AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017596.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017596.01.T01 MTR_3g109932 99.120 341 3 0 1 341 1 341 0.0 688
MsG0380017596.01.T01 MTR_3g109932 99.048 315 3 0 1 315 1 315 0.0 635
MsG0380017596.01.T01 MTR_1g008280 90.058 342 33 1 1 341 1 342 0.0 576
MsG0380017596.01.T01 MTR_1g008280 87.749 351 33 2 1 341 1 351 0.0 568
MsG0380017596.01.T01 MTR_3g109932 98.770 244 3 0 1 244 1 244 1.15e-176 490
MsG0380017596.01.T01 MTR_1g008280 90.311 289 28 0 1 289 1 289 3.27e-173 483
MsG0380017596.01.T01 MTR_3g109968 99.254 134 1 0 208 341 1 134 2.01e-92 272
MsG0380017596.01.T01 MTR_1g100980 28.698 338 179 7 44 330 42 368 3.49e-28 113
MsG0380017596.01.T01 MTR_6g463340 30.928 291 167 12 54 323 141 418 1.90e-25 106
MsG0380017596.01.T01 MTR_6g463340 30.928 291 167 12 54 323 249 526 3.71e-25 106
MsG0380017596.01.T01 MTR_5g031710 90.566 53 5 0 192 244 48 100 4.81e-25 98.6
MsG0380017596.01.T01 MTR_1g116953 35.644 202 104 8 154 335 327 522 1.20e-23 102
MsG0380017596.01.T01 MTR_7g405780 35.176 199 107 9 154 331 342 539 3.12e-23 100
MsG0380017596.01.T01 MTR_7g077800 30.741 270 151 12 55 301 106 362 5.08e-23 99.0
MsG0380017596.01.T01 MTR_7g077800 30.175 285 163 12 55 316 244 515 9.33e-23 99.4
MsG0380017596.01.T01 MTR_8g030680 30.370 270 152 10 55 301 161 417 5.59e-21 93.6
MsG0380017596.01.T01 MTR_8g030680 30.370 270 152 10 55 301 247 503 7.24e-21 94.0
MsG0380017596.01.T01 MTR_7g405780 36.145 166 88 6 154 301 342 507 9.43e-21 93.2
MsG0380017596.01.T01 MTR_7g077800 29.091 220 123 10 55 254 244 450 6.83e-14 72.8
MsG0380017596.01.T01 MTR_7g405780 34.783 115 60 4 154 253 342 456 1.34e-12 68.9
MsG0380017596.01.T01 MTR_7g405780 34.821 112 58 4 154 250 342 453 1.12e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017596.01.T01 AT2G03120 83.776 339 53 1 1 339 1 337 0.0 564
MsG0380017596.01.T01 AT4G33410 28.144 334 168 8 29 301 17 339 1.89e-25 105
MsG0380017596.01.T01 AT1G63690 35.294 170 92 6 150 301 334 503 8.84e-22 96.7
MsG0380017596.01.T01 AT1G63690 34.706 170 93 6 150 301 334 503 3.11e-21 95.1
MsG0380017596.01.T01 AT1G01650 32.105 190 110 6 151 321 194 383 1.45e-20 92.0
MsG0380017596.01.T01 AT1G01650 32.105 190 110 6 151 321 194 383 1.45e-20 92.0
MsG0380017596.01.T01 AT1G01650 32.105 190 110 6 151 321 194 383 1.45e-20 92.0
MsG0380017596.01.T01 AT1G01650 32.105 190 110 6 151 321 336 525 1.50e-20 92.8
MsG0380017596.01.T01 AT2G43070 29.603 277 168 10 74 331 332 600 8.66e-20 90.9
MsG0380017596.01.T01 AT2G43070 29.603 277 168 10 74 331 267 535 9.22e-20 90.5
MsG0380017596.01.T01 AT2G43070 29.603 277 168 10 74 331 273 541 9.42e-20 90.5
MsG0380017596.01.T01 AT2G43070 29.603 277 168 10 74 331 326 594 9.43e-20 90.9
MsG0380017596.01.T01 AT1G05820 28.896 308 189 12 45 332 96 393 2.01e-19 89.0
MsG0380017596.01.T01 AT1G05820 36.471 170 86 8 154 303 337 504 2.22e-19 89.4
MsG0380017596.01.T01 AT1G05820 33.158 190 105 8 154 323 337 524 3.27e-19 89.0

Find 94 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACGGAACGAATTGCTAATT+TGG 0.197276 3:+98295229 MsG0380017596.01.T01:CDS
ATCATTTGATGCTCCAATTA+AGG 0.200782 3:+98296992 MsG0380017596.01.T01:CDS
TGCTCCTTGACTGCCCAATC+TGG 0.223726 3:+98300274 MsG0380017596.01.T01:three_prime_UTR
TATATTGTACCTGCGGTAAT+TGG 0.229404 3:+98299433 MsG0380017596.01.T01:CDS
TGTTGTGATGAACTGGTTTC+AGG 0.231809 3:+98299211 MsG0380017596.01.T01:CDS
TGACGAACCTGCAATTAATT+AGG 0.240212 3:-98295086 None:intergenic
GCTATTTAAGTTTCTATCTA+AGG 0.241091 3:+98295697 MsG0380017596.01.T01:CDS
ATTGCTAATTTGGCTTTATT+AGG 0.242512 3:+98295239 MsG0380017596.01.T01:CDS
AAAATGCACTCTTGAAATAC+TGG 0.260331 3:-98299157 None:intergenic
TGTCACATACATTGAAAATA+TGG 0.272398 3:-98295948 None:intergenic
AATACGTGCTCGCACGTAAA+TGG 0.285668 3:+98300350 MsG0380017596.01.T01:three_prime_UTR
GAGAATGGCACCAGTCTTAA+AGG 0.297917 3:-98296813 None:intergenic
GTTAAAACAACATTTAAGTT+TGG 0.310254 3:-98295414 None:intergenic
AGATCATCATTCCAATGATT+TGG 0.337619 3:-98295909 None:intergenic
AACGCTTTCTGCCAAATCAT+TGG 0.337952 3:+98295898 MsG0380017596.01.T01:CDS
GGCAGAAAGCGTTTAATAGA+TGG 0.350547 3:-98295888 None:intergenic
ACTGTTACTTTCCGAGAATT+CGG 0.352016 3:+98300150 MsG0380017596.01.T01:three_prime_UTR
GTTAGGAGTGAAGAGTGTTT+TGG 0.353312 3:+98300402 MsG0380017596.01.T01:three_prime_UTR
TTGGCTGGCAAATAACATAT+TGG 0.355338 3:+98296165 MsG0380017596.01.T01:CDS
TTCCATGGCAAACTTTCTAA+TGG 0.361171 3:+98300299 MsG0380017596.01.T01:three_prime_UTR
CCAAGTCCAAGCATTGAAAA+TGG 0.367027 3:-98297192 None:intergenic
TGCTCTGCGCAAGCATTGGC+TGG 0.369363 3:+98296150 MsG0380017596.01.T01:CDS
TTCTCACCACTCCCCTCTCT+TGG 0.370120 3:+98300324 MsG0380017596.01.T01:three_prime_UTR
CTGGAATGGTGAAGTTAAAC+AGG 0.372693 3:+98299477 MsG0380017596.01.T01:CDS
GATCGGAGAAAGATAGAATT+GGG 0.382094 3:-98295046 None:intergenic
ATGCTTGCGCAGAGCATACC+AGG 0.396831 3:-98296143 None:intergenic
TGAATCAGAAGCACCGGTAT+TGG 0.397522 3:-98300117 None:intergenic
GGGTCTTGCTTTCTGCATCC+AGG 0.398103 3:+98296186 MsG0380017596.01.T01:CDS
AGCTTAAGTATCCGAATTCT+CGG 0.398454 3:-98300161 None:intergenic
TCTTTGACCTTTGACTCTTT+CGG 0.399809 3:+98294987 MsG0380017596.01.T01:five_prime_UTR
GCTCCTTGACTGCCCAATCT+GGG 0.402116 3:+98300275 MsG0380017596.01.T01:three_prime_UTR
TTACAATTGTTGTGATGAAC+TGG 0.407335 3:+98299204 MsG0380017596.01.T01:CDS
