AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038263.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038263.01.T01 MTR_8g090055 92.409 303 20 1 1 303 1 300 0.0 557
MsG0780038263.01.T01 MTR_5g037310 39.552 268 136 8 13 265 10 266 3.47e-53 176
MsG0780038263.01.T01 MTR_5g037310 39.552 268 136 8 13 265 10 266 3.53e-53 176
MsG0780038263.01.T01 MTR_4g105550 28.261 276 163 10 13 265 12 275 1.33e-24 101
MsG0780038263.01.T01 MTR_4g123700 27.778 252 157 8 26 266 27 264 2.30e-21 92.4
MsG0780038263.01.T01 MTR_4g132450 27.407 270 154 11 27 272 32 283 4.06e-21 92.0
MsG0780038263.01.T01 MTR_2g023970 28.148 270 150 12 28 272 19 269 5.73e-20 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038263.01.T01 AT1G10380 38.956 249 131 6 32 265 28 270 3.25e-43 150
MsG0780038263.01.T01 AT1G10380 38.956 249 131 6 32 265 28 270 7.97e-43 149
MsG0780038263.01.T01 AT1G11915 28.674 279 158 13 7 258 1 265 4.83e-21 92.0
MsG0780038263.01.T01 AT3G17350 29.134 254 149 10 33 268 31 271 3.15e-19 85.9
MsG0780038263.01.T01 AT3G17350 28.980 245 144 9 33 260 31 262 6.20e-18 82.8
MsG0780038263.01.T01 AT5G50290 26.357 258 154 11 32 265 21 266 1.17e-15 76.3

Find 116 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAGTGGAGGAAGATATT+TGG 0.258075 7:+43014429 None:intergenic
CGGGGAACCTCGACGGCAAC+GGG 0.267401 7:-43014262 MsG0780038263.01.T01:CDS
GTGTATGAAATGGAGGTTAT+AGG 0.283646 7:+43014545 None:intergenic
CCTGCGTATGCCCGAGCTTT+GGG 0.314040 7:+43012895 None:intergenic
CCCTGCGTATGCCCGAGCTT+TGG 0.316582 7:+43012894 None:intergenic
GCTCGGGCATACGCAGGGTC+TGG 0.339031 7:-43012889 MsG0780038263.01.T01:three_prime_UTR
ATACAAGTCAAGTATCCTTT+TGG 0.355121 7:-43014671 MsG0780038263.01.T01:CDS
TTTGATGTGCATGTTATGTA+TGG 0.360995 7:+43014614 None:intergenic
CTCACAACTAGTACATTTAG+TGG 0.392056 7:+43014103 None:intergenic
ACACAAACAAATCCACTTCC+TGG 0.398611 7:+43014050 None:intergenic
ATCAAAACCAGGATTTCCTT+TGG 0.418071 7:-43013983 MsG0780038263.01.T01:CDS
GATCGTAATTAGAGCAATCA+AGG 0.418096 7:+43014003 None:intergenic
GTTATGTATGGGTTGAATAG+TGG 0.421768 7:+43014626 None:intergenic
GAATGTCTGGAGTTCCATCT+TGG 0.421862 7:-43013168 MsG0780038263.01.T01:CDS
GTTAAGTCTATGCCAAAGTT+TGG 0.422132 7:+43014461 None:intergenic
GATCCTACTCATTGGGTTTG+TGG 0.422171 7:-43014170 MsG0780038263.01.T01:CDS
TCAAAACCAGGATTTCCTTT+GGG 0.424220 7:-43013982 MsG0780038263.01.T01:CDS
TTTGTTTGTGTTTGTAAAGG+TGG 0.424363 7:-43014038 MsG0780038263.01.T01:CDS
TGTATGAAATGGAGGTTATA+GGG 0.425846 7:+43014546 None:intergenic
CCCTACCGATCCTACTCATT+GGG 0.428780 7:-43014177 MsG0780038263.01.T01:CDS
AGAGATAGCAATACACCAAA+AGG 0.431333 7:+43012754 None:intergenic
GGCAGTCAGTGCCCAAAGCT+CGG 0.436153 7:-43012906 MsG0780038263.01.T01:three_prime_UTR
CCGGGGAACCTCGACGGCAA+CGG 0.439474 7:-43014263 MsG0780038263.01.T01:CDS
TATACACAACATGTGTTAGT+AGG 0.444066 7:+43014290 None:intergenic
TTTGGCACAGGTCCTGGTTG+CGG 0.445245 7:-43014653 MsG0780038263.01.T01:CDS
CTCGGGCATACGCAGGGTCT+GGG 0.450491 7:-43012888 MsG0780038263.01.T01:three_prime_UTR
TATGAACAGTTGGGAATGTC+TGG 0.453180 7:-43013181 MsG0780038263.01.T01:intron
ACCCTACCGATCCTACTCAT+TGG 0.464490 7:-43014178 MsG0780038263.01.T01:CDS
GAGATAGCAATACACCAAAA+GGG 0.467742 7:+43012755 None:intergenic
CAGAGTCCCAAAGGAAATCC+TGG 0.467751 7:+43013976 None:intergenic
ATGCAAACCTCACCAAACTT+TGG 0.468525 7:-43014473 MsG0780038263.01.T01:CDS
TACATAACATGCACATCAAA+CGG 0.472131 7:-43014611 MsG0780038263.01.T01:CDS
TGGGAAATGATCTCACCATT+TGG 0.475530 7:-43012869 MsG0780038263.01.T01:three_prime_UTR
