AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880041908.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041908.01.T01 MTR_8g005720 67.895 380 65 8 1 338 86 450 3.78e-152 438
MsG0880041908.01.T01 MTR_7g073530 57.838 370 119 5 1 333 81 450 1.22e-132 387
MsG0880041908.01.T01 MTR_5g053450 34.160 363 180 10 7 333 107 446 5.04e-52 181
MsG0880041908.01.T01 MTR_7g073540 59.848 132 31 2 184 307 1 118 3.69e-43 147
MsG0880041908.01.T01 MTR_7g073560 75.949 79 19 0 255 333 19 97 6.74e-37 130
MsG0880041908.01.T01 MTR_7g073610 75.949 79 19 0 255 333 19 97 6.74e-37 130
MsG0880041908.01.T01 MTR_7g073580 61.842 76 15 1 184 259 1 62 1.10e-23 93.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041908.01.T01 AT5G01920 56.397 383 115 7 2 337 82 459 1.29e-130 382
MsG0880041908.01.T01 AT5G01920 56.397 383 115 7 2 337 82 459 1.29e-130 382
MsG0880041908.01.T01 AT1G68830 32.011 353 185 8 16 333 101 433 1.09e-49 174

Find 99 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGACTTGGTGTTTCTTC+TGG 0.130923 8:-1058163 None:intergenic
CAGATAAACGTCCTCTTCTT+AGG 0.174572 8:-1058564 None:intergenic
CAGATTAAACTCATTGATTT+TGG 0.180146 8:+1058050 MsG0880041908.01.T01:CDS
GTCATTTGTGTTGTTTATTC+TGG 0.181182 8:+1056769 MsG0880041908.01.T01:CDS
CAGATTCACTATCAAGAATT+TGG 0.194374 8:-1058496 None:intergenic
ATTCAAGGGGCTGAAGAATT+TGG 0.244608 8:+1057483 MsG0880041908.01.T01:CDS
GCAAGACCAGGTGTTCTTAT+TGG 0.255792 8:+1056635 MsG0880041908.01.T01:CDS
CAAGAGCACTTGGTGGTTAT+AGG 0.257964 8:+1058822 MsG0880041908.01.T01:three_prime_UTR
TCTGGGAGTACATAGAGTTC+TGG 0.259567 8:-1058145 None:intergenic
GAGACATCCTTATTTCTTCT+AGG 0.260435 8:+1058600 MsG0880041908.01.T01:three_prime_UTR
AGGAAGTCAGCACATGTTTC+AGG 0.264333 8:-1057548 None:intergenic
GAGGACTTGGTGTTTCTTCT+GGG 0.290835 8:-1058162 None:intergenic
TGATCTGTTTGATACTTATT+CGG 0.294442 8:+1058337 MsG0880041908.01.T01:CDS
AACTTAGAATCTGTCATGTT+TGG 0.314194 8:+1057873 MsG0880041908.01.T01:CDS
TGTTGTTTATTCTGGTGTTT+TGG 0.315643 8:+1056777 MsG0880041908.01.T01:CDS
TCTTAAGAGAAGTAATTATC+TGG 0.321848 8:-1057959 None:intergenic
ATCACCTCCTAGAAGAAATA+AGG 0.336032 8:-1058607 None:intergenic
TTGAGGAATGGTTCAATTAC+CGG 0.351191 8:+1057510 MsG0880041908.01.T01:CDS
CAACTTAGTGGTCACCAAAC+AGG 0.353532 8:+1058025 MsG0880041908.01.T01:CDS
CAAATTCTTGATAGTGAATC+TGG 0.355583 8:+1058497 MsG0880041908.01.T01:CDS
AAGAGCACTTGGTGGTTATA+GGG 0.367179 8:+1058823 MsG0880041908.01.T01:three_prime_UTR
GGGTTCCAACCTTGTTGCCT+TGG 0.384780 8:-1056845 None:intergenic
CTTAAGAAAATTCATGATAC+AGG 0.385572 8:+1057975 MsG0880041908.01.T01:CDS
CTGGGAGTACATAGAGTTCT+GGG 0.385893 8:-1058144 None:intergenic
GTTGCGCTCTTTCATGTAAT+CGG 0.387894 8:-1057841 None:intergenic
CAAAGCAGCAGGAGACCTTA+AGG 0.395863 8:-1058393 None:intergenic
CTGTTTGATACTTATTCGGC+TGG 0.396996 8:+1058341 MsG0880041908.01.T01:CDS
GCAGGTAAGGTTGGAATTCA+AGG 0.416357 8:+1057468 MsG0880041908.01.T01:intron
TTAAAATTCTTCAAAGCAGC+AGG 0.436042 8:-1058404 None:intergenic
CAAGTTGAAGAGGAGCAAAA+AGG 0.442438 8:-1056673 None:intergenic
AAATGGCAATACCAACCTTA+AGG 0.442773 8:+1058378 MsG0880041908.01.T01:CDS