CAATATTGACATGGTTGGTT+AGG 0.409453 3:+98300385 MsG0380017596.01.T01:three_prime_UTR
CGTTGGTGCAGTTGGTTTGA+CGG 0.413210 3:-98295472 None:intergenic
AGATCGGAGAAAGATAGAAT+TGG 0.418376 3:-98295047 None:intergenic
TCTCTTGGCTCCTTTAAGAC+TGG 0.419613 3:+98296803 MsG0380017596.01.T01:CDS
TGATGCCAAGTCTAGCAAAA+AGG 0.420156 3:+98300074 MsG0380017596.01.T01:CDS
TAAGACTGGTGCCATTCTCT+TGG 0.422084 3:+98296817 MsG0380017596.01.T01:CDS
GGAATTGAAATGCTTTCTCT+TGG 0.423273 3:+98296788 MsG0380017596.01.T01:CDS
GGTATGCTCTGCGCAAGCAT+TGG 0.428819 3:+98296146 MsG0380017596.01.T01:CDS
CAGATCGTTGCTGCAGTCCC+TGG 0.430974 3:+98296106 MsG0380017596.01.T01:CDS
TGGCTGGCAAATAACATATT+GGG 0.442504 3:+98296166 MsG0380017596.01.T01:CDS
GTGCAGTTGGTTTGACGGAT+CGG 0.468327 3:-98295467 None:intergenic
CCGTCGAGATTGAGTTTACA+AGG 0.476663 3:+98296080 MsG0380017596.01.T01:CDS
TTGCCATGGAAACCCAGATT+GGG 0.477539 3:-98300287 None:intergenic
CTGCCCAATCTGGGTTTCCA+TGG 0.478066 3:+98300284 MsG0380017596.01.T01:three_prime_UTR
AGCATTGCACTTCCAACAAA+GGG 0.481693 3:-98295659 None:intergenic
ACTCTCTTCTTGAGATGAAT+CGG 0.482413 3:-98300052 None:intergenic
AAATGCACTCTTGAAATACT+GGG 0.490097 3:-98299156 None:intergenic
TTACACAATATTGACATGGT+TGG 0.498153 3:+98300380 MsG0380017596.01.T01:three_prime_UTR
ATGGATCTAGTGTGCGAGAT+TGG 0.499831 3:-98295183 None:intergenic
ACAGGCTACTTCTTTGTACT+CGG 0.505091 3:+98295740 MsG0380017596.01.T01:CDS
GCTTGCATCACTGTGTTTGT+CGG 0.510711 3:+98295438 MsG0380017596.01.T01:CDS
TTTGCCATGGAAACCCAGAT+TGG 0.512785 3:-98300288 None:intergenic
TTAGTGAACACTGTGTTGAC+AGG 0.514738 3:+98295722 MsG0380017596.01.T01:CDS
GGAATGATGATCTCATAGTC+TGG 0.516052 3:+98295919 MsG0380017596.01.T01:CDS
CTTCACCATTCCAGATGCAA+TGG 0.516632 3:-98299468 None:intergenic
GTACTTACCGTTGGTGCAGT+TGG 0.522180 3:-98295480 None:intergenic
AGTTAAAGCATGTCCAATAC+CGG 0.527371 3:+98300104 MsG0380017596.01.T01:exon
AAAACGCATAGCATGTTCCT+TGG 0.531310 3:-98295636 None:intergenic
CTTGGTGATATTGTTATCCC+AGG 0.535420 3:+98297210 MsG0380017596.01.T01:CDS
TTTGACAACAAGCGGTGCTA+AGG 0.535421 3:-98295385 None:intergenic
TTTGCAACGCTGACCATCAC+AGG 0.536507 3:-98296969 None:intergenic
GAACTGGTTTCAGGCTGCAC+AGG 0.544980 3:+98299220 MsG0380017596.01.T01:CDS
CTTCAGTGAATCAGAAGCAC+CGG 0.548777 3:-98300123 None:intergenic
TTCACCATTCCAGATGCAAT+GGG 0.551965 3:-98299467 None:intergenic
GGATCTACTTTGACAACAAG+CGG 0.559911 3:-98295393 None:intergenic
GGCCTTGCAGAATCTGCTGT+GGG 0.560098 3:-98297171 None:intergenic
AACCATTAGAAAGTTTGCCA+TGG 0.560755 3:-98300301 None:intergenic
CGTCAAACCAACTGCACCAA+CGG 0.561582 3:+98295473 MsG0380017596.01.T01:CDS
TAGCATTGCACTTCCAACAA+AGG 0.562776 3:-98295660 None:intergenic
CTAATCACAGTCTGTTACAG+AGG 0.564128 3:-98300202 None:intergenic
TTTACTACCGAAAGAGTCAA+AGG 0.566706 3:-98294994 None:intergenic
AAACCCAGATTGGGCAGTCA+AGG 0.567728 3:-98300278 None:intergenic
AGAAAAGAATTGCAGCAGAT+CGG 0.568020 3:-98295063 None:intergenic
GCGGCCCATTGCATCTGGAA+TGG 0.576051 3:+98299463 MsG0380017596.01.T01:CDS
ACGATAAACTTTATCAAAGG+TGG 0.579958 3:-98294962 None:intergenic
GGTACAATATACAAAAGAGC+AGG 0.585695 3:-98299421 None:intergenic
TCCCCACAGCAGATTCTGCA+AGG 0.595992 3:+98297169 MsG0380017596.01.T01:CDS
TTGCGGTTTGATGTGTCTAG+AGG 0.601003 3:+98299125 MsG0380017596.01.T01:CDS
GCACGTATTGTACCAAGAGA+GGG 0.602662 3:-98300336 None:intergenic
AGCACGTATTGTACCAAGAG+AGG 0.610525 3:-98300337 None:intergenic
AGAACGATAAACTTTATCAA+AGG 0.611291 3:-98294965 None:intergenic
TGGCCTTGCAGAATCTGCTG+TGG 0.613278 3:-98297172 None:intergenic
ATCGGAGAAAGATAGAATTG+GGG 0.621997 3:-98295045 None:intergenic
TATGCAGGAGACAATGTCCA+AGG 0.637852 3:+98295619 MsG0380017596.01.T01:intron
ATTGTACCAAGAGAGGGGAG+TGG 0.668612 3:-98300330 None:intergenic
CCTTGTAAACTCAATCTCGA+CGG 0.670515 3:-98296080 None:intergenic
CACGTATTGTACCAAGAGAG+GGG 0.674490 3:-98300335 None:intergenic
AATGCACTCTTGAAATACTG+GGG 0.679873 3:-98299155 None:intergenic
GACAAACACAGTGATGCAAG+CGG 0.680075 3:-98295436 None:intergenic
TTGCTGCGAAATGAAGAACA+CGG 0.684413 3:+98295211 MsG0380017596.01.T01:exon
TCGGAGAAAGATAGAATTGG+GGG 0.695601 3:-98295044 None:intergenic
GCCTTGCAGAATCTGCTGTG+GGG 0.709703 3:-98297170 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTTAAAAACTTATAAAA+GGG - Chr3:98297714-98297733 None:intergenic 10.0%
!!! AGTTAATATTTTTTTAGTTA+CGG - Chr3:98298780-98298799 None:intergenic 10.0%
!!! GATAATTTATTTAAGATAAA+TGG - Chr3:98299030-98299049 None:intergenic 10.0%
!!! TTAAATTTTTTTTTTCGTTT+GGG + Chr3:98299271-98299290 MsG0380017596.01.T01:intron 10.0%
!!! TTTAAATTTTTTTTTTCGTT+TGG + Chr3:98299270-98299289 MsG0380017596.01.T01:intron 10.0%
!! AAAAATAATAAATGTTGCAT+TGG - Chr3:98298491-98298510 None:intergenic 15.0%
!! AATAGGTTATTATGTATAAT+TGG - Chr3:98296394-98296413 None:intergenic 15.0%
!! ATAAATTATCTACAATCAAT+TGG + Chr3:98299040-98299059 MsG0380017596.01.T01:intron 15.0%
!! ATACTAATTGAAAAAGAATA+AGG + Chr3:98297511-98297530 MsG0380017596.01.T01:intron 15.0%
!! CACAAAACATAATTAATTAT+TGG - Chr3:98296567-98296586 None:intergenic 15.0%
!! GAAGTTTAAAAACTTATAAA+AGG - Chr3:98297715-98297734 None:intergenic 15.0%
!! GAATGAAATTCATTAAATAA+GGG - Chr3:98298527-98298546 None:intergenic 15.0%
!! GTAAATAAGTCAAAATTATT+TGG - Chr3:98297370-98297389 None:intergenic 15.0%
!! TACTAATTGAAAAAGAATAA+GGG + Chr3:98297512-98297531 MsG0380017596.01.T01:intron 15.0%