AAGTTGAGGAGGGTGGAAAG+AGG 0.482013 7:+43014764 None:intergenic
TAATCGGAGGATAATGCTGC+TGG 0.482178 7:-43013122 MsG0780038263.01.T01:three_prime_UTR
GTCTGGAGTTCCATCTTGGC+TGG 0.482605 7:-43013164 MsG0780038263.01.T01:CDS
GCAGTCAGTGCCCAAAGCTC+GGG 0.483669 7:-43012905 MsG0780038263.01.T01:three_prime_UTR
CCCAAAGCTCGGGCATACGC+AGG 0.486844 7:-43012895 MsG0780038263.01.T01:three_prime_UTR
AACAATACACTAGACTTCAT+AGG 0.495200 7:+43012969 None:intergenic
CACATGTTGTGTATACTCAC+CGG 0.497181 7:-43014282 MsG0780038263.01.T01:CDS
ATCAAAAGAAGTGTCACAAA+TGG 0.498238 7:+43014376 None:intergenic
TACTCATTGGGTTTGTGGCG+TGG 0.499146 7:-43014165 MsG0780038263.01.T01:CDS
GGATCATGAAGAAGTTGAGG+AGG 0.499775 7:+43014753 None:intergenic
TATTCAACATCAATATGTAA+TGG 0.500190 7:+43012700 None:intergenic
AGTAGTAGTGGTAGTGCCAT+TGG 0.501269 7:+43014791 None:intergenic
GGAGGATCATGAAGAAGTTG+AGG 0.505398 7:+43014750 None:intergenic
GAAAGAGGTGGTAGTAGTAG+TGG 0.510292 7:+43014779 None:intergenic
GTTGTGTACAATACACCAAA+TGG 0.517237 7:+43012854 None:intergenic
CAACCAGGACCTGTGCCAAA+AGG 0.520035 7:+43014656 None:intergenic
AGTGGAAGTGGTGTATGAAA+TGG 0.521135 7:+43014535 None:intergenic
GAAAATGATACCAGCCAAGA+TGG 0.521207 7:+43013154 None:intergenic
GCAAGAGAGGAGGATGAAAG+TGG 0.526113 7:+43014415 None:intergenic
CCGTTGCCGTCGAGGTTCCC+CGG 0.529751 7:+43014263 None:intergenic
AATAGTGGGGATCCGCAACC+AGG 0.530035 7:+43014641 None:intergenic
CTCTAATTACGATCAAAACC+AGG 0.530696 7:-43013994 MsG0780038263.01.T01:CDS
GGATACGCTCCTCCAGGAAG+TGG 0.534984 7:-43014062 MsG0780038263.01.T01:CDS
TACACTAGACTTCATAGGAA+TGG 0.540053 7:+43012974 None:intergenic
CATGAAGAAGTTGAGGAGGG+TGG 0.540295 7:+43014757 None:intergenic
GGATTTGTTTGTGTTTGTAA+AGG 0.540887 7:-43014041 MsG0780038263.01.T01:CDS
TGTGAGTATGAGAGTGGAAG+TGG 0.545933 7:+43014523 None:intergenic
ACTGGTGTTGAGGCTGTTGG+TGG 0.547811 7:+43014716 None:intergenic
ACATGTTGTGTATACTCACC+GGG 0.550531 7:-43014281 MsG0780038263.01.T01:CDS
GAGAGTAGTGGTGGTGTGTG+TGG 0.551922 7:-43014083 MsG0780038263.01.T01:CDS
TTGAGGAGGGTGGAAAGAGG+TGG 0.552015 7:+43014767 None:intergenic
TGCCCTCAAGTAGTCTCACT+TGG 0.552797 7:-43014329 MsG0780038263.01.T01:CDS
CATTATCCTCCGATTACACT+AGG 0.553212 7:+43013129 None:intergenic
GGCAGTGCAAGTAGACATGT+AGG 0.553764 7:+43014496 None:intergenic
TTATGTATGGGTTGAATAGT+GGG 0.557969 7:+43014627 None:intergenic
ACAAATTTATCTTTGCGTCA+AGG 0.558019 7:-43012782 MsG0780038263.01.T01:three_prime_UTR
CACACTGGTGTTGAGGCTGT+TGG 0.558660 7:+43014713 None:intergenic
TCAAGTCCCCGTTGCCGTCG+AGG 0.567153 7:+43014255 None:intergenic
GTCTATGCCAAAGTTTGGTG+AGG 0.568396 7:+43014466 None:intergenic
GGGTGGTGTGAGTATGAGAG+TGG 0.568455 7:+43014517 None:intergenic
GGAAGTGGTGTATGAAATGG+AGG 0.572115 7:+43014538 None:intergenic
GTGTGTGGATACGCTCCTCC+AGG 0.572268 7:-43014068 MsG0780038263.01.T01:CDS
ACCCAATGAGTAGGATCGGT+AGG 0.577418 7:+43014176 None:intergenic
CTGTTGGTGGAGATGCTAAG+AGG 0.583151 7:+43014729 None:intergenic
GTAATTAGAGCAATCAAGGC+TGG 0.584195 7:+43014007 None:intergenic
AGAGAGGAGGATGAAAGTGG+AGG 0.585943 7:+43014418 None:intergenic
TGATTGTAGTAGTTATACTT+CGG 0.586867 7:-43014219 MsG0780038263.01.T01:CDS
GTGGAGGAAGATATTTGGAA+TGG 0.589220 7:+43014434 None:intergenic
AAAGTTTGGTGAGGTTTGCA+TGG 0.589595 7:+43014475 None:intergenic
TACTCACCGGGGAACCTCGA+CGG 0.589903 7:-43014269 MsG0780038263.01.T01:CDS
GTCATGGCACACTGGTGTTG+AGG 0.591700 7:+43014706 None:intergenic
TTGATGTGCATGTTATGTAT+GGG 0.591875 7:+43014615 None:intergenic
TACCAAGTGAGACTACTTGA+GGG 0.596440 7:+43014327 None:intergenic
