Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011106.01.T01 | XP_013459887.1 | 98.339 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 0 | 603 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011106.01.T01 | O64740 | 84.768 | 302 | 45 | 1 | 1 | 301 | 1 | 302 | 0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011106.01.T01 | A0A2Z6P822 | 97.010 | 301 | 9 | 0 | 1 | 301 | 1 | 301 | 0.0 | 603 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048889.01 | MsG0280011106.01 | 0.810730 | 9.967488e-51 | 6.055458e-48 |
| MsG0080049008.01 | MsG0280011106.01 | 0.836006 | 1.204796e-56 | 1.498632e-53 |
| MsG0180000583.01 | MsG0280011106.01 | 0.807597 | 4.677814e-50 | 2.616045e-47 |
| MsG0180000763.01 | MsG0280011106.01 | 0.862685 | 4.253329e-64 | 1.256340e-60 |
| MsG0180003238.01 | MsG0280011106.01 | 0.814779 | 1.294672e-51 | 8.767228e-49 |
| MsG0180004058.01 | MsG0280011106.01 | 0.809248 | 2.078651e-50 | 1.214296e-47 |
| MsG0180004577.01 | MsG0280011106.01 | 0.800069 | 1.713423e-48 | 7.903776e-46 |
| MsG0180005272.01 | MsG0280011106.01 | 0.830457 | 2.905557e-55 | 3.062579e-52 |
| MsG0180005474.01 | MsG0280011106.01 | -0.805862 | 1.087367e-49 | 5.816071e-47 |
| MsG0280010944.01 | MsG0280011106.01 | 0.808866 | 2.509004e-50 | 1.450746e-47 |
| MsG0280011106.01 | MsG0280011281.01 | -0.812685 | 3.744242e-51 | 2.396235e-48 |
| MsG0280011106.01 | MsG0380013272.01 | 0.801081 | 1.065182e-48 | 5.041589e-46 |
| MsG0280011106.01 | MsG0380013843.01 | 0.829457 | 5.093335e-55 | 5.215764e-52 |
| MsG0280011106.01 | MsG0380014639.01 | -0.818991 | 1.467788e-52 | 1.115749e-49 |
| MsG0280011106.01 | MsG0380015871.01 | 0.831423 | 1.683556e-55 | 1.826047e-52 |
| MsG0280011106.01 | MsG0380016034.01 | 0.809395 | 1.932757e-50 | 1.133495e-47 |
| MsG0280011106.01 | MsG0380016393.01 | 0.828067 | 1.104635e-54 | 1.086185e-51 |
| MsG0280011106.01 | MsG0380016485.01 | 0.814424 | 1.551947e-51 | 1.040976e-48 |
| MsG0280011106.01 | MsG0380016717.01 | 0.838820 | 2.291620e-57 | 3.105292e-54 |
| MsG0280011106.01 | MsG0380016927.01 | 0.809833 | 1.556006e-50 | 9.232080e-48 |
| MsG0280011106.01 | MsG0380017594.01 | 0.806296 | 8.814801e-50 | 4.767084e-47 |
| MsG0280011106.01 | MsG0380017596.01 | 0.808770 | 2.630086e-50 | 1.516845e-47 |
| MsG0280011106.01 | MsG0380017623.01 | 0.814884 | 1.227405e-51 | 8.335026e-49 |
| MsG0280011106.01 | MsG0380017695.01 | 0.817803 | 2.728095e-52 | 2.006793e-49 |
| MsG0280011106.01 | MsG0380018024.01 | 0.818535 | 1.863194e-52 | 1.398463e-49 |
| MsG0280011106.01 | MsG0480018202.01 | -0.812894 | 3.369672e-51 | 2.168336e-48 |
| MsG0280011106.01 | MsG0480018203.01 | -0.805224 | 1.480258e-49 | 7.788144e-47 |
| MsG0280011106.01 | MsG0480020411.01 | 0.825569 | 4.364275e-54 | 3.992773e-51 |
| MsG0280011106.01 | MsG0480021300.01 | 0.800633 | 1.315163e-48 | 6.154155e-46 |
| MsG0280011106.01 | MsG0480022407.01 | 0.810374 | 1.190119e-50 | 7.161549e-48 |
| MsG0280011106.01 | MsG0480022812.01 | 0.831567 | 1.551934e-55 | 1.690670e-52 |
| MsG0280011106.01 | MsG0480022923.01 | 0.827443 | 1.560077e-54 | 1.506418e-51 |
| MsG0280011106.01 | MsG0480023062.01 | 0.807258 | 5.519513e-50 | 3.059918e-47 |
| MsG0280011106.01 | MsG0480023067.01 | 0.801023 | 1.094630e-48 | 5.173515e-46 |
| MsG0280011106.01 | MsG0480023179.01 | 0.819308 | 1.243247e-52 | 9.531832e-50 |
| MsG0280011106.01 | MsG0480023697.01 | 0.828983 | 6.635727e-55 | 6.700457e-52 |
| MsG0280011106.01 | MsG0480023851.01 | -0.809556 | 1.784825e-50 | 1.051229e-47 |