!! TATACATAATAACCTATTAT+AGG + Chr3:98296396-98296415 MsG0380017596.01.T01:intron 15.0%
!! TCTAATTATGTTAATTAAAC+TGG + Chr3:98297132-98297151 MsG0380017596.01.T01:intron 15.0%
!! TGAATGAAATTCATTAAATA+AGG - Chr3:98298528-98298547 None:intergenic 15.0%
!! TTAAATTATGGTATTTAACT+TGG + Chr3:98296419-98296438 MsG0380017596.01.T01:intron 15.0%
!! TTGCAATATATAAAAGAATA+CGG - Chr3:98295568-98295587 None:intergenic 15.0%
!!! AATAAGCTTAATTTCTAAAA+AGG - Chr3:98296633-98296652 None:intergenic 15.0%
!!! ATGATTTTATAGTTTTAAGT+TGG + Chr3:98299913-98299932 MsG0380017596.01.T01:intron 15.0%
!!! ATTAATTATGTTGATTTCAA+TGG - Chr3:98298611-98298630 None:intergenic 15.0%
!!! GTTAATATTTTTTTAGTTAC+GGG - Chr3:98298779-98298798 None:intergenic 15.0%
!!! TAAATTTTTTTTTTCGTTTG+GGG + Chr3:98299272-98299291 MsG0380017596.01.T01:intron 15.0%
!!! TTTAGTTCTTAGTATAAATT+TGG + Chr3:98297294-98297313 MsG0380017596.01.T01:intron 15.0%
!! AAATTGCCAATATGAAAAAT+AGG - Chr3:98300249-98300268 None:intergenic 20.0%
!! ACATATAGATTGTAGAATAT+GGG + Chr3:98299765-98299784 MsG0380017596.01.T01:intron 20.0%
!! ACATGAGTTAATAAAAGAAA+TGG - Chr3:98296533-98296552 None:intergenic 20.0%
!! ACCATAATTTAACCTATAAT+AGG - Chr3:98296411-98296430 None:intergenic 20.0%
!! ACCTATTATAGGTTAAATTA+TGG + Chr3:98296407-98296426 MsG0380017596.01.T01:intron 20.0%
!! ATATAAAACACGTCAAAAAA+AGG - Chr3:98295822-98295841 None:intergenic 20.0%
!! ATGTAAATGGCATAAATAAA+AGG - Chr3:98296357-98296376 None:intergenic 20.0%
!! CAAATGTAAAGTTTCTTTAT+AGG + Chr3:98297615-98297634 MsG0380017596.01.T01:intron 20.0%
!! TACATATAGATTGTAGAATA+TGG + Chr3:98299764-98299783 MsG0380017596.01.T01:intron 20.0%
!! TATTCATTATGGAAAAAGTA+GGG - Chr3:98298077-98298096 None:intergenic 20.0%
!! TGCAATATATAAAAGAATAC+GGG - Chr3:98295567-98295586 None:intergenic 20.0%
!! TTATTCATTATGGAAAAAGT+AGG - Chr3:98298078-98298097 None:intergenic 20.0%
!! TTGTTCCAAATTTATGTAAA+TGG - Chr3:98296370-98296389 None:intergenic 20.0%
!! TTTAAATTCAACTTCACAAA+AGG - Chr3:98297267-98297286 None:intergenic 20.0%
!!! AAATTTTTTTTTTCGTTTGG+GGG + Chr3:98299273-98299292 MsG0380017596.01.T01:intron 20.0%
!!! AATTTTGTATTGAATTATGC+AGG + Chr3:98295604-98295623 MsG0380017596.01.T01:intron 20.0%
!!! ATTAAATAAGGGTATAGTAA+TGG - Chr3:98298516-98298535 None:intergenic 20.0%
!!! ATTTTAAGTCTTTGCTTAAA+TGG + Chr3:98298110-98298129 MsG0380017596.01.T01:intron 20.0%
!!! GTTAAAACAACATTTAAGTT+TGG - Chr3:98295417-98295436 None:intergenic 20.0%
!!! TGTAAAGTGACAATTATTTT+GGG - Chr3:98298465-98298484 None:intergenic 20.0%
!!! TTATGCCATTTACATAAATT+TGG + Chr3:98296362-98296381 MsG0380017596.01.T01:intron 20.0%
!!! TTATGTTTTGTGCATATTTT+TGG + Chr3:98296575-98296594 MsG0380017596.01.T01:intron 20.0%
!!! TTATGTTTTTTGCTACTTTT+AGG + Chr3:98296016-98296035 MsG0380017596.01.T01:intron 20.0%
!!! TTGTAAAGTGACAATTATTT+TGG - Chr3:98298466-98298485 None:intergenic 20.0%
!!! TTTTGTATATGACATTTTCT+GGG + Chr3:98296935-98296954 MsG0380017596.01.T01:CDS 20.0%
!!! TTTTTATCAGATAGTTATCA+TGG - Chr3:98297097-98297116 None:intergenic 20.0%
!!! TTTTTGTATATGACATTTTC+TGG + Chr3:98296934-98296953 MsG0380017596.01.T01:CDS 20.0%
!!! TTTTTTACACAATATTGACA+TGG + Chr3:98300376-98300395 MsG0380017596.01.T01:three_prime_UTR 20.0%
! AAAAAAACATACCAAGAGAA+TGG - Chr3:98296831-98296850 None:intergenic 25.0%
! AAACGACTATAATTTAGAGA+CGG + Chr3:98298660-98298679 MsG0380017596.01.T01:intron 25.0%
! AACCAGATGCATAAAAAATA+TGG - Chr3:98299553-98299572 None:intergenic 25.0%
! AATTGAAAAAGAATAAGGGA+AGG + Chr3:98297516-98297535 MsG0380017596.01.T01:intron 25.0%
! ACCAAGTTCAATTTAAAAGA+AGG - Chr3:98296858-98296877 None:intergenic 25.0%
! AGAACGATAAACTTTATCAA+AGG - Chr3:98294968-98294987 None:intergenic 25.0%
! AGAGAAAAAATCTCATTGTT+TGG - Chr3:98297737-98297756 None:intergenic 25.0%
! ATCAATTAATCATCCAAACA+GGG - Chr3:98297575-98297594 None:intergenic 25.0%
! ATGCTTATAGTTAAATTGAC+AGG + Chr3:98296262-98296281 MsG0380017596.01.T01:intron 25.0%
! ATTGAAAAAGAATAAGGGAA+GGG + Chr3:98297517-98297536 MsG0380017596.01.T01:intron 25.0%
! ATTGAAATTGATATGAGAAC+AGG - Chr3:98299530-98299549 None:intergenic 25.0%
! ATTTGAATCTCTAGATAATG+TGG - Chr3:98297856-98297875 None:intergenic 25.0%
! CAGTTATATTGGATTCTTAT+TGG + Chr3:98298366-98298385 MsG0380017596.01.T01:intron 25.0%
! CCACTAACTACAATTAATAA+GGG + Chr3:98298559-98298578 MsG0380017596.01.T01:intron 25.0%
! CTCTAAATTATAGTCGTTTA+AGG - Chr3:98298659-98298678 None:intergenic 25.0%
! GAAGAAATTGGTACTAATTT+AGG - Chr3:98297963-98297982 None:intergenic 25.0%
! GCTTGTATTGAAATTTGAAA+GGG + Chr3:98296487-98296506 MsG0380017596.01.T01:intron 25.0%
! TATGACATAAACACTAAAGA+GGG - Chr3:98298714-98298733 None:intergenic 25.0%
! TCCACTAACTACAATTAATA+AGG + Chr3:98298558-98298577 MsG0380017596.01.T01:intron 25.0%
! TGCTTGTATTGAAATTTGAA+AGG + Chr3:98296486-98296505 MsG0380017596.01.T01:intron 25.0%
! TGTCACATACATTGAAAATA+TGG - Chr3:98295951-98295970 None:intergenic 25.0%
! TGTTTAATTCATTCATGCAT+TGG + Chr3:98295991-98296010 MsG0380017596.01.T01:intron 25.0%
! TTATGACATAAACACTAAAG+AGG - Chr3:98298715-98298734 None:intergenic 25.0%
! TTGAAATTGATATGAGAACA+GGG - Chr3:98299529-98299548 None:intergenic 25.0%
! TTTACACTACTCATTATACT+TGG - Chr3:98299631-98299650 None:intergenic 25.0%
! TTTGAATCTCTAGATAATGT+GGG - Chr3:98297855-98297874 None:intergenic 25.0%
