AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010349.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010349.01.T01 MTR_2g082180 43.011 186 39 4 1 124 1 181 1.03e-35 122
MsG0280010349.01.T01 MTR_0769s0020 51.163 86 35 3 43 124 1 83 6.05e-17 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 39 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAAACACACCATTTATT+TGG 0.108653 2:-68411153 MsG0280010350.01.T01:three_prime_UTR
GTGTGGTCATTGGTGGAAAA+TGG 0.282902 2:+68412856 MsG0280010349.01.T01:CDS
ATTCAAGTCCATGTTGATAA+AGG 0.284747 2:+68412770 MsG0280010349.01.T01:CDS
ATGATCAAACTCCAAATAAA+TGG 0.295652 2:+68411142 MsG0280010349.01.T01:CDS
AATAAATGGTGTGTTTCATT+AGG 0.320504 2:+68411156 MsG0280010349.01.T01:CDS
TTAAATGCCAAAGATCAAAA+AGG 0.326003 2:+68412961 MsG0280010349.01.T01:CDS
TTAGTATCAATTTGCATAGA+TGG 0.347269 2:-68413065 MsG0280010350.01.T01:intron
CTGCACGGCATACCTTTATA+AGG 0.380906 2:-68413393 MsG0280010350.01.T01:three_prime_UTR
GTCATAAATATACCTTATAA+AGG 0.391212 2:+68413381 MsG0280010349.01.T01:three_prime_UTR
GTGGAAAATGGATATGTAGA+AGG 0.426542 2:+68412868 MsG0280010349.01.T01:CDS
TTCAAGTCCATGTTGATAAA+GGG 0.436330 2:+68412771 MsG0280010349.01.T01:CDS
GAGACTCGAAGACAAATGAT+TGG 0.456799 2:+68412831 MsG0280010349.01.T01:CDS
TTCTTCCAATCTGCATCCTC+TGG 0.460108 2:-68412900 MsG0280010350.01.T01:intron
AGTGAGAAGAGAGATGGATT+CGG 0.493674 2:+68413310 MsG0280010349.01.T01:three_prime_UTR
AGATGCCAGAGGATGCAGAT+TGG 0.502624 2:+68412895 MsG0280010349.01.T01:CDS
GATGGATTCGGATTACCTGC+TGG 0.528555 2:+68413322 MsG0280010349.01.T01:three_prime_UTR
AATGGCTGGTTCTAACAAGA+AGG 0.530014 2:+68411104 None:intergenic
ATTGGAGGTGTGGTCATTGG+TGG 0.531004 2:+68412849 MsG0280010349.01.T01:CDS
ATGATTGGAGGTGTGGTCAT+TGG 0.535519 2:+68412846 MsG0280010349.01.T01:CDS
CCACCTTCCCTTTATCAACA+TGG 0.538491 2:-68412778 MsG0280010350.01.T01:intron
TCATCATCAAAGACAATCAA+AGG 0.568691 2:+68413266 MsG0280010349.01.T01:three_prime_UTR
ACTTGTAGTGAGAAGAGAGA+TGG 0.570378 2:+68413304 MsG0280010349.01.T01:three_prime_UTR
AAGGGTTCTGATCATGCTCA+AGG 0.575715 2:+68412980 MsG0280010349.01.T01:CDS
ATGTATATAAAGACGCAAGA+AGG 0.580176 2:+68413153 MsG0280010349.01.T01:three_prime_UTR
TGGTTCTAACAAGAAGGTTG+AGG 0.580733 2:+68411110 MsG0280010349.01.T01:CDS
AGAAGATTAATAGACGGAAG+TGG 0.582605 2:-68413498 MsG0280010350.01.T01:CDS
