AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017623.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017623.01.T01 MTR_3g109932 99.413 341 2 0 1 341 1 341 0.0 689
MsG0380017623.01.T01 MTR_3g109932 99.365 315 2 0 1 315 1 315 0.0 636
MsG0380017623.01.T01 MTR_1g008280 90.351 342 32 1 1 341 1 342 0.0 578
MsG0380017623.01.T01 MTR_1g008280 88.034 351 32 2 1 341 1 351 0.0 570
MsG0380017623.01.T01 MTR_3g109932 99.180 244 2 0 1 244 1 244 3.36e-177 491
MsG0380017623.01.T01 MTR_1g008280 90.657 289 27 0 1 289 1 289 6.75e-174 485
MsG0380017623.01.T01 MTR_3g109968 99.254 134 1 0 208 341 1 134 2.07e-92 271
MsG0380017623.01.T01 MTR_1g100980 28.994 338 178 7 44 330 42 368 7.30e-29 115
MsG0380017623.01.T01 MTR_6g463340 30.928 291 167 12 54 323 141 418 2.14e-25 106
MsG0380017623.01.T01 MTR_6g463340 30.928 291 167 12 54 323 249 526 4.24e-25 106
MsG0380017623.01.T01 MTR_5g031710 90.566 53 5 0 192 244 48 100 4.86e-25 98.6
MsG0380017623.01.T01 MTR_1g116953 35.644 202 104 8 154 335 327 522 1.26e-23 102
MsG0380017623.01.T01 MTR_7g405780 35.176 199 107 9 154 331 342 539 3.43e-23 100
MsG0380017623.01.T01 MTR_7g077800 30.741 270 151 12 55 301 106 362 5.44e-23 99.0
MsG0380017623.01.T01 MTR_7g077800 30.741 270 151 12 55 301 244 500 1.11e-22 99.4
MsG0380017623.01.T01 MTR_8g030680 30.370 270 152 10 55 301 161 417 6.15e-21 93.6
MsG0380017623.01.T01 MTR_8g030680 30.370 270 152 10 55 301 247 503 7.65e-21 93.6
MsG0380017623.01.T01 MTR_7g405780 36.145 166 88 6 154 301 342 507 9.43e-21 93.2
MsG0380017623.01.T01 MTR_7g077800 29.091 220 123 10 55 254 244 450 9.07e-14 72.4
MsG0380017623.01.T01 MTR_7g405780 34.783 115 60 4 154 253 342 456 1.38e-12 68.6
MsG0380017623.01.T01 MTR_7g405780 34.821 112 58 4 154 250 342 453 1.18e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017623.01.T01 AT2G03120 83.776 339 53 1 1 339 1 337 0.0 564
MsG0380017623.01.T01 AT4G33410 28.443 334 167 8 29 301 17 339 3.79e-26 107
MsG0380017623.01.T01 AT1G63690 35.294 170 92 6 150 301 334 503 9.01e-22 96.7
MsG0380017623.01.T01 AT1G63690 34.706 170 93 6 150 301 334 503 3.26e-21 94.7
MsG0380017623.01.T01 AT1G01650 32.105 190 110 6 151 321 194 383 1.34e-20 92.4
MsG0380017623.01.T01 AT1G01650 32.105 190 110 6 151 321 194 383 1.34e-20 92.4
MsG0380017623.01.T01 AT1G01650 32.105 190 110 6 151 321 194 383 1.34e-20 92.4
MsG0380017623.01.T01 AT1G01650 32.105 190 110 6 151 321 336 525 1.60e-20 92.8
MsG0380017623.01.T01 AT2G43070 29.181 281 164 9 74 331 332 600 8.19e-20 90.9
MsG0380017623.01.T01 AT2G43070 29.181 281 164 9 74 331 326 594 8.84e-20 90.9
MsG0380017623.01.T01 AT2G43070 29.181 281 164 9 74 331 273 541 1.17e-19 90.5
MsG0380017623.01.T01 AT2G43070 29.181 281 164 9 74 331 267 535 1.21e-19 90.1
MsG0380017623.01.T01 AT1G05820 36.471 170 86 8 154 303 337 504 2.31e-19 89.4
MsG0380017623.01.T01 AT1G05820 32.161 199 113 8 154 332 197 393 2.37e-19 88.6
MsG0380017623.01.T01 AT1G05820 32.161 199 113 8 154 332 337 533 3.90e-19 88.6

Find 88 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACGGAACGAATTGCTAATT+TGG 0.197276 3:+98665380 MsG0380017623.01.T01:CDS
ATCATTTGATGCTCCAATTA+AGG 0.200782 3:+98667134 MsG0380017623.01.T01:CDS
TATATTGTACCTGCGGTAAT+TGG 0.229404 3:+98669592 MsG0380017623.01.T01:CDS
TGTTGTGATGAACTGGTTTC+AGG 0.231809 3:+98669370 MsG0380017623.01.T01:CDS
TGACGAACCTGCAATTAATT+AGG 0.240212 3:-98665232 None:intergenic
GCTATTTAAGTTTCTATCTA+AGG 0.241091 3:+98665842 MsG0380017623.01.T01:CDS
ATTGCTAATTTGGCTTTATT+AGG 0.242512 3:+98665390 MsG0380017623.01.T01:CDS
GTACAATACGTGCACGTAAA+TGG 0.250189 3:+98670502 MsG0380017623.01.T01:three_prime_UTR
AAAATGCACTCTTGAAATAC+TGG 0.260331 3:-98669316 None:intergenic
TGTCACATACATCGAAAATA+TGG 0.289325 3:-98666093 None:intergenic
TGCTCCTTGACTGCCCAATC+AGG 0.297514 3:+98670428 MsG0380017623.01.T01:three_prime_UTR
GTTAAAACAACATTTAAGTT+TGG 0.310254 3:-98665559 None:intergenic
TGAATCAGAAGCACCGATAT+TGG 0.321158 3:-98670269 None:intergenic
GTTAGGAGTGAAGAGTGTTT+TGG 0.324843 3:+98670554 MsG0380017623.01.T01:three_prime_UTR
AGATCATCATTCCAATGATT+TGG 0.337619 3:-98666054 None:intergenic
AACGCTTTCTGCCAAATCAT+TGG 0.337952 3:+98666043 MsG0380017623.01.T01:CDS
GGCAGAAAGCGTTTAATAGA+TGG 0.350547 3:-98666033 None:intergenic
TTGGCTGGCAAATAACATAT+TGG 0.355338 3:+98666310 MsG0380017623.01.T01:CDS
TTCCATGGCAAACTTTCTAA+TGG 0.361171 3:+98670453 MsG0380017623.01.T01:three_prime_UTR
CCAAGTCCAAGCATTGAAAA+TGG 0.367027 3:-98667334 None:intergenic
TGCTCTGCGCAAGCATTGGC+TGG 0.369363 3:+98666295 MsG0380017623.01.T01:CDS
CTGGAATGGTGAAGTTAAAC+AGG 0.372693 3:+98669636 MsG0380017623.01.T01:CDS
GATCGGAGAAAGATAGAATT+GGG 0.382094 3:-98665192 None:intergenic
ATGCTTGCGCAGAGCATACC+AGG 0.396831 3:-98666288 None:intergenic
GGGTCTTGCTTTCTGCATCC+AGG 0.398103 3:+98666331 MsG0380017623.01.T01:CDS
TCTTTGACCTTTGACTCTTT+CGG 0.399809 3:+98665133 MsG0380017623.01.T01:five_prime_UTR
TCTCTTGGCTCCTTCAAGAC+TGG 0.403236 3:+98666946 MsG0380017623.01.T01:CDS
TTACAATTGTTGTGATGAAC+TGG 0.407335 3:+98669363 MsG0380017623.01.T01:CDS
CAATATTGACATGGTTGGTT+AGG 0.409453 3:+98670537 MsG0380017623.01.T01:three_prime_UTR
CGTTGGTGCAGTTGGTTTGA+CGG 0.413210 3:-98665617 None:intergenic
AGATCGGAGAAAGATAGAAT+TGG 0.418376 3:-98665193 None:intergenic