! TTTGGTTAAATACCTTCTAA+AGG + Chr3:98299789-98299808 MsG0380017596.01.T01:intron 25.0%
!! AGCAAAGTGTTTATTCATTA+TGG - Chr3:98298088-98298107 None:intergenic 25.0%
!! GCTATTTAAGTTTCTATCTA+AGG + Chr3:98295697-98295716 MsG0380017596.01.T01:CDS 25.0%
!! TAACGTTTTTCCCTTTTTAT+TGG + Chr3:98299383-98299402 MsG0380017596.01.T01:intron 25.0%
!! TATAAACTGCAAATTAGCTT+TGG - Chr3:98299667-98299686 None:intergenic 25.0%
!! TCCTTCTTTTAAATTGAACT+TGG + Chr3:98296854-98296873 MsG0380017596.01.T01:intron 25.0%
!! TTTACATTCACATATTTTGC+AGG + Chr3:98296905-98296924 MsG0380017596.01.T01:intron 25.0%
!!! AAAAAAATGAGGGTTCTAAA+AGG + Chr3:98297666-98297685 MsG0380017596.01.T01:intron 25.0%
!!! AAAAAATGAGGGTTCTAAAA+GGG + Chr3:98297667-98297686 MsG0380017596.01.T01:intron 25.0%
!!! AGCTTTAAAAGTTTGTTCTT+TGG - Chr3:98297798-98297817 None:intergenic 25.0%
!!! AGTGCTTTAAAATGTACTTA+AGG + Chr3:98299727-98299746 MsG0380017596.01.T01:intron 25.0%
!!! ATCCATATTTTTTATGCATC+TGG + Chr3:98299548-98299567 MsG0380017596.01.T01:intron 25.0%
!!! ATTGCTAATTTGGCTTTATT+AGG + Chr3:98295239-98295258 MsG0380017596.01.T01:CDS 25.0%
!!! GCAAAGATTTTAACCTTAAT+TGG - Chr3:98297008-98297027 None:intergenic 25.0%
!!! GTTAGTCCTATTTTTCATAT+TGG + Chr3:98300240-98300259 MsG0380017596.01.T01:three_prime_UTR 25.0%
!!! TAAATTTTTCAAACTGTGCT+GGG + Chr3:98297320-98297339 MsG0380017596.01.T01:intron 25.0%
!!! TATTTCAAGAGTGCATTTTT+AGG + Chr3:98299161-98299180 MsG0380017596.01.T01:CDS 25.0%
!!! TGACTGTATTTTTTCCAATT+AGG + Chr3:98299083-98299102 MsG0380017596.01.T01:intron 25.0%
!!! TTAAATTTTTCAAACTGTGC+TGG + Chr3:98297319-98297338 MsG0380017596.01.T01:intron 25.0%
!!! TTAAGTACATTTTAAAGCAC+TGG - Chr3:98299728-98299747 None:intergenic 25.0%
!!! TTTCCAATTAGGTATTTTTG+TGG + Chr3:98299094-98299113 MsG0380017596.01.T01:intron 25.0%
AAAAATAGACCCATAACCAA+AGG + Chr3:98298967-98298986 MsG0380017596.01.T01:intron 30.0%
AAAATAGACCCATAACCAAA+GGG + Chr3:98298968-98298987 MsG0380017596.01.T01:intron 30.0%
AAAATGCACTCTTGAAATAC+TGG - Chr3:98299160-98299179 None:intergenic 30.0%
AAATGCACTCTTGAAATACT+GGG - Chr3:98299159-98299178 None:intergenic 30.0%
AAATTTGACAGCACTATTCA+AGG + Chr3:98296446-98296465 MsG0380017596.01.T01:intron 30.0%
AACAAAACAGCTTATGTACA+TGG - Chr3:98295509-98295528 None:intergenic 30.0%
AAGAGACAATTATTGTGAGA+CGG - Chr3:98298425-98298444 None:intergenic 30.0%
AAGCTTATTCTGTAGAAAAC+AGG + Chr3:98296644-98296663 MsG0380017596.01.T01:intron 30.0%
ACAAAACAGCTTATGTACAT+GGG - Chr3:98295508-98295527 None:intergenic 30.0%
ACAAATGTTGCTGAAGTTAT+TGG + Chr3:98299886-98299905 MsG0380017596.01.T01:intron 30.0%
ACAATCAATTGGTTGTTACT+TGG + Chr3:98299051-98299070 MsG0380017596.01.T01:intron 30.0%
ACGATAAACTTTATCAAAGG+TGG - Chr3:98294965-98294984 None:intergenic 30.0%
ACTAACACAAACACAGATAT+TGG - Chr3:98298001-98298020 None:intergenic 30.0%
AGATCATCATTCCAATGATT+TGG - Chr3:98295912-98295931 None:intergenic 30.0%
ATCATTTGATGCTCCAATTA+AGG + Chr3:98296992-98297011 MsG0380017596.01.T01:CDS 30.0%
ATGCCACAAAAATACCTAAT+TGG - Chr3:98299100-98299119 None:intergenic 30.0%
CATCAATTAATCATCCAAAC+AGG - Chr3:98297576-98297595 None:intergenic 30.0%
CCCTTATTAATTGTAGTTAG+TGG - Chr3:98298562-98298581 None:intergenic 30.0%
CTGTATTTGACATCAAACTT+TGG + Chr3:98298993-98299012 MsG0380017596.01.T01:intron 30.0%
CTGTTTGGATGATTAATTGA+TGG + Chr3:98297574-98297593 MsG0380017596.01.T01:intron 30.0%
CTTTCTATTAATGCAGTTGT+TGG + Chr3:98300008-98300027 MsG0380017596.01.T01:intron 30.0%
GGAAAAATTATACTACACAC+TGG - Chr3:98299591-98299610 None:intergenic 30.0%
TACGATCAGTGAATTTGATT+TGG - Chr3:98299327-98299346 None:intergenic 30.0%
TATAAAAGGGAAGAAACAGA+GGG - Chr3:98297701-98297720 None:intergenic 30.0%
TGTGACACTGAGTATAATAT+AGG + Chr3:98295964-98295983 MsG0380017596.01.T01:intron 30.0%
TTACAATTGTTGTGATGAAC+TGG + Chr3:98299204-98299223 MsG0380017596.01.T01:CDS 30.0%
TTACACAATATTGACATGGT+TGG + Chr3:98300380-98300399 MsG0380017596.01.T01:three_prime_UTR 30.0%
TTATAAAAGGGAAGAAACAG+AGG - Chr3:98297702-98297721 None:intergenic 30.0%
TTGGAAATGTAACACAAAAC+AGG - Chr3:98299612-98299631 None:intergenic 30.0%
! AACATCATGTTTAGAGCTTA+AGG + Chr3:98299937-98299956 MsG0380017596.01.T01:intron 30.0%
! ACAGCATGACTTCAAATTTT+GGG + Chr3:98297413-98297432 MsG0380017596.01.T01:intron 30.0%
! CTTTTCTCCTAATTAATTGC+AGG + Chr3:98295079-98295098 MsG0380017596.01.T01:five_prime_UTR 30.0%
! GGTTTGAAATTAGCTAATGA+AGG + Chr3:98299699-98299718 MsG0380017596.01.T01:intron 30.0%
! TAAATACATGTTGTCGCTTA+CGG - Chr3:98298899-98298918 None:intergenic 30.0%
! TCTTTTGTATATTGTACCTG+CGG + Chr3:98299426-98299445 MsG0380017596.01.T01:CDS 30.0%
!! AACCATTTCTAGCAAATTCA+TGG - Chr3:98297450-98297469 None:intergenic 30.0%
!! ATTAGGTATTTTTGTGGCAT+TGG + Chr3:98299100-98299119 MsG0380017596.01.T01:intron 30.0%
!! TTCTTTGGATTAGCAGTATT+GGG - Chr3:98297783-98297802 None:intergenic 30.0%
!! TTTGAAAGGGTGTATGATTT+TGG + Chr3:98296500-98296519 MsG0380017596.01.T01:intron 30.0%
!!! ATTTTTGGTATTCACTTTCC+TGG + Chr3:98296590-98296609 MsG0380017596.01.T01:intron 30.0%
!!! GCATTTTTAGGATACACTTT+TGG + Chr3:98299173-98299192 MsG0380017596.01.T01:CDS 30.0%
AAAAAGAATAAGGGAAGGGA+TGG + Chr3:98297521-98297540 MsG0380017596.01.T01:intron 35.0%
AAAATCTTTGCTGAGTGCAA+TGG + Chr3:98297017-98297036 MsG0380017596.01.T01:intron 35.0%
AACCATTAGAAAGTTTGCCA+TGG - Chr3:98300304-98300323 None:intergenic 35.0%