ATCTGGTAGAGGCTGGGACT+TGG 0.446958 8:+1058514 MsG0880041908.01.T01:CDS
CTATCAAGAATTTGGAGGTC+GGG 0.446971 8:-1058488 None:intergenic
CTGAAGAATTTGGTGAATTG+AGG 0.450743 8:+1057493 MsG0880041908.01.T01:CDS
TTTCTCGTTGGAGATAAAAT+CGG 0.456491 8:+1056740 MsG0880041908.01.T01:CDS
ATTTCTTCTAGGAGGTGATC+AGG 0.459869 8:+1058611 MsG0880041908.01.T01:three_prime_UTR
GAATAAGTATCAAACAGATC+AGG 0.461033 8:-1058335 None:intergenic
ACGTTCCTGACCGCACCCTT+TGG 0.463478 8:+1058105 MsG0880041908.01.T01:CDS
TTGGTGCAGCAACAGACCTT+CGG 0.468641 8:+1058069 MsG0880041908.01.T01:CDS
GAAACATGTGCTGACTTCCT+TGG 0.472511 8:+1057551 MsG0880041908.01.T01:CDS
AATTATCAGACATGCAAAGA+TGG 0.476231 8:+1056570 None:intergenic
TATAAAGCCAGCCAACTTAG+TGG 0.477446 8:+1058013 MsG0880041908.01.T01:CDS
ATTGAATATGCAGGTAAGGT+TGG 0.489784 8:+1057459 MsG0880041908.01.T01:intron
TTGGTGACCACTAAGTTGGC+TGG 0.491398 8:-1058020 None:intergenic
GAGTTTAATCTGTCCCTGTT+TGG 0.495629 8:-1058039 None:intergenic
AGATAAACGTCCTCTTCTTA+GGG 0.501211 8:-1058563 None:intergenic
GGGCAATAGTCGGGATCCAA+AGG 0.503037 8:-1058121 None:intergenic
ATGACAGATTCTAAGTTTGA+AGG 0.504582 8:-1057867 None:intergenic
TGGGATTGTACTACTTCAAA+TGG 0.504661 8:+1058361 MsG0880041908.01.T01:CDS
ACAAACTCACAGTTCACAAA+AGG 0.512881 8:+1057593 MsG0880041908.01.T01:CDS
ATAGTGAATCTGGTAGAGGC+TGG 0.515673 8:+1058507 MsG0880041908.01.T01:CDS
AAAATATAAATCTACATGGC+AGG 0.520449 8:-1058773 None:intergenic
GGGATCCAAAGGGTGCGGTC+AGG 0.520742 8:-1058110 None:intergenic
TGACAGATTCTAAGTTTGAA+GGG 0.525444 8:-1057866 None:intergenic
CAGGTAAGGTTGGAATTCAA+GGG 0.527945 8:+1057469 MsG0880041908.01.T01:intron
CTTGATAGTGAATCTGGTAG+AGG 0.528425 8:+1058503 MsG0880041908.01.T01:CDS
GGAGGGAGTATACTCGCCTC+AGG 0.542612 8:+1058465 MsG0880041908.01.T01:CDS
TATCAGCCACAAAACTTCCA+AGG 0.543904 8:-1057568 None:intergenic
ACAAAGCTTATATCTGAAAG+AGG 0.543985 8:+1058539 MsG0880041908.01.T01:CDS
CAAACACTAGCAAGAGCACT+TGG 0.545666 8:+1058812 MsG0880041908.01.T01:three_prime_UTR
GGAAGGAGAAACTTGAAGAC+TGG 0.549789 8:+1056713 MsG0880041908.01.T01:CDS
ATTATCAGACATGCAAAGAT+GGG 0.550083 8:+1056571 None:intergenic
GATGTTGAGGTGGACAAGAG+AGG 0.551839 8:+1056817 MsG0880041908.01.T01:CDS
CTGTTTGGTGACCACTAAGT+TGG 0.553834 8:-1058024 None:intergenic
ATTCACTATCAAGAATTTGG+AGG 0.555926 8:-1058493 None:intergenic
TTAGCAAAACCAAGTTGAAG+AGG 0.569301 8:-1056683 None:intergenic
CGTAATTCTTTCCGATCCGA+AGG 0.571846 8:-1058085 None:intergenic
ACATCCTTATTTCTTCTAGG+AGG 0.572819 8:+1058603 MsG0880041908.01.T01:three_prime_UTR
CAGGTGCTGCTCTAGATAGC+CGG 0.573871 8:-1057529 None:intergenic
AACTTAGTGGTCACCAAACA+GGG 0.574734 8:+1058026 MsG0880041908.01.T01:CDS
ATATACTGACATTATCATGC+TGG 0.575534 8:-1058675 None:intergenic
ATGTTTGGACGTGTGTTGCA+AGG 0.579309 8:+1057888 MsG0880041908.01.T01:CDS
TGTTTGATACTTATTCGGCT+GGG 0.581574 8:+1058342 MsG0880041908.01.T01:CDS
GAATTTGGAGGTCGGGCCTG+AGG 0.582291 8:-1058481 None:intergenic
TGGGAGTACATAGAGTTCTG+GGG 0.582528 8:-1058143 None:intergenic
AATAAGTATCAAACAGATCA+GGG 0.584272 8:-1058334 None:intergenic
GGCAATAGTCGGGATCCAAA+GGG 0.588096 8:-1058120 None:intergenic
TAGTGAATCTGGTAGAGGCT+GGG 0.593926 8:+1058508 MsG0880041908.01.T01:CDS