CAAGACTGGTGCCATTCTCT+TGG 0.418444 3:+98666960 MsG0380017623.01.T01:CDS
TGATGCCAAGTCTAGCAAAA+AGG 0.420156 3:+98670226 MsG0380017623.01.T01:CDS
GGAATTGAAATGCTTTCTCT+TGG 0.423273 3:+98666931 MsG0380017623.01.T01:CDS
GGTATGCTCTGCGCAAGCAT+TGG 0.428819 3:+98666291 MsG0380017623.01.T01:CDS
TGGCTGGCAAATAACATATT+GGG 0.442504 3:+98666311 MsG0380017623.01.T01:CDS
AGTTAAAGCATGTCCAATAT+CGG 0.445369 3:+98670256 MsG0380017623.01.T01:exon
GTGCAGTTGGTTTGACGGAT+CGG 0.468327 3:-98665612 None:intergenic
GAGAATGGCACCAGTCTTGA+AGG 0.470820 3:-98666956 None:intergenic
CTCACCACTCCTCTCTCTCT+CGG 0.473182 3:+98670480 MsG0380017623.01.T01:three_prime_UTR
GCTCCTTGACTGCCCAATCA+GGG 0.476847 3:+98670429 MsG0380017623.01.T01:three_prime_UTR
CCGTCGAGATTGAGTTTACA+AGG 0.477957 3:+98666225 MsG0380017623.01.T01:CDS
CAGATCGTTGCTGCAGTCCC+TGG 0.479847 3:+98666251 MsG0380017623.01.T01:CDS
TTTGCCATGGAAACCCTGAT+TGG 0.480401 3:-98670442 None:intergenic
AGCATTGCACTTCCAACAAA+GGG 0.481693 3:-98665804 None:intergenic
ACTCTCTTCTTGAGATGAAT+CGG 0.482413 3:-98670204 None:intergenic
CTGCCCAATCAGGGTTTCCA+TGG 0.486913 3:+98670438 MsG0380017623.01.T01:three_prime_UTR
TAACACAATATTGACATGGT+TGG 0.487369 3:+98670532 MsG0380017623.01.T01:three_prime_UTR
AAATGCACTCTTGAAATACT+GGG 0.490097 3:-98669315 None:intergenic
TTGCCATGGAAACCCTGATT+GGG 0.495997 3:-98670441 None:intergenic
ATGGATCTAGTGTGCGAGAT+TGG 0.499831 3:-98665334 None:intergenic
ACAGGCTACTTCTTTGTACT+CGG 0.505091 3:+98665885 MsG0380017623.01.T01:CDS
GCTTGCATCACTGTGTTTGT+CGG 0.510711 3:+98665583 MsG0380017623.01.T01:CDS
TTAGTGAACACTGTGTTGAC+AGG 0.514738 3:+98665867 MsG0380017623.01.T01:CDS
GGAATGATGATCTCATAGTC+TGG 0.516052 3:+98666064 MsG0380017623.01.T01:CDS
CTTCACCATTCCAGATGCAA+TGG 0.516632 3:-98669627 None:intergenic
GTACTTACCGTTGGTGCAGT+TGG 0.522180 3:-98665625 None:intergenic
AAAACGCATAGCATGTTCCT+TGG 0.531310 3:-98665781 None:intergenic
CTTGGTGATATTGTTATCCC+AGG 0.535420 3:+98667352 MsG0380017623.01.T01:CDS
TTTGACAACAAGCGGTGCTA+AGG 0.535421 3:-98665530 None:intergenic
TTTGCAACGCTGACCATCAC+AGG 0.536507 3:-98667111 None:intergenic
GAACTGGTTTCAGGCTGCAC+AGG 0.544980 3:+98669379 MsG0380017623.01.T01:CDS
TTCACCATTCCAGATGCAAT+GGG 0.551965 3:-98669626 None:intergenic
GGATCTACTTTGACAACAAG+CGG 0.559911 3:-98665538 None:intergenic
GGCCTTGCAGAATCTGCTGT+GGG 0.560098 3:-98667313 None:intergenic
AACCATTAGAAAGTTTGCCA+TGG 0.560755 3:-98670455 None:intergenic
CGTCAAACCAACTGCACCAA+CGG 0.561582 3:+98665618 MsG0380017623.01.T01:CDS
TAGCATTGCACTTCCAACAA+AGG 0.562776 3:-98665805 None:intergenic
CTAATCACAGTCTGTTACAG+AGG 0.564128 3:-98670354 None:intergenic
AAACCCTGATTGGGCAGTCA+AGG 0.565288 3:-98670432 None:intergenic
TTTACTACCGAAAGAGTCAA+AGG 0.566706 3:-98665140 None:intergenic
CGTATTGTACCGAGAGAGAG+AGG 0.567838 3:-98670489 None:intergenic
AGAAAAGAATTGCAGCAGAT+CGG 0.568020 3:-98665209 None:intergenic
GCGGCCCATTGCATCTGGAA+TGG 0.576051 3:+98669622 MsG0380017623.01.T01:CDS
GGTACAATATACAAAAGAGC+AGG 0.585695 3:-98669580 None:intergenic
TCCCCACAGCAGATTCTGCA+AGG 0.595992 3:+98667311 MsG0380017623.01.T01:CDS
TTGCGGTTTGATGTGTCTAG+AGG 0.601003 3:+98669284 MsG0380017623.01.T01:CDS
GAGTCAAAGGTCAAAGAGAA+CGG 0.602014 3:-98665127 None:intergenic
TGGCCTTGCAGAATCTGCTG+TGG 0.613278 3:-98667314 None:intergenic
ATCGGAGAAAGATAGAATTG+GGG 0.621997 3:-98665191 None:intergenic
TATGCAGGAGACAATGTCCA+AGG 0.637852 3:+98665764 MsG0380017623.01.T01:intron
CCTTGTAAACTCAATCTCGA+CGG 0.651095 3:-98666225 None:intergenic
AATGCACTCTTGAAATACTG+GGG 0.679873 3:-98669314 None:intergenic
GACAAACACAGTGATGCAAG+CGG 0.680075 3:-98665581 None:intergenic
TTGCTGCGAAATGAAGAACA+CGG 0.684413 3:+98665362 MsG0380017623.01.T01:exon
TCGGAGAAAGATAGAATTGG+GGG 0.695601 3:-98665190 None:intergenic
GCCTTGCAGAATCTGCTGTG+GGG 0.709703 3:-98667312 None:intergenic
TGTACCGAGAGAGAGAGGAG+TGG 0.711106 3:-98670484 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTTAAAAACTTATAAAA+GGG - Chr3:98667856-98667875 None:intergenic 10.0%
!!! AGTTAATATTTTTTTAGTTA+CGG - Chr3:98668941-98668960 None:intergenic 10.0%
!!! TTTAATTTTTTTTTTCGTTT+GGG + Chr3:98669430-98669449 MsG0380017623.01.T01:intron 10.0%
!!! TTTTAATTTTTTTTTTCGTT+TGG + Chr3:98669429-98669448 MsG0380017623.01.T01:intron 10.0%
!! AAAAATAATAAATGTTGCAT+TGG - Chr3:98668651-98668670 None:intergenic 15.0%
!! AATAGGTTATTATGTATAAT+TGG - Chr3:98666539-98666558 None:intergenic 15.0%
!! ATAAATTATCTACAATCAAT+TGG + Chr3:98669199-98669218 MsG0380017623.01.T01:intron 15.0%
!! ATACTAATTGAAAAAGAATA+AGG + Chr3:98667653-98667672 MsG0380017623.01.T01:intron 15.0%
!! CACAAAACATAATTAATTAT+TGG - Chr3:98666713-98666732 None:intergenic 15.0%
!! GAAGTTTAAAAACTTATAAA+AGG - Chr3:98667857-98667876 None:intergenic 15.0%
!! GAATGAAATTCATTAAATAA+GGG - Chr3:98668687-98668706 None:intergenic 15.0%
!! GATAATTTATTGAAGATAAA+TGG - Chr3:98669189-98669208 None:intergenic 15.0%
!! GTAAATAAGTCAAAATTATT+TGG - Chr3:98667512-98667531 None:intergenic 15.0%
!! TACTAATTGAAAAAGAATAA+GGG + Chr3:98667654-98667673 MsG0380017623.01.T01:intron 15.0%
!! TATACATAATAACCTATTAT+AGG + Chr3:98666541-98666560 MsG0380017623.01.T01:intron 15.0%
!! TATTCATTATGAAAAAAGTA+GGG - Chr3:98668226-98668245 None:intergenic 15.0%
!! TGAATGAAATTCATTAAATA+AGG - Chr3:98668688-98668707 None:intergenic 15.0%