TCGTAGATGCACATGCTGCA+CGG 0.590596 2:-68413408 MsG0280010350.01.T01:three_prime_UTR
TTGATGAGAAGATTAATAGA+CGG 0.596240 2:-68413504 MsG0280010350.01.T01:CDS
GACTAATCCAACAGTTCACA+AGG 0.599483 2:+68411209 MsG0280010349.01.T01:CDS
AAGACAAATGATTGGAGGTG+TGG 0.600642 2:+68412839 MsG0280010349.01.T01:CDS
ACTCGAAGACAAATGATTGG+AGG 0.612468 2:+68412834 MsG0280010349.01.T01:CDS
GGGAAGGTGGTGGAAATCAG+TGG 0.621675 2:+68412791 MsG0280010349.01.T01:CDS
TGTTGATAAAGGGAAGGTGG+TGG 0.624580 2:+68412781 MsG0280010349.01.T01:CDS
CCATGTTGATAAAGGGAAGG+TGG 0.624798 2:+68412778 MsG0280010349.01.T01:CDS
TGGTGGAAATCAGTGGACAA+TGG 0.653289 2:+68412798 MsG0280010349.01.T01:CDS
AGTCCATGTTGATAAAGGGA+AGG 0.656983 2:+68412775 MsG0280010349.01.T01:CDS
TCTTTATATACATCATCACA+AGG 0.679156 2:-68413143 MsG0280010350.01.T01:intron
TCATGCTCAAGGATAAGATG+TGG 0.683918 2:+68412991 MsG0280010349.01.T01:CDS
TAGAAGGCTTGAGATGCCAG+AGG 0.711192 2:+68412884 MsG0280010349.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAATTAAAGTTTTTTTTA+GGG + Chr2:68411484-68411503 MsG0280010349.01.T01:intron 10.0%
!!! TTAATTTCTCTTATTTTATT+AGG - Chr2:68411473-68411492 MsG0280010350.01.T01:intron 10.0%
!! AGTAAAATATATCTCAAAAT+TGG + Chr2:68411734-68411753 MsG0280010349.01.T01:intron 15.0%
!! TGTTATTATTACATATAAAC+AGG + Chr2:68411831-68411850 MsG0280010349.01.T01:intron 15.0%
!!! AAAGAACTCTATTTTAAAAA+AGG - Chr2:68413225-68413244 MsG0280010350.01.T01:intron 15.0%
!!! CTTTGTTTTGATAATAAATT+TGG + Chr2:68411992-68412011 MsG0280010349.01.T01:intron 15.0%
!!! GAGAAATTAAAGTTTTTTTT+AGG + Chr2:68411483-68411502 MsG0280010349.01.T01:intron 15.0%
!! AAAATATATCTCAAAATTGG+AGG + Chr2:68411737-68411756 MsG0280010349.01.T01:intron 20.0%
!! AAATTGACAATGTAAAGTTA+AGG - Chr2:68411619-68411638 MsG0280010350.01.T01:intron 20.0%
!! AATATTTATACTATTCCATG+TGG - Chr2:68412144-68412163 MsG0280010350.01.T01:intron 20.0%
!! AATTGACAATGTAAAGTTAA+GGG - Chr2:68411618-68411637 MsG0280010350.01.T01:intron 20.0%
!! AGAATTCTAAGCAAAATTAT+AGG - Chr2:68412652-68412671 MsG0280010350.01.T01:intron 20.0%
!! AGATTGTCCTTATATATTAA+AGG + Chr2:68412528-68412547 MsG0280010349.01.T01:intron 20.0%
!! ATATTTATACTATTCCATGT+GGG - Chr2:68412143-68412162 MsG0280010350.01.T01:intron 20.0%
!! GAACTATTTATTAAATTTGC+AGG + Chr2:68411759-68411778 MsG0280010349.01.T01:intron 20.0%
!! GAATTCTAAGCAAAATTATA+GGG - Chr2:68412651-68412670 MsG0280010350.01.T01:intron 20.0%
!! GATTGTCCTTATATATTAAA+GGG + Chr2:68412529-68412548 MsG0280010349.01.T01:intron 20.0%
!! GTCATAAATATACCTTATAA+AGG + Chr2:68413381-68413400 MsG0280010349.01.T01:three_prime_UTR 20.0%
!! TTTAAAAACTAGCTATTAAG+GGG - Chr2:68412190-68412209 MsG0280010350.01.T01:intron 20.0%
!!! AAATTCAAATTCTAGGTTTT+AGG - Chr2:68412084-68412103 MsG0280010350.01.T01:intron 20.0%
!!! CATTCACATTTTATATGATA+CGG - Chr2:68412468-68412487 MsG0280010350.01.T01:intron 20.0%
!!! CTTTAAAAACTAGCTATTAA+GGG - Chr2:68412191-68412210 MsG0280010350.01.T01:intron 20.0%
!!! TTCAAATAAGAGATTTTATG+AGG + Chr2:68412021-68412040 MsG0280010349.01.T01:intron 20.0%
!!! TTTACTTACTTTTTTTTTCC+AGG - Chr2:68411720-68411739 MsG0280010350.01.T01:intron 20.0%
! AATAAATGGTGTGTTTCATT+AGG + Chr2:68411156-68411175 MsG0280010349.01.T01:CDS 25.0%
! AATGAAACACACCATTTATT+TGG - Chr2:68411156-68411175 MsG0280010350.01.T01:three_prime_UTR 25.0%
! AATTTGAATTTCCTTACCAT+GGG + Chr2:68412093-68412112 MsG0280010349.01.T01:intron 25.0%
! ATGATCAAACTCCAAATAAA+TGG + Chr2:68411142-68411161 MsG0280010349.01.T01:CDS 25.0%
! ATTGACAATGTAAAGTTAAG+GGG - Chr2:68411617-68411636 MsG0280010350.01.T01:intron 25.0%
! GAAAGATTCACTATATAACA+AGG - Chr2:68411859-68411878 MsG0280010350.01.T01:intron 25.0%
! GGAATAGTATAAATATTTGC+TGG + Chr2:68412147-68412166 MsG0280010349.01.T01:intron 25.0%
! TAAATGCCAAAGATCAAAAA+GGG + Chr2:68412962-68412981 MsG0280010349.01.T01:CDS 25.0%
! TCTTTATATACATCATCACA+AGG - Chr2:68413146-68413165 MsG0280010350.01.T01:intron 25.0%
! TTAAAAACTAGCTATTAAGG+GGG - Chr2:68412189-68412208 MsG0280010350.01.T01:intron 25.0%
! TTAAATGCCAAAGATCAAAA+AGG + Chr2:68412961-68412980 MsG0280010349.01.T01:CDS 25.0%
! TTAGTATCAATTTGCATAGA+TGG - Chr2:68413068-68413087 MsG0280010350.01.T01:intron 25.0%
! TTGATGAGAAGATTAATAGA+CGG - Chr2:68413507-68413526 MsG0280010350.01.T01:CDS 25.0%
! TTTAACATCATACAGATGAA+TGG - Chr2:68411531-68411550 MsG0280010350.01.T01:intron 25.0%
!! CCTTTAAAAACTAGCTATTA+AGG - Chr2:68412192-68412211 MsG0280010350.01.T01:intron 25.0%
!! GCACAAATTATTTGAAACAA+GGG + Chr2:68411781-68411800 MsG0280010349.01.T01:intron 25.0%
!! TTGGATAAGGAAATTTTATG+AGG + Chr2:68411923-68411942 MsG0280010349.01.T01:intron 25.0%
!!! ATGTGTGCAAGTTTTAAATA+TGG - Chr2:68412590-68412609 MsG0280010350.01.T01:intron 25.0%
!!! CCTTAATAGCTAGTTTTTAA+AGG + Chr2:68412189-68412208 MsG0280010349.01.T01:intron 25.0%
!!! GCAAGTTTTAAATATGGAAA+GGG - Chr2:68412584-68412603 MsG0280010350.01.T01:intron 25.0%
!!! TATTTTTCAAAACAGGAACT+GGG + Chr2:68412739-68412758 MsG0280010349.01.T01:CDS 25.0%
!!! TGCAAGTTTTAAATATGGAA+AGG - Chr2:68412585-68412604 MsG0280010350.01.T01:intron 25.0%
!!! TTATTTTTCAAAACAGGAAC+TGG + Chr2:68412738-68412757 MsG0280010349.01.T01:CDS 25.0%
!!! TTCCTGTTTTGAAAAATAAC+TGG - Chr2:68412737-68412756 MsG0280010350.01.T01:intron 25.0%
!!! TTTTTAGTCCAATGTTGTTT+GGG + Chr2:68411250-68411269 MsG0280010349.01.T01:intron 25.0%
AAATCCATACTACTTGATGT+GGG - Chr2:68412363-68412382 MsG0280010350.01.T01:intron 30.0%
AAGAATTTCCCAAACAACAT+TGG - Chr2:68411261-68411280 MsG0280010350.01.T01:three_prime_UTR 30.0%
ATGAGGCAAATGAAAATACT+AGG - Chr2:68412681-68412700 MsG0280010350.01.T01:intron 30.0%
ATGAGGTAATGTAATTTCAG+AGG + Chr2:68411940-68411959 MsG0280010349.01.T01:intron 30.0%
ATGTATATAAAGACGCAAGA+AGG + Chr2:68413153-68413172 MsG0280010349.01.T01:three_prime_UTR 30.0%
ATGTTAAAAGCTGAAATACC+AGG + Chr2:68411392-68411411 MsG0280010349.01.T01:intron 30.0%
CAAAATTTAGCTAGTGTGTT+TGG + Chr2:68411904-68411923 MsG0280010349.01.T01:intron 30.0%
GAATTTGAATTTCCTTACCA+TGG + Chr2:68412092-68412111 MsG0280010349.01.T01:intron 30.0%
GCATGACCCTTTAATATATA+AGG - Chr2:68412538-68412557 MsG0280010350.01.T01:intron 30.0%
GGTAAGGAAATTCAAATTCT+AGG - Chr2:68412091-68412110 MsG0280010350.01.T01:intron 30.0%
TCATCATCAAAGACAATCAA+AGG + Chr2:68413266-68413285 MsG0280010349.01.T01:three_prime_UTR 30.0%
TGATAAGTATCCAAGAACTT+GGG - Chr2:68412441-68412460 MsG0280010350.01.T01:intron 30.0%
TGCATTGTAATATTTGTACC+TGG - Chr2:68411413-68411432 MsG0280010350.01.T01:intron 30.0%
! ATTCAAGTCCATGTTGATAA+AGG + Chr2:68412770-68412789 MsG0280010349.01.T01:CDS 30.0%
! CACATTTTATATGATACGGA+AGG - Chr2:68412464-68412483 MsG0280010350.01.T01:intron 30.0%
! GGCACAAATTATTTGAAACA+AGG + Chr2:68411780-68411799 MsG0280010349.01.T01:intron 30.0%
! TTCAAGTCCATGTTGATAAA+GGG + Chr2:68412771-68412790 MsG0280010349.01.T01:CDS 30.0%
!! CTTTTTAGTCCAATGTTGTT+TGG + Chr2:68411249-68411268 MsG0280010349.01.T01:intron 30.0%
!! GCATCATCATTTTTAAATCC+TGG + Chr2:68411699-68411718 MsG0280010349.01.T01:intron 30.0%
!!! CACCAGTTATTTTTCAAAAC+AGG + Chr2:68412732-68412751 MsG0280010349.01.T01:intron 30.0%
AAAAAAGGCAATTGCGCATT+AGG - Chr2:68413210-68413229 MsG0280010350.01.T01:intron 35.0%
AATTTCCTTACCATGGGATT+TGG + Chr2:68412099-68412118 MsG0280010349.01.T01:intron 35.0%
AGAAGATTAATAGACGGAAG+TGG - Chr2:68413501-68413520 MsG0280010350.01.T01:CDS 35.0%
ATACTATTCCATGTGGGATT+TGG - Chr2:68412137-68412156 MsG0280010350.01.T01:intron 35.0%
ATAGGGACTTCAGTATTATG+GGG + Chr2:68412328-68412347 MsG0280010349.01.T01:intron 35.0%
CCTTAGAAGCTAGTTATCAA+CGG - Chr2:68412410-68412429 MsG0280010350.01.T01:intron 35.0%
CTTAGAAGCTAGTTATCAAC+GGG - Chr2:68412409-68412428 MsG0280010350.01.T01:intron 35.0%
GAAATCCATACTACTTGATG+TGG - Chr2:68412364-68412383 MsG0280010350.01.T01:intron 35.0%
GATAAGTATCCAAGAACTTG+GGG - Chr2:68412440-68412459 MsG0280010350.01.T01:intron 35.0%
GATAGGGACTTCAGTATTAT+GGG + Chr2:68412327-68412346 MsG0280010349.01.T01:intron 35.0%
GTGATAAGTATCCAAGAACT+TGG - Chr2:68412442-68412461 MsG0280010350.01.T01:intron 35.0%
GTGGAAAATGGATATGTAGA+AGG + Chr2:68412868-68412887 MsG0280010349.01.T01:CDS 35.0%
GTTAATCATCACACAGATGA+AGG + Chr2:68411552-68411571 MsG0280010349.01.T01:intron 35.0%
TTAGAAGCTAGTTATCAACG+GGG - Chr2:68412408-68412427 MsG0280010350.01.T01:intron 35.0%
TTAGCTAGTGTGTTTGGATA+AGG + Chr2:68411910-68411929 MsG0280010349.01.T01:intron 35.0%
! AATATTTGCTGGAAGTAGCT+TGG + Chr2:68412158-68412177 MsG0280010349.01.T01:intron 35.0%
! ATTTCCACTAAGAGTGTGTT+TGG - Chr2:68412704-68412723 MsG0280010350.01.T01:intron 35.0%
! TCAGAACCCTTTTTGATCTT+TGG - Chr2:68412971-68412990 MsG0280010350.01.T01:intron 35.0%
!! ATACTTACGGTGCTATACTT+GGG - Chr2:68412271-68412290 MsG0280010350.01.T01:intron 35.0%
!! CGTTGATAACTAGCTTCTAA+GGG + Chr2:68412408-68412427 MsG0280010349.01.T01:intron 35.0%
AAGACAAATGATTGGAGGTG+TGG + Chr2:68412839-68412858 MsG0280010349.01.T01:CDS 40.0%
AAGTCCCACATCAAGTAGTA+TGG + Chr2:68412356-68412375 MsG0280010349.01.T01:intron 40.0%
ACTCGAAGACAAATGATTGG+AGG + Chr2:68412834-68412853 MsG0280010349.01.T01:CDS 40.0%
ACTTGTAGTGAGAAGAGAGA+TGG + Chr2:68413304-68413323 MsG0280010349.01.T01:three_prime_UTR 40.0%
CCAAAAACCTTGTGAACTGT+TGG - Chr2:68411219-68411238 MsG0280010350.01.T01:three_prime_UTR 40.0%
CTTCTGATGCTTTCCTCTAT+GGG + Chr2:68411286-68411305 MsG0280010349.01.T01:intron 40.0%
GACTAATCCAACAGTTCACA+AGG + Chr2:68411209-68411228 MsG0280010349.01.T01:CDS 40.0%
GAGACTCGAAGACAAATGAT+TGG + Chr2:68412831-68412850 MsG0280010349.01.T01:CDS 40.0%
GGATAGGGACTTCAGTATTA+TGG + Chr2:68412326-68412345 MsG0280010349.01.T01:intron 40.0%
GGATTTCGTTGAAAGTAGCT+TGG + Chr2:68412377-68412396 MsG0280010349.01.T01:intron 40.0%
TACTACCAAATCCCATGGTA+AGG - Chr2:68412107-68412126 MsG0280010350.01.T01:intron 40.0%
TCAAAATGGCATCCTACGAA+GGG + Chr2:68412233-68412252 MsG0280010349.01.T01:intron 40.0%
TCATCCAAACACACTCTTAG+TGG + Chr2:68412697-68412716 MsG0280010349.01.T01:intron 40.0%
TCATGCTCAAGGATAAGATG+TGG + Chr2:68412991-68413010 MsG0280010349.01.T01:CDS 40.0%
! ACCATGGGATTTGGTAGTAT+GGG + Chr2:68412108-68412127 MsG0280010349.01.T01:intron 40.0%
! ACTAAGAGTGTGTTTGGATG+AGG - Chr2:68412698-68412717 MsG0280010350.01.T01:intron 40.0%
! AGTCCATGTTGATAAAGGGA+AGG + Chr2:68412775-68412794 MsG0280010349.01.T01:CDS 40.0%
! AGTGAGAAGAGAGATGGATT+CGG + Chr2:68413310-68413329 MsG0280010349.01.T01:three_prime_UTR 40.0%
! CCAACAGTTCACAAGGTTTT+TGG + Chr2:68411216-68411235 MsG0280010349.01.T01:intron 40.0%
! GATAACTAGCTTCTAAGGGA+GGG + Chr2:68412412-68412431 MsG0280010349.01.T01:intron 40.0%
! TACCATGGGATTTGGTAGTA+TGG + Chr2:68412107-68412126 MsG0280010349.01.T01:intron 40.0%
! TAGAACCATAGAAGTGCATG+AGG + Chr2:68411881-68411900 MsG0280010349.01.T01:intron 40.0%
! TGATAACTAGCTTCTAAGGG+AGG + Chr2:68412411-68412430 MsG0280010349.01.T01:intron 40.0%
! TTTTGCCTCATGCACTTCTA+TGG - Chr2:68411889-68411908 MsG0280010350.01.T01:intron 40.0%
!! CATTTTGAGTCATCGACATG+GGG - Chr2:68412221-68412240 MsG0280010350.01.T01:intron 40.0%
!! CCATTTTGAGTCATCGACAT+GGG - Chr2:68412222-68412241 MsG0280010350.01.T01:intron 40.0%
!! CCGTTGATAACTAGCTTCTA+AGG + Chr2:68412407-68412426 MsG0280010349.01.T01:intron 40.0%
!! GATACTTACGGTGCTATACT+TGG - Chr2:68412272-68412291 MsG0280010350.01.T01:intron 40.0%
!! TATGGAAAGGGCACTTGTTA+AGG - Chr2:68412572-68412591 MsG0280010350.01.T01:intron 40.0%
!! TGGTTCTAACAAGAAGGTTG+AGG + Chr2:68411110-68411129 MsG0280010349.01.T01:CDS 40.0%
!!! AACACATGCTTTTTTCCAGC+AGG - Chr2:68413340-68413359 MsG0280010350.01.T01:three_prime_UTR 40.0%
!!! GTTCACAAGGTTTTTGGTGA+TGG + Chr2:68411222-68411241 MsG0280010349.01.T01:intron 40.0%
CCACCTTCCCTTTATCAACA+TGG - Chr2:68412781-68412800 MsG0280010350.01.T01:intron 45.0%
CCCATGTCGATGACTCAAAA+TGG + Chr2:68412219-68412238 MsG0280010349.01.T01:intron 45.0%
CCTTCTGATGCTTTCCTCTA+TGG + Chr2:68411285-68411304 MsG0280010349.01.T01:intron 45.0%
CTCAAAATGGCATCCTACGA+AGG + Chr2:68412232-68412251 MsG0280010349.01.T01:intron 45.0%
CTGCACGGCATACCTTTATA+AGG - Chr2:68413396-68413415 MsG0280010350.01.T01:three_prime_UTR 45.0%
GATTGGCATCACACAGATGA+GGG + Chr2:68411365-68411384 MsG0280010349.01.T01:intron 45.0%
GTGTGGTCATTGGTGGAAAA+TGG + Chr2:68412856-68412875 MsG0280010349.01.T01:CDS 45.0%
TCCAACCAAACCACTGTGAT+TGG + Chr2:68411348-68411367 MsG0280010349.01.T01:intron 45.0%
TCTGACTCAAACTCCCATAG+AGG - Chr2:68411302-68411321 MsG0280010350.01.T01:three_prime_UTR 45.0%
TCTGAGAAGCAAAATCCCGA+CGG - Chr2:68412297-68412316 MsG0280010350.01.T01:intron 45.0%
TGATGCCAATCACAGTGGTT+TGG - Chr2:68411356-68411375 MsG0280010350.01.T01:three_prime_UTR 45.0%
TGATTGGCATCACACAGATG+AGG + Chr2:68411364-68411383 MsG0280010349.01.T01:intron 45.0%
TGGTGGAAATCAGTGGACAA+TGG + Chr2:68412798-68412817 MsG0280010349.01.T01:CDS 45.0%
TTCTTCCAATCTGCATCCTC+TGG - Chr2:68412903-68412922 MsG0280010350.01.T01:intron 45.0%
! AAGGGTTCTGATCATGCTCA+AGG + Chr2:68412980-68412999 MsG0280010349.01.T01:CDS 45.0%
! ATGATTGGAGGTGTGGTCAT+TGG + Chr2:68412846-68412865 MsG0280010349.01.T01:CDS 45.0%
! CCATGGGATTTGGTAGTATG+GGG + Chr2:68412109-68412128 MsG0280010349.01.T01:intron 45.0%
! CCATGTTGATAAAGGGAAGG+TGG + Chr2:68412778-68412797 MsG0280010349.01.T01:CDS 45.0%
! TGTTGATAAAGGGAAGGTGG+TGG + Chr2:68412781-68412800 MsG0280010349.01.T01:CDS 45.0%
! TTGCTTCTCAGAGACTTGCT+AGG + Chr2:68412305-68412324 MsG0280010349.01.T01:intron 45.0%
!! CCATAGAGGAAAGCATCAGA+AGG - Chr2:68411288-68411307 MsG0280010350.01.T01:three_prime_UTR 45.0%
!! CTCAGAGACTTGCTAGGATA+GGG + Chr2:68412311-68412330 MsG0280010349.01.T01:intron 45.0%
!! CTTTTTAGTCAGCCCTTCGT+AGG - Chr2:68412248-68412267 MsG0280010350.01.T01:intron 45.0%
!! GCCATTTTGAGTCATCGACA+TGG - Chr2:68412223-68412242 MsG0280010350.01.T01:intron 45.0%
!! TCTCAGAGACTTGCTAGGAT+AGG + Chr2:68412310-68412329 MsG0280010349.01.T01:intron 45.0%
!! AAAATTTGAAAAATTAAATA+GGG - Chr2:68412615-68412634 MsG0280010350.01.T01:intron 5.0%
!! TAAAATTTGAAAAATTAAAT+AGG - Chr2:68412616-68412635 MsG0280010350.01.T01:intron 5.0%
AGATGCCAGAGGATGCAGAT+TGG + Chr2:68412895-68412914 MsG0280010349.01.T01:CDS 50.0%
ATCCCGACGGCTGATACTTA+CGG - Chr2:68412284-68412303 MsG0280010350.01.T01:intron 50.0%
CCCCATACTACCAAATCCCA+TGG - Chr2:68412112-68412131 MsG0280010350.01.T01:intron 50.0%
CTGTGTGATGCCAATCACAG+TGG - Chr2:68411361-68411380 MsG0280010350.01.T01:three_prime_UTR 50.0%
TAGAAGGCTTGAGATGCCAG+AGG + Chr2:68412884-68412903 MsG0280010349.01.T01:CDS 50.0%
TCGTAGATGCACATGCTGCA+CGG - Chr2:68413411-68413430 MsG0280010350.01.T01:three_prime_UTR 50.0%
! ATTGGAGGTGTGGTCATTGG+TGG + Chr2:68412849-68412868 MsG0280010349.01.T01:CDS 50.0%
! GATGGATTCGGATTACCTGC+TGG + Chr2:68413322-68413341 MsG0280010349.01.T01:three_prime_UTR 50.0%
!! GCCAATCACAGTGGTTTGGT+TGG - Chr2:68411352-68411371 MsG0280010350.01.T01:three_prime_UTR 50.0%
CACCGTAAGTATCAGCCGTC+GGG + Chr2:68412279-68412298 MsG0280010349.01.T01:intron 55.0%
GCACCGTAAGTATCAGCCGT+CGG + Chr2:68412278-68412297 MsG0280010349.01.T01:intron 55.0%
! ATGGGGTGCCAAATCCCACA+TGG + Chr2:68412126-68412145 MsG0280010349.01.T01:intron 55.0%
!! GGGAAGGTGGTGGAAATCAG+TGG + Chr2:68412791-68412810 MsG0280010349.01.T01:CDS 55.0%
GGGAGGGTTCCCCAAGTTCT+TGG + Chr2:68412428-68412447 MsG0280010349.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 68411105 68413534 68411105 ID=MsG0280010349.01;Name=MsG0280010349.01
Chr2 mRNA 68411105 68413534 68411105 ID=MsG0280010349.01.T01;Parent=MsG0280010349.01;Name=MsG0280010349.01.T01;_AED=0.45;_eAED=0.45;_QI=0|0|0.5|1|0|0|2|491|143
Chr2 exon 68411105 68411230 68411105 ID=MsG0280010349.01.T01:exon:18548;Parent=MsG0280010349.01.T01
Chr2 exon 68412738 68413534 68412738 ID=MsG0280010349.01.T01:exon:18549;Parent=MsG0280010349.01.T01
Chr2 CDS 68411105 68411230 68411105 ID=MsG0280010349.01.T01:cds;Parent=MsG0280010349.01.T01
Chr2 CDS 68412738 68413043 68412738 ID=MsG0280010349.01.T01:cds;Parent=MsG0280010349.01.T01
Chr2 three_prime_UTR 68413044 68413534 68413044 ID=MsG0280010349.01.T01:three_prime_utr;Parent=MsG0280010349.01.T01
Gene Sequence

>MsG0280010349.01.T01

ATGGCTGGTTCTAACAAGAAGGTTGAGGTGATTTTAGATGATCAAACTCCAAATAAATGGTGTGTTTCATTAGGAGATGAAACTTTCAAAAGATTCTTCAGCATGACTAATCCAACAGTTCACAAGTTATTTTTCAAAACAGGAACTGGGAAAACAACATTCAAGTCCATGTTGATAAAGGGAAGGTGGTGGAAATCAGTGGACAATGGAAGCAGCAAAGAGACTCGAAGACAAATGATTGGAGGTGTGGTCATTGGTGGAAAATGGATATGTAGAAGGCTTGAGATGCCAGAGGATGCAGATTGGAAGAATATACAAGCATTCATATATAATGACATATTCTTAGAAATTAAATGCCAAAGATCAAAAAGGGTTCTGATCATGCTCAAGGATAAGATGTGGCTTGAGATTCATTATGCAGAAACAGATTAA

Protein sequence

>MsG0280010349.01.T01

MAGSNKKVEVILDDQTPNKWCVSLGDETFKRFFSMTNPTVHKLFFKTGTGKTTFKSMLIKGRWWKSVDNGSSKETRRQMIGGVVIGGKWICRRLEMPEDADWKNIQAFIYNDIFLEIKCQRSKRVLIMLKDKMWLEIHYAETD*