| MsG0280011106.01 | MsG0480023944.01 | 0.805890 | 1.072902e-49 | 5.742564e-47 |
| MsG0280011106.01 | MsG0580024398.01 | 0.815217 | 1.035169e-51 | 7.093277e-49 |
| MsG0280011106.01 | MsG0580025620.01 | 0.802714 | 4.921887e-49 | 2.428011e-46 |
| MsG0280011106.01 | MsG0580025633.01 | 0.807786 | 4.263767e-50 | 2.396454e-47 |
| MsG0280011106.01 | MsG0580025746.01 | 0.859989 | 2.823655e-63 | 7.600954e-60 |
| MsG0280011106.01 | MsG0580026178.01 | 0.809077 | 2.261072e-50 | 1.314820e-47 |
| MsG0280011106.01 | MsG0580027797.01 | 0.804272 | 2.339329e-49 | 1.201001e-46 |
| MsG0280011106.01 | MsG0580028302.01 | 0.818257 | 2.154633e-52 | 1.604662e-49 |
| MsG0280011106.01 | MsG0680031686.01 | 0.822985 | 1.767105e-53 | 1.502266e-50 |
| MsG0280011106.01 | MsG0680035584.01 | -0.815278 | 1.003397e-51 | 6.887647e-49 |
| MsG0280011106.01 | MsG0680035602.01 | 0.822132 | 2.789745e-53 | 2.314720e-50 |
| MsG0280011106.01 | MsG0680035650.01 | 0.804880 | 1.746871e-49 | 9.111114e-47 |
| MsG0280011106.01 | MsG0780036726.01 | 0.818905 | 1.535546e-52 | 1.164430e-49 |
| MsG0280011106.01 | MsG0780036843.01 | 0.828903 | 6.940782e-55 | 6.992183e-52 |
| MsG0280011106.01 | MsG0780038305.01 | 0.811971 | 5.359478e-51 | 3.364860e-48 |
| MsG0280011106.01 | MsG0780038431.01 | 0.800420 | 1.453320e-48 | 6.764257e-46 |
| MsG0280011106.01 | MsG0780039234.01 | 0.805474 | 1.311654e-49 | 6.945747e-47 |
| MsG0280011106.01 | MsG0780039619.01 | 0.818559 | 1.840307e-52 | 1.382114e-49 |
| MsG0280011106.01 | MsG0780040323.01 | 0.842932 | 1.911674e-58 | 2.943174e-55 |
| MsG0280011106.01 | MsG0780040978.01 | 0.806869 | 6.669892e-50 | 3.660605e-47 |
| MsG0280011106.01 | MsG0780040990.01 | 0.822298 | 2.552453e-53 | 2.128004e-50 |
| MsG0280011106.01 | MsG0780040995.01 | 0.803099 | 4.097384e-49 | 2.041072e-46 |
| MsG0280011106.01 | MsG0780041135.01 | 0.807143 | 5.836833e-50 | 3.226117e-47 |
| MsG0280011106.01 | MsG0780041180.01 | 0.815299 | 9.924611e-52 | 6.816387e-49 |
| MsG0280011106.01 | MsG0780041397.01 | 0.810217 | 1.286669e-50 | 7.710440e-48 |
| MsG0280011106.01 | MsG0780041436.01 | 0.818435 | 1.963401e-52 | 1.469692e-49 |
| MsG0280011106.01 | MsG0780041439.01 | 0.804099 | 2.541853e-49 | 1.299222e-46 |
| MsG0280011106.01 | MsG0780041565.01 | 0.832617 | 8.535112e-56 | 9.590829e-53 |
| MsG0280011106.01 | MsG0780041591.01 | 0.802493 | 5.464784e-49 | 2.680623e-46 |
| MsG0280011106.01 | MsG0780041633.01 | 0.801220 | 9.978993e-49 | 4.739431e-46 |
| MsG0280011106.01 | MsG0880042312.01 | 0.826498 | 2.624226e-54 | 2.465176e-51 |
| MsG0280011106.01 | MsG0880042694.01 | 0.801367 | 9.309401e-49 | 4.437979e-46 |
| MsG0280011106.01 | MsG0880043472.01 | 0.803376 | 3.590465e-49 | 1.801363e-46 |
| MsG0280011106.01 | MsG0880044342.01 | 0.844058 | 9.563627e-59 | 1.525879e-55 |
| MsG0280011106.01 | MsG0880044356.01 | 0.806304 | 8.777177e-50 | 4.747783e-47 |
| MsG0280011106.01 | MsG0880045683.01 | 0.809408 | 1.920767e-50 | 1.126863e-47 |
| MsG0280011106.01 | MsG0880046010.01 | -0.832055 | 1.175693e-55 | 1.299334e-52 |
| MsG0280011106.01 | MsG0880046080.01 | 0.805225 | 1.479359e-49 | 7.783663e-47 |
| MsG0280011106.01 | MsG0880046390.01 | 0.817417 | 3.334064e-52 | 2.426708e-49 |
| MsG0280011106.01 | MsG0880046863.01 | 0.809953 | 1.466434e-50 | 8.728033e-48 |
| MsG0280006883.01 | MsG0280011106.01 | 0.810739 | 9.922364e-51 | 6.029531e-48 |
| MsG0280007427.01 | MsG0280011106.01 | 0.850221 | 1.953034e-60 | 3.798823e-57 |
| MsG0280007667.01 | MsG0280011106.01 | 0.822834 | 1.916585e-53 | 1.622416e-50 |
| MsG0280009167.01 | MsG0280011106.01 | 0.824003 | 1.021162e-53 | 8.933256e-51 |
| MsG0280009526.01 | MsG0280011106.01 | 0.834999 | 2.166256e-56 | 2.614320e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0880045696.01 | MsG0280011106.01 | PPI |
| MsG0280011106.01 | MsG0280006897.01 | PPI |
| MsG0280010246.01 | MsG0280011106.01 | PPI |
| MsG0480023657.01 | MsG0280011106.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011106.01.T01 | MTR_3g054090 | 98.339 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 0.0 | 603 |
| MsG0280011106.01.T01 | MTR_6g072020 | 26.433 | 314 | 194 | 9 | 20 | 301 | 18 | 326 | 1.45e-17 | 82.0 |
| MsG0280011106.01.T01 | MTR_7g104550 | 25.397 | 252 | 155 | 10 | 46 | 286 | 7 | 236 | 1.65e-12 | 67.4 |
| MsG0280011106.01.T01 | MTR_5g016370 | 24.590 | 305 | 155 | 13 | 23 | 284 | 318 | 590 | 2.91e-12 | 67.4 |
| MsG0280011106.01.T01 | MTR_4g095058 | 27.660 | 235 | 134 | 10 | 54 | 284 | 371 | 573 | 5.96e-12 | 66.2 |
| MsG0280011106.01.T01 | MTR_4g095058 | 27.660 | 235 | 134 | 10 | 54 | 284 | 369 | 571 | 6.29e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011106.01.T01 | AT2G30050 | 84.768 | 302 | 45 | 1 | 1 | 301 | 1 | 302 | 0.0 | 531 |
| MsG0280011106.01.T01 | AT3G01340 | 82.119 | 302 | 53 | 1 | 1 | 301 | 1 | 302 | 0.0 | 521 |
| MsG0280011106.01.T01 | AT3G01340 | 82.119 | 302 | 53 | 1 | 1 | 301 | 1 | 302 | 0.0 | 521 |
| MsG0280011106.01.T01 | AT4G02730 | 27.165 | 254 | 149 | 11 | 46 | 298 | 34 | 252 | 1.05e-12 | 68.2 |
| MsG0280011106.01.T01 | AT1G64350 | 25.180 | 278 | 167 | 11 | 55 | 301 | 56 | 323 | 2.74e-12 | 66.6 |
| MsG0280011106.01.T01 | AT2G26060 | 27.490 | 251 | 148 | 12 | 47 | 285 | 12 | 240 | 2.61e-11 | 63.9 |
| MsG0280011106.01.T01 | AT2G26060 | 27.016 | 248 | 149 | 8 | 4 | 240 | 14 | 240 | 8.64e-11 | 62.4 |
Find 108 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGCTTGGGCACCGAATT+TGG | 0.171644 | 2:-79651649 | MsG0280011106.01.T01:CDS |
| GAGCTTGGATCCATTCATTT+TGG | 0.222798 | 2:+79652027 | None:intergenic |
| TTGGTGTGACTTCTGTTTCT+TGG | 0.229774 | 2:-79651842 | MsG0280011106.01.T01:CDS |
| CTGGTCACCAAGGGCCTGTT+TGG | 0.241942 | 2:-79652136 | MsG0280011106.01.T01:CDS |
| ATGACGGACGCGTCATTCTT+TGG | 0.264898 | 2:-79652061 | MsG0280011106.01.T01:CDS |
| CCGGGTGCTCTTGTTGGTTC+AGG | 0.273284 | 2:-79651804 | MsG0280011106.01.T01:CDS |
| GAAACAACAATGTCACATTA+TGG | 0.309368 | 2:-79651458 | MsG0280011106.01.T01:CDS |
| GATCACACAATTAAGATAAT+TGG | 0.313304 | 2:-79652197 | MsG0280011106.01.T01:CDS |
| GCACTAGCAATAGTAGATTT+AGG | 0.318347 | 2:+79651621 | None:intergenic |
| GTCTTTGACAGGAAATATAT+TGG | 0.319441 | 2:-79651493 | MsG0280011106.01.T01:CDS |
| CACTTCAGATGCATAATGAT+TGG | 0.332563 | 2:-79651680 | MsG0280011106.01.T01:CDS |
| TGTTTCTTGGGCTCCTTCAA+TGG | 0.345050 | 2:-79651829 | MsG0280011106.01.T01:CDS |
| GTCTGTGAATTCAGTTGCTT+GGG | 0.353330 | 2:-79651982 | MsG0280011106.01.T01:CDS |
| GTTGCTTGGGCACCGAATTT+GGG | 0.355435 | 2:-79651648 | MsG0280011106.01.T01:CDS |
| TGGTGTGACTTCTGTTTCTT+GGG | 0.358030 | 2:-79651841 | MsG0280011106.01.T01:CDS |
| GAAACAGAAGTCACACCAAC+TGG | 0.367413 | 2:+79651846 | None:intergenic |
| AAGAATGACGCGTCCGTCAT+AGG | 0.368314 | 2:+79652064 | None:intergenic |
| GACCATGATACCCTCCAAAC+AGG | 0.377638 | 2:+79651513 | None:intergenic |
| ATGGCGCCGGGTGCTCTTGT+TGG | 0.389540 | 2:-79651810 | MsG0280011106.01.T01:CDS |
| TTGGCAAAGAAGGGGATCAT+TGG | 0.390865 | 2:-79651566 | MsG0280011106.01.T01:CDS |
| TGCTTGGGCGCCTCATGAGT+TGG | 0.404443 | 2:-79651967 | MsG0280011106.01.T01:CDS |
| TTGGGCTCCTTCAATGGCGC+CGG | 0.406041 | 2:-79651823 | MsG0280011106.01.T01:CDS |
| TTGGCTTGTGCTTCGTCTGA+TGG | 0.406467 | 2:-79651936 | MsG0280011106.01.T01:CDS |
| TGGTCACCAAGGGCCTGTTT+GGG | 0.409839 | 2:-79652135 | MsG0280011106.01.T01:CDS |
| GCTTGGGCGCCTCATGAGTT+GGG | 0.412397 | 2:-79651966 | MsG0280011106.01.T01:CDS |
| GCGTGGGCTCACCCTAAGTT+TGG | 0.412765 | 2:-79652107 | MsG0280011106.01.T01:CDS |
| GCCTGTTTGGGAGGTTGCGT+GGG | 0.414310 | 2:-79652123 | MsG0280011106.01.T01:CDS |
| CGTCTGTGAATTCAGTTGCT+TGG | 0.416920 | 2:-79651983 | MsG0280011106.01.T01:CDS |
| ATGATTTCAAGACCCCTGTT+TGG | 0.434543 | 2:-79651527 | MsG0280011106.01.T01:CDS |
| TGGGCTCCTTCAATGGCGCC+GGG | 0.435343 | 2:-79651822 | MsG0280011106.01.T01:CDS |
| GGCCTGTTTGGGAGGTTGCG+TGG | 0.439174 | 2:-79652124 | MsG0280011106.01.T01:CDS |
| TTATGGAAAGAAGCTGTAGA+TGG | 0.441647 | 2:-79651441 | MsG0280011106.01.T01:CDS |
| TCATGAGTTGGGTCTCTGCT+TGG | 0.444150 | 2:-79651955 | MsG0280011106.01.T01:CDS |
| ATATGGACTGTTGGCAAAGA+AGG | 0.444237 | 2:-79651576 | MsG0280011106.01.T01:CDS |
| GATTTAGGAAGTCCCAAATT+CGG | 0.447910 | 2:+79651636 | None:intergenic |
| GCCCACGCAACCTCCCAAAC+AGG | 0.450330 | 2:+79652122 | None:intergenic |
| AGAGCACCCGGCGCCATTGA+AGG | 0.456543 | 2:+79651816 | None:intergenic |
| GTGCAGAAGCTTTGCTCTGG+TGG | 0.463692 | 2:-79651768 | MsG0280011106.01.T01:CDS |
| TGTAGATGGGGAATGGCAAC+AGG | 0.465699 | 2:-79651427 | MsG0280011106.01.T01:CDS |
| TTCGTCTGATGGGAATATTT+CGG | 0.470361 | 2:-79651925 | MsG0280011106.01.T01:CDS |
| ATGGATTATGTCTTGATGAC+CGG | 0.472610 | 2:+79652268 | None:intergenic |
| TCATTATGCATCTGAAGTGC+AGG | 0.475699 | 2:+79651684 | None:intergenic |
| GCGAGAAGGGAACCAAACTT+AGG | 0.477573 | 2:+79652095 | None:intergenic |
| CCCCTGTTTGGAGGGTATCA+TGG | 0.478267 | 2:-79651515 | MsG0280011106.01.T01:CDS |
| TGGCTTGTGCTTCGTCTGAT+GGG | 0.479615 | 2:-79651935 | MsG0280011106.01.T01:CDS |
| GATGTTGCAATGGATTACTA+TGG | 0.484612 | 2:-79652245 | MsG0280011106.01.T01:CDS |
| ACTTCAGATGCATAATGATT+GGG | 0.487890 | 2:-79651679 | MsG0280011106.01.T01:CDS |
| TGGCAAAGAAGGGGATCATT+GGG | 0.491121 | 2:-79651565 | MsG0280011106.01.T01:CDS |
| CTGCAAAGGCAGATGGTGGA+TGG | 0.503412 | 2:-79651896 | MsG0280011106.01.T01:CDS |
| CCTGTGCAGAAGCTTTGCTC+TGG | 0.505097 | 2:-79651771 | MsG0280011106.01.T01:CDS |
| CAGCATCTAGCAACTTTGAC+TGG | 0.508215 | 2:-79652155 | MsG0280011106.01.T01:CDS |
| ATTGGGTTCGAGATGTTGCT+TGG | 0.510278 | 2:-79651662 | MsG0280011106.01.T01:CDS |
| CGCGTCATTCTTTGGAAGGA+GGG | 0.511398 | 2:-79652053 | MsG0280011106.01.T01:CDS |
| AATATATTGGCTGTGGCTGA+TGG | 0.512420 | 2:-79651480 | MsG0280011106.01.T01:CDS |
| TGGTTGTGATAATACTGTTA+AGG | 0.515208 | 2:-79651748 | MsG0280011106.01.T01:CDS |
| TTGGGTTCGAGATGTTGCTT+GGG | 0.517736 | 2:-79651661 | MsG0280011106.01.T01:CDS |
| CCTTCTCAGAAGGTTGAAAC+CGG | 0.519832 | 2:-79652287 | MsG0280011106.01.T01:CDS |
| TATGGAAAGAAGCTGTAGAT+GGG | 0.520145 | 2:-79651440 | MsG0280011106.01.T01:CDS |
| CAACCTCCCAAACAGGCCCT+TGG | 0.520290 | 2:+79652129 | None:intergenic |
| AGTAATCCATTGCAACATCA+TGG | 0.520730 | 2:+79652249 | None:intergenic |
| TCACCAAGGGCCTGTTTGGG+AGG | 0.524084 | 2:-79652132 | MsG0280011106.01.T01:CDS |
| AGGGTATCATGGTCTTTGAC+AGG | 0.524931 | 2:-79651504 | MsG0280011106.01.T01:CDS |
| AAGACGGTAAAGTGATCATA+TGG | 0.528476 | 2:-79651593 | MsG0280011106.01.T01:CDS |
| TATGGACTGTTGGCAAAGAA+GGG | 0.531973 | 2:-79651575 | MsG0280011106.01.T01:CDS |
| AGGAGGGTAACCAAAATGAA+TGG | 0.536407 | 2:-79652037 | MsG0280011106.01.T01:CDS |
| TAGCAATGGACAGTGGAAGA+TGG | 0.537404 | 2:-79651715 | MsG0280011106.01.T01:CDS |
| ATTTCAAGACCCCTGTTTGG+AGG | 0.539676 | 2:-79651524 | MsG0280011106.01.T01:CDS |
| CGAGAAGGGAACCAAACTTA+GGG | 0.543581 | 2:+79652096 | None:intergenic |
| GAGGCTAGCAACAGCATCAT+CGG | 0.547815 | 2:-79652219 | MsG0280011106.01.T01:CDS |
| CAGAAACATGCCTTCTCAGA+AGG | 0.548126 | 2:-79652297 | None:intergenic |
| GTATTTACTGCAAAGGCAGA+TGG | 0.549821 | 2:-79651903 | MsG0280011106.01.T01:CDS |
| GACAGGAAATATATTGGCTG+TGG | 0.552846 | 2:-79651487 | MsG0280011106.01.T01:CDS |
| GCTCATCAAAGACATGAGCT+TGG | 0.554760 | 2:+79652012 | None:intergenic |
| CATAGGAACATGAAGCGAGA+AGG | 0.556637 | 2:+79652081 | None:intergenic |
| AGGGGATCATTGGGAAGGCA+AGG | 0.557835 | 2:-79651556 | MsG0280011106.01.T01:CDS |
| CAATGGATTACTATGGAAAG+AGG | 0.559724 | 2:-79652238 | MsG0280011106.01.T01:CDS |
| CATAATCCATGATGTTGCAA+TGG | 0.560125 | 2:-79652255 | MsG0280011106.01.T01:CDS |
| CTCGCTTCATGTTCCTATGA+CGG | 0.561648 | 2:-79652077 | MsG0280011106.01.T01:CDS |
| CCGGTTTCAACCTTCTGAGA+AGG | 0.569075 | 2:+79652287 | None:intergenic |
| TTTCAAGACCCCTGTTTGGA+GGG | 0.570292 | 2:-79651523 | MsG0280011106.01.T01:CDS |
| AAAGTGATCATATGGACTGT+TGG | 0.571303 | 2:-79651585 | MsG0280011106.01.T01:CDS |
| CGGACGCGTCATTCTTTGGA+AGG | 0.574371 | 2:-79652057 | MsG0280011106.01.T01:CDS |
| TGCAAAGGCAGATGGTGGAT+GGG | 0.576134 | 2:-79651895 | MsG0280011106.01.T01:CDS |
| TATTTCGGTATTTACTGCAA+AGG | 0.580846 | 2:-79651910 | MsG0280011106.01.T01:CDS |
| ACGCGTCATTCTTTGGAAGG+AGG | 0.581061 | 2:-79652054 | MsG0280011106.01.T01:CDS |
| CCAGAGCAAAGCTTCTGCAC+AGG | 0.586753 | 2:+79651771 | None:intergenic |
| ACCATGATACCCTCCAAACA+GGG | 0.587238 | 2:+79651514 | None:intergenic |
| ATGGTGGATGGGACACCTCA+AGG | 0.588008 | 2:-79651884 | MsG0280011106.01.T01:CDS |
| ATTGCTAGTGCGTCGCAAGA+CGG | 0.588884 | 2:-79651609 | MsG0280011106.01.T01:CDS |
| AAGAAGCTGTAGATGGGGAA+TGG | 0.590067 | 2:-79651434 | MsG0280011106.01.T01:CDS |
| ATAGGAACATGAAGCGAGAA+GGG | 0.592233 | 2:+79652082 | None:intergenic |
| CCTGAACCAACAAGAGCACC+CGG | 0.595135 | 2:+79651804 | None:intergenic |
| AAGCAGAGACCCAACTCATG+AGG | 0.602443 | 2:+79651957 | None:intergenic |
| TTTACTGCAAAGGCAGATGG+TGG | 0.615017 | 2:-79651900 | MsG0280011106.01.T01:CDS |
| CATTATGCATCTGAAGTGCA+GGG | 0.623511 | 2:+79651685 | None:intergenic |
| ATTGATCAAGCTCACCCAGT+TGG | 0.626929 | 2:-79651861 | MsG0280011106.01.T01:CDS |
| CAACTTTGACTGGTCACCAA+GGG | 0.628577 | 2:-79652145 | MsG0280011106.01.T01:CDS |
| ATGGAAAGAAGCTGTAGATG+GGG | 0.635633 | 2:-79651439 | MsG0280011106.01.T01:CDS |
| ATGGACTGTTGGCAAAGAAG+GGG | 0.637383 | 2:-79651574 | MsG0280011106.01.T01:CDS |
| AAACAGAAGTCACACCAACT+GGG | 0.643078 | 2:+79651847 | None:intergenic |
| GCAACTTTGACTGGTCACCA+AGG | 0.656777 | 2:-79652146 | MsG0280011106.01.T01:CDS |
| AAGGTGTGGAAGCTTAGCAA+TGG | 0.658169 | 2:-79651729 | MsG0280011106.01.T01:CDS |
| GTGAGCTTGATCAATCCTTG+AGG | 0.660407 | 2:+79651869 | None:intergenic |
| AAAGAAGGGGATCATTGGGA+AGG | 0.667803 | 2:-79651561 | MsG0280011106.01.T01:CDS |
| GGAAGCTTAGCAATGGACAG+TGG | 0.684704 | 2:-79651722 | MsG0280011106.01.T01:CDS |
| ATGGCAACAGGTGACAACAG+TGG | 0.686621 | 2:-79651415 | MsG0280011106.01.T01:CDS |
| GTGATAATACTGTTAAGGTG+TGG | 0.686828 | 2:-79651743 | MsG0280011106.01.T01:CDS |
| CCATGATACCCTCCAAACAG+GGG | 0.724647 | 2:+79651515 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GATCACACAATTAAGATAAT+TGG | - | Chr2:79651500-79651519 | MsG0280011106.01.T01:CDS | 25.0% |
| ACTTCAGATGCATAATGATT+GGG | - | Chr2:79652018-79652037 | MsG0280011106.01.T01:CDS | 30.0% | |
| GAAACAACAATGTCACATTA+TGG | - | Chr2:79652239-79652258 | MsG0280011106.01.T01:CDS | 30.0% | |
| GTCTTTGACAGGAAATATAT+TGG | - | Chr2:79652204-79652223 | MsG0280011106.01.T01:CDS | 30.0% | |
| TATTTCGGTATTTACTGCAA+AGG | - | Chr2:79651787-79651806 | MsG0280011106.01.T01:CDS | 30.0% | |
| TGGTTGTGATAATACTGTTA+AGG | - | Chr2:79651949-79651968 | MsG0280011106.01.T01:CDS | 30.0% | |
| AAGACGGTAAAGTGATCATA+TGG | - | Chr2:79652104-79652123 | MsG0280011106.01.T01:CDS | 35.0% | |
| AGTAATCCATTGCAACATCA+TGG | + | Chr2:79651451-79651470 | None:intergenic | 35.0% | |
| CACTTCAGATGCATAATGAT+TGG | - | Chr2:79652017-79652036 | MsG0280011106.01.T01:CDS | 35.0% | |
| CATAATCCATGATGTTGCAA+TGG | - | Chr2:79651442-79651461 | MsG0280011106.01.T01:CDS | 35.0% | |
| GATTTAGGAAGTCCCAAATT+CGG | + | Chr2:79652064-79652083 | None:intergenic | 35.0% | |
| GCACTAGCAATAGTAGATTT+AGG | + | Chr2:79652079-79652098 | None:intergenic | 35.0% | |
| GTGATAATACTGTTAAGGTG+TGG | - | Chr2:79651954-79651973 | MsG0280011106.01.T01:CDS | 35.0% | |
| TATGGAAAGAAGCTGTAGAT+GGG | - | Chr2:79652257-79652276 | MsG0280011106.01.T01:CDS | 35.0% | |
| TTATGGAAAGAAGCTGTAGA+TGG | - | Chr2:79652256-79652275 | MsG0280011106.01.T01:CDS | 35.0% | |
| TTCGTCTGATGGGAATATTT+CGG | - | Chr2:79651772-79651791 | MsG0280011106.01.T01:CDS | 35.0% | |
| ! | AAAGTGATCATATGGACTGT+TGG | - | Chr2:79652112-79652131 | MsG0280011106.01.T01:CDS | 35.0% |
| ! | ATGGATTATGTCTTGATGAC+CGG | + | Chr2:79651432-79651451 | None:intergenic | 35.0% |
| !! | CAATGGATTACTATGGAAAG+AGG | - | Chr2:79651459-79651478 | MsG0280011106.01.T01:CDS | 35.0% |
| !! | GATGTTGCAATGGATTACTA+TGG | - | Chr2:79651452-79651471 | MsG0280011106.01.T01:CDS | 35.0% |
| AAACAGAAGTCACACCAACT+GGG | + | Chr2:79651853-79651872 | None:intergenic | 40.0% | |
| AGGAGGGTAACCAAAATGAA+TGG | - | Chr2:79651660-79651679 | MsG0280011106.01.T01:CDS | 40.0% | |
| ATAGGAACATGAAGCGAGAA+GGG | + | Chr2:79651618-79651637 | None:intergenic | 40.0% | |
| ATGATTTCAAGACCCCTGTT+TGG | - | Chr2:79652170-79652189 | MsG0280011106.01.T01:CDS | 40.0% | |
| ATGGAAAGAAGCTGTAGATG+GGG | - | Chr2:79652258-79652277 | MsG0280011106.01.T01:CDS | 40.0% | |
| GTATTTACTGCAAAGGCAGA+TGG | - | Chr2:79651794-79651813 | MsG0280011106.01.T01:CDS | 40.0% | |
| GTCTGTGAATTCAGTTGCTT+GGG | - | Chr2:79651715-79651734 | MsG0280011106.01.T01:CDS | 40.0% | |
| ! | AATATATTGGCTGTGGCTGA+TGG | - | Chr2:79652217-79652236 | MsG0280011106.01.T01:CDS | 40.0% |
| ! | ATATGGACTGTTGGCAAAGA+AGG | - | Chr2:79652121-79652140 | MsG0280011106.01.T01:CDS | 40.0% |
| ! | CATTATGCATCTGAAGTGCA+GGG | + | Chr2:79652015-79652034 | None:intergenic | 40.0% |
| ! | GACAGGAAATATATTGGCTG+TGG | - | Chr2:79652210-79652229 | MsG0280011106.01.T01:CDS | 40.0% |
| ! | GAGCTTGGATCCATTCATTT+TGG | + | Chr2:79651673-79651692 | None:intergenic | 40.0% |
| ! | TATGGACTGTTGGCAAAGAA+GGG | - | Chr2:79652122-79652141 | MsG0280011106.01.T01:CDS | 40.0% |
| ! | TCATTATGCATCTGAAGTGC+AGG | + | Chr2:79652016-79652035 | None:intergenic | 40.0% |
| ! | TGGTGTGACTTCTGTTTCTT+GGG | - | Chr2:79651856-79651875 | MsG0280011106.01.T01:CDS | 40.0% |
| ! | TTGGTGTGACTTCTGTTTCT+TGG | - | Chr2:79651855-79651874 | MsG0280011106.01.T01:CDS | 40.0% |
| AAAGAAGGGGATCATTGGGA+AGG | - | Chr2:79652136-79652155 | MsG0280011106.01.T01:CDS | 45.0% | |
| AAGAAGCTGTAGATGGGGAA+TGG | - | Chr2:79652263-79652282 | MsG0280011106.01.T01:CDS | 45.0% | |
| AAGGTGTGGAAGCTTAGCAA+TGG | - | Chr2:79651968-79651987 | MsG0280011106.01.T01:CDS | 45.0% | |
| ACCATGATACCCTCCAAACA+GGG | + | Chr2:79652186-79652205 | None:intergenic | 45.0% | |
| ATTGATCAAGCTCACCCAGT+TGG | - | Chr2:79651836-79651855 | MsG0280011106.01.T01:CDS | 45.0% | |
| ATTGGGTTCGAGATGTTGCT+TGG | - | Chr2:79652035-79652054 | MsG0280011106.01.T01:CDS | 45.0% | |
| ATTTCAAGACCCCTGTTTGG+AGG | - | Chr2:79652173-79652192 | MsG0280011106.01.T01:CDS | 45.0% | |
| CAGCATCTAGCAACTTTGAC+TGG | - | Chr2:79651542-79651561 | MsG0280011106.01.T01:CDS | 45.0% | |
| CATAGGAACATGAAGCGAGA+AGG | + | Chr2:79651619-79651638 | None:intergenic | 45.0% | |
| CCTTCTCAGAAGGTTGAAAC+CGG | - | Chr2:79651410-79651429 | MsG0280011106.01.T01:CDS | 45.0% | |
| CGAGAAGGGAACCAAACTTA+GGG | + | Chr2:79651604-79651623 | None:intergenic | 45.0% | |
| CGTCTGTGAATTCAGTTGCT+TGG | - | Chr2:79651714-79651733 | MsG0280011106.01.T01:CDS | 45.0% | |
| CTCGCTTCATGTTCCTATGA+CGG | - | Chr2:79651620-79651639 | MsG0280011106.01.T01:CDS | 45.0% | |
| GAAACAGAAGTCACACCAAC+TGG | + | Chr2:79651854-79651873 | None:intergenic | 45.0% | |
| GCTCATCAAAGACATGAGCT+TGG | + | Chr2:79651688-79651707 | None:intergenic | 45.0% | |
| GTGAGCTTGATCAATCCTTG+AGG | + | Chr2:79651831-79651850 | None:intergenic | 45.0% | |
| TAGCAATGGACAGTGGAAGA+TGG | - | Chr2:79651982-79652001 | MsG0280011106.01.T01:CDS | 45.0% | |
| TGGCAAAGAAGGGGATCATT+GGG | - | Chr2:79652132-79652151 | MsG0280011106.01.T01:CDS | 45.0% | |
| TGTTTCTTGGGCTCCTTCAA+TGG | - | Chr2:79651868-79651887 | MsG0280011106.01.T01:CDS | 45.0% | |
| TTGGCAAAGAAGGGGATCAT+TGG | - | Chr2:79652131-79652150 | MsG0280011106.01.T01:CDS | 45.0% | |
| TTTACTGCAAAGGCAGATGG+TGG | - | Chr2:79651797-79651816 | MsG0280011106.01.T01:CDS | 45.0% | |
| TTTCAAGACCCCTGTTTGGA+GGG | - | Chr2:79652174-79652193 | MsG0280011106.01.T01:CDS | 45.0% | |
| ! | AGGGTATCATGGTCTTTGAC+AGG | - | Chr2:79652193-79652212 | MsG0280011106.01.T01:CDS | 45.0% |
| ! | ATGGACTGTTGGCAAAGAAG+GGG | - | Chr2:79652123-79652142 | MsG0280011106.01.T01:CDS | 45.0% |
| ! | CAACTTTGACTGGTCACCAA+GGG | - | Chr2:79651552-79651571 | MsG0280011106.01.T01:CDS | 45.0% |
| ! | TTGGGTTCGAGATGTTGCTT+GGG | - | Chr2:79652036-79652055 | MsG0280011106.01.T01:CDS | 45.0% |
| AAGAATGACGCGTCCGTCAT+AGG | + | Chr2:79651636-79651655 | None:intergenic | 50.0% | |
| AAGCAGAGACCCAACTCATG+AGG | + | Chr2:79651743-79651762 | None:intergenic | 50.0% | |
| ATGGCAACAGGTGACAACAG+TGG | - | Chr2:79652282-79652301 | MsG0280011106.01.T01:CDS | 50.0% | |
| ATTGCTAGTGCGTCGCAAGA+CGG | - | Chr2:79652088-79652107 | MsG0280011106.01.T01:CDS | 50.0% | |
| CCATGATACCCTCCAAACAG+GGG | + | Chr2:79652185-79652204 | None:intergenic | 50.0% | |
| GACCATGATACCCTCCAAAC+AGG | + | Chr2:79652187-79652206 | None:intergenic | 50.0% | |
| GAGGCTAGCAACAGCATCAT+CGG | - | Chr2:79651478-79651497 | MsG0280011106.01.T01:CDS | 50.0% | |
| GCGAGAAGGGAACCAAACTT+AGG | + | Chr2:79651605-79651624 | None:intergenic | 50.0% | |
| GGAAGCTTAGCAATGGACAG+TGG | - | Chr2:79651975-79651994 | MsG0280011106.01.T01:CDS | 50.0% | |
| TGTAGATGGGGAATGGCAAC+AGG | - | Chr2:79652270-79652289 | MsG0280011106.01.T01:CDS | 50.0% | |
| ! | ACGCGTCATTCTTTGGAAGG+AGG | - | Chr2:79651643-79651662 | MsG0280011106.01.T01:CDS | 50.0% |
| ! | CCGGTTTCAACCTTCTGAGA+AGG | + | Chr2:79651413-79651432 | None:intergenic | 50.0% |
| ! | CGCGTCATTCTTTGGAAGGA+GGG | - | Chr2:79651644-79651663 | MsG0280011106.01.T01:CDS | 50.0% |
| ! | GCAACTTTGACTGGTCACCA+AGG | - | Chr2:79651551-79651570 | MsG0280011106.01.T01:CDS | 50.0% |
| ! | TCATGAGTTGGGTCTCTGCT+TGG | - | Chr2:79651742-79651761 | MsG0280011106.01.T01:CDS | 50.0% |
| ! | TGGCTTGTGCTTCGTCTGAT+GGG | - | Chr2:79651762-79651781 | MsG0280011106.01.T01:CDS | 50.0% |
| !! | ATGACGGACGCGTCATTCTT+TGG | - | Chr2:79651636-79651655 | MsG0280011106.01.T01:CDS | 50.0% |
| !! | GTTGCTTGGGCACCGAATTT+GGG | - | Chr2:79652049-79652068 | MsG0280011106.01.T01:CDS | 50.0% |
| !! | TGCAAAGGCAGATGGTGGAT+GGG | - | Chr2:79651802-79651821 | MsG0280011106.01.T01:CDS | 50.0% |
| !! | TGTTGCTTGGGCACCGAATT+TGG | - | Chr2:79652048-79652067 | MsG0280011106.01.T01:CDS | 50.0% |
| !! | TTGGCTTGTGCTTCGTCTGA+TGG | - | Chr2:79651761-79651780 | MsG0280011106.01.T01:CDS | 50.0% |
| AGGGGATCATTGGGAAGGCA+AGG | - | Chr2:79652141-79652160 | MsG0280011106.01.T01:CDS | 55.0% | |
| CCAGAGCAAAGCTTCTGCAC+AGG | + | Chr2:79651929-79651948 | None:intergenic | 55.0% | |
| CCTGTGCAGAAGCTTTGCTC+TGG | - | Chr2:79651926-79651945 | MsG0280011106.01.T01:CDS | 55.0% | |
| CGGACGCGTCATTCTTTGGA+AGG | - | Chr2:79651640-79651659 | MsG0280011106.01.T01:CDS | 55.0% | |
| GTGCAGAAGCTTTGCTCTGG+TGG | - | Chr2:79651929-79651948 | MsG0280011106.01.T01:CDS | 55.0% | |
| TGGTCACCAAGGGCCTGTTT+GGG | - | Chr2:79651562-79651581 | MsG0280011106.01.T01:CDS | 55.0% | |
| !! | ATGGTGGATGGGACACCTCA+AGG | - | Chr2:79651813-79651832 | MsG0280011106.01.T01:CDS | 55.0% |
| !! | CCCCTGTTTGGAGGGTATCA+TGG | - | Chr2:79652182-79652201 | MsG0280011106.01.T01:CDS | 55.0% |
| !! | CCTGAACCAACAAGAGCACC+CGG | + | Chr2:79651896-79651915 | None:intergenic | 55.0% |
| !! | CTGCAAAGGCAGATGGTGGA+TGG | - | Chr2:79651801-79651820 | MsG0280011106.01.T01:CDS | 55.0% |
| CAACCTCCCAAACAGGCCCT+TGG | + | Chr2:79651571-79651590 | None:intergenic | 60.0% | |
| CTGGTCACCAAGGGCCTGTT+TGG | - | Chr2:79651561-79651580 | MsG0280011106.01.T01:CDS | 60.0% | |
| GCCTGTTTGGGAGGTTGCGT+GGG | - | Chr2:79651574-79651593 | MsG0280011106.01.T01:CDS | 60.0% | |
| GCGTGGGCTCACCCTAAGTT+TGG | - | Chr2:79651590-79651609 | MsG0280011106.01.T01:CDS | 60.0% | |
| GCTTGGGCGCCTCATGAGTT+GGG | - | Chr2:79651731-79651750 | MsG0280011106.01.T01:CDS | 60.0% | |
| TCACCAAGGGCCTGTTTGGG+AGG | - | Chr2:79651565-79651584 | MsG0280011106.01.T01:CDS | 60.0% | |
| TGCTTGGGCGCCTCATGAGT+TGG | - | Chr2:79651730-79651749 | MsG0280011106.01.T01:CDS | 60.0% | |
| TTGGGCTCCTTCAATGGCGC+CGG | - | Chr2:79651874-79651893 | MsG0280011106.01.T01:CDS | 60.0% | |
| !! | CCGGGTGCTCTTGTTGGTTC+AGG | - | Chr2:79651893-79651912 | MsG0280011106.01.T01:CDS | 60.0% |
| GCCCACGCAACCTCCCAAAC+AGG | + | Chr2:79651578-79651597 | None:intergenic | 65.0% | |
| GGCCTGTTTGGGAGGTTGCG+TGG | - | Chr2:79651573-79651592 | MsG0280011106.01.T01:CDS | 65.0% | |
| TGGGCTCCTTCAATGGCGCC+GGG | - | Chr2:79651875-79651894 | MsG0280011106.01.T01:CDS | 65.0% | |
| ! | AGAGCACCCGGCGCCATTGA+AGG | + | Chr2:79651884-79651903 | None:intergenic | 65.0% |
| ! | ATGGCGCCGGGTGCTCTTGT+TGG | - | Chr2:79651887-79651906 | MsG0280011106.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 79651407 | 79652312 | 79651407 | ID=MsG0280011106.01;Name=MsG0280011106.01 |
| Chr2 | mRNA | 79651407 | 79652312 | 79651407 | ID=MsG0280011106.01.T01;Parent=MsG0280011106.01;Name=MsG0280011106.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|301 |
| Chr2 | exon | 79651407 | 79652312 | 79651407 | ID=MsG0280011106.01.T01:exon:1323;Parent=MsG0280011106.01.T01 |
| Chr2 | CDS | 79651407 | 79652312 | 79651407 | ID=MsG0280011106.01.T01:cds;Parent=MsG0280011106.01.T01 |
| Gene Sequence |
| Protein sequence |