!! TGCAATATATAAAAGAATAA+GGG - Chr3:98665712-98665731 None:intergenic 15.0%
!! TTAAATTATGGTATTTAACT+TGG + Chr3:98666564-98666583 MsG0380017623.01.T01:intron 15.0%
!! TTATTCATTATGAAAAAAGT+AGG - Chr3:98668227-98668246 None:intergenic 15.0%
!! TTGCAATATATAAAAGAATA+AGG - Chr3:98665713-98665732 None:intergenic 15.0%
!!! AATAAGCTTAATTTCTAAAA+AGG - Chr3:98666779-98666798 None:intergenic 15.0%
!!! ATGATTTTATAGTTTTAAGT+TGG + Chr3:98670065-98670084 MsG0380017623.01.T01:intron 15.0%
!!! ATTAATTATGTTGATTTCAA+TGG - Chr3:98668772-98668791 None:intergenic 15.0%
!!! GTTAATATTTTTTTAGTTAC+GGG - Chr3:98668940-98668959 None:intergenic 15.0%
!!! TTAATTTTTTTTTTCGTTTG+GGG + Chr3:98669431-98669450 MsG0380017623.01.T01:intron 15.0%
!!! TTTAGTTCTTAGTATAAATT+TGG + Chr3:98667436-98667455 MsG0380017623.01.T01:intron 15.0%
!! AAATTGCCAATATGAAAAAT+AGG - Chr3:98670403-98670422 None:intergenic 20.0%
!! ACATATAGATTGTAGAATAT+GGG + Chr3:98669917-98669936 MsG0380017623.01.T01:intron 20.0%
!! ACCATAATTTAACCTATAAT+AGG - Chr3:98666556-98666575 None:intergenic 20.0%
!! ACCTATTATAGGTTAAATTA+TGG + Chr3:98666552-98666571 MsG0380017623.01.T01:intron 20.0%
!! ATATAAAACACGTCAAAAAA+AGG - Chr3:98665967-98665986 None:intergenic 20.0%
!! CAAATGTAAAGTTTCTTTAT+AGG + Chr3:98667757-98667776 MsG0380017623.01.T01:intron 20.0%
!! CACTAACTAACAATTAATAA+GGG + Chr3:98668720-98668739 MsG0380017623.01.T01:intron 20.0%
!! TACATATAGATTGTAGAATA+TGG + Chr3:98669916-98669935 MsG0380017623.01.T01:intron 20.0%
!! TTTAAATTCAACTTCACAAA+AGG - Chr3:98667409-98667428 None:intergenic 20.0%
!!! AATTTTGTATTGAATTATGC+AGG + Chr3:98665749-98665768 MsG0380017623.01.T01:intron 20.0%
!!! ATTAAATAAGGGTATAGTAA+TGG - Chr3:98668676-98668695 None:intergenic 20.0%
!!! ATTGTAAAGGACAATTATTT+TGG - Chr3:98668627-98668646 None:intergenic 20.0%
!!! ATTTTAAGTCTTTGCTTAAA+TGG + Chr3:98668259-98668278 MsG0380017623.01.T01:intron 20.0%
!!! GTTAAAACAACATTTAAGTT+TGG - Chr3:98665562-98665581 None:intergenic 20.0%
!!! TAATTTTTTTTTTCGTTTGG+GGG + Chr3:98669432-98669451 MsG0380017623.01.T01:intron 20.0%
!!! TTATGTTTTGTGCATATTTT+TGG + Chr3:98666721-98666740 MsG0380017623.01.T01:intron 20.0%
!!! TTATGTTTTTTGCTACTTTT+AGG + Chr3:98666161-98666180 MsG0380017623.01.T01:intron 20.0%
!!! TTGTAAAGGACAATTATTTT+GGG - Chr3:98668626-98668645 None:intergenic 20.0%
!!! TTTTGTATATGACATTTTCT+GGG + Chr3:98667077-98667096 MsG0380017623.01.T01:CDS 20.0%
!!! TTTTTAACACAATATTGACA+TGG + Chr3:98670528-98670547 MsG0380017623.01.T01:three_prime_UTR 20.0%
!!! TTTTTATCAGATAGTTATCA+TGG - Chr3:98667239-98667258 None:intergenic 20.0%
!!! TTTTTGTATATGACATTTTC+TGG + Chr3:98667076-98667095 MsG0380017623.01.T01:CDS 20.0%
! AAAAAAACATACCAAGAGAA+TGG - Chr3:98666974-98666993 None:intergenic 25.0%
! AAACGACTATAATTTAGAGA+CGG + Chr3:98668821-98668840 MsG0380017623.01.T01:intron 25.0%
! AACCAGATGCATAAAAAATA+TGG - Chr3:98669712-98669731 None:intergenic 25.0%
! AATTGAAAAAGAATAAGGGA+AGG + Chr3:98667658-98667677 MsG0380017623.01.T01:intron 25.0%
! ACCAAGTTCAATTTAAAAGA+AGG - Chr3:98667000-98667019 None:intergenic 25.0%
! AGAGAAAAAATCTCATTGTT+TGG - Chr3:98667886-98667905 None:intergenic 25.0%
! ATCAATTAATCATCCAAACA+GGG - Chr3:98667717-98667736 None:intergenic 25.0%
! ATGCTTATAGTTAAATTGAC+AGG + Chr3:98666407-98666426 MsG0380017623.01.T01:intron 25.0%
! ATGTAACTGGCATAAATAAA+AGG - Chr3:98666502-98666521 None:intergenic 25.0%
! ATTGAAAAAGAATAAGGGAA+GGG + Chr3:98667659-98667678 MsG0380017623.01.T01:intron 25.0%
! ATTTGATTCTCTAGATAATG+TGG - Chr3:98668005-98668024 None:intergenic 25.0%
! CAGTTATATTGGATTCTTAT+TGG + Chr3:98668526-98668545 MsG0380017623.01.T01:intron 25.0%
! CCACTAACTAACAATTAATA+AGG + Chr3:98668719-98668738 MsG0380017623.01.T01:intron 25.0%
! CCATGAGTTAATAAAAGAAA+TGG - Chr3:98666678-98666697 None:intergenic 25.0%
! CCTTATTAATTGTTAGTTAG+TGG - Chr3:98668722-98668741 None:intergenic 25.0%
! CTCTAAATTATAGTCGTTTA+AGG - Chr3:98668820-98668839 None:intergenic 25.0%
! GAAGAAATTGGTACTAATTT+AGG - Chr3:98668112-98668131 None:intergenic 25.0%
! GCTTGTATTGAAATTTGAAA+GGG + Chr3:98666632-98666651 MsG0380017623.01.T01:intron 25.0%
! TAATAAAAGAAATGGTTGAC+AGG - Chr3:98666670-98666689 None:intergenic 25.0%
! TATGACATAAACACTAAAGA+GGG - Chr3:98668875-98668894 None:intergenic 25.0%
! TGCTTGTATTGAAATTTGAA+AGG + Chr3:98666631-98666650 MsG0380017623.01.T01:intron 25.0%
! TGTTTAATTCATTCATGCAT+TGG + Chr3:98666136-98666155 MsG0380017623.01.T01:intron 25.0%
! TTATGACATAAACACTAAAG+AGG - Chr3:98668876-98668895 None:intergenic 25.0%
! TTATGCCAGTTACATAAATT+TGG + Chr3:98666507-98666526 MsG0380017623.01.T01:intron 25.0%
! TTGTTCCAAATTTATGTAAC+TGG - Chr3:98666515-98666534 None:intergenic 25.0%
! TTTACACTACTCATAATACT+TGG - Chr3:98669790-98669809 None:intergenic 25.0%
! TTTGATTCTCTAGATAATGT+GGG - Chr3:98668004-98668023 None:intergenic 25.0%
! TTTGGTTAAATACCTTCTAA+AGG + Chr3:98669941-98669960 MsG0380017623.01.T01:intron 25.0%
!! CCATTTCTTTTATTAACTCA+TGG + Chr3:98666675-98666694 MsG0380017623.01.T01:intron 25.0%
!! CTGTATTTGACATCAAATTT+TGG + Chr3:98669152-98669171 MsG0380017623.01.T01:intron 25.0%
!! GCTATTTAAGTTTCTATCTA+AGG + Chr3:98665842-98665861 MsG0380017623.01.T01:CDS 25.0%
!! TAAATATATGTTGTCGCTTA+CGG - Chr3:98669058-98669077 None:intergenic 25.0%