GTTGGAGATAAAATCGGTGA+AGG 0.596756 8:+1056746 MsG0880041908.01.T01:CDS
GAATTTGGTGAATTGAGGAA+TGG 0.602792 8:+1057498 MsG0880041908.01.T01:CDS
GGGAGTACATAGAGTTCTGG+GGG 0.603048 8:-1058142 None:intergenic
GCAGCAGGAGACCTTAAGGT+TGG 0.603473 8:-1058389 None:intergenic
TGAAAGAGGTCCCTAAGAAG+AGG 0.604622 8:+1058553 MsG0880041908.01.T01:exon
ACTATCAAGAATTTGGAGGT+CGG 0.607440 8:-1058489 None:intergenic
AAAGAATGTGGTGGATGTTG+AGG 0.609920 8:+1056804 MsG0880041908.01.T01:CDS
TAGTCGGGATCCAAAGGGTG+CGG 0.616347 8:-1058115 None:intergenic
ACACTAGCAAGAGCACTTGG+TGG 0.620300 8:+1058815 MsG0880041908.01.T01:three_prime_UTR
ATGGCACCAATAAGAACACC+TGG 0.630764 8:-1056641 None:intergenic
CAGAATGAAATGATGAGAGA+AGG 0.635481 8:-1058855 None:intergenic
AGTGAAAATATAAATCTACA+TGG 0.637143 8:-1058777 None:intergenic
GAGGAAAATCCAAGGCAACA+AGG 0.637928 8:+1056836 MsG0880041908.01.T01:CDS
GAATGTGGTGGATGTTGAGG+TGG 0.645659 8:+1056807 MsG0880041908.01.T01:CDS
TTGGAGATAAAATCGGTGAA+GGG 0.647246 8:+1056747 MsG0880041908.01.T01:CDS
GGACAAGAGAGGAAAATCCA+AGG 0.649587 8:+1056828 MsG0880041908.01.T01:CDS
TTTGGTCTCAAAGAATGTGG+TGG 0.650196 8:+1056795 MsG0880041908.01.T01:CDS
ATATACTTAACTGCAAGACC+AGG 0.651960 8:+1056623 MsG0880041908.01.T01:CDS
GCAGCAACAGACCTTCGGAT+CGG 0.658142 8:+1058074 MsG0880041908.01.T01:CDS
AGGTAAGGTTGGAATTCAAG+GGG 0.673698 8:+1057470 MsG0880041908.01.T01:intron
GGAGTACATAGAGTTCTGGG+GGG 0.810828 8:-1058141 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAATGAATTAGAAA+AGG - Chr8:1058704-1058723 None:intergenic 10.0%
!!! AATAAAATGAATTTTAGTAA+AGG + Chr8:1056934-1056953 MsG0880041908.01.T01:intron 10.0%
!! TATGATTACATTCAATTATT+TGG + Chr8:1057067-1057086 MsG0880041908.01.T01:intron 15.0%
!! TTTATTTAGACAAGAAATAA+GGG - Chr8:1056920-1056939 None:intergenic 15.0%
!!! AATTCTGTTTTTAATGATTA+AGG + Chr8:1057400-1057419 MsG0880041908.01.T01:intron 15.0%
!!! TTTTATTTAGACAAGAAATA+AGG - Chr8:1056921-1056940 None:intergenic 15.0%
!! AGTGAAAATATAAATCTACA+TGG - Chr8:1058780-1058799 None:intergenic 20.0%
!! ATATGATTTGAAAAAATGGA+GGG + Chr8:1058448-1058467 MsG0880041908.01.T01:CDS 20.0%
!! GATTATTTCATATATTGCAT+TGG + Chr8:1058267-1058286 MsG0880041908.01.T01:intron 20.0%
!! TTATTTAGACAAGAAATAAG+GGG - Chr8:1056919-1056938 None:intergenic 20.0%
!!! AAATGAATTTTAGTAAAGGT+AGG + Chr8:1056938-1056957 MsG0880041908.01.T01:intron 20.0%
!!! AATAACTTTATCCTTAGTTT+TGG - Chr8:1056869-1056888 None:intergenic 20.0%
!!! ATAACTTTATCCTTAGTTTT+GGG - Chr8:1056868-1056887 None:intergenic 20.0%
!!! ATATTTTCACGACATAATTA+GGG - Chr8:1058247-1058266 None:intergenic 20.0%
!!! TGCTTTGAAGAATTTTAATT+TGG + Chr8:1058409-1058428 MsG0880041908.01.T01:CDS 20.0%
!!! TTTTTCAGAATTATTGTTGA+AGG + Chr8:1058720-1058739 MsG0880041908.01.T01:three_prime_UTR 20.0%
! AAAATATAAATCTACATGGC+AGG - Chr8:1058776-1058795 None:intergenic 25.0%
! AATAAGTATCAAACAGATCA+GGG - Chr8:1058337-1058356 None:intergenic 25.0%
! AATTTGGAAATAAAAACCTG+TGG + Chr8:1058425-1058444 MsG0880041908.01.T01:CDS 25.0%
! ATAAAACTTTAGACATGTCT+AGG - Chr8:1057700-1057719 None:intergenic 25.0%
! ATTCCTTAACATACACTAAT+TGG + Chr8:1057784-1057803 MsG0880041908.01.T01:intron 25.0%