AAGAGGGACACCAATAAAAA+GGG - Chr3:98299396-98299415 None:intergenic 35.0%
AATCATTTCTGTGATTGCAG+CGG + Chr3:98295157-98295176 MsG0380017596.01.T01:intron 35.0%
AATGCACTCTTGAAATACTG+GGG - Chr3:98299158-98299177 None:intergenic 35.0%
AATGGTCAAACTGTGATGTT+CGG + Chr3:98298128-98298147 MsG0380017596.01.T01:intron 35.0%
ACAAACACAGATATTGGACA+CGG - Chr3:98297995-98298014 None:intergenic 35.0%
ACTCTCTTCTTGAGATGAAT+CGG - Chr3:98300055-98300074 None:intergenic 35.0%
AGAAAAGAATTGCAGCAGAT+CGG - Chr3:98295066-98295085 None:intergenic 35.0%
AGATCGGAGAAAGATAGAAT+TGG - Chr3:98295050-98295069 None:intergenic 35.0%
AGATTGTAGAATATGGGCTT+TGG + Chr3:98299771-98299790 MsG0380017596.01.T01:intron 35.0%
AGCTTAAGTATCCGAATTCT+CGG - Chr3:98300164-98300183 None:intergenic 35.0%
AGGTTTGTGCGCAATTATTA+AGG - Chr3:98298639-98298658 None:intergenic 35.0%
AGTTAAAGCATGTCCAATAC+CGG + Chr3:98300104-98300123 MsG0380017596.01.T01:exon 35.0%
ATCAACAGAGTAATCTTACC+TGG - Chr3:98297231-98297250 None:intergenic 35.0%
ATCGGAGAAAGATAGAATTG+GGG - Chr3:98295048-98295067 None:intergenic 35.0%
ATTCAGGACATGAACATTTG+AGG + Chr3:98298317-98298336 MsG0380017596.01.T01:intron 35.0%
CAGTTTATACTGTATGTGTG+TGG + Chr3:98299678-98299697 MsG0380017596.01.T01:intron 35.0%
CTAGTAAATGCACTGTGTTA+TGG + Chr3:98298218-98298237 MsG0380017596.01.T01:intron 35.0%
CTGCAACAAAAGATATTGTG+CGG - Chr3:98299856-98299875 None:intergenic 35.0%
GAAGGGGAACAAAAAAATGA+GGG + Chr3:98297656-98297675 MsG0380017596.01.T01:intron 35.0%
GACTATAATTTAGAGACGGA+GGG + Chr3:98298664-98298683 MsG0380017596.01.T01:intron 35.0%
GATCGGAGAAAGATAGAATT+GGG - Chr3:98295049-98295068 None:intergenic 35.0%
GATTAATTGATGGAGCAAAG+TGG + Chr3:98297584-98297603 MsG0380017596.01.T01:intron 35.0%
GGAATTGAAATGCTTTCTCT+TGG + Chr3:98296788-98296807 MsG0380017596.01.T01:CDS 35.0%
GGGAAAAACGTTAATAGAGA+AGG - Chr3:98299376-98299395 None:intergenic 35.0%
GGGGGAAAATGATTAAATCA+GGG - Chr3:98295029-98295048 None:intergenic 35.0%
GGTACAATATACAAAAGAGC+AGG - Chr3:98299424-98299443 None:intergenic 35.0%
GTAAAAATGCCTGTTCTAAC+CGG + Chr3:98297471-98297490 MsG0380017596.01.T01:intron 35.0%
GTATTGTTCCATTTCAAACC+AGG - Chr3:98296611-98296630 None:intergenic 35.0%
GTTAGTGCTTCATAGTTCAA+AGG + Chr3:98298015-98298034 MsG0380017596.01.T01:intron 35.0%
TATATTGTACCTGCGGTAAT+TGG + Chr3:98299433-98299452 MsG0380017596.01.T01:CDS 35.0%
TCAACAGAGTAATCTTACCT+GGG - Chr3:98297230-98297249 None:intergenic 35.0%
TCATTTCGCAGCAAAAATGA+TGG - Chr3:98295205-98295224 None:intergenic 35.0%
TCTACAACCTGCAATTTGAA+GGG + Chr3:98297639-98297658 MsG0380017596.01.T01:intron 35.0%
TCTTTGACCTTTGACTCTTT+CGG + Chr3:98294987-98295006 MsG0380017596.01.T01:five_prime_UTR 35.0%
TGAAGGGGAACAAAAAAATG+AGG + Chr3:98297655-98297674 MsG0380017596.01.T01:intron 35.0%
TGAATGTAACTACCATGTGT+CGG - Chr3:98297926-98297945 None:intergenic 35.0%
TGACGAACCTGCAATTAATT+AGG - Chr3:98295089-98295108 None:intergenic 35.0%
TGGCTGGCAAATAACATATT+GGG + Chr3:98296166-98296185 MsG0380017596.01.T01:CDS 35.0%
TGGGGGAAAATGATTAAATC+AGG - Chr3:98295030-98295049 None:intergenic 35.0%
TTAGTATTACAGTTCCCCAT+AGG - Chr3:98297498-98297517 None:intergenic 35.0%
TTCCATGGCAAACTTTCTAA+TGG + Chr3:98300299-98300318 MsG0380017596.01.T01:three_prime_UTR 35.0%
TTCTACAACCTGCAATTTGA+AGG + Chr3:98297638-98297657 MsG0380017596.01.T01:intron 35.0%
TTGGCTGGCAAATAACATAT+TGG + Chr3:98296165-98296184 MsG0380017596.01.T01:CDS 35.0%
TTTACTACCGAAAGAGTCAA+AGG - Chr3:98294997-98295016 None:intergenic 35.0%
! AGGTTCGTCAAATGTGTTTT+TGG + Chr3:98295099-98295118 MsG0380017596.01.T01:intron 35.0%
! ATCATGTTTAGAGCTTAAGG+TGG + Chr3:98299940-98299959 MsG0380017596.01.T01:intron 35.0%
! CAATATTGACATGGTTGGTT+AGG + Chr3:98300385-98300404 MsG0380017596.01.T01:three_prime_UTR 35.0%
! CACAGCATGACTTCAAATTT+TGG + Chr3:98297412-98297431 MsG0380017596.01.T01:intron 35.0%
! GGAGTTACTGGTGTTAATTA+CGG - Chr3:98296751-98296770 None:intergenic 35.0%
! TATAGGTAAAGCATCAAACC+TGG - Chr3:98296207-98296226 None:intergenic 35.0%
! TTCACTTTCCTGGTTTGAAA+TGG + Chr3:98296600-98296619 MsG0380017596.01.T01:intron 35.0%
! TTCATCCTTTTTGCTAGACT+TGG - Chr3:98300082-98300101 None:intergenic 35.0%
!! ACTGTTACTTTCCGAGAATT+CGG + Chr3:98300150-98300169 MsG0380017596.01.T01:three_prime_UTR 35.0%
!! GTTCTTTGGATTAGCAGTAT+TGG - Chr3:98297784-98297803 None:intergenic 35.0%
!! TCTTTGGATTAGCAGTATTG+GGG - Chr3:98297782-98297801 None:intergenic 35.0%
!! TTTAGGATACACTTTTGGCT+TGG + Chr3:98299178-98299197 MsG0380017596.01.T01:CDS 35.0%
!!! GACTTGTGACCAGTTTTAAA+AGG + Chr3:98299828-98299847 MsG0380017596.01.T01:intron 35.0%
AAAACGCATAGCATGTTCCT+TGG - Chr3:98295639-98295658 None:intergenic 40.0%
AACGCTTTCTGCCAAATCAT+TGG + Chr3:98295898-98295917 MsG0380017596.01.T01:CDS 40.0%
AACGTTACAGATGGAGTTAC+TGG - Chr3:98296763-98296782 None:intergenic 40.0%
AAGCGGTCGTACAGTTATAT+TGG + Chr3:98298355-98298374 MsG0380017596.01.T01:intron 40.0%
AATACAGTGCCCTTTGGTTA+TGG - Chr3:98298980-98298999 None:intergenic 40.0%
AATTGATGGAGCAAAGTGGA+AGG + Chr3:98297588-98297607 MsG0380017596.01.T01:intron 40.0%
ACAGGCTACTTCTTTGTACT+CGG + Chr3:98295740-98295759 MsG0380017596.01.T01:CDS 40.0%
ACTCCATCTGTAACGTTTAC+AGG + Chr3:98296766-98296785 MsG0380017596.01.T01:intron 40.0%
AGACAATTATTGTGAGACGG+AGG - Chr3:98298422-98298441 None:intergenic 40.0%
AGCATTGCACTTCCAACAAA+GGG - Chr3:98295662-98295681 None:intergenic 40.0%