!! TAACGTTTTTCCCTTTTTAT+TGG + Chr3:98669542-98669561 MsG0380017623.01.T01:intron 25.0%
!! TATAAACTGCAAATTAGCTT+TGG - Chr3:98669826-98669845 None:intergenic 25.0%
!! TCCTTCTTTTAAATTGAACT+TGG + Chr3:98666996-98667015 MsG0380017623.01.T01:intron 25.0%
!! TTTACATTCACATATTTTGC+AGG + Chr3:98667047-98667066 MsG0380017623.01.T01:intron 25.0%
!!! AAAAAAATGAGGGTTCTAAA+AGG + Chr3:98667808-98667827 MsG0380017623.01.T01:intron 25.0%
!!! AAAAAATGAGGGTTCTAAAA+GGG + Chr3:98667809-98667828 MsG0380017623.01.T01:intron 25.0%
!!! AGCTTTAAAAGTTTGTTCTT+TGG - Chr3:98667947-98667966 None:intergenic 25.0%
!!! AGTGCTTTAAAATGTACTTA+AGG + Chr3:98669879-98669898 MsG0380017623.01.T01:intron 25.0%
!!! ATCCATATTTTTTATGCATC+TGG + Chr3:98669707-98669726 MsG0380017623.01.T01:intron 25.0%
!!! ATTGCTAATTTGGCTTTATT+AGG + Chr3:98665390-98665409 MsG0380017623.01.T01:CDS 25.0%
!!! ATTTTTTAGACGTAGATCAA+TGG - Chr3:98669112-98669131 None:intergenic 25.0%
!!! GCAAAGATTTTAACCTTAAT+TGG - Chr3:98667150-98667169 None:intergenic 25.0%
!!! GTTAGTCCTATTTTTCATAT+TGG + Chr3:98670394-98670413 MsG0380017623.01.T01:three_prime_UTR 25.0%
!!! TAAATTTTTCAAACTGTGCT+GGG + Chr3:98667462-98667481 MsG0380017623.01.T01:intron 25.0%
!!! TATTTCAAGAGTGCATTTTT+AGG + Chr3:98669320-98669339 MsG0380017623.01.T01:CDS 25.0%
!!! TGACTGTATTTTTTCCAATT+AGG + Chr3:98669242-98669261 MsG0380017623.01.T01:intron 25.0%
!!! TTAAATTTTTCAAACTGTGC+TGG + Chr3:98667461-98667480 MsG0380017623.01.T01:intron 25.0%
!!! TTAAGTACATTTTAAAGCAC+TGG - Chr3:98669880-98669899 None:intergenic 25.0%
!!! TTTCCAATTAGGTATTTTTG+TGG + Chr3:98669253-98669272 MsG0380017623.01.T01:intron 25.0%
AAAAATAGACCCATAACCAA+AGG + Chr3:98669126-98669145 MsG0380017623.01.T01:intron 30.0%
AAAATAGACCCATAACCAAA+GGG + Chr3:98669127-98669146 MsG0380017623.01.T01:intron 30.0%
AAAATGCACTCTTGAAATAC+TGG - Chr3:98669319-98669338 None:intergenic 30.0%
AAATCTCATTGTTTGGACTT+TGG - Chr3:98667879-98667898 None:intergenic 30.0%
AAATGCACTCTTGAAATACT+GGG - Chr3:98669318-98669337 None:intergenic 30.0%
AAATTTGACAGCACTATTCA+AGG + Chr3:98666591-98666610 MsG0380017623.01.T01:intron 30.0%
AACAAAACAGCTTATGTACA+TGG - Chr3:98665654-98665673 None:intergenic 30.0%
AAGAGACAATTATTGTGAGA+CGG - Chr3:98668586-98668605 None:intergenic 30.0%
AAGCTTATTCTGTAGAAAAC+AGG + Chr3:98666790-98666809 MsG0380017623.01.T01:intron 30.0%
ACAAAACAGCTTATGTACAT+GGG - Chr3:98665653-98665672 None:intergenic 30.0%
ACAAATGTTGCTGAAGTTAT+TGG + Chr3:98670038-98670057 MsG0380017623.01.T01:intron 30.0%
ACAATCAATTGGTTGTTACT+TGG + Chr3:98669210-98669229 MsG0380017623.01.T01:intron 30.0%
ACTAACACAAACACAGATAT+TGG - Chr3:98668150-98668169 None:intergenic 30.0%
AGATCATCATTCCAATGATT+TGG - Chr3:98666057-98666076 None:intergenic 30.0%
AGTTAAAGCATGTCCAATAT+CGG + Chr3:98670256-98670275 MsG0380017623.01.T01:exon 30.0%
ATCATTTGATGCTCCAATTA+AGG + Chr3:98667134-98667153 MsG0380017623.01.T01:CDS 30.0%
ATGCCACAAAAATACCTAAT+TGG - Chr3:98669259-98669278 None:intergenic 30.0%
ATTGACATTGATATGAGAAC+AGG - Chr3:98669689-98669708 None:intergenic 30.0%
CATCAATTAATCATCCAAAC+AGG - Chr3:98667718-98667737 None:intergenic 30.0%
CTGTTTGGATGATTAATTGA+TGG + Chr3:98667716-98667735 MsG0380017623.01.T01:intron 30.0%
CTTTCTATTAATGCAGTTGT+TGG + Chr3:98670160-98670179 MsG0380017623.01.T01:intron 30.0%
GATGGAGTTACTGTTAATTA+CGG - Chr3:98666897-98666916 None:intergenic 30.0%
GGAAAAATTATACTACACAC+CGG - Chr3:98669750-98669769 None:intergenic 30.0%
TAACACAATATTGACATGGT+TGG + Chr3:98670532-98670551 MsG0380017623.01.T01:three_prime_UTR 30.0%
TACGATCAGTGAATTTGATT+TGG - Chr3:98669486-98669505 None:intergenic 30.0%
TATAAAAGGGAAGAAACAGA+GGG - Chr3:98667843-98667862 None:intergenic 30.0%
TGTCACATACATCGAAAATA+TGG - Chr3:98666096-98666115 None:intergenic 30.0%
TGTGACACTGAGTATAATAT+AGG + Chr3:98666109-98666128 MsG0380017623.01.T01:intron 30.0%
TTACAATTGTTGTGATGAAC+TGG + Chr3:98669363-98669382 MsG0380017623.01.T01:CDS 30.0%
TTATAAAAGGGAAGAAACAG+AGG - Chr3:98667844-98667863 None:intergenic 30.0%
TTGACATTGATATGAGAACA+GGG - Chr3:98669688-98669707 None:intergenic 30.0%
TTGGAAATGTAACACAAAAC+AGG - Chr3:98669771-98669790 None:intergenic 30.0%
! AACATCATGTTTAGAGCTTA+AGG + Chr3:98670089-98670108 MsG0380017623.01.T01:intron 30.0%
! ACAGCATGACTTCAAATTTT+GGG + Chr3:98667555-98667574 MsG0380017623.01.T01:intron 30.0%
! ATGTTGCATTGGTATTGTAA+AGG - Chr3:98668640-98668659 None:intergenic 30.0%
! CTTTTCTCCTAATTAATTGC+AGG + Chr3:98665225-98665244 MsG0380017623.01.T01:five_prime_UTR 30.0%
! TCTTTTGTATATTGTACCTG+CGG + Chr3:98669585-98669604 MsG0380017623.01.T01:CDS 30.0%
!! AACCATTTCTAGCAAATTCA+TGG - Chr3:98667592-98667611 None:intergenic 30.0%
!! ATTAGGTATTTTTGTGGCAT+TGG + Chr3:98669259-98669278 MsG0380017623.01.T01:intron 30.0%
!!! ACTGTTACTTTTCGAGAATT+CGG + Chr3:98670302-98670321 MsG0380017623.01.T01:three_prime_UTR 30.0%
!!! ATTTTTGGTATTCACTTTCC+TGG + Chr3:98666736-98666755 MsG0380017623.01.T01:intron 30.0%
!!! GCATTTTTAGGATACACTTT+TGG + Chr3:98669332-98669351 MsG0380017623.01.T01:CDS 30.0%
AAAAAGAATAAGGGAAGGGA+TGG + Chr3:98667663-98667682 MsG0380017623.01.T01:intron 35.0%
AAAATCTTTGCTGAGTGCAA+TGG + Chr3:98667159-98667178 MsG0380017623.01.T01:intron 35.0%
AAACGGTCGTACAGTTATAT+TGG + Chr3:98668515-98668534 MsG0380017623.01.T01:intron 35.0%
AACCATTAGAAAGTTTGCCA+TGG - Chr3:98670458-98670477 None:intergenic 35.0%
AAGAGGGACACCAATAAAAA+GGG - Chr3:98669555-98669574 None:intergenic 35.0%
AATCATTTCTGTGATTGCAG+CGG + Chr3:98665308-98665327 MsG0380017623.01.T01:intron 35.0%
AATGCACTCTTGAAATACTG+GGG - Chr3:98669317-98669336 None:intergenic 35.0%
AATGGTCAAACTGTGATGTT+CGG + Chr3:98668277-98668296 MsG0380017623.01.T01:intron 35.0%
ACAAACACAGATATTGGACA+CGG - Chr3:98668144-98668163 None:intergenic 35.0%
ACTCTCTTCTTGAGATGAAT+CGG - Chr3:98670207-98670226 None:intergenic 35.0%
AGAAAAGAATTGCAGCAGAT+CGG - Chr3:98665212-98665231 None:intergenic 35.0%
AGATCGGAGAAAGATAGAAT+TGG - Chr3:98665196-98665215 None:intergenic 35.0%
AGATTGTAGAATATGGGCTT+TGG + Chr3:98669923-98669942 MsG0380017623.01.T01:intron 35.0%
AGGTTTGTGCGCAATTATTA+AGG - Chr3:98668800-98668819 None:intergenic 35.0%
ATCAACAGAGTAATCTTACC+TGG - Chr3:98667373-98667392 None:intergenic 35.0%
ATCGGAGAAAGATAGAATTG+GGG - Chr3:98665194-98665213 None:intergenic 35.0%
ATTCAGGACATGAACATTTG+AGG + Chr3:98668477-98668496 MsG0380017623.01.T01:intron 35.0%
CAGTTTATACTGTATGTGTG+TGG + Chr3:98669837-98669856 MsG0380017623.01.T01:intron 35.0%
CTGCAACAAAAGATATTGTG+CGG - Chr3:98670008-98670027 None:intergenic 35.0%
GAAGGGGAACAAAAAAATGA+GGG + Chr3:98667798-98667817 MsG0380017623.01.T01:intron 35.0%
GACTATAATTTAGAGACGGA+GGG + Chr3:98668825-98668844 MsG0380017623.01.T01:intron 35.0%
GATCGGAGAAAGATAGAATT+GGG - Chr3:98665195-98665214 None:intergenic 35.0%
GATTAATTGATGGAGCAAAG+TGG + Chr3:98667726-98667745 MsG0380017623.01.T01:intron 35.0%
GCAACAAACTATATCATCAC+AGG - Chr3:98667982-98668001 None:intergenic 35.0%
GGAATTGAAATGCTTTCTCT+TGG + Chr3:98666931-98666950 MsG0380017623.01.T01:CDS 35.0%
GGGAAAAACGTTAATAGAGA+AGG - Chr3:98669535-98669554 None:intergenic 35.0%
GGGGGAAAATGATTAAATCA+GGG - Chr3:98665175-98665194 None:intergenic 35.0%
GGTACAATATACAAAAGAGC+AGG - Chr3:98669583-98669602 None:intergenic 35.0%
GTAAAAATGCCTGTTCTAAC+CGG + Chr3:98667613-98667632 MsG0380017623.01.T01:intron 35.0%
GTATTGTTCCATTTCAAACC+AGG - Chr3:98666757-98666776 None:intergenic 35.0%
GTTAGTGCTTCATAGTTCAA+AGG + Chr3:98668164-98668183 MsG0380017623.01.T01:intron 35.0%
TAAAAGAATAAGGGCCTGTT+CGG - Chr3:98665703-98665722 None:intergenic 35.0%
TATATTGTACCTGCGGTAAT+TGG + Chr3:98669592-98669611 MsG0380017623.01.T01:CDS 35.0%
TCAACAGAGTAATCTTACCT+GGG - Chr3:98667372-98667391 None:intergenic 35.0%
TCATTTCGCAGCAAAAATGA+TGG - Chr3:98665356-98665375 None:intergenic 35.0%
TCTACAACCTGCAATTTGAA+GGG + Chr3:98667781-98667800 MsG0380017623.01.T01:intron 35.0%
TCTTTGACCTTTGACTCTTT+CGG + Chr3:98665133-98665152 MsG0380017623.01.T01:five_prime_UTR 35.0%
TGAAGGGGAACAAAAAAATG+AGG + Chr3:98667797-98667816 MsG0380017623.01.T01:intron 35.0%
TGAATGTAACTACCATGTGT+CGG - Chr3:98668075-98668094 None:intergenic 35.0%
TGACGAACCTGCAATTAATT+AGG - Chr3:98665235-98665254 None:intergenic 35.0%
TGGCTGGCAAATAACATATT+GGG + Chr3:98666311-98666330 MsG0380017623.01.T01:CDS 35.0%
TGGGGGAAAATGATTAAATC+AGG - Chr3:98665176-98665195 None:intergenic 35.0%
TTAGTATTACAGTTCCCCAT+AGG - Chr3:98667640-98667659 None:intergenic 35.0%
TTCCATGGCAAACTTTCTAA+TGG + Chr3:98670453-98670472 MsG0380017623.01.T01:three_prime_UTR 35.0%
TTCTACAACCTGCAATTTGA+AGG + Chr3:98667780-98667799 MsG0380017623.01.T01:intron 35.0%
TTGGCTGGCAAATAACATAT+TGG + Chr3:98666310-98666329 MsG0380017623.01.T01:CDS 35.0%
TTTACTACCGAAAGAGTCAA+AGG - Chr3:98665143-98665162 None:intergenic 35.0%
! AGGTTCGTCAAATGTGTTTT+TGG + Chr3:98665245-98665264 MsG0380017623.01.T01:intron 35.0%
! ATCATGTTTAGAGCTTAAGG+TGG + Chr3:98670092-98670111 MsG0380017623.01.T01:intron 35.0%
! CAATATTGACATGGTTGGTT+AGG + Chr3:98670537-98670556 MsG0380017623.01.T01:three_prime_UTR 35.0%
! CACAGCATGACTTCAAATTT+TGG + Chr3:98667554-98667573 MsG0380017623.01.T01:intron 35.0%
! GGTTTGATTTCAAGCATTAC+CGG + Chr3:98669728-98669747 MsG0380017623.01.T01:intron 35.0%
! TATAGGTAAAGCATCAAACC+TGG - Chr3:98666352-98666371 None:intergenic 35.0%
! TTCACTTTCCTGGTTTGAAA+TGG + Chr3:98666746-98666765 MsG0380017623.01.T01:intron 35.0%
! TTCATCCTTTTTGCTAGACT+TGG - Chr3:98670234-98670253 None:intergenic 35.0%
!! TTCTTTGGATTAGCAGCATT+GGG - Chr3:98667932-98667951 None:intergenic 35.0%
!! TTTAGGATACACTTTTGGCT+TGG + Chr3:98669337-98669356 MsG0380017623.01.T01:CDS 35.0%
!!! GACTTGTGACCAGTTTTAAA+AGG + Chr3:98669980-98669999 MsG0380017623.01.T01:intron 35.0%
AAAACGCATAGCATGTTCCT+TGG - Chr3:98665784-98665803 None:intergenic 40.0%
AACGCTTTCTGCCAAATCAT+TGG + Chr3:98666043-98666062 MsG0380017623.01.T01:CDS 40.0%
AATACAGTGCCCTTTGGTTA+TGG - Chr3:98669139-98669158 None:intergenic 40.0%
AATTGATGGAGCAAAGTGGA+AGG + Chr3:98667730-98667749 MsG0380017623.01.T01:intron 40.0%
ACAGGCTACTTCTTTGTACT+CGG + Chr3:98665885-98665904 MsG0380017623.01.T01:CDS 40.0%
ACTCCATCTGTAACGTTTAC+AGG + Chr3:98666909-98666928 MsG0380017623.01.T01:intron 40.0%
AGACAATTATTGTGAGACGG+AGG - Chr3:98668583-98668602 None:intergenic 40.0%
AGCATTGCACTTCCAACAAA+GGG - Chr3:98665807-98665826 None:intergenic 40.0%
AGTGCATTTACTAGATCCAG+CGG - Chr3:98668372-98668391 None:intergenic 40.0%
ATACAGTGCCCTTTGGTTAT+GGG - Chr3:98669138-98669157 None:intergenic 40.0%
ATGTCAAATACAGTGCCCTT+TGG - Chr3:98669145-98669164 None:intergenic 40.0%
ATTCAAGGTTTAGCGGTGAT+AGG + Chr3:98666606-98666625 MsG0380017623.01.T01:intron 40.0%
ATTGATGGAGCAAAGTGGAA+GGG + Chr3:98667731-98667750 MsG0380017623.01.T01:intron 40.0%
CAAGAGGGACACCAATAAAA+AGG - Chr3:98669556-98669575 None:intergenic 40.0%
CAAGCAAAGTTGCCTTTAGA+AGG - Chr3:98669956-98669975 None:intergenic 40.0%
CACGGAACGAATTGCTAATT+TGG + Chr3:98665380-98665399 MsG0380017623.01.T01:CDS 40.0%
CAGCACTATTCAAGGTTTAG+CGG + Chr3:98666599-98666618 MsG0380017623.01.T01:intron 40.0%
CAGGTTCGTAACCATTTAGA+TGG + Chr3:98666426-98666445 MsG0380017623.01.T01:intron 40.0%
CCTTGTAAACTCAATCTCGA+CGG - Chr3:98666228-98666247 None:intergenic 40.0%
CGACTATAATTTAGAGACGG+AGG + Chr3:98668824-98668843 MsG0380017623.01.T01:intron 40.0%
CTAATCACAGTCTGTTACAG+AGG - Chr3:98670357-98670376 None:intergenic 40.0%
CTACAACCTGCAATTTGAAG+GGG + Chr3:98667782-98667801 MsG0380017623.01.T01:intron 40.0%
CTAGTAAATGCACTGCGTTA+TGG + Chr3:98668378-98668397 MsG0380017623.01.T01:intron 40.0%
CTCCATCTGTAACGTTTACA+GGG + Chr3:98666910-98666929 MsG0380017623.01.T01:intron 40.0%
CTGGAATGGTGAAGTTAAAC+AGG + Chr3:98669636-98669655 MsG0380017623.01.T01:CDS 40.0%
GACAATTATTGTGAGACGGA+GGG - Chr3:98668582-98668601 None:intergenic 40.0%
GAGTCAAAGGTCAAAGAGAA+CGG - Chr3:98665130-98665149 None:intergenic 40.0%
GGAATGATGATCTCATAGTC+TGG + Chr3:98666064-98666083 MsG0380017623.01.T01:CDS 40.0%
GGATCTACTTTGACAACAAG+CGG - Chr3:98665541-98665560 None:intergenic 40.0%
GGCTGTGTAAAATAGGTGTA+AGG - Chr3:98666207-98666226 None:intergenic 40.0%
GTACAATACGTGCACGTAAA+TGG + Chr3:98670502-98670521 MsG0380017623.01.T01:three_prime_UTR 40.0%
TAATCGCGTTGCCATCTAAA+TGG - Chr3:98666440-98666459 None:intergenic 40.0%
TAGATGGAGACAATGGAGAA+GGG + Chr3:98667485-98667504 MsG0380017623.01.T01:intron 40.0%
TAGCATTGCACTTCCAACAA+AGG - Chr3:98665808-98665827 None:intergenic 40.0%
TCAAATTAGCCAATCCGAAC+AGG + Chr3:98665686-98665705 MsG0380017623.01.T01:intron 40.0%
TCGCAGACAGACATGAATAT+AGG - Chr3:98666369-98666388 None:intergenic 40.0%
TCGGAGAAAGATAGAATTGG+GGG - Chr3:98665193-98665212 None:intergenic 40.0%
TGATATGAGAACAGGGCAAA+TGG - Chr3:98669681-98669700 None:intergenic 40.0%
TGATGCCAAGTCTAGCAAAA+AGG + Chr3:98670226-98670245 MsG0380017623.01.T01:CDS 40.0%
TTAGTGAAGAGACGTTGTTC+TGG + Chr3:98668200-98668219 MsG0380017623.01.T01:intron 40.0%
TTCACCATTCCAGATGCAAT+GGG - Chr3:98669629-98669648 None:intergenic 40.0%
TTCCCTGTAAACGTTACAGA+TGG - Chr3:98666915-98666934 None:intergenic 40.0%
TTGCTGCGAAATGAAGAACA+CGG + Chr3:98665362-98665381 MsG0380017623.01.T01:exon 40.0%
TTTCTCTTCCACTGTTTGCA+GGG + Chr3:98665999-98666018 MsG0380017623.01.T01:intron 40.0%
TTTGTTCCCCTTCAAATTGC+AGG - Chr3:98667791-98667810 None:intergenic 40.0%
! ACCTGCGGTAATTGGATTTT+TGG + Chr3:98669600-98669619 MsG0380017623.01.T01:CDS 40.0%
! CATTCACATATTTTGCAGGC+TGG + Chr3:98667051-98667070 MsG0380017623.01.T01:intron 40.0%
! CCATTTTCAATGCTTGGACT+TGG + Chr3:98667334-98667353 MsG0380017623.01.T01:CDS 40.0%
! CTTGGTGATATTGTTATCCC+AGG + Chr3:98667352-98667371 MsG0380017623.01.T01:CDS 40.0%
! TGTTGTGATGAACTGGTTTC+AGG + Chr3:98669370-98669389 MsG0380017623.01.T01:CDS 40.0%
! TTAGTGAACACTGTGTTGAC+AGG + Chr3:98665867-98665886 MsG0380017623.01.T01:CDS 40.0%
! TTTTCTCTTCCACTGTTTGC+AGG + Chr3:98665998-98666017 MsG0380017623.01.T01:intron 40.0%
!! ACACTCTGAAATGTTGCACA+CGG + Chr3:98668330-98668349 MsG0380017623.01.T01:intron 40.0%
!! AGGCACAAAAAAAAGTGCCA+GGG - Chr3:98666271-98666290 None:intergenic 40.0%
!! ATGAGGGTTCTAAAAGGGAA+TGG + Chr3:98667814-98667833 MsG0380017623.01.T01:intron 40.0%
!! CCAAGTCCAAGCATTGAAAA+TGG - Chr3:98667337-98667356 None:intergenic 40.0%
!! CGCCATGAATTTGCTAGAAA+TGG + Chr3:98667587-98667606 MsG0380017623.01.T01:intron 40.0%
!! CGGCGTTGATTTGAAGAAAT+TGG - Chr3:98668124-98668143 None:intergenic 40.0%
!! GGCAGAAAGCGTTTAATAGA+TGG - Chr3:98666036-98666055 None:intergenic 40.0%
!! GTTCTTTGGATTAGCAGCAT+TGG - Chr3:98667933-98667952 None:intergenic 40.0%
!! TCATTTTTGTATGTTGCCGC+AGG + Chr3:98665502-98665521 MsG0380017623.01.T01:intron 40.0%
!! TCTTTGGATTAGCAGCATTG+GGG - Chr3:98667931-98667950 None:intergenic 40.0%
!! TGAATCAGAAGCACCGATAT+TGG - Chr3:98670272-98670291 None:intergenic 40.0%
!! TGCGGTAATTGGATTTTTGG+CGG + Chr3:98669603-98669622 MsG0380017623.01.T01:CDS 40.0%
!!! GTTAGGAGTGAAGAGTGTTT+TGG + Chr3:98670554-98670573 MsG0380017623.01.T01:three_prime_UTR 40.0%
!!! TGTGCGGAACCTTTTAAAAC+TGG - Chr3:98669992-98670011 None:intergenic 40.0%
!!! TTTTTGTGGCATTGGCTTTG+CGG + Chr3:98669267-98669286 MsG0380017623.01.T01:CDS 40.0%
AAAAGAGCAGGCTGACAAGA+GGG - Chr3:98669571-98669590 None:intergenic 45.0%
AGCTTAAGGTGGTCGAAATG+CGG + Chr3:98670103-98670122 MsG0380017623.01.T01:intron 45.0%
ATGGATCTAGTGTGCGAGAT+TGG - Chr3:98665337-98665356 None:intergenic 45.0%
ATTACAGTTCCCCATAGGAC+CGG - Chr3:98667635-98667654 None:intergenic 45.0%
CAATGTCAAACACCGACACA+TGG + Chr3:98668060-98668079 MsG0380017623.01.T01:intron 45.0%
CATCCAAACAGGGAGAAGAA+GGG - Chr3:98667707-98667726 None:intergenic 45.0%
CCGTCGAGATTGAGTTTACA+AGG + Chr3:98666225-98666244 MsG0380017623.01.T01:CDS 45.0%
CTTCACCATTCCAGATGCAA+TGG - Chr3:98669630-98669649 None:intergenic 45.0%
GAATAAGGGAAGGGATGGAA+TGG + Chr3:98667668-98667687 MsG0380017623.01.T01:intron 45.0%
GACAAACACAGTGATGCAAG+CGG - Chr3:98665584-98665603 None:intergenic 45.0%
GCCAAAAATCCAATTACCGC+AGG - Chr3:98669604-98669623 None:intergenic 45.0%
GCTTGCATCACTGTGTTTGT+CGG + Chr3:98665583-98665602 MsG0380017623.01.T01:CDS 45.0%
GTAGATGGAGACAATGGAGA+AGG + Chr3:98667484-98667503 MsG0380017623.01.T01:intron 45.0%
TAAATGCACTGCGTTATGGC+TGG + Chr3:98668382-98668401 MsG0380017623.01.T01:intron 45.0%
TAATGTTGCCCTGCAAACAG+TGG - Chr3:98666010-98666029 None:intergenic 45.0%
TATCCCTTCTTCTCCCTGTT+TGG + Chr3:98667701-98667720 MsG0380017623.01.T01:intron 45.0%
TATGCAGGAGACAATGTCCA+AGG + Chr3:98665764-98665783 MsG0380017623.01.T01:intron 45.0%
TCATCCAAACAGGGAGAAGA+AGG - Chr3:98667708-98667727 None:intergenic 45.0%
TCTCGACGGCTGTGTAAAAT+AGG - Chr3:98666214-98666233 None:intergenic 45.0%
TGTGAGGATTGTGGTCATTG+TGG + Chr3:98669460-98669479 MsG0380017623.01.T01:intron 45.0%
TTACACACGTGCGCTTATTC+AGG + Chr3:98668461-98668480 MsG0380017623.01.T01:intron 45.0%
TTCAAACTGTGCTGGGTAGA+TGG + Chr3:98667469-98667488 MsG0380017623.01.T01:intron 45.0%
TTGCCATGGAAACCCTGATT+GGG - Chr3:98670444-98670463 None:intergenic 45.0%
TTGCGGTTTGATGTGTCTAG+AGG + Chr3:98669284-98669303 MsG0380017623.01.T01:CDS 45.0%
TTTGCCATGGAAACCCTGAT+TGG - Chr3:98670445-98670464 None:intergenic 45.0%
! CATGTGTCGGTGTTTGACAT+TGG - Chr3:98668062-98668081 None:intergenic 45.0%
! GCTATGCGTTTTCCCTTTGT+TGG + Chr3:98665792-98665811 MsG0380017623.01.T01:CDS 45.0%
! GGTTTTCTTCACTCCTGTGA+TGG + Chr3:98667098-98667117 MsG0380017623.01.T01:CDS 45.0%
! TTTGACAACAAGCGGTGCTA+AGG - Chr3:98665533-98665552 None:intergenic 45.0%
!! ACATGGGAAGTACTTACCGT+TGG - Chr3:98665637-98665656 None:intergenic 45.0%
!! CAGGCACAAAAAAAAGTGCC+AGG - Chr3:98666272-98666291 None:intergenic 45.0%
!! CTTTGGATTAGCAGCATTGG+GGG - Chr3:98667930-98667949 None:intergenic 45.0%
!! GCAAGGCCATTTTCAATGCT+TGG + Chr3:98667328-98667347 MsG0380017623.01.T01:CDS 45.0%
!!! CTGGCACTTTTTTTTGTGCC+TGG + Chr3:98666270-98666289 MsG0380017623.01.T01:CDS 45.0%
!! AATATAATAATAATAATAGA+AGG - Chr3:98665285-98665304 None:intergenic 5.0%
AAACCCTGATTGGGCAGTCA+AGG - Chr3:98670435-98670454 None:intergenic 50.0%
ACTGTGATGTTCGGTTGTCG+AGG + Chr3:98668286-98668305 MsG0380017623.01.T01:intron 50.0%
AGGGAAGGGATGGAATGGAA+AGG + Chr3:98667673-98667692 MsG0380017623.01.T01:intron 50.0%
CAAAAGAGCAGGCTGACAAG+AGG - Chr3:98669572-98669591 None:intergenic 50.0%
CATTTCTGTGATTGCAGCGG+AGG + Chr3:98665311-98665330 MsG0380017623.01.T01:intron 50.0%
CCTGTTCTAACCGGTCCTAT+GGG + Chr3:98667622-98667641 MsG0380017623.01.T01:intron 50.0%
CGAAATGCGGTATGCTTGCT+AGG + Chr3:98670116-98670135 MsG0380017623.01.T01:intron 50.0%
CGTATTGTACCGAGAGAGAG+AGG - Chr3:98670492-98670511 None:intergenic 50.0%
CGTCAAACCAACTGCACCAA+CGG + Chr3:98665618-98665637 MsG0380017623.01.T01:CDS 50.0%
CTGTTCTAACCGGTCCTATG+GGG + Chr3:98667623-98667642 MsG0380017623.01.T01:intron 50.0%
GAAGTCATGCTGTGACAGCA+AGG - Chr3:98667548-98667567 None:intergenic 50.0%
GAATAAGGGCCTGTTCGGAT+TGG - Chr3:98665698-98665717 None:intergenic 50.0%
GAGAATGGCACCAGTCTTGA+AGG - Chr3:98666959-98666978 None:intergenic 50.0%
GGCTAGAGCATGCACTCAAA+CGG + Chr3:98668498-98668517 MsG0380017623.01.T01:intron 50.0%
GGGGAATGTTGTGAGGATTG+TGG + Chr3:98669451-98669470 MsG0380017623.01.T01:intron 50.0%
GTACTTACCGTTGGTGCAGT+TGG - Chr3:98665628-98665647 None:intergenic 50.0%
TCGTTTGGGGGAATGTTGTG+AGG + Chr3:98669444-98669463 MsG0380017623.01.T01:intron 50.0%
TCTCTTGGCTCCTTCAAGAC+TGG + Chr3:98666946-98666965 MsG0380017623.01.T01:CDS 50.0%
TGCTGGGTAGATGGAGACAA+TGG + Chr3:98667478-98667497 MsG0380017623.01.T01:intron 50.0%
TTTGCAACGCTGACCATCAC+AGG - Chr3:98667114-98667133 None:intergenic 50.0%
! CGGTGCTAAGGTTAAACCTG+CGG - Chr3:98665521-98665540 None:intergenic 50.0%
!! CAAGACTGGTGCCATTCTCT+TGG + Chr3:98666960-98666979 MsG0380017623.01.T01:CDS 50.0%
!! CGTTGGTGCAGTTGGTTTGA+CGG - Chr3:98665620-98665639 None:intergenic 50.0%
!! GTGCAGTTGGTTTGACGGAT+CGG - Chr3:98665615-98665634 None:intergenic 50.0%
ATGCTTGCGCAGAGCATACC+AGG - Chr3:98666291-98666310 None:intergenic 55.0%
CCCATAGGACCGGTTAGAAC+AGG - Chr3:98667625-98667644 None:intergenic 55.0%
CTCACCACTCCTCTCTCTCT+CGG + Chr3:98670480-98670499 MsG0380017623.01.T01:three_prime_UTR 55.0%
CTGCCCAATCAGGGTTTCCA+TGG + Chr3:98670438-98670457 MsG0380017623.01.T01:three_prime_UTR 55.0%
GCCTGTTCTAACCGGTCCTA+TGG + Chr3:98667621-98667640 MsG0380017623.01.T01:intron 55.0%
GCCTTGCAGAATCTGCTGTG+GGG - Chr3:98667315-98667334 None:intergenic 55.0%
GCTCCTTGACTGCCCAATCA+GGG + Chr3:98670429-98670448 MsG0380017623.01.T01:three_prime_UTR 55.0%
GGCCTTGCAGAATCTGCTGT+GGG - Chr3:98667316-98667335 None:intergenic 55.0%
GGCTGCACAGGTGATTCATG+TGG + Chr3:98669391-98669410 MsG0380017623.01.T01:intron 55.0%
GGGTCTTGCTTTCTGCATCC+AGG + Chr3:98666331-98666350 MsG0380017623.01.T01:CDS 55.0%
GGTATGCTCTGCGCAAGCAT+TGG + Chr3:98666291-98666310 MsG0380017623.01.T01:CDS 55.0%
TCCCCACAGCAGATTCTGCA+AGG + Chr3:98667311-98667330 MsG0380017623.01.T01:CDS 55.0%
TGATCGTACACGAGTCGCTG+AGG + Chr3:98669498-98669517 MsG0380017623.01.T01:intron 55.0%
TGCTCCTTGACTGCCCAATC+AGG + Chr3:98670428-98670447 MsG0380017623.01.T01:three_prime_UTR 55.0%
TGTACCGAGAGAGAGAGGAG+TGG - Chr3:98670487-98670506 None:intergenic 55.0%
! GAACTGGTTTCAGGCTGCAC+AGG + Chr3:98669379-98669398 MsG0380017623.01.T01:CDS 55.0%