ATACCAAGTGAGACTACTTG+AGG 0.598463 7:+43014326 None:intergenic
GAGGAGATACAGAGTCCCAA+AGG 0.600882 7:+43013967 None:intergenic
GATCATGAAGAAGTTGAGGA+GGG 0.601845 7:+43014754 None:intergenic
AGATAGCAATACACCAAAAG+GGG 0.603408 7:+43012756 None:intergenic
GAGGAAACAAGCAAAGCCAA+TGG 0.604727 7:-43014807 MsG0780038263.01.T01:exon
ACAAACCCAATGAGTAGGAT+CGG 0.610699 7:+43014172 None:intergenic
CCAAAGCTCGGGCATACGCA+GGG 0.612253 7:-43012894 MsG0780038263.01.T01:three_prime_UTR
CCCAATGAGTAGGATCGGTA+GGG 0.618650 7:+43014177 None:intergenic
CTAACAGTTAAGTCATTCAG+AGG 0.631884 7:-43013081 MsG0780038263.01.T01:three_prime_UTR
ACGCCACAAACCCAATGAGT+AGG 0.632533 7:+43014167 None:intergenic
CCACATGTGTCATGGCACAC+TGG 0.636762 7:+43014698 None:intergenic
GCAGTGCAAGTAGACATGTA+GGG 0.645279 7:+43014497 None:intergenic
AAGAGTAAAGAGAAGCACAA+AGG 0.652408 7:+43014351 None:intergenic
AACGTACTGTTGTACATGGG+AGG 0.655418 7:+43013945 None:intergenic
GTACTGTTGTACATGGGAGG+AGG 0.656054 7:+43013948 None:intergenic
AATCGGAGGATAATGCTGCT+GGG 0.657349 7:-43013121 MsG0780038263.01.T01:three_prime_UTR
TTTCAGCCTAGTGTAATCGG+AGG 0.665898 7:-43013135 MsG0780038263.01.T01:exon
GTATTGAGCCACATGTGTCA+TGG 0.676021 7:+43014690 None:intergenic
ACAGTTAAGTCATTCAGAGG+AGG 0.686509 7:-43013078 MsG0780038263.01.T01:three_prime_UTR
TATGTATGGGTTGAATAGTG+GGG 0.690061 7:+43014628 None:intergenic
GTGGCATTGAAATATAGTCA+TGG 0.693317 7:-43014146 MsG0780038263.01.T01:CDS
TTGGTGGAGATGCTAAGAGG+AGG 0.695965 7:+43014732 None:intergenic
ACTAGTTGTGAGAGTAGTGG+TGG 0.700797 7:-43014092 MsG0780038263.01.T01:CDS
TGTACTAGTTGTGAGAGTAG+TGG 0.707622 7:-43014095 MsG0780038263.01.T01:CDS
GATAGCAATACACCAAAAGG+GGG 0.708242 7:+43012757 None:intergenic
GGGGAACCTCGACGGCAACG+GGG 0.708881 7:-43014261 MsG0780038263.01.T01:CDS
GTGCAAGTAGACATGTAGGG+TGG 0.711373 7:+43014500 None:intergenic
CATGTTGTGTATACTCACCG+GGG 0.745636 7:-43014280 MsG0780038263.01.T01:CDS
CCAGTGTGCCATGACACATG+TGG 0.747102 7:-43014698 MsG0780038263.01.T01:CDS
CAAACAAATCCACTTCCTGG+AGG 0.785898 7:+43014053 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACAATAAATCTATCTTT+AGG - Chr7:43014806-43014825 MsG0780038263.01.T01:exon 15.0%
!! TAACAATAAATCTATCTTTA+GGG - Chr7:43014807-43014826 MsG0780038263.01.T01:exon 15.0%
!!! TAGTGTATTGTTTTTTTTTT+TGG - Chr7:43014528-43014547 MsG0780038263.01.T01:CDS 15.0%
!!! TTCATTTTCATATATCATAT+AGG - Chr7:43013974-43013993 MsG0780038263.01.T01:CDS 15.0%
!!! TTTGTTGTTTCTTTTATTAT+TGG - Chr7:43013576-43013595 MsG0780038263.01.T01:intron 15.0%
!! AAAAAGGAAAAATAAATGGT+TGG - Chr7:43014091-43014110 MsG0780038263.01.T01:CDS 20.0%
!! AAAGTACATTCAAAGAAAAA+TGG - Chr7:43014471-43014490 MsG0780038263.01.T01:CDS 20.0%
!! CAAGAAAAAGGAAAAATAAA+TGG - Chr7:43014087-43014106 MsG0780038263.01.T01:CDS 20.0%
!! GAGTATGTATAAGTAATTAA+GGG - Chr7:43013996-43014015 MsG0780038263.01.T01:CDS 20.0%
!! TATTCAACATCAATATGTAA+TGG + Chr7:43014789-43014808 None:intergenic 20.0%
! AAAAATAAATGGTTGGACAT+TGG - Chr7:43014098-43014117 MsG0780038263.01.T01:CDS 25.0%
! AAAGAAACAACAAAAAGAGA+AGG + Chr7:43013570-43013589 None:intergenic 25.0%
! ATAATAGTTACCCATTACTT+TGG + Chr7:43014174-43014193 None:intergenic 25.0%
! GGAGTATGTATAAGTAATTA+AGG - Chr7:43013995-43014014 MsG0780038263.01.T01:CDS 25.0%
! TATTATTCTGTACACTTGAA+AGG - Chr7:43014188-43014207 MsG0780038263.01.T01:CDS 25.0%
! TCTCTGTAAAAAAAATTGCA+TGG - Chr7:43014750-43014769 MsG0780038263.01.T01:CDS 25.0%
! TGATTGTAGTAGTTATACTT+CGG - Chr7:43013267-43013286 MsG0780038263.01.T01:intron 25.0%
! TGCAACATAAAGTAAACTTA+GGG - Chr7:43013809-43013828 MsG0780038263.01.T01:intron 25.0%
! TGGTGTATTGTCAAAAAAAA+GGG - Chr7:43014559-43014578 MsG0780038263.01.T01:CDS 25.0%
! TTGCAACATAAAGTAAACTT+AGG - Chr7:43013808-43013827 MsG0780038263.01.T01:intron 25.0%
!! ATTTTCTGAGTACAAGAAAA+AGG - Chr7:43014075-43014094 MsG0780038263.01.T01:CDS 25.0%
!! GTTTCAAAAAGTTGTGATTT+TGG - Chr7:43013624-43013643 MsG0780038263.01.T01:intron 25.0%
!! TAAAGGCTTAATTACACTTT+TGG + Chr7:43013896-43013915 None:intergenic 25.0%
!! TAACTTTTGTGCATTAAAGA+AGG + Chr7:43014444-43014463 None:intergenic 25.0%
!! TCTTTGAATGTACTTTTCTA+AGG + Chr7:43014467-43014486 None:intergenic 25.0%
!!! AAATGGTTGAACTTTTTTCT+TGG + Chr7:43013096-43013115 None:intergenic 25.0%
!!! ACAACTTTTTGAAACTTAAG+GGG + Chr7:43013619-43013638 None:intergenic 25.0%
!!! ATGAGAATGTTTGAGTTTTA+AGG + Chr7:43012919-43012938 None:intergenic 25.0%
!!! CACAACTTTTTGAAACTTAA+GGG + Chr7:43013620-43013639 None:intergenic 25.0%
!!! GAAAGAGTTGTTTTTTTTAG+GGG - Chr7:43013838-43013857 MsG0780038263.01.T01:intron 25.0%
!!! GGAAAGAGTTGTTTTTTTTA+GGG - Chr7:43013837-43013856 MsG0780038263.01.T01:intron 25.0%
!!! TACTTTTTGACTCGAAATTA+GGG - Chr7:43013736-43013755 MsG0780038263.01.T01:intron 25.0%
!!! TCACAACTTTTTGAAACTTA+AGG + Chr7:43013621-43013640 None:intergenic 25.0%
!!! TGGAAAGAGTTGTTTTTTTA+GGG + Chr7:43013652-43013671 None:intergenic 25.0%
!!! TGGAAAGAGTTGTTTTTTTT+AGG - Chr7:43013836-43013855 MsG0780038263.01.T01:intron 25.0%
!!! TTACTTTTTGACTCGAAATT+AGG - Chr7:43013735-43013754 MsG0780038263.01.T01:intron 25.0%
!!! TTGGAAAGAGTTGTTTTTTT+AGG + Chr7:43013854-43013835 None:intergenic 25.0%
!!! TTTATATTGATTCTCTCTCT+TGG - Chr7:43014234-43014253 MsG0780038263.01.T01:CDS 25.0%
!!! TTTTTTTTTTGGTACAAGTC+TGG - Chr7:43014539-43014558 MsG0780038263.01.T01:CDS 25.0%
AAAAAAGACCCGAAAACTAT+GGG + Chr7:43013956-43013975 None:intergenic 30.0%
AAAAACGTACTGTTGTACAT+GGG + Chr7:43013547-43013566 None:intergenic 30.0%
AAACCAATATGCCAAAGTAA+TGG - Chr7:43014160-43014179 MsG0780038263.01.T01:CDS 30.0%
AACAATACACTAGACTTCAT+AGG + Chr7:43014520-43014539 None:intergenic 30.0%
AACCAATATGCCAAAGTAAT+GGG - Chr7:43014161-43014180 MsG0780038263.01.T01:CDS 30.0%
ACAAATTTATCTTTGCGTCA+AGG - Chr7:43014704-43014723 MsG0780038263.01.T01:CDS 30.0%
AGTCAAAAAGTAAACTTAGG+GGG + Chr7:43013728-43013747 None:intergenic 30.0%
CAACATAAAGTAAACTTAGG+GGG - Chr7:43013811-43013830 MsG0780038263.01.T01:intron 30.0%
CGAGTCAAAAAGTAAACTTA+GGG + Chr7:43013730-43013749 None:intergenic 30.0%
CTGGTGTATTGTCAAAAAAA+AGG - Chr7:43014558-43014577 MsG0780038263.01.T01:CDS 30.0%
GAAAGTAAACTTAGGAGATT+TGG + Chr7:43013672-43013691 None:intergenic 30.0%
GAGTCAAAAAGTAAACTTAG+GGG + Chr7:43013729-43013748 None:intergenic 30.0%
GCAACATAAAGTAAACTTAG+GGG - Chr7:43013810-43013829 MsG0780038263.01.T01:intron 30.0%
TACATAACATGCACATCAAA+CGG - Chr7:43012875-43012894 MsG0780038263.01.T01:three_prime_UTR 30.0%
TATACACAACATGTGTTAGT+AGG + Chr7:43013199-43013218 None:intergenic 30.0%
TCGAGTCAAAAAGTAAACTT+AGG + Chr7:43013731-43013750 None:intergenic 30.0%
TGTATGAAATGGAGGTTATA+GGG + Chr7:43012943-43012962 None:intergenic 30.0%
TTGATGTGCATGTTATGTAT+GGG + Chr7:43012874-43012893 None:intergenic 30.0%
TTGCAACAGAAAGTAAACTT+AGG + Chr7:43013680-43013699 None:intergenic 30.0%
TTTGATGTGCATGTTATGTA+TGG + Chr7:43012875-43012894 None:intergenic 30.0%
TTTGTTTGTGTTTGTAAAGG+TGG - Chr7:43013448-43013467 MsG0780038263.01.T01:intron 30.0%
! ATACAAGTCAAGTATCCTTT+TGG - Chr7:43012815-43012834 MsG0780038263.01.T01:three_prime_UTR 30.0%
! ATCACAACTTTGGGAAATTT+AGG - Chr7:43013867-43013886 MsG0780038263.01.T01:intron 30.0%
! ATTTCCCAAAGTTGTGATTT+TGG + Chr7:43013865-43013884 None:intergenic 30.0%
! GGATTTGTTTGTGTTTGTAA+AGG - Chr7:43013445-43013464 MsG0780038263.01.T01:intron 30.0%
! TCACAACTTTGGGAAATTTA+GGG - Chr7:43013868-43013887 MsG0780038263.01.T01:intron 30.0%
! TTATGTATGGGTTGAATAGT+GGG + Chr7:43012862-43012881 None:intergenic 30.0%
! TTGAAATTCCCCATAGTTTT+CGG - Chr7:43013944-43013963 MsG0780038263.01.T01:intron 30.0%
!! ACTTTTTGACTCGAAATTAG+GGG - Chr7:43013737-43013756 MsG0780038263.01.T01:intron 30.0%
!! ATCAAAAGAAGTGTCACAAA+TGG + Chr7:43013113-43013132 None:intergenic 30.0%
!!! GAAAGAGTTGTTTTTTTAGG+GGG + Chr7:43013650-43013669 None:intergenic 30.0%
!!! GGAAAGAGTTGTTTTTTTAG+GGG + Chr7:43013651-43013670 None:intergenic 30.0%
!!! TTTGAGTTTTAAGGATGAGT+TGG + Chr7:43012910-43012929 None:intergenic 30.0%
AAAAAGACCCGAAAACTATG+GGG + Chr7:43013955-43013974 None:intergenic 35.0%
AGAGATAGCAATACACCAAA+AGG + Chr7:43014735-43014754 None:intergenic 35.0%
AGATAGCAATACACCAAAAG+GGG + Chr7:43014733-43014752 None:intergenic 35.0%
ATCAAAACCAGGATTTCCTT+TGG - Chr7:43013503-43013522 MsG0780038263.01.T01:intron 35.0%
CTAACAGTTAAGTCATTCAG+AGG - Chr7:43014405-43014424 MsG0780038263.01.T01:CDS 35.0%
CTCACAACTAGTACATTTAG+TGG + Chr7:43013386-43013405 None:intergenic 35.0%
CTCTAATTACGATCAAAACC+AGG - Chr7:43013492-43013511 MsG0780038263.01.T01:intron 35.0%
CTGTTCTGTTATGAACAGTT+GGG - Chr7:43014296-43014315 MsG0780038263.01.T01:CDS 35.0%
GAAAAAAGACCCGAAAACTA+TGG + Chr7:43013957-43013976 None:intergenic 35.0%
GAAAAACGTACTGTTGTACA+TGG + Chr7:43013548-43013567 None:intergenic 35.0%
GAGATAGCAATACACCAAAA+GGG + Chr7:43014734-43014753 None:intergenic 35.0%
GATCGTAATTAGAGCAATCA+AGG + Chr7:43013486-43013505 None:intergenic 35.0%
GTGTATGAAATGGAGGTTAT+AGG + Chr7:43012944-43012963 None:intergenic 35.0%
GTGTTAGTAGGAGAAAAAAG+AGG + Chr7:43013187-43013206 None:intergenic 35.0%
GTTAAGTCTATGCCAAAGTT+TGG + Chr7:43013028-43013047 None:intergenic 35.0%
GTTGTGTACAATACACCAAA+TGG + Chr7:43014635-43014654 None:intergenic 35.0%
TACACTAGACTTCATAGGAA+TGG + Chr7:43014515-43014534 None:intergenic 35.0%
TACCCATTACTTTGGCATAT+TGG + Chr7:43014166-43014185 None:intergenic 35.0%
TCAAAACCAGGATTTCCTTT+GGG - Chr7:43013504-43013523 MsG0780038263.01.T01:intron 35.0%
TCTTGCCAAAAAATGGGATA+AGG + Chr7:43014657-43014676 None:intergenic 35.0%
TGAAAGTGGAGGAAGATATT+TGG + Chr7:43013060-43013079 None:intergenic 35.0%
! AAGAGTAAAGAGAAGCACAA+AGG + Chr7:43013138-43013157 None:intergenic 35.0%
! ACAACTTTGGGAAATTTAGG+GGG - Chr7:43013870-43013889 MsG0780038263.01.T01:intron 35.0%
! CACAACTTTGGGAAATTTAG+GGG - Chr7:43013869-43013888 MsG0780038263.01.T01:intron 35.0%
! CATTTTCAGCCTAGTGTAAT+CGG - Chr7:43014348-43014367 MsG0780038263.01.T01:CDS 35.0%
! GTGGCATTGAAATATAGTCA+TGG - Chr7:43013340-43013359 MsG0780038263.01.T01:intron 35.0%
! GTTATGTATGGGTTGAATAG+TGG + Chr7:43012863-43012882 None:intergenic 35.0%
! TATGTATGGGTTGAATAGTG+GGG + Chr7:43012861-43012880 None:intergenic 35.0%
! TGAAATTCCCCATAGTTTTC+GGG - Chr7:43013945-43013964 MsG0780038263.01.T01:intron 35.0%
!! CTTTTTGACTCGAAATTAGG+GGG - Chr7:43013738-43013757 MsG0780038263.01.T01:intron 35.0%
!!! AACTTTTTTCTTGGCAAGAG+AGG + Chr7:43013087-43013106 None:intergenic 35.0%
!!! CACAACCTTATCCCATTTTT+TGG - Chr7:43014649-43014668 MsG0780038263.01.T01:CDS 35.0%
!!! TTATCCCATTTTTTGGCAAG+AGG - Chr7:43014656-43014675 MsG0780038263.01.T01:CDS 35.0%
AACAGCCTCTTGCCAAAAAA+TGG + Chr7:43014664-43014683 None:intergenic 40.0%
ACAAACCCAATGAGTAGGAT+CGG + Chr7:43013317-43013336 None:intergenic 40.0%