AGTGCATTTACTAGATCCAG+CGG - Chr3:98298212-98298231 None:intergenic 40.0%
ATACAGTGCCCTTTGGTTAT+GGG - Chr3:98298979-98298998 None:intergenic 40.0%
ATGTCAAATACAGTGCCCTT+TGG - Chr3:98298986-98299005 None:intergenic 40.0%
ATTCAAGGTTTAGCGGTGAT+AGG + Chr3:98296461-98296480 MsG0380017596.01.T01:intron 40.0%
ATTGATGGAGCAAAGTGGAA+GGG + Chr3:98297589-98297608 MsG0380017596.01.T01:intron 40.0%
CAAGAGGGACACCAATAAAA+AGG - Chr3:98299397-98299416 None:intergenic 40.0%
CAAGCAAAGTTGCCTTTAGA+AGG - Chr3:98299804-98299823 None:intergenic 40.0%
CACGGAACGAATTGCTAATT+TGG + Chr3:98295229-98295248 MsG0380017596.01.T01:CDS 40.0%
CAGCACTATTCAAGGTTTAG+CGG + Chr3:98296454-98296473 MsG0380017596.01.T01:intron 40.0%
CAGGTTCGTAACCATTTAGA+TGG + Chr3:98296281-98296300 MsG0380017596.01.T01:intron 40.0%
CCTTGTAAACTCAATCTCGA+CGG - Chr3:98296083-98296102 None:intergenic 40.0%
CGACTATAATTTAGAGACGG+AGG + Chr3:98298663-98298682 MsG0380017596.01.T01:intron 40.0%
CTAATCACAGTCTGTTACAG+AGG - Chr3:98300205-98300224 None:intergenic 40.0%
CTACAACCTGCAATTTGAAG+GGG + Chr3:98297640-98297659 MsG0380017596.01.T01:intron 40.0%
CTCCATCTGTAACGTTTACA+GGG + Chr3:98296767-98296786 MsG0380017596.01.T01:intron 40.0%
CTGGAATGGTGAAGTTAAAC+AGG + Chr3:98299477-98299496 MsG0380017596.01.T01:CDS 40.0%
GACAATTATTGTGAGACGGA+GGG - Chr3:98298421-98298440 None:intergenic 40.0%
GCAACAAACTATATCGTCAC+AGG - Chr3:98297833-98297852 None:intergenic 40.0%
GGAATGATGATCTCATAGTC+TGG + Chr3:98295919-98295938 MsG0380017596.01.T01:CDS 40.0%
GGATCTACTTTGACAACAAG+CGG - Chr3:98295396-98295415 None:intergenic 40.0%
GGCTGTGTAAAATAGGTGTA+AGG - Chr3:98296062-98296081 None:intergenic 40.0%
TAAAAGAATACGGGCCTGTT+CGG - Chr3:98295558-98295577 None:intergenic 40.0%
TAAATGCACTGTGTTATGGC+TGG + Chr3:98298222-98298241 MsG0380017596.01.T01:intron 40.0%
TAATCGCGTTGCCATCTAAA+TGG - Chr3:98296295-98296314 None:intergenic 40.0%
TAGATGGAGACAATGGAGAA+GGG + Chr3:98297343-98297362 MsG0380017596.01.T01:intron 40.0%
TAGCATTGCACTTCCAACAA+AGG - Chr3:98295663-98295682 None:intergenic 40.0%
TCAAATTAGCCAATCCGAAC+AGG + Chr3:98295541-98295560 MsG0380017596.01.T01:intron 40.0%
TCGCAGACAGACATGAATAT+AGG - Chr3:98296224-98296243 None:intergenic 40.0%
TCGGAGAAAGATAGAATTGG+GGG - Chr3:98295047-98295066 None:intergenic 40.0%
TGATATGAGAACAGGGCAAA+TGG - Chr3:98299522-98299541 None:intergenic 40.0%
TGATGCCAAGTCTAGCAAAA+AGG + Chr3:98300074-98300093 MsG0380017596.01.T01:CDS 40.0%
TTAGTGAAGAGACGTTGTTC+TGG + Chr3:98298051-98298070 MsG0380017596.01.T01:intron 40.0%
TTCACCATTCCAGATGCAAT+GGG - Chr3:98299470-98299489 None:intergenic 40.0%
TTCCCTGTAAACGTTACAGA+TGG - Chr3:98296772-98296791 None:intergenic 40.0%
TTGCTGCGAAATGAAGAACA+CGG + Chr3:98295211-98295230 MsG0380017596.01.T01:exon 40.0%
TTTCTCTTCCACTGTTTGCA+GGG + Chr3:98295854-98295873 MsG0380017596.01.T01:intron 40.0%
TTTGTTCCCCTTCAAATTGC+AGG - Chr3:98297649-98297668 None:intergenic 40.0%
! ACCTGCGGTAATTGGATTTT+TGG + Chr3:98299441-98299460 MsG0380017596.01.T01:CDS 40.0%
! CATTCACATATTTTGCAGGC+TGG + Chr3:98296909-98296928 MsG0380017596.01.T01:intron 40.0%
! CCATTTTCAATGCTTGGACT+TGG + Chr3:98297192-98297211 MsG0380017596.01.T01:CDS 40.0%
! CTTGGTGATATTGTTATCCC+AGG + Chr3:98297210-98297229 MsG0380017596.01.T01:CDS 40.0%
! TGTTGTGATGAACTGGTTTC+AGG + Chr3:98299211-98299230 MsG0380017596.01.T01:CDS 40.0%
! TTAGTGAACACTGTGTTGAC+AGG + Chr3:98295722-98295741 MsG0380017596.01.T01:CDS 40.0%
! TTTTCTCTTCCACTGTTTGC+AGG + Chr3:98295853-98295872 MsG0380017596.01.T01:intron 40.0%
!! ACACTCTGAAATGTTGCACA+CGG + Chr3:98298181-98298200 MsG0380017596.01.T01:intron 40.0%
!! AGGCACAAAAAAAAGTGCCA+GGG - Chr3:98296126-98296145 None:intergenic 40.0%
!! ATGAGGGTTCTAAAAGGGAA+TGG + Chr3:98297672-98297691 MsG0380017596.01.T01:intron 40.0%
!! CCAAGTCCAAGCATTGAAAA+TGG - Chr3:98297195-98297214 None:intergenic 40.0%
!! CGCCATGAATTTGCTAGAAA+TGG + Chr3:98297445-98297464 MsG0380017596.01.T01:intron 40.0%
!! CGGCGTTGATTTGAAGAAAT+TGG - Chr3:98297975-98297994 None:intergenic 40.0%
!! CTTTGGATTAGCAGTATTGG+GGG - Chr3:98297781-98297800 None:intergenic 40.0%
!! GGCAGAAAGCGTTTAATAGA+TGG - Chr3:98295891-98295910 None:intergenic 40.0%
!! TCATTTTTGTATGTTGCCGC+AGG + Chr3:98295357-98295376 MsG0380017596.01.T01:intron 40.0%
!! TGCGGTAATTGGATTTTTGG+CGG + Chr3:98299444-98299463 MsG0380017596.01.T01:CDS 40.0%
!!! GTTAGGAGTGAAGAGTGTTT+TGG + Chr3:98300402-98300421 MsG0380017596.01.T01:three_prime_UTR 40.0%
!!! TGTGCGGAACCTTTTAAAAC+TGG - Chr3:98299840-98299859 None:intergenic 40.0%
!!! TTTTTGTGGCATTGGCTTTG+CGG + Chr3:98299108-98299127 MsG0380017596.01.T01:CDS 40.0%
AAAAGAGCAGGCTGACAAGA+GGG - Chr3:98299412-98299431 None:intergenic 45.0%
AATACGTGCTCGCACGTAAA+TGG + Chr3:98300350-98300369 MsG0380017596.01.T01:three_prime_UTR 45.0%
AGCACGTATTGTACCAAGAG+AGG - Chr3:98300340-98300359 None:intergenic 45.0%
AGCTTAAGGTGGTCGAAATG+CGG + Chr3:98299951-98299970 MsG0380017596.01.T01:intron 45.0%
ATGGATCTAGTGTGCGAGAT+TGG - Chr3:98295186-98295205 None:intergenic 45.0%
ATTACAGTTCCCCATAGGAC+CGG - Chr3:98297493-98297512 None:intergenic 45.0%
CAATGTCAAACACCGACACA+TGG + Chr3:98297911-98297930 MsG0380017596.01.T01:intron 45.0%
CACGTATTGTACCAAGAGAG+GGG - Chr3:98300338-98300357 None:intergenic 45.0%
CATCCAAACAGGGAGAAGAA+GGG - Chr3:98297565-98297584 None:intergenic 45.0%
CCGTCGAGATTGAGTTTACA+AGG + Chr3:98296080-98296099 MsG0380017596.01.T01:CDS 45.0%
CTTCACCATTCCAGATGCAA+TGG - Chr3:98299471-98299490 None:intergenic 45.0%
GAATAAGGGAAGGGATGGAA+TGG + Chr3:98297526-98297545 MsG0380017596.01.T01:intron 45.0%
GACAAACACAGTGATGCAAG+CGG - Chr3:98295439-98295458 None:intergenic 45.0%
GAGAATGGCACCAGTCTTAA+AGG - Chr3:98296816-98296835 None:intergenic 45.0%
GCACGTATTGTACCAAGAGA+GGG - Chr3:98300339-98300358 None:intergenic 45.0%
GCCAAAAATCCAATTACCGC+AGG - Chr3:98299445-98299464 None:intergenic 45.0%
GCTTGCATCACTGTGTTTGT+CGG + Chr3:98295438-98295457 MsG0380017596.01.T01:CDS 45.0%
GTAGATGGAGACAATGGAGA+AGG + Chr3:98297342-98297361 MsG0380017596.01.T01:intron 45.0%
TAATGTTGCCCTGCAAACAG+TGG - Chr3:98295865-98295884 None:intergenic 45.0%
TATCCCTTCTTCTCCCTGTT+TGG + Chr3:98297559-98297578 MsG0380017596.01.T01:intron 45.0%
TATGCAGGAGACAATGTCCA+AGG + Chr3:98295619-98295638 MsG0380017596.01.T01:intron 45.0%
TCATCCAAACAGGGAGAAGA+AGG - Chr3:98297566-98297585 None:intergenic 45.0%
TCTCGACGGCTGTGTAAAAT+AGG - Chr3:98296069-98296088 None:intergenic 45.0%
TGTGAGGATTGTGGTCATTG+TGG + Chr3:98299301-98299320 MsG0380017596.01.T01:intron 45.0%
TTACACACGTGCGCTTATTC+AGG + Chr3:98298301-98298320 MsG0380017596.01.T01:intron 45.0%
TTCAAACTGTGCTGGGTAGA+TGG + Chr3:98297327-98297346 MsG0380017596.01.T01:intron 45.0%
TTGCCATGGAAACCCAGATT+GGG - Chr3:98300290-98300309 None:intergenic 45.0%
TTGCGGTTTGATGTGTCTAG+AGG + Chr3:98299125-98299144 MsG0380017596.01.T01:CDS 45.0%
TTTGCCATGGAAACCCAGAT+TGG - Chr3:98300291-98300310 None:intergenic 45.0%
! CATGTGTCGGTGTTTGACAT+TGG - Chr3:98297913-98297932 None:intergenic 45.0%
! CTTCAGTGAATCAGAAGCAC+CGG - Chr3:98300126-98300145 None:intergenic 45.0%
! GCTATGCGTTTTCCCTTTGT+TGG + Chr3:98295647-98295666 MsG0380017596.01.T01:CDS 45.0%
! GGTTTTCTTCACTCCTGTGA+TGG + Chr3:98296956-98296975 MsG0380017596.01.T01:CDS 45.0%
! TTTGACAACAAGCGGTGCTA+AGG - Chr3:98295388-98295407 None:intergenic 45.0%
!! ACATGGGAAGTACTTACCGT+TGG - Chr3:98295492-98295511 None:intergenic 45.0%
!! CAGGCACAAAAAAAAGTGCC+AGG - Chr3:98296127-98296146 None:intergenic 45.0%
!! GCAAGGCCATTTTCAATGCT+TGG + Chr3:98297186-98297205 MsG0380017596.01.T01:CDS 45.0%
!! TAAGACTGGTGCCATTCTCT+TGG + Chr3:98296817-98296836 MsG0380017596.01.T01:CDS 45.0%
!! TCTCTTGGCTCCTTTAAGAC+TGG + Chr3:98296803-98296822 MsG0380017596.01.T01:CDS 45.0%
!! TGAATCAGAAGCACCGGTAT+TGG - Chr3:98300120-98300139 None:intergenic 45.0%
!!! CTGGCACTTTTTTTTGTGCC+TGG + Chr3:98296125-98296144 MsG0380017596.01.T01:CDS 45.0%
!! TTAAAAATATAAATAATAGA+AGG - Chr3:98295139-98295158 None:intergenic 5.0%
AAACCCAGATTGGGCAGTCA+AGG - Chr3:98300281-98300300 None:intergenic 50.0%
ACTGTGATGTTCGGTTGTCG+AGG + Chr3:98298137-98298156 MsG0380017596.01.T01:intron 50.0%
AGGGAAGGGATGGAATGGAA+AGG + Chr3:98297531-98297550 MsG0380017596.01.T01:intron 50.0%
ATTGTACCAAGAGAGGGGAG+TGG - Chr3:98300333-98300352 None:intergenic 50.0%
CAAAAGAGCAGGCTGACAAG+AGG - Chr3:98299413-98299432 None:intergenic 50.0%
CATTTCTGTGATTGCAGCGG+AGG + Chr3:98295160-98295179 MsG0380017596.01.T01:intron 50.0%
CCTGTTCTAACCGGTCCTAT+GGG + Chr3:98297480-98297499 MsG0380017596.01.T01:intron 50.0%
CGAAATGCGGTATGCTTGCT+AGG + Chr3:98299964-98299983 MsG0380017596.01.T01:intron 50.0%
CGTCAAACCAACTGCACCAA+CGG + Chr3:98295473-98295492 MsG0380017596.01.T01:CDS 50.0%
CTGTTCTAACCGGTCCTATG+GGG + Chr3:98297481-98297500 MsG0380017596.01.T01:intron 50.0%
GAAGTCATGCTGTGACAGCA+AGG - Chr3:98297406-98297425 None:intergenic 50.0%
GGGGAATGTTGTGAGGATTG+TGG + Chr3:98299292-98299311 MsG0380017596.01.T01:intron 50.0%
GTACTTACCGTTGGTGCAGT+TGG - Chr3:98295483-98295502 None:intergenic 50.0%
TCGTTTGGGGGAATGTTGTG+AGG + Chr3:98299285-98299304 MsG0380017596.01.T01:intron 50.0%
TGCTGGGTAGATGGAGACAA+TGG + Chr3:98297336-98297355 MsG0380017596.01.T01:intron 50.0%
TTTGCAACGCTGACCATCAC+AGG - Chr3:98296972-98296991 None:intergenic 50.0%
! CGGTGCTAAGGTTAAACCTG+CGG - Chr3:98295376-98295395 None:intergenic 50.0%
!! CGTTGGTGCAGTTGGTTTGA+CGG - Chr3:98295475-98295494 None:intergenic 50.0%
!! GTGCAGTTGGTTTGACGGAT+CGG - Chr3:98295470-98295489 None:intergenic 50.0%
ATGCTTGCGCAGAGCATACC+AGG - Chr3:98296146-98296165 None:intergenic 55.0%
CCCATAGGACCGGTTAGAAC+AGG - Chr3:98297483-98297502 None:intergenic 55.0%
CTGCCCAATCTGGGTTTCCA+TGG + Chr3:98300284-98300303 MsG0380017596.01.T01:three_prime_UTR 55.0%
GAATACGGGCCTGTTCGGAT+TGG - Chr3:98295553-98295572 None:intergenic 55.0%
GCACTGTGTTATGGCTGGAG+AGG + Chr3:98298227-98298246 MsG0380017596.01.T01:intron 55.0%
GCCTGTTCTAACCGGTCCTA+TGG + Chr3:98297479-98297498 MsG0380017596.01.T01:intron 55.0%
GCCTTGCAGAATCTGCTGTG+GGG - Chr3:98297173-98297192 None:intergenic 55.0%
GCTCCTTGACTGCCCAATCT+GGG + Chr3:98300275-98300294 MsG0380017596.01.T01:three_prime_UTR 55.0%
GGCCTTGCAGAATCTGCTGT+GGG - Chr3:98297174-98297193 None:intergenic 55.0%
GGCTGCACAGGTGATTCATG+TGG + Chr3:98299232-98299251 MsG0380017596.01.T01:intron 55.0%
GGGTCTTGCTTTCTGCATCC+AGG + Chr3:98296186-98296205 MsG0380017596.01.T01:CDS 55.0%
GGTATGCTCTGCGCAAGCAT+TGG + Chr3:98296146-98296165 MsG0380017596.01.T01:CDS 55.0%
TCCCCACAGCAGATTCTGCA+AGG + Chr3:98297169-98297188 MsG0380017596.01.T01:CDS 55.0%
TGATCGTACACGAGTCGCTG+AGG + Chr3:98299339-98299358 MsG0380017596.01.T01:intron 55.0%
TGCTCCTTGACTGCCCAATC+TGG + Chr3:98300274-98300293 MsG0380017596.01.T01:three_prime_UTR 55.0%
TTCTCACCACTCCCCTCTCT+TGG + Chr3:98300324-98300343 MsG0380017596.01.T01:three_prime_UTR 55.0%
! GAACTGGTTTCAGGCTGCAC+AGG + Chr3:98299220-98299239 MsG0380017596.01.T01:CDS 55.0%
! TGCGGTATGCTTGCTAGGTG+TGG + Chr3:98299969-98299988 MsG0380017596.01.T01:intron 55.0%
! TGGCCTTGCAGAATCTGCTG+TGG - Chr3:98297175-98297194 None:intergenic 55.0%
! TTTTGGCGGCCCATTGCATC+TGG + Chr3:98299458-98299477 MsG0380017596.01.T01:CDS 55.0%
CAGATCGTTGCTGCAGTCCC+TGG + Chr3:98296106-98296125 MsG0380017596.01.T01:CDS 60.0%
CGTACACGAGTCGCTGAGGT+TGG + Chr3:98299343-98299362 MsG0380017596.01.T01:intron 60.0%
GCGGCCCATTGCATCTGGAA+TGG + Chr3:98299463-98299482 MsG0380017596.01.T01:CDS 60.0%
GGCTAGAGCGTGCACTCAAG+CGG + Chr3:98298338-98298357 MsG0380017596.01.T01:intron 60.0%
!! TGCTCTGCGCAAGCATTGGC+TGG + Chr3:98296150-98296169 MsG0380017596.01.T01:CDS 60.0%
GTTGCACACGGTGCAGCCGC+TGG + Chr3:98298193-98298212 MsG0380017596.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 98294951 98300434 98294951 ID=MsG0380017596.01;Name=MsG0380017596.01
Chr3 mRNA 98294951 98300434 98294951 ID=MsG0380017596.01.T01;Parent=MsG0380017596.01;Name=MsG0380017596.01.T01;_AED=0.38;_eAED=0.38;_QI=194|1|1|1|0.90|0.83|12|330|341
Chr3 exon 98294951 98295100 98294951 ID=MsG0380017596.01.T01:exon:4103;Parent=MsG0380017596.01.T01
Chr3 exon 98295177 98295260 98295177 ID=MsG0380017596.01.T01:exon:4104;Parent=MsG0380017596.01.T01
Chr3 exon 98295379 98295494 98295379 ID=MsG0380017596.01.T01:exon:4105;Parent=MsG0380017596.01.T01
Chr3 exon 98295626 98295777 98295626 ID=MsG0380017596.01.T01:exon:4106;Parent=MsG0380017596.01.T01
Chr3 exon 98295875 98295960 98295875 ID=MsG0380017596.01.T01:exon:4107;Parent=MsG0380017596.01.T01
Chr3 exon 98296080 98296207 98296080 ID=MsG0380017596.01.T01:exon:4108;Parent=MsG0380017596.01.T01
Chr3 exon 98296788 98296838 98296788 ID=MsG0380017596.01.T01:exon:4109;Parent=MsG0380017596.01.T01
Chr3 exon 98296927 98297013 98296927 ID=MsG0380017596.01.T01:exon:4110;Parent=MsG0380017596.01.T01
Chr3 exon 98297162 98297231 98297162 ID=MsG0380017596.01.T01:exon:4111;Parent=MsG0380017596.01.T01
Chr3 exon 98299105 98299241 98299105 ID=MsG0380017596.01.T01:exon:4112;Parent=MsG0380017596.01.T01
Chr3 exon 98299421 98299498 98299421 ID=MsG0380017596.01.T01:exon:4113;Parent=MsG0380017596.01.T01
Chr3 exon 98300024 98300434 98300024 ID=MsG0380017596.01.T01:exon:4114;Parent=MsG0380017596.01.T01
Chr3 five_prime_UTR 98294951 98295100 98294951 ID=MsG0380017596.01.T01:five_prime_utr;Parent=MsG0380017596.01.T01
Chr3 five_prime_UTR 98295177 98295220 98295177 ID=MsG0380017596.01.T01:five_prime_utr;Parent=MsG0380017596.01.T01
Chr3 CDS 98295221 98295260 98295221 ID=MsG0380017596.01.T01:cds;Parent=MsG0380017596.01.T01
Chr3 CDS 98295379 98295494 98295379 ID=MsG0380017596.01.T01:cds;Parent=MsG0380017596.01.T01
Chr3 CDS 98295626 98295777 98295626 ID=MsG0380017596.01.T01:cds;Parent=MsG0380017596.01.T01
Chr3 CDS 98295875 98295960 98295875 ID=MsG0380017596.01.T01:cds;Parent=MsG0380017596.01.T01
Chr3 CDS 98296080 98296207 98296080 ID=MsG0380017596.01.T01:cds;Parent=MsG0380017596.01.T01
Chr3 CDS 98296788 98296838 98296788 ID=MsG0380017596.01.T01:cds;Parent=MsG0380017596.01.T01
Chr3 CDS 98296927 98297013 98296927 ID=MsG0380017596.01.T01:cds;Parent=MsG0380017596.01.T01
Chr3 CDS 98297162 98297231 98297162 ID=MsG0380017596.01.T01:cds;Parent=MsG0380017596.01.T01
Chr3 CDS 98299105 98299241 98299105 ID=MsG0380017596.01.T01:cds;Parent=MsG0380017596.01.T01
Chr3 CDS 98299421 98299498 98299421 ID=MsG0380017596.01.T01:cds;Parent=MsG0380017596.01.T01
Chr3 CDS 98300024 98300104 98300024 ID=MsG0380017596.01.T01:cds;Parent=MsG0380017596.01.T01
Chr3 three_prime_UTR 98300105 98300434 98300105 ID=MsG0380017596.01.T01:three_prime_utr;Parent=MsG0380017596.01.T01
Gene Sequence

>MsG0380017596.01.T01

ATGAAGAACACGGAACGAATTGCTAATTTGGCTTTATTAGGTTTAACCTTAGCACCGCTTGTTGTCAAAGTAGATCCAAACTTAAATGTTGTTTTAACCGCTTGCATCACTGTGTTTGTCGGATGTTACCGATCCGTCAAACCAACTGCACCAACGGAGACAATGTCCAAGGAACATGCTATGCGTTTTCCCTTTGTTGGAAGTGCAATGCTATTATCACTTTTCTTGCTATTTAAGTTTCTATCTAAGGACTTAGTGAACACTGTGTTGACAGGCTACTTCTTTGTACTCGGCATTGTTGCACTTTCGGCAACATTATTGCCATCTATTAAACGCTTTCTGCCAAATCATTGGAATGATGATCTCATAGTCTGGCGTTTTCCATATTTTCAATCCGTCGAGATTGAGTTTACAAGGTCGCAGATCGTTGCTGCAGTCCCTGGCACTTTTTTTTGTGCCTGGTATGCTCTGCGCAAGCATTGGCTGGCAAATAACATATTGGGTCTTGCTTTCTGCATCCAGGGAATTGAAATGCTTTCTCTTGGCTCCTTTAAGACTGGTGCCATTCTCTTGGCTGGTCTTTTTGTATATGACATTTTCTGGGTTTTCTTCACTCCTGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATTAAGCTTTTGTTCCCCACAGCAGATTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGATATTGTTATCCCAGGTATTTTTGTGGCATTGGCTTTGCGGTTTGATGTGTCTAGAGGAAGACAGCCCCAGTATTTCAAGAGTGCATTTTTAGGATACACTTTTGGCTTGGTTCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGCCTGCTCTTTTGTATATTGTACCTGCGGTAATTGGATTTTTGGCGGCCCATTGCATCTGGAATGGTGAAGTTAAACAGTTGTTGGAGTTCGACGAGTCAAAGACTGCCGATTCATCTCAAGAAGAGAGTGATGCCAAGTCTAGCAAAAAGGATGAATAA
Protein sequence

>MsG0380017596.01.T01

MKNTERIANLALLGLTLAPLVVKVDPNLNVVLTACITVFVGCYRSVKPTAPTETMSKEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSATLLPSIKRFLPNHWNDDLIVWRFPYFQSVEIEFTRSQIVAAVPGTFFCAWYALRKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDIVIPGIFVALALRFDVSRGRQPQYFKSAFLGYTFGLVLTIVVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESKTADSSQEESDAKSSKKDE*