Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016967.01.T01 | XP_003602790.1 | 74.194 | 279 | 37 | 3 | 25 | 303 | 23 | 266 | 3.76E-104 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016967.01.T01 | Q9C5D3 | 65.244 | 164 | 55 | 2 | 37 | 198 | 74 | 237 | 1.28E-57 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016967.01.T01 | G7J3E0 | 74.194 | 279 | 37 | 3 | 25 | 303 | 23 | 266 | 1.79e-104 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001100.01 | MsG0380016967.01 | 0.805010 | 1.640564e-49 | 8.584544e-47 |
| MsG0180002399.01 | MsG0380016967.01 | 0.806668 | 7.356528e-50 | 4.016198e-47 |
| MsG0180006096.01 | MsG0380016967.01 | 0.803120 | 4.056942e-49 | 2.022042e-46 |
| MsG0380016967.01 | MsG0480018402.01 | 0.808584 | 2.881915e-50 | 1.654087e-47 |
| MsG0380016967.01 | MsG0480022624.01 | 0.821341 | 4.250404e-53 | 3.448671e-50 |
| MsG0380016967.01 | MsG0580028033.01 | 0.803593 | 3.237306e-49 | 1.633383e-46 |
| MsG0380016967.01 | MsG0580029879.01 | 0.810276 | 1.249229e-50 | 7.497945e-48 |
| MsG0380016967.01 | MsG0680030313.01 | 0.811196 | 7.902277e-51 | 4.860320e-48 |
| MsG0380016967.01 | MsG0680030515.01 | 0.824657 | 7.166296e-54 | 6.388694e-51 |
| MsG0380016967.01 | MsG0780037701.01 | 0.820432 | 6.881417e-53 | 5.444210e-50 |
| MsG0380016967.01 | MsG0880044131.01 | 0.818559 | 1.840297e-52 | 1.382114e-49 |
| MsG0380016967.01 | MsG0880047267.01 | 0.809292 | 2.033514e-50 | 1.189335e-47 |
| MsG0280008738.01 | MsG0380016967.01 | 0.817711 | 2.862044e-52 | 2.099968e-49 |
| MsG0280009256.01 | MsG0380016967.01 | 0.815283 | 1.000578e-51 | 6.869441e-49 |
| MsG0280010349.01 | MsG0380016967.01 | 0.803391 | 3.565030e-49 | 1.789313e-46 |
| MsG0280010517.01 | MsG0380016967.01 | 0.814799 | 1.281902e-51 | 8.685574e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016967.01.T01 | MTR_3g099030 | 74.194 | 279 | 37 | 3 | 25 | 303 | 23 | 266 | 4.55e-108 | 315 |
| MsG0380016967.01.T01 | MTR_3g099040 | 78.014 | 282 | 55 | 3 | 26 | 303 | 24 | 302 | 1.51e-102 | 302 |
| MsG0380016967.01.T01 | MTR_8g096700 | 53.497 | 286 | 102 | 6 | 35 | 303 | 50 | 321 | 1.61e-79 | 244 |
| MsG0380016967.01.T01 | MTR_4g006650 | 85.714 | 133 | 18 | 1 | 26 | 157 | 157 | 289 | 2.21e-55 | 182 |
| MsG0380016967.01.T01 | MTR_2g026685 | 47.970 | 271 | 106 | 4 | 35 | 303 | 32 | 269 | 1.25e-46 | 158 |
| MsG0380016967.01.T01 | MTR_2g026685 | 47.970 | 271 | 106 | 4 | 35 | 303 | 33 | 270 | 1.29e-46 | 158 |
| MsG0380016967.01.T01 | MTR_2g026685 | 47.710 | 262 | 102 | 4 | 44 | 303 | 1 | 229 | 4.00e-44 | 150 |
| MsG0380016967.01.T01 | MTR_3g093020 | 36.808 | 307 | 165 | 9 | 1 | 302 | 1 | 283 | 2.30e-38 | 137 |
| MsG0380016967.01.T01 | MTR_3g435930 | 31.835 | 267 | 124 | 5 | 38 | 303 | 28 | 237 | 4.69e-31 | 116 |
| MsG0380016967.01.T01 | MTR_5g069180 | 39.623 | 159 | 88 | 4 | 39 | 197 | 56 | 206 | 3.41e-28 | 111 |
| MsG0380016967.01.T01 | MTR_4g057765 | 30.605 | 281 | 154 | 9 | 39 | 303 | 69 | 324 | 3.88e-27 | 108 |
| MsG0380016967.01.T01 | MTR_2g095480 | 36.585 | 164 | 101 | 2 | 35 | 197 | 64 | 225 | 1.12e-25 | 104 |
| MsG0380016967.01.T01 | MTR_1g063210 | 29.305 | 331 | 179 | 7 | 22 | 303 | 9 | 333 | 5.20e-25 | 102 |
| MsG0380016967.01.T01 | MTR_8g010540 | 31.111 | 270 | 143 | 8 | 39 | 302 | 32 | 264 | 1.88e-23 | 97.4 |
| MsG0380016967.01.T01 | MTR_7g101930 | 31.553 | 206 | 104 | 5 | 38 | 218 | 15 | 208 | 2.61e-17 | 81.6 |
| MsG0380016967.01.T01 | MTR_0041s0140 | 31.553 | 206 | 104 | 5 | 38 | 218 | 15 | 208 | 2.65e-17 | 80.1 |
| MsG0380016967.01.T01 | MTR_8g018747 | 48.529 | 68 | 35 | 0 | 130 | 197 | 17 | 84 | 7.29e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016967.01.T01 | AT5G50740 | 47.636 | 275 | 115 | 5 | 38 | 303 | 29 | 283 | 2.62e-70 | 219 |
| MsG0380016967.01.T01 | AT5G50740 | 47.636 | 275 | 115 | 5 | 38 | 303 | 29 | 283 | 2.62e-70 | 219 |
| MsG0380016967.01.T01 | AT5G50740 | 47.636 | 275 | 115 | 5 | 38 | 303 | 36 | 290 | 4.59e-70 | 219 |
| MsG0380016967.01.T01 | AT5G63530 | 65.244 | 164 | 55 | 2 | 37 | 198 | 59 | 222 | 8.18e-59 | 192 |
| MsG0380016967.01.T01 | AT5G63530 | 65.244 | 164 | 55 | 2 | 37 | 198 | 74 | 237 | 1.30e-58 | 192 |
| MsG0380016967.01.T01 | AT5G50740 | 61.475 | 122 | 46 | 1 | 38 | 158 | 29 | 150 | 7.00e-43 | 145 |
| MsG0380016967.01.T01 | AT5G50740 | 61.475 | 122 | 46 | 1 | 38 | 158 | 36 | 157 | 1.17e-42 | 145 |
| MsG0380016967.01.T01 | AT3G02960 | 33.893 | 298 | 131 | 7 | 12 | 303 | 9 | 246 | 1.63e-41 | 144 |
| MsG0380016967.01.T01 | AT5G24580 | 31.724 | 290 | 144 | 7 | 38 | 302 | 58 | 318 | 2.25e-32 | 122 |
| MsG0380016967.01.T01 | AT5G24580 | 31.724 | 290 | 144 | 7 | 38 | 302 | 58 | 318 | 2.25e-32 | 122 |
| MsG0380016967.01.T01 | AT5G24580 | 31.724 | 290 | 144 | 7 | 38 | 302 | 57 | 317 | 2.67e-32 | 122 |
| MsG0380016967.01.T01 | AT5G24580 | 30.690 | 290 | 144 | 8 | 38 | 302 | 58 | 315 | 7.44e-29 | 112 |
| MsG0380016967.01.T01 | AT5G03380 | 26.500 | 400 | 180 | 10 | 8 | 303 | 3 | 392 | 1.22e-24 | 102 |
| MsG0380016967.01.T01 | AT5G03380 | 25.410 | 366 | 170 | 7 | 40 | 303 | 1 | 365 | 1.40e-22 | 96.7 |
| MsG0380016967.01.T01 | AT2G36950 | 30.769 | 338 | 159 | 11 | 38 | 303 | 52 | 386 | 1.49e-22 | 97.1 |
| MsG0380016967.01.T01 | AT5G24580 | 30.116 | 259 | 127 | 7 | 69 | 302 | 2 | 231 | 1.56e-21 | 91.3 |
| MsG0380016967.01.T01 | AT1G29000 | 32.394 | 284 | 155 | 7 | 41 | 303 | 20 | 287 | 4.60e-19 | 85.9 |
| MsG0380016967.01.T01 | AT1G29000 | 32.394 | 284 | 155 | 7 | 41 | 303 | 20 | 287 | 4.60e-19 | 85.9 |
| MsG0380016967.01.T01 | AT5G60800 | 26.421 | 299 | 152 | 7 | 34 | 303 | 24 | 283 | 1.63e-18 | 84.0 |
| MsG0380016967.01.T01 | AT5G60800 | 26.087 | 299 | 153 | 7 | 34 | 303 | 24 | 283 | 1.78e-17 | 81.6 |
| MsG0380016967.01.T01 | AT2G28090 | 30.303 | 165 | 112 | 1 | 35 | 199 | 28 | 189 | 6.72e-11 | 62.0 |
Find 65 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCTCCTCAGGAGGAAT+TGG | 0.234587 | 3:-90114338 | None:intergenic |
| AGCAGAGCCATTGAAGGTTT+TGG | 0.240236 | 3:+90114265 | MsG0380016967.01.T01:CDS |
| TCTTCTTTCTTCTTCTCTTC+AGG | 0.248998 | 3:-90114386 | None:intergenic |
| GAAAACAGAGGAACCGAAAA+AGG | 0.267619 | 3:+90114034 | MsG0380016967.01.T01:CDS |
| CACATGACACTGCAAGCATT+TGG | 0.293855 | 3:-90115650 | None:intergenic |
| TTTCTTCACTTCCTCAGCTT+TGG | 0.322844 | 3:-90115378 | None:intergenic |
| AGCTGAGGAAGTGAAGAAAA+AGG | 0.341456 | 3:+90115382 | MsG0380016967.01.T01:CDS |
| GAATATGTGTACAAGCGAAT+TGG | 0.353264 | 3:+90115311 | MsG0380016967.01.T01:CDS |
| ACATATTCAACCAGCATTGC+TGG | 0.372905 | 3:-90115296 | None:intergenic |
| GAGTTCAGAAGAAGAGTCAT+AGG | 0.384792 | 3:+90114291 | MsG0380016967.01.T01:CDS |
| TCTCCTCCTCAGGAGGAATT+GGG | 0.410403 | 3:-90114337 | None:intergenic |
| ACATGACACTGCAAGCATTT+GGG | 0.419372 | 3:-90115649 | None:intergenic |
| AATATGTGTACAAGCGAATT+GGG | 0.445516 | 3:+90115312 | MsG0380016967.01.T01:CDS |
| TGAGGCCAAGCCACAAGAAA+AGG | 0.446729 | 3:+90115448 | MsG0380016967.01.T01:CDS |
| ACTCTCAGCAAAATCTCTGC+TGG | 0.468207 | 3:-90114125 | None:intergenic |
| AACAGATTGCAAATCTCATA+TGG | 0.468470 | 3:+90114223 | MsG0380016967.01.T01:CDS |
| GAAAGAAGAAGGAGAGGGTG+AGG | 0.470465 | 3:+90115430 | MsG0380016967.01.T01:CDS |
| TGTGTTTGATAGTAAGCAGC+TGG | 0.485114 | 3:-90115590 | None:intergenic |
| AAAATCTCTGCTGGAGGAGG+TGG | 0.486985 | 3:-90114116 | None:intergenic |
| AGCAAAATCTCTGCTGGAGG+AGG | 0.489782 | 3:-90114119 | None:intergenic |
| AAAACGGATACTGAAAATGA+AGG | 0.489857 | 3:+90114594 | MsG0380016967.01.T01:CDS |
| ACTCTCTCCAAAACCTTCAA+TGG | 0.491679 | 3:-90114272 | None:intergenic |
| AGAGAAAGCAGAGCCATTGA+AGG | 0.492377 | 3:+90114259 | MsG0380016967.01.T01:CDS |
| TATGCATGATATGCTATTGT+TGG | 0.501666 | 3:-90115566 | None:intergenic |
| GTGGCAGAGAAGAAAGAAGA+AGG | 0.515613 | 3:+90115419 | MsG0380016967.01.T01:CDS |
| AAAGGAGAAAACTGAAGAAG+TGG | 0.520915 | 3:+90115400 | MsG0380016967.01.T01:CDS |
| GAAAATTGCTGAGGAAGAGA+AGG | 0.523552 | 3:+90114358 | MsG0380016967.01.T01:CDS |
| GGGTATGCATACATATTCAT+TGG | 0.529467 | 3:-90115545 | None:intergenic |
| TCCTCAGGAGGAATTGGGAT+CGG | 0.540660 | 3:-90114332 | None:intergenic |
| CTGAAGATCTGAGGTGCTGG+TGG | 0.541767 | 3:-90115617 | None:intergenic |
| GAGAAGAAAGAAGAAGGAGA+GGG | 0.543233 | 3:+90115425 | MsG0380016967.01.T01:CDS |
| TCTCATATGGTGGTTGTGAA+AGG | 0.544258 | 3:+90114236 | MsG0380016967.01.T01:CDS |
| AGAGAAGAAAGAAGAAGGAG+AGG | 0.546476 | 3:+90115424 | MsG0380016967.01.T01:CDS |
| TCACTGAAGATCTGAGGTGC+TGG | 0.549995 | 3:-90115620 | None:intergenic |
| TCCGATCCCAATTCCTCCTG+AGG | 0.551006 | 3:+90114331 | MsG0380016967.01.T01:CDS |
| ATGCATGATATGCTATTGTT+GGG | 0.553729 | 3:-90115565 | None:intergenic |
| AGTGTATGATCCAGCAATGC+TGG | 0.554050 | 3:+90115286 | MsG0380016967.01.T01:CDS |
| TATGCATACATATTCATTGG+TGG | 0.555500 | 3:-90115542 | None:intergenic |
| AACTCTGACGTAAGAGTGAA+GGG | 0.560805 | 3:+90115263 | MsG0380016967.01.T01:CDS |
| TTGATTGGCAGGAGTGCAAT+GGG | 0.573048 | 3:+90115223 | MsG0380016967.01.T01:intron |
| GAACTCTGACGTAAGAGTGA+AGG | 0.573322 | 3:+90115262 | MsG0380016967.01.T01:CDS |
| CCAGAGGAAACAAAAGATGA+AGG | 0.575754 | 3:+90114083 | MsG0380016967.01.T01:CDS |
| TATAGAAGATACAAAGGTGG+AGG | 0.578614 | 3:+90115487 | MsG0380016967.01.T01:CDS |
| TGTGAAGGAAGAGAAAATTG+AGG | 0.579391 | 3:+90115349 | MsG0380016967.01.T01:CDS |
| TGCATTGTGAAGGCTGTGCT+CGG | 0.590749 | 3:+90114153 | MsG0380016967.01.T01:CDS |
| TGAAGAGAAGAAGAAAGAAG+AGG | 0.599820 | 3:+90114388 | MsG0380016967.01.T01:CDS |
| TTAAGAACAGTCACAGTCCG+AGG | 0.603779 | 3:-90114532 | None:intergenic |
| GTTATCACATCTTCAACACC+TGG | 0.604591 | 3:-90114203 | None:intergenic |
| CTCAGCAAAATCTCTGCTGG+AGG | 0.612791 | 3:-90114122 | None:intergenic |
| TCAGAAGAAGAGTCATAGGA+AGG | 0.616480 | 3:+90114295 | MsG0380016967.01.T01:CDS |
| AAACGGATACTGAAAATGAA+GGG | 0.623194 | 3:+90114595 | MsG0380016967.01.T01:CDS |
| ATTGATTGGCAGGAGTGCAA+TGG | 0.623775 | 3:+90115222 | MsG0380016967.01.T01:intron |
| GAAGGAAGAGAAAATTGAGG+AGG | 0.627555 | 3:+90115352 | MsG0380016967.01.T01:CDS |
| GATCCCAATTCCTCCTGAGG+AGG | 0.632190 | 3:+90114334 | MsG0380016967.01.T01:CDS |
| AACTATTATAGAAGATACAA+AGG | 0.635552 | 3:+90115481 | MsG0380016967.01.T01:CDS |
| GTGTTTGATAGTAAGCAGCT+GGG | 0.645270 | 3:-90115589 | None:intergenic |
| TGAGGAGGAGAAAATTGCTG+AGG | 0.652298 | 3:+90114349 | MsG0380016967.01.T01:CDS |
| GCTGTGCTCGGAAAGTTCGT+CGG | 0.656979 | 3:+90114165 | MsG0380016967.01.T01:CDS |
| AGATTGCAAATCTCATATGG+TGG | 0.675547 | 3:+90114226 | MsG0380016967.01.T01:CDS |
| TGAGGAGGAAGCCAAAGCTG+AGG | 0.685279 | 3:+90115367 | MsG0380016967.01.T01:CDS |
| TATTATAGAAGATACAAAGG+TGG | 0.685331 | 3:+90115484 | MsG0380016967.01.T01:CDS |
| ATTGGCAGGAGTGCAATGGG+TGG | 0.691929 | 3:+90115226 | MsG0380016967.01.T01:intron |
| TTAGGAAGAACAGAAAACAG+AGG | 0.708257 | 3:+90114022 | MsG0380016967.01.T01:intron |
| GAAGCATGCAGTGATTGTGA+AGG | 0.719800 | 3:+90115334 | MsG0380016967.01.T01:CDS |
| GCATTGTGAAGCTTGTGCAG+AGG | 0.739265 | 3:+90114564 | MsG0380016967.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAGAGTTAAATAT+TGG | - | Chr3:90114627-90114646 | None:intergenic | 10.0% |
| !! | GTTAAATATTAAGTGATAAA+TGG | + | Chr3:90113953-90113972 | MsG0380016967.01.T01:intron | 15.0% |
| !!! | ATTTTGTTTACAAAATGATA+TGG | + | Chr3:90114664-90114683 | MsG0380016967.01.T01:intron | 15.0% |
| !! | AACTATTATAGAAGATACAA+AGG | + | Chr3:90115481-90115500 | MsG0380016967.01.T01:CDS | 20.0% |
| !! | AGTTGATTGATATAATTGAT+TGG | + | Chr3:90115208-90115227 | MsG0380016967.01.T01:intron | 20.0% |
| !! | CTAAGTATAGTAAAAAAAGT+TGG | - | Chr3:90115014-90115033 | None:intergenic | 20.0% |
| !!! | ACTAATGTTTTACTAAAAAC+TGG | - | Chr3:90115105-90115124 | None:intergenic | 20.0% |
| !!! | TGGTTGTTTTTATTCTATTT+AGG | + | Chr3:90114004-90114023 | MsG0380016967.01.T01:intron | 20.0% |
| ! | AAAATAAAATGATATTCCGC+TGG | - | Chr3:90114870-90114889 | None:intergenic | 25.0% |
| ! | AATTAGTTAAATCATTCGCA+AGG | + | Chr3:90114979-90114998 | MsG0380016967.01.T01:intron | 25.0% |
| ! | TATAGTAAAAAAAGTTGGCA+TGG | - | Chr3:90115009-90115028 | None:intergenic | 25.0% |
| ! | TATTATAGAAGATACAAAGG+TGG | + | Chr3:90115484-90115503 | MsG0380016967.01.T01:CDS | 25.0% |
| !! | ACAAAAAAAGCATAATTCCA+CGG | - | Chr3:90114489-90114508 | None:intergenic | 25.0% |
| !!! | ATTCTCAGCATCTTTTATTT+TGG | + | Chr3:90113984-90114003 | MsG0380016967.01.T01:intron | 25.0% |
| AAAACGGATACTGAAAATGA+AGG | + | Chr3:90114594-90114613 | MsG0380016967.01.T01:CDS | 30.0% | |
| AAACGGATACTGAAAATGAA+GGG | + | Chr3:90114595-90114614 | MsG0380016967.01.T01:CDS | 30.0% | |
| AACAGATTGCAAATCTCATA+TGG | + | Chr3:90114223-90114242 | MsG0380016967.01.T01:CDS | 30.0% | |
| AATATGTGTACAAGCGAATT+GGG | + | Chr3:90115312-90115331 | MsG0380016967.01.T01:CDS | 30.0% | |
| AATGCACAATTTCTTTCACA+CGG | - | Chr3:90115037-90115056 | None:intergenic | 30.0% | |
| ATGCATGATATGCTATTGTT+GGG | - | Chr3:90115568-90115587 | None:intergenic | 30.0% | |
| GATTGATATAATTGATTGGC+AGG | + | Chr3:90115212-90115231 | MsG0380016967.01.T01:intron | 30.0% | |
| TACGCACGTAATGATTTAAT+TGG | - | Chr3:90115073-90115092 | None:intergenic | 30.0% | |
| TATGCATACATATTCATTGG+TGG | - | Chr3:90115545-90115564 | None:intergenic | 30.0% | |
| TATGCATGATATGCTATTGT+TGG | - | Chr3:90115569-90115588 | None:intergenic | 30.0% | |
| ! | CTAACATAACATTGTCACTT+TGG | - | Chr3:90115134-90115153 | None:intergenic | 30.0% |
| ! | TTGGTTTCTTCTTCCTTTTT+CGG | - | Chr3:90114050-90114069 | None:intergenic | 30.0% |
| ! | TTTTTATCACTGAAGATCTG+AGG | - | Chr3:90115629-90115648 | None:intergenic | 30.0% |
| AAAGGAGAAAACTGAAGAAG+TGG | + | Chr3:90115400-90115419 | MsG0380016967.01.T01:CDS | 35.0% | |
| ACCAATTACATTATTGCCAG+CGG | + | Chr3:90114851-90114870 | MsG0380016967.01.T01:intron | 35.0% | |
| AGATTGCAAATCTCATATGG+TGG | + | Chr3:90114226-90114245 | MsG0380016967.01.T01:CDS | 35.0% | |
| CTAAGTAGCCAAAACAGTTA+CGG | + | Chr3:90113854-90113873 | MsG0380016967.01.T01:intron | 35.0% | |
| GAATATGTGTACAAGCGAAT+TGG | + | Chr3:90115311-90115330 | MsG0380016967.01.T01:CDS | 35.0% | |
| GGGTATGCATACATATTCAT+TGG | - | Chr3:90115548-90115567 | None:intergenic | 35.0% | |
| GTCAAATGCAAGAAATTACG+TGG | + | Chr3:90114815-90114834 | MsG0380016967.01.T01:intron | 35.0% | |
| TATAGAAGATACAAAGGTGG+AGG | + | Chr3:90115487-90115506 | MsG0380016967.01.T01:CDS | 35.0% | |
| TATTCCACGCTATGTTAGTT+TGG | - | Chr3:90114732-90114751 | None:intergenic | 35.0% | |
| TCTTCTTTCTTCTTCTCTTC+AGG | - | Chr3:90114389-90114408 | None:intergenic | 35.0% | |
| TGAAGAGAAGAAGAAAGAAG+AGG | + | Chr3:90114388-90114407 | MsG0380016967.01.T01:CDS | 35.0% | |
| TGTGAAGGAAGAGAAAATTG+AGG | + | Chr3:90115349-90115368 | MsG0380016967.01.T01:CDS | 35.0% | |
| TTAGGAAGAACAGAAAACAG+AGG | + | Chr3:90114022-90114041 | MsG0380016967.01.T01:intron | 35.0% | |
| ! | AGAGTTTTCATGCATTGTGA+AGG | + | Chr3:90114143-90114162 | MsG0380016967.01.T01:CDS | 35.0% |
| AACTCTGACGTAAGAGTGAA+GGG | + | Chr3:90115263-90115282 | MsG0380016967.01.T01:CDS | 40.0% | |
| ACATATTCAACCAGCATTGC+TGG | - | Chr3:90115299-90115318 | None:intergenic | 40.0% | |
| ACATGACACTGCAAGCATTT+GGG | - | Chr3:90115652-90115671 | None:intergenic | 40.0% | |
| ACTCTCTCCAAAACCTTCAA+TGG | - | Chr3:90114275-90114294 | None:intergenic | 40.0% | |
| AGAGAAGAAAGAAGAAGGAG+AGG | + | Chr3:90115424-90115443 | MsG0380016967.01.T01:CDS | 40.0% | |
| AGCTGAGGAAGTGAAGAAAA+AGG | + | Chr3:90115382-90115401 | MsG0380016967.01.T01:CDS | 40.0% | |
| ATGATATTCCGCGTATGACA+GGG | - | Chr3:90114773-90114792 | None:intergenic | 40.0% | |
| CATAGCGTGGAATATCATGT+CGG | + | Chr3:90114738-90114757 | MsG0380016967.01.T01:intron | 40.0% | |
| CCAGAGGAAACAAAAGATGA+AGG | + | Chr3:90114083-90114102 | MsG0380016967.01.T01:CDS | 40.0% | |
| GAAAACAGAGGAACCGAAAA+AGG | + | Chr3:90114034-90114053 | MsG0380016967.01.T01:CDS | 40.0% | |
| GAAAATTGCTGAGGAAGAGA+AGG | + | Chr3:90114358-90114377 | MsG0380016967.01.T01:CDS | 40.0% | |
| GAAGGAAGAGAAAATTGAGG+AGG | + | Chr3:90115352-90115371 | MsG0380016967.01.T01:CDS | 40.0% | |
| GAGAAGAAAGAAGAAGGAGA+GGG | + | Chr3:90115425-90115444 | MsG0380016967.01.T01:CDS | 40.0% | |
| GAGTTCAGAAGAAGAGTCAT+AGG | + | Chr3:90114291-90114310 | MsG0380016967.01.T01:CDS | 40.0% | |
| GATTTGATCCATTGAATCCG+TGG | + | Chr3:90114469-90114488 | MsG0380016967.01.T01:intron | 40.0% | |
| GCATAATTCCACGGATTCAA+TGG | - | Chr3:90114480-90114499 | None:intergenic | 40.0% | |
| GTGCAGAGGAGATCAAAAAA+CGG | + | Chr3:90114578-90114597 | MsG0380016967.01.T01:CDS | 40.0% | |
| GTTATCACATCTTCAACACC+TGG | - | Chr3:90114206-90114225 | None:intergenic | 40.0% | |
| TCAGAAGAAGAGTCATAGGA+AGG | + | Chr3:90114295-90114314 | MsG0380016967.01.T01:CDS | 40.0% | |
| TCATACGCGGAATATCATGT+TGG | + | Chr3:90114775-90114794 | MsG0380016967.01.T01:intron | 40.0% | |
| TCCGCTGGCAATAATGTAAT+TGG | - | Chr3:90114855-90114874 | None:intergenic | 40.0% | |
| TCTCATATGGTGGTTGTGAA+AGG | + | Chr3:90114236-90114255 | MsG0380016967.01.T01:CDS | 40.0% | |
| TTTCTTCACTTCCTCAGCTT+TGG | - | Chr3:90115381-90115400 | None:intergenic | 40.0% | |
| ! | CGGTCATTGAAAGATTTTCC+AGG | + | Chr3:90114185-90114204 | MsG0380016967.01.T01:CDS | 40.0% |
| ! | GTCTCTTTCTCCTTTTCTTG+TGG | - | Chr3:90115461-90115480 | None:intergenic | 40.0% |
| ! | GTGTTTGATAGTAAGCAGCT+GGG | - | Chr3:90115592-90115611 | None:intergenic | 40.0% |
| ! | TGTGTTTGATAGTAAGCAGC+TGG | - | Chr3:90115593-90115612 | None:intergenic | 40.0% |
| ! | TTTCTCCTTTTCTTGTGGCT+TGG | - | Chr3:90115456-90115475 | None:intergenic | 40.0% |
| !! | CCTTCATCTTTTGTTTCCTC+TGG | - | Chr3:90114086-90114105 | None:intergenic | 40.0% |
| !!! | GTTTCCTCTGGTTTTTTCTC+AGG | - | Chr3:90114074-90114093 | None:intergenic | 40.0% |
| !!! | TTTTTTCCCATTTGCAGCCT+CGG | + | Chr3:90114515-90114534 | MsG0380016967.01.T01:intron | 40.0% |
| ACTCTCAGCAAAATCTCTGC+TGG | - | Chr3:90114128-90114147 | None:intergenic | 45.0% | |
| AGAGAAAGCAGAGCCATTGA+AGG | + | Chr3:90114259-90114278 | MsG0380016967.01.T01:CDS | 45.0% | |
| AGCCAAAACAGTTACGGTAC+TGG | + | Chr3:90113860-90113879 | MsG0380016967.01.T01:intron | 45.0% | |
| AGTGTATGATCCAGCAATGC+TGG | + | Chr3:90115286-90115305 | MsG0380016967.01.T01:CDS | 45.0% | |
| CAAGCCTGAGAAAAAACCAG+AGG | + | Chr3:90114067-90114086 | MsG0380016967.01.T01:CDS | 45.0% | |
| CACATGACACTGCAAGCATT+TGG | - | Chr3:90115653-90115672 | None:intergenic | 45.0% | |
| CAGACCAAACTAACATAGCG+TGG | + | Chr3:90114725-90114744 | MsG0380016967.01.T01:intron | 45.0% | |
| CATGATATTCCGCGTATGAC+AGG | - | Chr3:90114774-90114793 | None:intergenic | 45.0% | |
| GAACTCTGACGTAAGAGTGA+AGG | + | Chr3:90115262-90115281 | MsG0380016967.01.T01:CDS | 45.0% | |
| GAAGCATGCAGTGATTGTGA+AGG | + | Chr3:90115334-90115353 | MsG0380016967.01.T01:CDS | 45.0% | |
| GTGGCAGAGAAGAAAGAAGA+AGG | + | Chr3:90115419-90115438 | MsG0380016967.01.T01:CDS | 45.0% | |
| TGAGGAGGAGAAAATTGCTG+AGG | + | Chr3:90114349-90114368 | MsG0380016967.01.T01:CDS | 45.0% | |
| TTAAGAACAGTCACAGTCCG+AGG | - | Chr3:90114535-90114554 | None:intergenic | 45.0% | |
| ! | AGCAGAGCCATTGAAGGTTT+TGG | + | Chr3:90114265-90114284 | MsG0380016967.01.T01:CDS | 45.0% |
| ! | AGCCAGTACCGTAACTGTTT+TGG | - | Chr3:90113865-90113884 | None:intergenic | 45.0% |
| ! | ATTGATTGGCAGGAGTGCAA+TGG | + | Chr3:90115222-90115241 | MsG0380016967.01.T01:intron | 45.0% |
| ! | TCAGCAATTTTCTCCTCCTC+AGG | - | Chr3:90114350-90114369 | None:intergenic | 45.0% |
| ! | TTGATTGGCAGGAGTGCAAT+GGG | + | Chr3:90115223-90115242 | MsG0380016967.01.T01:intron | 45.0% |
| !!! | CTCTGGTTTTTTCTCAGGCT+TGG | - | Chr3:90114069-90114088 | None:intergenic | 45.0% |
| AAAATCTCTGCTGGAGGAGG+TGG | - | Chr3:90114119-90114138 | None:intergenic | 50.0% | |
| AGCAAAATCTCTGCTGGAGG+AGG | - | Chr3:90114122-90114141 | None:intergenic | 50.0% | |
| CTCAGCAAAATCTCTGCTGG+AGG | - | Chr3:90114125-90114144 | None:intergenic | 50.0% | |
| GAAAGAAGAAGGAGAGGGTG+AGG | + | Chr3:90115430-90115449 | MsG0380016967.01.T01:CDS | 50.0% | |
| GCATTGTGAAGCTTGTGCAG+AGG | + | Chr3:90114564-90114583 | MsG0380016967.01.T01:CDS | 50.0% | |
| GTGGAATATCATGTCGGTGC+TGG | + | Chr3:90114744-90114763 | MsG0380016967.01.T01:intron | 50.0% | |
| TCCTCAGGAGGAATTGGGAT+CGG | - | Chr3:90114335-90114354 | None:intergenic | 50.0% | |
| TCTCCTCCTCAGGAGGAATT+GGG | - | Chr3:90114340-90114359 | None:intergenic | 50.0% | |
| TGAGGCCAAGCCACAAGAAA+AGG | + | Chr3:90115448-90115467 | MsG0380016967.01.T01:CDS | 50.0% | |
| TGCATTGTGAAGGCTGTGCT+CGG | + | Chr3:90114153-90114172 | MsG0380016967.01.T01:CDS | 50.0% | |
| TTCTCCTCCTCAGGAGGAAT+TGG | - | Chr3:90114341-90114360 | None:intergenic | 50.0% | |
| ! | GCAATTTTCTCCTCCTCAGG+AGG | - | Chr3:90114347-90114366 | None:intergenic | 50.0% |
| ! | TCACTGAAGATCTGAGGTGC+TGG | - | Chr3:90115623-90115642 | None:intergenic | 50.0% |
| CACAGTCCGAGGCTGCAAAT+GGG | - | Chr3:90114524-90114543 | None:intergenic | 55.0% | |
| GATCCCAATTCCTCCTGAGG+AGG | + | Chr3:90114334-90114353 | MsG0380016967.01.T01:CDS | 55.0% | |
| GCTGGTAACCCTGTCATACG+CGG | + | Chr3:90114762-90114781 | MsG0380016967.01.T01:intron | 55.0% | |
| GCTGTGCTCGGAAAGTTCGT+CGG | + | Chr3:90114165-90114184 | MsG0380016967.01.T01:CDS | 55.0% | |
| TCACAGTCCGAGGCTGCAAA+TGG | - | Chr3:90114525-90114544 | None:intergenic | 55.0% | |
| TCCGATCCCAATTCCTCCTG+AGG | + | Chr3:90114331-90114350 | MsG0380016967.01.T01:CDS | 55.0% | |
| TGAGGAGGAAGCCAAAGCTG+AGG | + | Chr3:90115367-90115386 | MsG0380016967.01.T01:CDS | 55.0% | |
| ! | ATTGGCAGGAGTGCAATGGG+TGG | + | Chr3:90115226-90115245 | MsG0380016967.01.T01:intron | 55.0% |
| !! | CTGAAGATCTGAGGTGCTGG+TGG | - | Chr3:90115620-90115639 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 90113842 | 90115673 | 90113842 | ID=MsG0380016967.01;Name=MsG0380016967.01 |
| Chr3 | mRNA | 90113842 | 90115673 | 90113842 | ID=MsG0380016967.01.T01;Parent=MsG0380016967.01;Name=MsG0380016967.01.T01;_AED=0.45;_eAED=0.46;_QI=0|0.66|0.5|1|1|1|4|0|303 |
| Chr3 | exon | 90113842 | 90113844 | 90113842 | ID=MsG0380016967.01.T01:exon:25236;Parent=MsG0380016967.01.T01 |
| Chr3 | exon | 90114026 | 90114409 | 90114026 | ID=MsG0380016967.01.T01:exon:25237;Parent=MsG0380016967.01.T01 |
| Chr3 | exon | 90114532 | 90114616 | 90114532 | ID=MsG0380016967.01.T01:exon:25238;Parent=MsG0380016967.01.T01 |
| Chr3 | exon | 90115234 | 90115673 | 90115234 | ID=MsG0380016967.01.T01:exon:25239;Parent=MsG0380016967.01.T01 |
| Chr3 | CDS | 90113842 | 90113844 | 90113842 | ID=MsG0380016967.01.T01:cds;Parent=MsG0380016967.01.T01 |
| Chr3 | CDS | 90114026 | 90114409 | 90114026 | ID=MsG0380016967.01.T01:cds;Parent=MsG0380016967.01.T01 |
| Chr3 | CDS | 90114532 | 90114616 | 90114532 | ID=MsG0380016967.01.T01:cds;Parent=MsG0380016967.01.T01 |
| Chr3 | CDS | 90115234 | 90115673 | 90115234 | ID=MsG0380016967.01.T01:cds;Parent=MsG0380016967.01.T01 |
| Gene Sequence |
| Protein sequence |