ACACAAACAAATCCACTTCC+TGG + Chr7:43013439-43013458 None:intergenic 40.0%
ACAGCCTCTTGCCAAAAAAT+GGG + Chr7:43014663-43014682 None:intergenic 40.0%
ACAGTTAAGTCATTCAGAGG+AGG - Chr7:43014408-43014427 MsG0780038263.01.T01:CDS 40.0%
ACATGTTGTGTATACTCACC+GGG - Chr7:43013205-43013224 MsG0780038263.01.T01:intron 40.0%
AGTGGAAGTGGTGTATGAAA+TGG + Chr7:43012954-43012973 None:intergenic 40.0%
ATACCAAGTGAGACTACTTG+AGG + Chr7:43013163-43013182 None:intergenic 40.0%
ATGCAAACCTCACCAAACTT+TGG - Chr7:43013013-43013032 MsG0780038263.01.T01:three_prime_UTR 40.0%
CACATGTTGTGTATACTCAC+CGG - Chr7:43013204-43013223 MsG0780038263.01.T01:intron 40.0%
CATTATCCTCCGATTACACT+AGG + Chr7:43014360-43014379 None:intergenic 40.0%
CCAACTGTTCATAACAGAAC+AGG + Chr7:43014298-43014317 None:intergenic 40.0%
CCTGTTCTGTTATGAACAGT+TGG - Chr7:43014295-43014314 MsG0780038263.01.T01:CDS 40.0%
GAAAATGATACCAGCCAAGA+TGG + Chr7:43014335-43014354 None:intergenic 40.0%
GATAGCAATACACCAAAAGG+GGG + Chr7:43014732-43014751 None:intergenic 40.0%
GATCATGAAGAAGTTGAGGA+GGG + Chr7:43012735-43012754 None:intergenic 40.0%
GGGACCAAAATCACAACTTT+GGG - Chr7:43013858-43013877 MsG0780038263.01.T01:intron 40.0%
GTAATTAGAGCAATCAAGGC+TGG + Chr7:43013482-43013501 None:intergenic 40.0%
GTGGAGGAAGATATTTGGAA+TGG + Chr7:43013055-43013074 None:intergenic 40.0%
TAAAGTAAACTTAGGGGGCT+TGG - Chr7:43013816-43013835 MsG0780038263.01.T01:intron 40.0%
TACCAAGTGAGACTACTTGA+GGG + Chr7:43013162-43013181 None:intergenic 40.0%
TATGAACAGTTGGGAATGTC+TGG - Chr7:43014305-43014324 MsG0780038263.01.T01:CDS 40.0%
TGGGAAATGATCTCACCATT+TGG - Chr7:43014617-43014636 MsG0780038263.01.T01:CDS 40.0%
TGTACTAGTTGTGAGAGTAG+TGG - Chr7:43013391-43013410 MsG0780038263.01.T01:intron 40.0%
! AAAGTTTGGTGAGGTTTGCA+TGG + Chr7:43013014-43013033 None:intergenic 40.0%
!!! TTTTTTCTTGGCAAGAGAGG+AGG + Chr7:43013084-43013103 None:intergenic 40.0%
AACGTACTGTTGTACATGGG+AGG + Chr7:43013544-43013563 None:intergenic 45.0%
AATCGGAGGATAATGCTGCT+GGG - Chr7:43014365-43014384 MsG0780038263.01.T01:CDS 45.0%
ACTAGTTGTGAGAGTAGTGG+TGG - Chr7:43013394-43013413 MsG0780038263.01.T01:intron 45.0%
CAAACAAATCCACTTCCTGG+AGG + Chr7:43013436-43013455 None:intergenic 45.0%
CATGTTGTGTATACTCACCG+GGG - Chr7:43013206-43013225 MsG0780038263.01.T01:intron 45.0%
GAAAGAGGTGGTAGTAGTAG+TGG + Chr7:43012710-43012729 None:intergenic 45.0%
GATCCTACTCATTGGGTTTG+TGG - Chr7:43013316-43013335 MsG0780038263.01.T01:intron 45.0%
GCAGTGCAAGTAGACATGTA+GGG + Chr7:43012992-43013011 None:intergenic 45.0%
GCCTGCAAAGTAAACTTAGG+GGG - Chr7:43013760-43013779 MsG0780038263.01.T01:intron 45.0%
GGAAGTGGTGTATGAAATGG+AGG + Chr7:43012951-43012970 None:intergenic 45.0%
GGAGGATCATGAAGAAGTTG+AGG + Chr7:43012739-43012758 None:intergenic 45.0%
GGATCATGAAGAAGTTGAGG+AGG + Chr7:43012736-43012755 None:intergenic 45.0%
GGCCTGCAAAGTAAACTTAG+GGG - Chr7:43013759-43013778 MsG0780038263.01.T01:intron 45.0%
GGGCCTGCAAAGTAAACTTA+GGG - Chr7:43013758-43013777 MsG0780038263.01.T01:intron 45.0%
GGGGACCAAAATCACAACTT+TGG - Chr7:43013857-43013876 MsG0780038263.01.T01:intron 45.0%
GTATTGAGCCACATGTGTCA+TGG + Chr7:43012799-43012818 None:intergenic 45.0%
TAATCGGAGGATAATGCTGC+TGG - Chr7:43014364-43014383 MsG0780038263.01.T01:CDS 45.0%
TGTGAGTATGAGAGTGGAAG+TGG + Chr7:43012966-43012985 None:intergenic 45.0%
TTTCAGCCTAGTGTAATCGG+AGG - Chr7:43014351-43014370 MsG0780038263.01.T01:CDS 45.0%
! AGTAGTAGTGGTAGTGCCAT+TGG + Chr7:43012698-43012717 None:intergenic 45.0%
! GAATGTCTGGAGTTCCATCT+TGG - Chr7:43014318-43014337 MsG0780038263.01.T01:CDS 45.0%
! GTCAAGTATCCTTTTGGCAC+AGG - Chr7:43012821-43012840 MsG0780038263.01.T01:three_prime_UTR 45.0%
! GTCTATGCCAAAGTTTGGTG+AGG + Chr7:43013023-43013042 None:intergenic 45.0%
!! GTTGCAATTTTAGCCCCTCA+TGG - Chr7:43013693-43013712 MsG0780038263.01.T01:intron 45.0%
!! GTTGCAATTTTAGCCCCTCA+TGG + Chr7:43013712-43013693 None:intergenic 45.0%
!! TAATTTATTCAAAATAATAA+AGG + Chr7:43013913-43013932 None:intergenic 5.0%
AAGTTGAGGAGGGTGGAAAG+AGG + Chr7:43012725-43012744 None:intergenic 50.0%
ACCCAATGAGTAGGATCGGT+AGG + Chr7:43013313-43013332 None:intergenic 50.0%
ACCCTACCGATCCTACTCAT+TGG - Chr7:43013308-43013327 MsG0780038263.01.T01:intron 50.0%
ACGCCACAAACCCAATGAGT+AGG + Chr7:43013322-43013341 None:intergenic 50.0%
AGAGAGGAGGATGAAAGTGG+AGG + Chr7:43013071-43013090 None:intergenic 50.0%
AGGGGGCTAAAATTGCCATG+AGG - Chr7:43013777-43013796 MsG0780038263.01.T01:intron 50.0%
AGGGGGCTAAAATTGCCATG+AGG + Chr7:43013796-43013777 None:intergenic 50.0%
CAGAGTCCCAAAGGAAATCC+TGG + Chr7:43013513-43013532 None:intergenic 50.0%
CATGAAGAAGTTGAGGAGGG+TGG + Chr7:43012732-43012751 None:intergenic 50.0%
CCCAATGAGTAGGATCGGTA+GGG + Chr7:43013312-43013331 None:intergenic 50.0%
CCCTACCGATCCTACTCATT+GGG - Chr7:43013309-43013328 MsG0780038263.01.T01:intron 50.0%
GAGGAGATACAGAGTCCCAA+AGG + Chr7:43013522-43013541 None:intergenic 50.0%
GCAAGAGAGGAGGATGAAAG+TGG + Chr7:43013074-43013093 None:intergenic 50.0%
GCCCCCTAAGTTTACTTTGC+AGG + Chr7:43013764-43013783 None:intergenic 50.0%
GGCAGTGCAAGTAGACATGT+AGG + Chr7:43012993-43013012 None:intergenic 50.0%
GGGGCCTGCAAAGTAAACTT+AGG - Chr7:43013757-43013776 MsG0780038263.01.T01:intron 50.0%
GGGGCTAAAATTGCCATGAG+GGG - Chr7:43013779-43013798 MsG0780038263.01.T01:intron 50.0%
GGGGCTAAAATTGCCATGAG+GGG + Chr7:43013798-43013779 None:intergenic 50.0%
GGGGGCTAAAATTGCCATGA+GGG - Chr7:43013778-43013797 MsG0780038263.01.T01:intron 50.0%
GGGGGCTAAAATTGCCATGA+GGG + Chr7:43013797-43013778 None:intergenic 50.0%
GTACTGTTGTACATGGGAGG+AGG + Chr7:43013541-43013560 None:intergenic 50.0%
GTGCAAGTAGACATGTAGGG+TGG + Chr7:43012989-43013008 None:intergenic 50.0%
TACTCATTGGGTTTGTGGCG+TGG - Chr7:43013321-43013340 MsG0780038263.01.T01:intron 50.0%
TGCCCTCAAGTAGTCTCACT+TGG - Chr7:43013157-43013176 MsG0780038263.01.T01:CDS 50.0%
TTGGTGGAGATGCTAAGAGG+AGG + Chr7:43012757-43012776 None:intergenic 50.0%
! CTGTTGGTGGAGATGCTAAG+AGG + Chr7:43012760-43012779 None:intergenic 50.0%
! TATCCTTTTGGCACAGGTCC+TGG - Chr7:43012827-43012846 MsG0780038263.01.T01:three_prime_UTR 50.0%
CAACCAGGACCTGTGCCAAA+AGG + Chr7:43012833-43012852 None:intergenic 55.0%
CCACATGTGTCATGGCACAC+TGG + Chr7:43012791-43012810 None:intergenic 55.0%
CCAGTGTGCCATGACACATG+TGG - Chr7:43012788-43012807 MsG0780038263.01.T01:three_prime_UTR 55.0%
GGGTGGTGTGAGTATGAGAG+TGG + Chr7:43012972-43012991 None:intergenic 55.0%
TTGAGGAGGGTGGAAAGAGG+TGG + Chr7:43012722-43012741 None:intergenic 55.0%
TTTGGCACAGGTCCTGGTTG+CGG - Chr7:43012833-43012852 MsG0780038263.01.T01:three_prime_UTR 55.0%
! AATAGTGGGGATCCGCAACC+AGG + Chr7:43012848-43012867 None:intergenic 55.0%
! ACTGGTGTTGAGGCTGTTGG+TGG + Chr7:43012773-43012792 None:intergenic 55.0%
! CACACTGGTGTTGAGGCTGT+TGG + Chr7:43012776-43012795 None:intergenic 55.0%
! GAGAGTAGTGGTGGTGTGTG+TGG - Chr7:43013403-43013422 MsG0780038263.01.T01:intron 55.0%
! GTCATGGCACACTGGTGTTG+AGG + Chr7:43012783-43012802 None:intergenic 55.0%
! GTCTGGAGTTCCATCTTGGC+TGG - Chr7:43014322-43014341 MsG0780038263.01.T01:CDS 55.0%
CCAAAGCTCGGGCATACGCA+GGG - Chr7:43014592-43014611 MsG0780038263.01.T01:CDS 60.0%
CCTGCGTATGCCCGAGCTTT+GGG + Chr7:43014594-43014613 None:intergenic 60.0%
GCAGTCAGTGCCCAAAGCTC+GGG - Chr7:43014581-43014600 MsG0780038263.01.T01:CDS 60.0%
GGATACGCTCCTCCAGGAAG+TGG - Chr7:43013424-43013443 MsG0780038263.01.T01:intron 60.0%
GGCAGTCAGTGCCCAAAGCT+CGG - Chr7:43014580-43014599 MsG0780038263.01.T01:CDS 60.0%
GTGTGTGGATACGCTCCTCC+AGG - Chr7:43013418-43013437 MsG0780038263.01.T01:intron 60.0%
TACTCACCGGGGAACCTCGA+CGG - Chr7:43013217-43013236 MsG0780038263.01.T01:intron 60.0%
! TGCGTCAAGGCTCCCCCTTT+TGG - Chr7:43014717-43014736 MsG0780038263.01.T01:CDS 60.0%
CCCAAAGCTCGGGCATACGC+AGG - Chr7:43014591-43014610 MsG0780038263.01.T01:CDS 65.0%
CCCTGCGTATGCCCGAGCTT+TGG + Chr7:43014595-43014614 None:intergenic 65.0%
CTCGGGCATACGCAGGGTCT+GGG - Chr7:43014598-43014617 MsG0780038263.01.T01:CDS 65.0%
TCAAGTCCCCGTTGCCGTCG+AGG + Chr7:43013234-43013253 None:intergenic 65.0%
CCGGGGAACCTCGACGGCAA+CGG - Chr7:43013223-43013242 MsG0780038263.01.T01:intron 70.0%
CCGTTGCCGTCGAGGTTCCC+CGG + Chr7:43013226-43013245 None:intergenic 70.0%
CGGGGAACCTCGACGGCAAC+GGG - Chr7:43013224-43013243 MsG0780038263.01.T01:intron 70.0%
GCTCGGGCATACGCAGGGTC+TGG - Chr7:43014597-43014616 MsG0780038263.01.T01:CDS 70.0%
GGGGAACCTCGACGGCAACG+GGG - Chr7:43013225-43013244 MsG0780038263.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 43012681 43014827 43012681 ID=MsG0780038263.01;Name=MsG0780038263.01
Chr7 mRNA 43012681 43014827 43012681 ID=MsG0780038263.01.T01;Parent=MsG0780038263.01;Name=MsG0780038263.01.T01;_AED=0.25;_eAED=0.25;_QI=17|1|1|1|1|1|2|461|303
Chr7 exon 43012681 43013194 43012681 ID=MsG0780038263.01.T01:exon:8357;Parent=MsG0780038263.01.T01
Chr7 exon 43013952 43014827 43013952 ID=MsG0780038263.01.T01:exon:8356;Parent=MsG0780038263.01.T01
Chr7 five_prime_UTR 43014811 43014827 43014811 ID=MsG0780038263.01.T01:five_prime_utr;Parent=MsG0780038263.01.T01
Chr7 CDS 43013952 43014810 43013952 ID=MsG0780038263.01.T01:cds;Parent=MsG0780038263.01.T01
Chr7 CDS 43013142 43013194 43013142 ID=MsG0780038263.01.T01:cds;Parent=MsG0780038263.01.T01
Chr7 three_prime_UTR 43012681 43013141 43012681 ID=MsG0780038263.01.T01:three_prime_utr;Parent=MsG0780038263.01.T01
Gene Sequence

>MsG0780038263.01.T01

ATGGCACTACCACTACTACTACCACCTCTTTCCACCCTCCTCAACTTCTTCATGATCCTCCTCTTAGCATCTCCACCAACAGCCTCAACACCAGTGTGCCATGACACATGTGGCTCAATACAAGTCAAGTATCCTTTTGGCACAGGTCCTGGTTGCGGATCCCCACTATTCAACCCATACATAACATGCACATCAAACGGAACATTAGACCAACTCATCCTTAAAACTCAAACATTCTCATACCCTATAACCTCCATTTCATACACCACTTCCACTCTCATACTCACACCACCCTACATGTCTACTTGCACTGCCATGCAAACCTCACCAAACTTTGGCATAGACTTAACTGCACCATTCCAAATATCTTCCTCCACTTTCATCCTCCTCTCTTGCCAAGAAAAAAGTTCAACCATTTGTGACACTTCTTTTGATTACCTTTGTGCTTCTCTTTACTCTTGCCCTCAAGTAGTCTCACTTGGTATGCCTCTTTTTTCTCCTACTAACACATGTTGTGTATACTCACCGGGGAACCTCGACGGCAACGGGGACTTGAATCTTAGAGAGAATGATTGTAGTAGTTATACTTCGGTTGTGTCACTTGATGATAACCCTACCGATCCTACTCATTGGGTTTGTGGCGTGGCATTGAAATATAGTCATGGTGCTTTTGATAACTTTGCGACCACTAAATGTACTAGTTGTGAGAGTAGTGGTGGTGTGTGTGGATACGCTCCTCCAGGAAGTGGATTTGTTTGTGTTTGTAAAGGTGGATTTAATACCAGCCTTGATTGCTCTAATTACGATCAAAACCAGGATTTCCTTTGGGACTCTGTATCTCCTCCTCCCATGTACAACATTGGGAATGTCTGGAGTTCCATCTTGGCTGGTATCATTTTCAGCCTAGTGTAA

Protein sequence

>MsG0780038263.01.T01

MALPLLLPPLSTLLNFFMILLLASPPTASTPVCHDTCGSIQVKYPFGTGPGCGSPLFNPYITCTSNGTLDQLILKTQTFSYPITSISYTTSTLILTPPYMSTCTAMQTSPNFGIDLTAPFQISSSTFILLSCQEKSSTICDTSFDYLCASLYSCPQVVSLGMPLFSPTNTCCVYSPGNLDGNGDLNLRENDCSSYTSVVSLDDNPTDPTHWVCGVALKYSHGAFDNFATTKCTSCESSGGVCGYAPPGSGFVCVCKGGFNTSLDCSNYDQNQDFLWDSVSPPPMYNIGNVWSSILAGIIFSLV*