! TGCGGTATGCTTGCTAGGTG+TGG + Chr3:98670121-98670140 MsG0380017623.01.T01:intron 55.0%
! TGGCCTTGCAGAATCTGCTG+TGG - Chr3:98667317-98667336 None:intergenic 55.0%
! TTTTGGCGGCCCATTGCATC+TGG + Chr3:98669617-98669636 MsG0380017623.01.T01:CDS 55.0%
CAGATCGTTGCTGCAGTCCC+TGG + Chr3:98666251-98666270 MsG0380017623.01.T01:CDS 60.0%
CGTACACGAGTCGCTGAGGT+TGG + Chr3:98669502-98669521 MsG0380017623.01.T01:intron 60.0%
GCACTGCGTTATGGCTGGAG+AGG + Chr3:98668387-98668406 MsG0380017623.01.T01:intron 60.0%
GCGGCCCATTGCATCTGGAA+TGG + Chr3:98669622-98669641 MsG0380017623.01.T01:CDS 60.0%
TAGATCCAGCGGCTCTGCTG+CGG - Chr3:98668361-98668380 None:intergenic 60.0%
!! TGCTCTGCGCAAGCATTGGC+TGG + Chr3:98666295-98666314 MsG0380017623.01.T01:CDS 60.0%
TGCAGCCGCAGCAGAGCCGC+TGG + Chr3:98668353-98668372 MsG0380017623.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 98665101 98670586 98665101 ID=MsG0380017623.01;Name=MsG0380017623.01
Chr3 mRNA 98665101 98670586 98665101 ID=MsG0380017623.01.T01;Parent=MsG0380017623.01;Name=MsG0380017623.01.T01;_AED=0.40;_eAED=0.40;_QI=190|1|1|1|0.81|0.83|12|330|341
Chr3 exon 98665101 98665246 98665101 ID=MsG0380017623.01.T01:exon:2548;Parent=MsG0380017623.01.T01
Chr3 exon 98665328 98665411 98665328 ID=MsG0380017623.01.T01:exon:2549;Parent=MsG0380017623.01.T01
Chr3 exon 98665524 98665639 98665524 ID=MsG0380017623.01.T01:exon:2550;Parent=MsG0380017623.01.T01
Chr3 exon 98665771 98665922 98665771 ID=MsG0380017623.01.T01:exon:2551;Parent=MsG0380017623.01.T01
Chr3 exon 98666020 98666105 98666020 ID=MsG0380017623.01.T01:exon:2552;Parent=MsG0380017623.01.T01
Chr3 exon 98666225 98666352 98666225 ID=MsG0380017623.01.T01:exon:2553;Parent=MsG0380017623.01.T01
Chr3 exon 98666931 98666981 98666931 ID=MsG0380017623.01.T01:exon:2554;Parent=MsG0380017623.01.T01
Chr3 exon 98667069 98667155 98667069 ID=MsG0380017623.01.T01:exon:2555;Parent=MsG0380017623.01.T01
Chr3 exon 98667304 98667373 98667304 ID=MsG0380017623.01.T01:exon:2556;Parent=MsG0380017623.01.T01
Chr3 exon 98669264 98669400 98669264 ID=MsG0380017623.01.T01:exon:2557;Parent=MsG0380017623.01.T01
Chr3 exon 98669580 98669657 98669580 ID=MsG0380017623.01.T01:exon:2558;Parent=MsG0380017623.01.T01
Chr3 exon 98670176 98670586 98670176 ID=MsG0380017623.01.T01:exon:2559;Parent=MsG0380017623.01.T01
Chr3 five_prime_UTR 98665101 98665246 98665101 ID=MsG0380017623.01.T01:five_prime_utr;Parent=MsG0380017623.01.T01
Chr3 five_prime_UTR 98665328 98665371 98665328 ID=MsG0380017623.01.T01:five_prime_utr;Parent=MsG0380017623.01.T01
Chr3 CDS 98665372 98665411 98665372 ID=MsG0380017623.01.T01:cds;Parent=MsG0380017623.01.T01
Chr3 CDS 98665524 98665639 98665524 ID=MsG0380017623.01.T01:cds;Parent=MsG0380017623.01.T01
Chr3 CDS 98665771 98665922 98665771 ID=MsG0380017623.01.T01:cds;Parent=MsG0380017623.01.T01
Chr3 CDS 98666020 98666105 98666020 ID=MsG0380017623.01.T01:cds;Parent=MsG0380017623.01.T01
Chr3 CDS 98666225 98666352 98666225 ID=MsG0380017623.01.T01:cds;Parent=MsG0380017623.01.T01
Chr3 CDS 98666931 98666981 98666931 ID=MsG0380017623.01.T01:cds;Parent=MsG0380017623.01.T01
Chr3 CDS 98667069 98667155 98667069 ID=MsG0380017623.01.T01:cds;Parent=MsG0380017623.01.T01
Chr3 CDS 98667304 98667373 98667304 ID=MsG0380017623.01.T01:cds;Parent=MsG0380017623.01.T01
Chr3 CDS 98669264 98669400 98669264 ID=MsG0380017623.01.T01:cds;Parent=MsG0380017623.01.T01
Chr3 CDS 98669580 98669657 98669580 ID=MsG0380017623.01.T01:cds;Parent=MsG0380017623.01.T01
Chr3 CDS 98670176 98670256 98670176 ID=MsG0380017623.01.T01:cds;Parent=MsG0380017623.01.T01
Chr3 three_prime_UTR 98670257 98670586 98670257 ID=MsG0380017623.01.T01:three_prime_utr;Parent=MsG0380017623.01.T01
Gene Sequence

>MsG0380017623.01.T01

ATGAAGAACACGGAACGAATTGCTAATTTGGCTTTATTAGGTTTAACCTTAGCACCGCTTGTTGTCAAAGTAGATCCAAACTTAAATGTTGTTTTAACCGCTTGCATCACTGTGTTTGTCGGATGTTACCGATCCGTCAAACCAACTGCACCAACGGAGACAATGTCCAAGGAACATGCTATGCGTTTTCCCTTTGTTGGAAGTGCAATGCTATTATCACTTTTCTTGCTATTTAAGTTTCTATCTAAGGACTTAGTGAACACTGTGTTGACAGGCTACTTCTTTGTACTCGGCATTGTTGCACTTTCGGCAACATTATTGCCATCTATTAAACGCTTTCTGCCAAATCATTGGAATGATGATCTCATAGTCTGGCGTTTTCCATATTTTCGATCCGTCGAGATTGAGTTTACAAGGTCACAGATCGTTGCTGCAGTCCCTGGCACTTTTTTTTGTGCCTGGTATGCTCTGCGCAAGCATTGGCTGGCAAATAACATATTGGGTCTTGCTTTCTGCATCCAGGGAATTGAAATGCTTTCTCTTGGCTCCTTCAAGACTGGTGCCATTCTCTTGGCTGGTCTTTTTGTATATGACATTTTCTGGGTTTTCTTCACTCCTGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATTAAGCTTTTGTTCCCCACAGCAGATTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGATATTGTTATCCCAGGTATTTTTGTGGCATTGGCTTTGCGGTTTGATGTGTCTAGAGGAAGACAGCCCCAGTATTTCAAGAGTGCATTTTTAGGATACACTTTTGGCTTGGTTCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGCCTGCTCTTTTGTATATTGTACCTGCGGTAATTGGATTTTTGGCGGCCCATTGCATCTGGAATGGTGAAGTTAAACAGTTGTTGGAGTTCGACGAGTCAAAGACTGCCGATTCATCTCAAGAAGAGAGTGATGCCAAGTCTAGCAAAAAGGATGAATAA

Protein sequence

>MsG0380017623.01.T01

MKNTERIANLALLGLTLAPLVVKVDPNLNVVLTACITVFVGCYRSVKPTAPTETMSKEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSATLLPSIKRFLPNHWNDDLIVWRFPYFRSVEIEFTRSQIVAAVPGTFFCAWYALRKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDIVIPGIFVALALRFDVSRGRQPQYFKSAFLGYTFGLVLTIVVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESKTADSSQEESDAKSSKKDE*