG0380012872.01.T01:CDS 55.0%
AAGCCTCCAACCGACGGTGT+TGG + Chr3:26127103-26127122 MsG0380012872.01.T01:CDS 60.0%
ACCACCGCAACAACCACCAC+AGG + Chr3:26126097-26126116 MsG0380012872.01.T01:CDS 60.0%
ACCTGTGGTGGTTGTTGCGG+TGG - Chr3:26126101-26126120 None:intergenic 60.0%
TGTGGTGGTTGTTGCGGTGG+TGG - Chr3:26126098-26126117 None:intergenic 60.0%
! ACACCAACACCGTCGGTTGG+AGG - Chr3:26127109-26127128 None:intergenic 60.0%
!! CACCGTCGGTTGGAGGCTTT+TGG - Chr3:26127102-26127121 None:intergenic 60.0%
! GGTGGTTGTTGCGGTGGTGG+TGG - Chr3:26126095-26126114 None:intergenic 65.0%
!! GGTGGTGGTGGTGGTGGTTG+TGG - Chr3:26126083-26126102 None:intergenic 65.0%
!! GGTTGTTGCGGTGGTGGTGG+TGG - Chr3:26126092-26126111 None:intergenic 65.0%
!! TGTTGCGGTGGTGGTGGTGG+TGG - Chr3:26126089-26126108 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 26125453 26130313 26125453 ID=MsG0380012872.01;Name=MsG0380012872.01
Chr3 mRNA 26125453 26130313 26125453 ID=MsG0380012872.01.T01;Parent=MsG0380012872.01;Name=MsG0380012872.01.T01;_AED=0.43;_eAED=0.43;_QI=137|1|1|1|0.8|0.66|6|713|574
Chr3 exon 26125453 26125607 26125453 ID=MsG0380012872.01.T01:exon:14189;Parent=MsG0380012872.01.T01
Chr3 exon 26125741 26126118 26125741 ID=MsG0380012872.01.T01:exon:14190;Parent=MsG0380012872.01.T01
Chr3 exon 26126767 26127678 26126767 ID=MsG0380012872.01.T01:exon:14191;Parent=MsG0380012872.01.T01
Chr3 exon 26128418 26128651 26128418 ID=MsG0380012872.01.T01:exon:14192;Parent=MsG0380012872.01.T01
Chr3 exon 26129131 26129887 26129131 ID=MsG0380012872.01.T01:exon:14193;Parent=MsG0380012872.01.T01
Chr3 exon 26130175 26130313 26130175 ID=MsG0380012872.01.T01:exon:14194;Parent=MsG0380012872.01.T01
Chr3 five_prime_UTR 26125453 26125589 26125453 ID=MsG0380012872.01.T01:five_prime_utr;Parent=MsG0380012872.01.T01
Chr3 CDS 26125590 26125607 26125590 ID=MsG0380012872.01.T01:cds;Parent=MsG0380012872.01.T01
Chr3 CDS 26125741 26126118 26125741 ID=MsG0380012872.01.T01:cds;Parent=MsG0380012872.01.T01
Chr3 CDS 26126767 26127678 26126767 ID=MsG0380012872.01.T01:cds;Parent=MsG0380012872.01.T01
Chr3 CDS 26128418 26128651 26128418 ID=MsG0380012872.01.T01:cds;Parent=MsG0380012872.01.T01
Chr3 CDS 26129131 26129313 26129131 ID=MsG0380012872.01.T01:cds;Parent=MsG0380012872.01.T01
Chr3 three_prime_UTR 26129314 26129887 26129314 ID=MsG0380012872.01.T01:three_prime_utr;Parent=MsG0380012872.01.T01
Chr3 three_prime_UTR 26130175 26130313 26130175 ID=MsG0380012872.01.T01:three_prime_utr;Parent=MsG0380012872.01.T01
Gene Sequence

>MsG0380012872.01.T01

ATGGGTGCCACTGAACATGTGGATGAAAGTGAAGGAGCTAGAAAGATGGATGATGGAAAGAAGGAAGAAGGGTTAAGGGATTTGGAGAAAGGTGAAGTTGGAAAGAATGATGTTGATGATGATGATGATGATGATGATGATGAGGATGTTGAGAATGTTGCTCATGGTCATGGTGGTCATGATGATCATGAAGGGTATAATGTTTCAAGGTTTCATAGATTAAACCCTACTAACCCTTTGAGGATTGTGATGAATAGCAATACAAGAGTTGCAAAACCTCCTCCTCCTAAGAAATCTCAACGCTCTCATACTCATACACGTTCCATTCCTATACCAACACCAGCACCAATTCAAACTCCACAACCACCACCACCACCACCGCAACAACCACCACAGCAGCAACCGGTGACACTTAATTCAAGAAGATATACTAACAAAATATCCTTGTTTATATTCGCTCTCCACCAATTACTAGCTATCGCTCTTGTGTGTTTTCTTGTGTTCAAGAGAGTCCAAGGACTAGTACAAGAATCTGGTTCTGTTAAGAGGAAAGAAAAAAGAGTGTTGATGTATTTTCTTCCACAAGTGGAAGCTGCAACTTTTATGAGCATAATTCTTGCTTTTTTTTGGCAAGGTGCAATTAGAAAATGGCCAATTTTTATGGTTCATTTTATACTTTGGTTTACTTTTGTGATGTCTCTTGCAGCCGGGATTCTTCTTATTTGCTTCCAAAAGCCTCCAACCGACGGTGTTGGTGTTTGTTTCATTGCTTTTGCGATTGGCAATGGCTTGTATGGTTGTTGGATTAGTCATAGAATTAAGTTTTGTTGTAAGATATTGACTTTATCACTTCAACCGATGTCCAAATTCAGTGATTTGAATCGACCTACTTACTACATGCTTGCGGCTGGATTCTTGTGGATAACTATATGGACTTTAGCAGTAGTTGGAGCTTTGAACTTTTATTTTCCGCCTTTGGTTATCATCGCATTAGTGTTGAGTTTGGCTTGGACCACAGAGGTTATGAGGAATGTTGTTAATATAACGGTTAGTAGGGTTATCGCGTTGTATTACTTGAGAGGAATGCAATCTAGCACACAATTTTGCTTTCTGAGAGCGTTGACTCGGAATCTTGGAAGTGCTTGTTTGGGGTCTCTATTTGTTCCAACAATTGAAGCGCTGAGAATTGTTGCTAGGGGGCTGAATTTGCTTGAGGGCGAAGATGAGTTCATGTTTTGTTGCGCTCGTTGTTGTTTGGGAGTCATGCAATCAATTTTCAGAAATGGCAATAGTTGGGCATATGTACAGATTGCAGCCTATGGAAGAGGTTTTGTAATGGCATCACAAGACACATGGTCCCTATTTGAGAAGGAAGACATGGTGCCAATAGTAGATGCTGATATAACCAGCTCAATTTGCTTCCTCACAGGAGTTTGTAGTGGCTCTATGTGTGTTATTGTTGTAGCTGCTTGGACTCACACTGTACACAGAAGTTTCACAGCCACCCTGTCTTTACTCACATTCTTCATTGGATACCTTTTGACTAGGATTGCAATGGCAGTGCCTCATGCTTGTGTGAGTTGTTATTATGTATGCTATGCTGAAAATCCAGAAAACAGATTGTTTGATAAAACAATTAAAGATCGTCAGGCTTTGTTAAAAACTGGTCGTGAATTGGCTGTACCTACACCAAGGGGACTTAGAAGATATACTTCAAGGTCTTAA

Protein sequence

>MsG0380012872.01.T01

MGATEHVDESEGARKMDDGKKEEGLRDLEKGEVGKNDVDDDDDDDDDEDVENVAHGHGGHDDHEGYNVSRFHRLNPTNPLRIVMNSNTRVAKPPPPKKSQRSHTHTRSIPIPTPAPIQTPQPPPPPPQQPPQQQPVTLNSRRYTNKISLFIFALHQLLAIALVCFLVFKRVQGLVQESGSVKRKEKRVLMYFLPQVEAATFMSIILAFFWQGAIRKWPIFMVHFILWFTFVMSLAAGILLICFQKPPTDGVGVCFIAFAIGNGLYGCWISHRIKFCCKILTLSLQPMSKFSDLNRPTYYMLAAGFLWITIWTLAVVGALNFYFPPLVIIALVLSLAWTTEVMRNVVNITVSRVIALYYLRGMQSSTQFCFLRALTRNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFCCARCCLGVMQSIFRNGNSWAYVQIAAYGRGFVMASQDTWSLFEKEDMVPIVDADITSSICFLTGVCSGSMCVIVVAAWTHTVHRSFTATLSLLTFFIGYLLTRIAMAVPHACVSCYYVCYAENPENRLFDKTIKDRQALLKTGRELAVPTPRGLRRYTSRS*