! CCTTTACATTCAATTATTAC+CGG + Chr8:1057103-1057122 MsG0880041908.01.T01:intron 25.0%
! CTTAAGAAAATTCATGATAC+AGG + Chr8:1057975-1057994 MsG0880041908.01.T01:CDS 25.0%
! CTTAATTTATCATCTGAATC+TGG + Chr8:1057754-1057773 MsG0880041908.01.T01:intron 25.0%
! GATATGATTTGAAAAAATGG+AGG + Chr8:1058447-1058466 MsG0880041908.01.T01:CDS 25.0%
! GGATAAAGTTATTCTCAAAA+AGG + Chr8:1056876-1056895 MsG0880041908.01.T01:intron 25.0%
! GTGGATATGATTTGAAAAAA+TGG + Chr8:1058444-1058463 MsG0880041908.01.T01:CDS 25.0%
! TCTTAAGAGAAGTAATTATC+TGG - Chr8:1057962-1057981 None:intergenic 25.0%
! TGATCTGTTTGATACTTATT+CGG + Chr8:1058337-1058356 MsG0880041908.01.T01:CDS 25.0%
! TTATTGCTTGTACTTCATTT+AGG + Chr8:1057716-1057735 MsG0880041908.01.T01:intron 25.0%
!! CATATTTTCACGACATAATT+AGG - Chr8:1058248-1058267 None:intergenic 25.0%
!! GGAATTTTATATCTCAAAGA+AGG + Chr8:1058741-1058760 MsG0880041908.01.T01:three_prime_UTR 25.0%
!!! CAGATTAAACTCATTGATTT+TGG + Chr8:1058050-1058069 MsG0880041908.01.T01:CDS 25.0%
!!! TTAAATTTTAACCATCCATG+CGG + Chr8:1057298-1057317 MsG0880041908.01.T01:intron 25.0%
!!! TTTTTTCAAATCATATCCAC+AGG - Chr8:1058444-1058463 None:intergenic 25.0%
AAATAAACCTGCCATAAGAT+TGG - Chr8:1058217-1058236 None:intergenic 30.0%
AACTTAGAATCTGTCATGTT+TGG + Chr8:1057873-1057892 MsG0880041908.01.T01:CDS 30.0%
ACAAAGCTTATATCTGAAAG+AGG + Chr8:1058539-1058558 MsG0880041908.01.T01:CDS 30.0%
ACTAATTGAATATGCAGGTA+AGG + Chr8:1057455-1057474 MsG0880041908.01.T01:intron 30.0%
AGACATGTCTAGGTAATTTA+AGG - Chr8:1057690-1057709 None:intergenic 30.0%
AGCTAACTAATTGAATATGC+AGG + Chr8:1057450-1057469 MsG0880041908.01.T01:intron 30.0%
ATATACTGACATTATCATGC+TGG - Chr8:1058678-1058697 None:intergenic 30.0%
ATGACAGATTCTAAGTTTGA+AGG - Chr8:1057870-1057889 None:intergenic 30.0%
ATGCTTAAAACAACCAAAAC+AGG + Chr8:1056975-1056994 MsG0880041908.01.T01:intron 30.0%
ATGTCATATCTCTTTCAATG+TGG + Chr8:1057240-1057259 MsG0880041908.01.T01:intron 30.0%
ATTCACTATCAAGAATTTGG+AGG - Chr8:1058496-1058515 None:intergenic 30.0%
CAGATTCACTATCAAGAATT+TGG - Chr8:1058499-1058518 None:intergenic 30.0%
CCGGTAATAATTGAATGTAA+AGG - Chr8:1057106-1057125 None:intergenic 30.0%
GAATAAGTATCAAACAGATC+AGG - Chr8:1058338-1058357 None:intergenic 30.0%
TCTCCAATTAGTGTATGTTA+AGG - Chr8:1057790-1057809 None:intergenic 30.0%
TGACAGATTCTAAGTTTGAA+GGG - Chr8:1057869-1057888 None:intergenic 30.0%
TGTAGTGTCTCTTAGAATTT+GGG + Chr8:1057140-1057159 MsG0880041908.01.T01:intron 30.0%
TGTCATATCTCTTTCAATGT+GGG + Chr8:1057241-1057260 MsG0880041908.01.T01:intron 30.0%
TTAAAATTCTTCAAAGCAGC+AGG - Chr8:1058407-1058426 None:intergenic 30.0%
TTTCTCGTTGGAGATAAAAT+CGG + Chr8:1056740-1056759 MsG0880041908.01.T01:CDS 30.0%
! GTTTTGCTAATTTATCTGGA+AGG + Chr8:1056696-1056715 MsG0880041908.01.T01:CDS 30.0%
!! CAAATTCTTGATAGTGAATC+TGG + Chr8:1058497-1058516 MsG0880041908.01.T01:CDS 30.0%
!! GTCATTTGTGTTGTTTATTC+TGG + Chr8:1056769-1056788 MsG0880041908.01.T01:CDS 30.0%
!! TGTTGTTTATTCTGGTGTTT+TGG + Chr8:1056777-1056796 MsG0880041908.01.T01:CDS 30.0%
!!! CTTGGTTTTGCTAATTTATC+TGG + Chr8:1056692-1056711 MsG0880041908.01.T01:CDS 30.0%
AAATGGCAATACCAACCTTA+AGG + Chr8:1058378-1058397 MsG0880041908.01.T01:CDS 35.0%
ACAAACTCACAGTTCACAAA+AGG + Chr8:1057593-1057612 MsG0880041908.01.T01:CDS 35.0%
ACTATCAAGAATTTGGAGGT+CGG - Chr8:1058492-1058511 None:intergenic 35.0%
AGATAAACGTCCTCTTCTTA+GGG - Chr8:1058566-1058585 None:intergenic 35.0%
AGCAAAAAGGTAAGCATCAA+TGG - Chr8:1056663-1056682 None:intergenic 35.0%
AGTTCACAAAAGGTGGAAAA+TGG + Chr8:1057603-1057622 MsG0880041908.01.T01:intron 35.0%
ATATACTTAACTGCAAGACC+AGG + Chr8:1056623-1056642 MsG0880041908.01.T01:CDS 35.0%
ATCACCTCCTAGAAGAAATA+AGG - Chr8:1058610-1058629 None:intergenic 35.0%
ATTGAATATGCAGGTAAGGT+TGG + Chr8:1057459-1057478 MsG0880041908.01.T01:intron 35.0%
CAGAATGAAATGATGAGAGA+AGG - Chr8:1058858-1058877 None:intergenic 35.0%
GTAACTCAACCCTACAAAAT+CGG + Chr8:1057169-1057188 MsG0880041908.01.T01:intron 35.0%
GTGTAGTGTCTCTTAGAATT+TGG + Chr8:1057139-1057158 MsG0880041908.01.T01:intron 35.0%
TGCAATCGAAATATGAGTCA+AGG - Chr8:1057650-1057669 None:intergenic 35.0%
TGGAGAGTTATCATATCACA+GGG + Chr8:1057804-1057823 MsG0880041908.01.T01:intron 35.0%
TGGGATTGTACTACTTCAAA+TGG + Chr8:1058361-1058380 MsG0880041908.01.T01:CDS 35.0%
TGTTTGATACTTATTCGGCT+GGG + Chr8:1058342-1058361 MsG0880041908.01.T01:CDS 35.0%
TTGAGGAATGGTTCAATTAC+CGG + Chr8:1057510-1057529 MsG0880041908.01.T01:CDS 35.0%
TTGCTTGTACTTCATTTAGG+TGG + Chr8:1057719-1057738 MsG0880041908.01.T01:intron 35.0%
TTGGAGAGTTATCATATCAC+AGG + Chr8:1057803-1057822 MsG0880041908.01.T01:intron 35.0%
TTGGAGATAAAATCGGTGAA+GGG + Chr8:1056747-1056766 MsG0880041908.01.T01:CDS 35.0%
! ACATCCTTATTTCTTCTAGG+AGG + Chr8:1058603-1058622 MsG0880041908.01.T01:three_prime_UTR 35.0%
! AGATGGGAGTTTCTTCTTTT+TGG + Chr8:1056587-1056606 MsG0880041908.01.T01:CDS 35.0%
! CGTTCTTTTCACCAATCTTA+TGG + Chr8:1058203-1058222 MsG0880041908.01.T01:intron 35.0%
! CTGAAGAATTTGGTGAATTG+AGG + Chr8:1057493-1057512 MsG0880041908.01.T01:CDS 35.0%
! GAATTTGGTGAATTGAGGAA+TGG + Chr8:1057498-1057517 MsG0880041908.01.T01:CDS 35.0%
! GAGACATCCTTATTTCTTCT+AGG + Chr8:1058600-1058619 MsG0880041908.01.T01:three_prime_UTR 35.0%
! TTAGCAAAACCAAGTTGAAG+AGG - Chr8:1056686-1056705 None:intergenic 35.0%
!! ATGGCTTGTTTGGAAATTTG+AGG + Chr8:1057622-1057641 MsG0880041908.01.T01:intron 35.0%
!!! TGTTTTGGTCTCAAAGAATG+TGG + Chr8:1056792-1056811 MsG0880041908.01.T01:CDS 35.0%
!!! TTCTTTTTGGTGGACTCATA+TGG + Chr8:1056600-1056619 MsG0880041908.01.T01:CDS 35.0%
AAAATCCAAGGCAACAAGGT+TGG + Chr8:1056840-1056859 MsG0880041908.01.T01:intron 40.0%
AACTCACAGTTCACAAAAGG+TGG + Chr8:1057596-1057615 MsG0880041908.01.T01:intron 40.0%
AACTTAGTGGTCACCAAACA+GGG + Chr8:1058026-1058045 MsG0880041908.01.T01:CDS 40.0%
AAGGTTGGAACCCAAAACTA+AGG + Chr8:1056855-1056874 MsG0880041908.01.T01:intron 40.0%
AATGTAAAGGACATGTGTCG+TGG - Chr8:1057093-1057112 None:intergenic 40.0%
AGGTAAGGTTGGAATTCAAG+GGG + Chr8:1057470-1057489 MsG0880041908.01.T01:intron 40.0%
ATTCAAGGGGCTGAAGAATT+TGG + Chr8:1057483-1057502 MsG0880041908.01.T01:CDS 40.0%
CAGATAAACGTCCTCTTCTT+AGG - Chr8:1058567-1058586 None:intergenic 40.0%
CAGGTAAGGTTGGAATTCAA+GGG + Chr8:1057469-1057488 MsG0880041908.01.T01:intron 40.0%
CCAAAACAGGCTATAGCATT+AGG + Chr8:1056988-1057007 MsG0880041908.01.T01:intron 40.0%
CTACACTGACATTAACATGC+CGG - Chr8:1057125-1057144 None:intergenic 40.0%
CTATCAAGAATTTGGAGGTC+GGG - Chr8:1058491-1058510 None:intergenic 40.0%
CTGTTTGATACTTATTCGGC+TGG + Chr8:1058341-1058360 MsG0880041908.01.T01:CDS 40.0%
GAGTTTAATCTGTCCCTGTT+TGG - Chr8:1058042-1058061 None:intergenic 40.0%
GTGTCTCTTAGAATTTGGGT+TGG + Chr8:1057144-1057163 MsG0880041908.01.T01:intron 40.0%
GTTGCGCTCTTTCATGTAAT+CGG - Chr8:1057844-1057863 None:intergenic 40.0%
GTTGGAGATAAAATCGGTGA+AGG + Chr8:1056746-1056765 MsG0880041908.01.T01:CDS 40.0%
TATAAAGCCAGCCAACTTAG+TGG + Chr8:1058013-1058032 MsG0880041908.01.T01:CDS 40.0%
TATCAGCCACAAAACTTCCA+AGG - Chr8:1057571-1057590 None:intergenic 40.0%
TTTGGTCTCAAAGAATGTGG+TGG + Chr8:1056795-1056814 MsG0880041908.01.T01:CDS 40.0%
! AAGACTGGTGATTTTCTCGT+TGG + Chr8:1056728-1056747 MsG0880041908.01.T01:CDS 40.0%
! ATTTCTTCTAGGAGGTGATC+AGG + Chr8:1058611-1058630 MsG0880041908.01.T01:three_prime_UTR 40.0%
! CAAGCAACAACTTTAGCTTC+TGG + Chr8:1057331-1057350 MsG0880041908.01.T01:intron 40.0%
! CAAGTTGAAGAGGAGCAAAA+AGG - Chr8:1056676-1056695 None:intergenic 40.0%
! CCTAATGCTATAGCCTGTTT+TGG - Chr8:1056991-1057010 None:intergenic 40.0%
! CTTTTCACCAATCTTATGGC+AGG + Chr8:1058207-1058226 MsG0880041908.01.T01:intron 40.0%
! CTTTTTGCTCCTCTTCAACT+TGG + Chr8:1056674-1056693 MsG0880041908.01.T01:CDS 40.0%
! TGACTTCCTTGGAAGTTTTG+TGG + Chr8:1057562-1057581 MsG0880041908.01.T01:CDS 40.0%
! TGGGAGTTTCTTCTTTTTGG+TGG + Chr8:1056590-1056609 MsG0880041908.01.T01:CDS 40.0%
!! AAAGAATGTGGTGGATGTTG+AGG + Chr8:1056804-1056823 MsG0880041908.01.T01:CDS 40.0%
!! AAGAGCACTTGGTGGTTATA+GGG + Chr8:1058823-1058842 MsG0880041908.01.T01:three_prime_UTR 40.0%
!! AAGGTGGAAAATGGCTTGTT+TGG + Chr8:1057612-1057631 MsG0880041908.01.T01:intron 40.0%
!! ACCTTACAAGCCGATTTTGT+AGG - Chr8:1057182-1057201 None:intergenic 40.0%
!! CCTTACAAGCCGATTTTGTA+GGG - Chr8:1057181-1057200 None:intergenic 40.0%
!! CTTGATAGTGAATCTGGTAG+AGG + Chr8:1058503-1058522 MsG0880041908.01.T01:CDS 40.0%
AGCTATGTACCACAGACACT+CGG + Chr8:1057011-1057030 MsG0880041908.01.T01:intron 45.0%
AGGAAGTCAGCACATGTTTC+AGG - Chr8:1057551-1057570 None:intergenic 45.0%
ATAGTGAATCTGGTAGAGGC+TGG + Chr8:1058507-1058526 MsG0880041908.01.T01:CDS 45.0%
ATCTTCAATCCGAGTGTCTG+TGG - Chr8:1057023-1057042 None:intergenic 45.0%
ATGGCACCAATAAGAACACC+TGG - Chr8:1056644-1056663 None:intergenic 45.0%
ATGTTTGGACGTGTGTTGCA+AGG + Chr8:1057888-1057907 MsG0880041908.01.T01:CDS 45.0%
CAACTTAGTGGTCACCAAAC+AGG + Chr8:1058025-1058044 MsG0880041908.01.T01:CDS 45.0%
CGTAATTCTTTCCGATCCGA+AGG - Chr8:1058088-1058107 None:intergenic 45.0%
CTCCCGATAGACATTGTGAA+GGG - Chr8:1057268-1057287 None:intergenic 45.0%
GAGGAAAATCCAAGGCAACA+AGG + Chr8:1056836-1056855 MsG0880041908.01.T01:CDS 45.0%
GCAAGACCAGGTGTTCTTAT+TGG + Chr8:1056635-1056654 MsG0880041908.01.T01:CDS 45.0%
GCAGGTAAGGTTGGAATTCA+AGG + Chr8:1057468-1057487 MsG0880041908.01.T01:intron 45.0%
GGAAGGAGAAACTTGAAGAC+TGG + Chr8:1056713-1056732 MsG0880041908.01.T01:CDS 45.0%
GGACAAGAGAGGAAAATCCA+AGG + Chr8:1056828-1056847 MsG0880041908.01.T01:CDS 45.0%
GGTCCCTTCACAATGTCTAT+CGG + Chr8:1057262-1057281 MsG0880041908.01.T01:intron 45.0%
GGTGAAAAGAACGCAGCAAT+TGG - Chr8:1058196-1058215 None:intergenic 45.0%
GTCCCTTCACAATGTCTATC+GGG + Chr8:1057263-1057282 MsG0880041908.01.T01:intron 45.0%
GTTAAGTAAAGCCGCATGGA+TGG - Chr8:1057312-1057331 None:intergenic 45.0%
TAGTGAATCTGGTAGAGGCT+GGG + Chr8:1058508-1058527 MsG0880041908.01.T01:CDS 45.0%
TCGGATTGAAGATGTGTCCA+CGG + Chr8:1057030-1057049 MsG0880041908.01.T01:intron 45.0%
TGAAAGAGGTCCCTAAGAAG+AGG + Chr8:1058553-1058572 MsG0880041908.01.T01:exon 45.0%
! CTGGGAGTACATAGAGTTCT+GGG - Chr8:1058147-1058166 None:intergenic 45.0%
! CTGTTTGGTGACCACTAAGT+TGG - Chr8:1058027-1058046 None:intergenic 45.0%
! GCTTGTTAAGTAAAGCCGCA+TGG - Chr8:1057316-1057335 None:intergenic 45.0%
! TCTGGGAGTACATAGAGTTC+TGG - Chr8:1058148-1058167 None:intergenic 45.0%
! TGGGAGTACATAGAGTTCTG+GGG - Chr8:1058146-1058165 None:intergenic 45.0%
!! CAAACACTAGCAAGAGCACT+TGG + Chr8:1058812-1058831 MsG0880041908.01.T01:three_prime_UTR 45.0%
!! CAAGAGCACTTGGTGGTTAT+AGG + Chr8:1058822-1058841 MsG0880041908.01.T01:three_prime_UTR 45.0%
!! CCCTACAAAATCGGCTTGTA+AGG + Chr8:1057178-1057197 MsG0880041908.01.T01:intron 45.0%
!! GAAACATGTGCTGACTTCCT+TGG + Chr8:1057551-1057570 MsG0880041908.01.T01:CDS 45.0%
!! GAGGACTTGGTGTTTCTTCT+GGG - Chr8:1058165-1058184 None:intergenic 45.0%
ATATGTGTCATGCCAAGCCG+TGG - Chr8:1057050-1057069 None:intergenic 50.0%
CAAAGCAGCAGGAGACCTTA+AGG - Chr8:1058396-1058415 None:intergenic 50.0%
GATGTTGAGGTGGACAAGAG+AGG + Chr8:1056817-1056836 MsG0880041908.01.T01:CDS 50.0%
GCTCCCGATAGACATTGTGA+AGG - Chr8:1057269-1057288 None:intergenic 50.0%
GGCAATAGTCGGGATCCAAA+GGG - Chr8:1058123-1058142 None:intergenic 50.0%
TTGAAGATGTGTCCACGGCT+TGG + Chr8:1057035-1057054 MsG0880041908.01.T01:intron 50.0%
TTGGTGCAGCAACAGACCTT+CGG + Chr8:1058069-1058088 MsG0880041908.01.T01:CDS 50.0%
! GGGAGTACATAGAGTTCTGG+GGG - Chr8:1058145-1058164 None:intergenic 50.0%
! TTGGTGACCACTAAGTTGGC+TGG - Chr8:1058023-1058042 None:intergenic 50.0%
!! ACACTAGCAAGAGCACTTGG+TGG + Chr8:1058815-1058834 MsG0880041908.01.T01:three_prime_UTR 50.0%
!! GAATGTGGTGGATGTTGAGG+TGG + Chr8:1056807-1056826 MsG0880041908.01.T01:CDS 50.0%
!! GGAGGACTTGGTGTTTCTTC+TGG - Chr8:1058166-1058185 None:intergenic 50.0%
!! GGAGTACATAGAGTTCTGGG+GGG - Chr8:1058144-1058163 None:intergenic 50.0%
AAGAACGCAGCAATTGGCGC+TGG - Chr8:1058190-1058209 None:intergenic 55.0%
ATCTGGTAGAGGCTGGGACT+TGG + Chr8:1058514-1058533 MsG0880041908.01.T01:CDS 55.0%
GCAGCAACAGACCTTCGGAT+CGG + Chr8:1058074-1058093 MsG0880041908.01.T01:CDS 55.0%
GCAGCAGGAGACCTTAAGGT+TGG - Chr8:1058392-1058411 None:intergenic 55.0%
GGGCAATAGTCGGGATCCAA+AGG - Chr8:1058124-1058143 None:intergenic 55.0%
GGGTTCCAACCTTGTTGCCT+TGG - Chr8:1056848-1056867 None:intergenic 55.0%
TAGTCGGGATCCAAAGGGTG+CGG - Chr8:1058118-1058137 None:intergenic 55.0%
!! AGTTCTGGGGGGCAATAGTC+GGG - Chr8:1058133-1058152 None:intergenic 55.0%
!! CAGGTGCTGCTCTAGATAGC+CGG - Chr8:1057532-1057551 None:intergenic 55.0%
!! GAGTTCTGGGGGGCAATAGT+CGG - Chr8:1058134-1058153 None:intergenic 55.0%
ACGTTCCTGACCGCACCCTT+TGG + Chr8:1058105-1058124 MsG0880041908.01.T01:CDS 60.0%
GAATTTGGAGGTCGGGCCTG+AGG - Chr8:1058484-1058503 None:intergenic 60.0%
! AACGCAGCAATTGGCGCTGG+TGG - Chr8:1058187-1058206 None:intergenic 60.0%
! GGAGGGAGTATACTCGCCTC+AGG + Chr8:1058465-1058484 MsG0880041908.01.T01:CDS 60.0%
!! ATTGGCGCTGGTGGAGGACT+TGG - Chr8:1058178-1058197 None:intergenic 60.0%
! GGGATCCAAAGGGTGCGGTC+AGG - Chr8:1058113-1058132 None:intergenic 65.0%
!! GCAGCAATTGGCGCTGGTGG+AGG - Chr8:1058184-1058203 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 1056581 1058896 1056581 ID=MsG0880041908.01;Name=MsG0880041908.01
Chr8 mRNA 1056581 1058896 1056581 ID=MsG0880041908.01.T01;Parent=MsG0880041908.01;Name=MsG0880041908.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0.25|1|1|1|4|328|338
Chr8 exon 1058326 1058896 1058326 ID=MsG0880041908.01.T01:exon:39;Parent=MsG0880041908.01.T01
Chr8 exon 1057825 1058178 1057825 ID=MsG0880041908.01.T01:exon:38;Parent=MsG0880041908.01.T01
Chr8 exon 1057472 1057614 1057472 ID=MsG0880041908.01.T01:exon:37;Parent=MsG0880041908.01.T01
Chr8 exon 1056581 1056857 1056581 ID=MsG0880041908.01.T01:exon:36;Parent=MsG0880041908.01.T01
Chr8 CDS 1056581 1056857 1056581 ID=MsG0880041908.01.T01:cds;Parent=MsG0880041908.01.T01
Chr8 CDS 1057472 1057614 1057472 ID=MsG0880041908.01.T01:cds;Parent=MsG0880041908.01.T01
Chr8 CDS 1057825 1058178 1057825 ID=MsG0880041908.01.T01:cds;Parent=MsG0880041908.01.T01
Chr8 CDS 1058326 1058568 1058326 ID=MsG0880041908.01.T01:cds;Parent=MsG0880041908.01.T01
Chr8 three_prime_UTR 1058569 1058896 1058569 ID=MsG0880041908.01.T01:three_prime_utr;Parent=MsG0880041908.01.T01
Gene Sequence

>MsG0880041908.01.T01

ATGCAAAGATGGGAGTTTCTTCTTTTTGGTGGACTCATATGGATATACTTAACTGCAAGACCAGGTGTTCTTATTGGTGCCATTGATGCTTACCTTTTTGCTCCTCTTCAACTTGGTTTTGCTAATTTATCTGGAAGGAGAAACTTGAAGACTGGTGATTTTCTCGTTGGAGATAAAATCGGTGAAGGGTCATTTGTGTTGTTTATTCTGGTGTTTTGGTCTCAAAGAATGTGGTGGATGTTGAGGTGGACAAGAGAGGAAAATCCAAGGCAACAAGGTAAGGTTGGAATTCAAGGGGCTGAAGAATTTGGTGAATTGAGGAATGGTTCAATTACCGGCTATCTAGAGCAGCACCTGAAACATGTGCTGACTTCCTTGGAAGTTTTGTGGCTGATAAAACAAACTCACAGTTCACAAAAGGGAGATCGTACTCTTGCCGATTACATGAAAGAGCGCAACTTCCCTTCAAACTTAGAATCTGTCATGTTTGGACGTGTGTTGCAAGGCGTAGATTCTTCTAGACGAAATGCATTGATCATCAAGCAAATCATGCGCCAGATAATTACTTCTCTTAAGAAAATTCATGATACAGGCATTGTTCACAGAGATATAAAGCCAGCCAACTTAGTGGTCACCAAACAGGGACAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTTCGGATCGGAAAGAATTACGTTCCTGACCGCACCCTTTGGATCCCGACTATTGCCCCCCAGAACTCTATGTACTCCCAGAAGAAACACCAATTAAACAGCCCTGATCTGTTTGATACTTATTCGGCTGGGATTGTACTACTTCAAATGGCAATACCAACCTTAAGGTCTCCTGCTGCTTTGAAGAATTTTAATTTGGAAATAAAAACCTGTGGATATGATTTGAAAAAATGGAGGGAGTATACTCGCCTCAGGCCCGACCTCCAAATTCTTGATAGTGAATCTGGTAGAGGCTGGGACTTGGCAACAAAGCTTATATCTGAAAGAGGTCCCTAA

Protein sequence

>MsG0880041908.01.T01

MQRWEFLLFGGLIWIYLTARPGVLIGAIDAYLFAPLQLGFANLSGRRNLKTGDFLVGDKIGEGSFVLFILVFWSQRMWWMLRWTREENPRQQGKVGIQGAEEFGELRNGSITGYLEQHLKHVLTSLEVLWLIKQTHSSQKGDRTLADYMKERNFPSNLESVMFGRVLQGVDSSRRNALIIKQIMRQIITSLKKIHDTGIVHRDIKPANLVVTKQGQIKLIDFGAATDLRIGKNYVPDRTLWIPTIAPQNSMYSQKKHQLNSPDLFDTYSAGIVLLQMAIPTLRSPAALKNFNLEIKTCGYDLKKWREYTRLRPDLQILDSESGRGWDLATKLISERGP*