AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380018047.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018047.01.T01 MTR_3g117750 97.861 187 3 1 3 188 5 191 2.16e-133 371
MsG0380018047.01.T01 MTR_4g075290 86.471 170 23 0 9 178 3 172 1.16e-109 310
MsG0380018047.01.T01 MTR_7g116340 76.471 170 40 0 9 178 3 172 4.94e-97 278
MsG0380018047.01.T01 MTR_3g463900 67.665 167 54 0 11 177 35 201 1.86e-79 235
MsG0380018047.01.T01 MTR_3g070500 62.921 178 66 0 1 178 55 232 4.55e-79 235
MsG0380018047.01.T01 MTR_7g095750 63.743 171 61 1 9 178 6 176 9.63e-75 236
MsG0380018047.01.T01 MTR_8g079690 58.757 177 71 2 8 182 2 178 8.52e-68 211
MsG0380018047.01.T01 MTR_1g117010 60.819 171 56 3 11 177 78 241 2.48e-67 206
MsG0380018047.01.T01 MTR_1g117010 60.819 171 56 3 11 177 78 241 2.48e-67 206
MsG0380018047.01.T01 MTR_8g040180 58.857 175 67 4 6 177 13 185 2.26e-66 201
MsG0380018047.01.T01 MTR_1g085560 66.438 146 42 1 11 156 86 224 3.91e-66 203
MsG0380018047.01.T01 MTR_7g110980 58.523 176 55 3 11 180 97 260 8.20e-66 202
MsG0380018047.01.T01 MTR_4g086760 57.386 176 69 3 11 182 5 178 9.83e-64 199
MsG0380018047.01.T01 MTR_4g086760 57.386 176 69 3 11 182 5 178 1.85e-63 200
MsG0380018047.01.T01 MTR_4g086760 57.386 176 69 3 11 182 5 178 1.92e-63 199
MsG0380018047.01.T01 MTR_3g070500 65.672 134 46 0 1 134 55 188 6.94e-61 187
MsG0380018047.01.T01 MTR_4g073650 53.757 173 79 1 6 177 42 214 1.51e-60 188
MsG0380018047.01.T01 MTR_3g107660 51.445 173 83 1 9 180 9 181 8.07e-52 178
MsG0380018047.01.T01 MTR_3g070500 64.220 109 39 0 1 109 55 163 4.39e-46 149
MsG0380018047.01.T01 MTR_3g070500 63.889 108 39 0 1 108 55 162 8.13e-46 149
MsG0380018047.01.T01 MTR_1g011980 48.555 173 87 2 9 180 6 177 3.07e-44 156
MsG0380018047.01.T01 MTR_2g085075 52.027 148 55 5 23 168 470 603 2.91e-35 130
MsG0380018047.01.T01 MTR_7g105220 50.360 139 53 4 23 158 18 143 5.50e-35 121
MsG0380018047.01.T01 MTR_8g036015 48.611 144 58 5 23 163 9 139 4.24e-33 116
MsG0380018047.01.T01 MTR_3g085705 50.877 114 51 3 43 156 7 115 1.84e-29 105
MsG0380018047.01.T01 MTR_5g015500 48.529 136 58 4 24 158 314 438 2.01e-28 110
MsG0380018047.01.T01 MTR_5g015500 48.529 136 58 4 24 158 354 478 3.42e-28 110
MsG0380018047.01.T01 MTR_6g084140 38.824 170 83 6 23 182 9 167 1.16e-22 94.7
MsG0380018047.01.T01 MTR_6g084140 38.824 170 83 6 23 182 26 184 1.22e-22 94.7
MsG0380018047.01.T01 MTR_8g442420 38.235 170 84 6 23 182 9 167 1.40e-21 91.7
MsG0380018047.01.T01 MTR_2g023120 42.742 124 58 5 24 145 22 134 9.38e-18 80.5
MsG0380018047.01.T01 MTR_1g094065 35.897 156 66 7 24 170 89 219 3.24e-14 68.6
MsG0380018047.01.T01 MTR_1g035360 29.299 157 93 5 24 177 88 229 1.99e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018047.01.T01 AT2G16600 83.529 170 28 0 9 178 4 173 6.47e-106 301
MsG0380018047.01.T01 AT4G38740 80.473 169 33 0 10 178 4 172 2.54e-101 290
MsG0380018047.01.T01 AT2G21130 78.824 170 36 0 9 178 4 173 2.14e-100 287
MsG0380018047.01.T01 AT4G34870 79.412 170 35 0 9 178 3 172 1.59e-99 285
MsG0380018047.01.T01 AT3G56070 72.515 171 47 0 9 179 3 173 1.51e-90 262
MsG0380018047.01.T01 AT3G56070 72.515 171 47 0 9 179 3 173 1.51e-90 262
MsG0380018047.01.T01 AT2G16600 71.765 170 26 1 9 178 4 151 7.97e-84 244
MsG0380018047.01.T01 AT2G29960 67.066 167 55 0 11 177 33 199 1.64e-78 233
MsG0380018047.01.T01 AT2G29960 67.066 167 55 0 11 177 33 199 1.64e-78 233
MsG0380018047.01.T01 AT3G63400 66.667 171 56 1 9 178 6 176 9.16e-77 235
MsG0380018047.01.T01 AT5G58710 65.868 167 57 0 11 177 36 202 1.62e-76 228
MsG0380018047.01.T01 AT3G63400 66.667 171 56 1 9 178 6 176 4.95e-75 235
MsG0380018047.01.T01 AT3G63400 66.667 171 56 1 9 178 6 176 4.95e-75 235
MsG0380018047.01.T01 AT3G63400 66.667 171 56 1 9 178 6 176 4.95e-75 235
MsG0380018047.01.T01 AT5G13120 62.983 181 56 3 1 177 77 250 2.71e-74 224
MsG0380018047.01.T01 AT5G13120 62.983 181 56 3 1 177 81 254 4.80e-74 224
MsG0380018047.01.T01 AT3G55920 61.905 168 64 0 11 178 60 227 3.38e-73 220
MsG0380018047.01.T01 AT2G29960 62.275 167 53 1 11 177 33 189 2.15e-69 209
MsG0380018047.01.T01 AT3G62030 58.989 178 65 2 4 180 88 258 8.36e-69 210
MsG0380018047.01.T01 AT3G62030 58.989 178 65 2 4 180 89 259 9.31e-69 210
MsG0380018047.01.T01 AT3G62030 58.989 178 65 2 4 180 142 312 3.75e-68 210
MsG0380018047.01.T01 AT2G15790 60.920 174 66 2 11 182 5 178 5.79e-65 204
MsG0380018047.01.T01 AT2G38730 58.857 175 67 4 6 177 27 199 7.17e-65 198
MsG0380018047.01.T01 AT4G34960 54.070 172 78 1 11 181 48 219 2.07e-60 188
MsG0380018047.01.T01 AT3G22920 53.143 175 70 5 9 179 3 169 6.13e-54 171
MsG0380018047.01.T01 AT4G34960 55.645 124 55 0 11 134 48 171 8.90e-46 149
MsG0380018047.01.T01 AT4G32420 47.929 169 87 1 9 176 6 174 1.02e-45 160
MsG0380018047.01.T01 AT4G32420 47.929 169 87 1 9 176 6 174 1.02e-45 160
MsG0380018047.01.T01 AT4G32420 47.929 169 87 1 9 176 6 174 1.02e-45 160
MsG0380018047.01.T01 AT4G32420 47.929 169 87 1 9 176 6 174 1.02e-45 160
MsG0380018047.01.T01 AT4G32420 48.408 157 80 1 9 164 6 162 2.38e-42 151
MsG0380018047.01.T01 AT2G36130 48.649 148 62 5 23 169 18 152 1.82e-36 125
MsG0380018047.01.T01 AT3G44600 51.429 140 54 4 23 160 484 611 6.66e-34 126
MsG0380018047.01.T01 AT1G01940 48.252 143 60 5 23 163 9 139 7.30e-33 115
MsG0380018047.01.T01 AT5G67530 45.806 155 65 6 7 158 339 477 7.23e-28 109
MsG0380018047.01.T01 AT4G33060 45.600 125 55 5 24 146 22 135 1.22e-24 100
MsG0380018047.01.T01 AT1G53720 38.028 142 68 5 23 155 9 139 1.30e-20 87.8
MsG0380018047.01.T01 AT1G53720 38.028 142 68 5 23 155 9 139 2.20e-20 88.2

Find 83 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTCTCGTCGGCGAATT+TGG 0.117790 3:-103699920 None:intergenic
TGGGATTGGGGTTGGGGATG+GGG 0.189257 3:-103699648 None:intergenic
TTGGGATTGGGGTTGGGGAT+GGG 0.254630 3:-103699649 None:intergenic
AGACTTTGGGATTGGGGTTG+GGG 0.279401 3:-103699654 None:intergenic
AAGACTTTGGGATTGGGGTT+GGG 0.281079 3:-103699655 None:intergenic
GAGAAAGTTGGGTCCGGTTC+GGG 0.294795 3:+103700105 MsG0380018047.01.T01:CDS
TTTGGGATTGGGGTTGGGGA+TGG 0.340234 3:-103699650 None:intergenic
CTCTCCACCGGTACCATTAC+CGG 0.380312 3:-103699884 None:intergenic
GGCGAATTTGGACCCGTAGA+TGG 0.381308 3:-103699908 None:intergenic
TCGAAGAAGACTTTGGGATT+GGG 0.389727 3:-103699661 None:intergenic
GAAGACTTTGGGATTGGGGT+TGG 0.396057 3:-103699656 None:intergenic
TGAGAAAGTTGGGTCCGGTT+CGG 0.405741 3:+103700104 MsG0380018047.01.T01:CDS
GTGAAAGAGATTGAGAAAGT+TGG 0.416986 3:+103700093 MsG0380018047.01.T01:CDS
GTCGAAGAAGACTTTGGGAT+TGG 0.424528 3:-103699662 None:intergenic
GTCATGTCGAAGAAGACTTT+GGG 0.428350 3:-103699667 None:intergenic
GCAGAGTGCACGGAAGTTAT+CGG 0.432521 3:-103699755 None:intergenic
TGGTGAGGTGGTTGAAGGAA+TGG 0.433417 3:+103700065 MsG0380018047.01.T01:CDS
GCGAAGACGGAGTGGCTTGA+TGG 0.435031 3:+103700027 MsG0380018047.01.T01:CDS
CGAAGAAGACTTTGGGATTG+GGG 0.456798 3:-103699660 None:intergenic
CCTCCTTGACACATGAAATC+AGG 0.460761 3:-103699850 None:intergenic
GGTCATGTCGAAGAAGACTT+TGG 0.463837 3:-103699668 None:intergenic
GCACTCTGCACCGGGGAGAA+AGG 0.471854 3:+103699769 MsG0380018047.01.T01:CDS
ACCGGTGGAGAGTCCATCTA+CGG 0.473790 3:+103699895 MsG0380018047.01.T01:CDS
AACTTCCGTGCACTCTGCAC+CGG 0.478449 3:+103699760 MsG0380018047.01.T01:CDS
AGGTCCAGGTGTTCTTTCAA+TGG 0.486279 3:+103699957 MsG0380018047.01.T01:CDS
CTTCATATGCACGGCGAAGA+CGG 0.491522 3:+103700014 MsG0380018047.01.T01:CDS
GGCCCTGCTATATATGTTGT+TGG 0.492628 3:-103700191 None:intergenic
TGAAAGAGATTGAGAAAGTT+GGG 0.494450 3:+103700094 MsG0380018047.01.T01:CDS
GTTCTTTCAATGGCGAATGC+GGG 0.507071 3:+103699967 MsG0380018047.01.T01:CDS
CGAAGACGGAGTGGCTTGAT+GGG 0.510239 3:+103700028 MsG0380018047.01.T01:CDS
GGTGACTTCACCGCCGGTAA+TGG 0.512626 3:+103699871 MsG0380018047.01.T01:CDS
GATCATTATCATCAGAGAGT+TGG 0.513860 3:-103700164 None:intergenic
ATCAAGACCCACACAGGTCC+AGG 0.524358 3:+103699943 MsG0380018047.01.T01:CDS
CATGACCGTCGGAGACGAAC+CGG 0.524784 3:+103699684 MsG0380018047.01.T01:CDS
ACTTCCGTGCACTCTGCACC+GGG 0.526298 3:+103699761 MsG0380018047.01.T01:CDS
GGAAGATAGAGCCTTTGTAA+TGG 0.527764 3:-103699816 None:intergenic
GAGATTGAGAAAGTTGGGTC+CGG 0.536951 3:+103700099 MsG0380018047.01.T01:CDS
TTCGCCATTGAAAGAACACC+TGG 0.544494 3:-103699961 None:intergenic
TCTCCCCGGTGCAGAGTGCA+CGG 0.546941 3:-103699765 None:intergenic
GAACTGTGATCCATTCGTAC+CGG 0.549331 3:-103699992 None:intergenic
AACTGTGATCCATTCGTACC+GGG 0.549830 3:-103699991 None:intergenic
AATGCGGGACCCGGTACGAA+TGG 0.554826 3:+103699982 MsG0380018047.01.T01:CDS
TGTTCTTTCAATGGCGAATG+CGG 0.558234 3:+103699966 MsG0380018047.01.T01:CDS
TTCACCGCCGGTAATGGTAC+CGG 0.561434 3:+103699877 MsG0380018047.01.T01:CDS
GTCTTCTTCGACATGACCGT+CGG 0.574777 3:+103699673 MsG0380018047.01.T01:CDS
GGCGGTGAGAGGAGTGGTGT+CGG 0.577204 3:-103699734 None:intergenic
TCAATGGCGAATGCGGGACC+CGG 0.581965 3:+103699973 MsG0380018047.01.T01:CDS
TCCGACCGGTTCGTCTCCGA+CGG 0.586188 3:-103699689 None:intergenic
GGTGGTTGAAGGAATGGAGG+TGG 0.586389 3:+103700071 MsG0380018047.01.T01:CDS
CCGCAGTCAGCAATAACCAC+CGG 0.587692 3:-103700141 None:intergenic
TTCGGGGAAAACATCAAAGC+CGG 0.592489 3:+103700122 MsG0380018047.01.T01:CDS
ACCGGTCGGACGTATCGTCA+TGG 0.600041 3:+103699702 MsG0380018047.01.T01:CDS
CGGAAGTTATCGGCGGTGAG+AGG 0.605286 3:-103699745 None:intergenic
AGAAAGTTGGGTCCGGTTCG+GGG 0.607170 3:+103700106 MsG0380018047.01.T01:CDS
ATAGAGCCTTTGTAATGGAG+AGG 0.607462 3:-103699811 None:intergenic
CCCGTAGATGGACTCTCCAC+CGG 0.607666 3:-103699896 None:intergenic
GCTACCGAGTCCTTTCTCCC+CGG 0.607787 3:-103699779 None:intergenic
ATACCTGATTTCATGTGTCA+AGG 0.608102 3:+103699847 MsG0380018047.01.T01:CDS
ATCACAGTTCTTCATATGCA+CGG 0.610600 3:+103700005 MsG0380018047.01.T01:CDS
TGAGGTGGTTGAAGGAATGG+AGG 0.611761 3:+103700068 MsG0380018047.01.T01:CDS
GAGAAAGGACTCGGTAGCAG+TGG 0.612151 3:+103699784 MsG0380018047.01.T01:CDS
CAAGGAGGTGACTTCACCGC+CGG 0.614495 3:+103699865 MsG0380018047.01.T01:CDS
ACCGCCGGTAATGGTACCGG+TGG 0.624217 3:+103699880 MsG0380018047.01.T01:CDS
CCGGTGGAGAGTCCATCTAC+GGG 0.638547 3:+103699896 MsG0380018047.01.T01:CDS
AAGAACACCTGGACCTGTGT+GGG 0.644240 3:-103699950 None:intergenic
TCCATGACGATACGTCCGAC+CGG 0.645610 3:-103699703 None:intergenic
AATTTCATCAAGACCCACAC+AGG 0.645692 3:+103699937 MsG0380018047.01.T01:CDS
GGCAAGCCTCTCCATTACAA+AGG 0.646729 3:+103699805 MsG0380018047.01.T01:CDS
TGCACCGGGGAGAAAGGACT+CGG 0.648211 3:+103699775 MsG0380018047.01.T01:CDS
GGTCTTGATGAAATTCTCGT+CGG 0.653249 3:-103699929 None:intergenic
CCTGATTTCATGTGTCAAGG+AGG 0.663642 3:+103699850 MsG0380018047.01.T01:CDS
GTTATCGGCGGTGAGAGGAG+TGG 0.666243 3:-103699740 None:intergenic
TATGCACGGCGAAGACGGAG+TGG 0.669618 3:+103700019 MsG0380018047.01.T01:CDS
TGAAATCAGGTATGACGCGG+TGG 0.671849 3:-103699837 None:intergenic
GGGGAAAACATCAAAGCCGG+TGG 0.686265 3:+103700125 MsG0380018047.01.T01:CDS
CCGGTGGTTATTGCTGACTG+CGG 0.692364 3:+103700141 MsG0380018047.01.T01:CDS
GTGGCTTGATGGGAAACATG+TGG 0.698636 3:+103700038 MsG0380018047.01.T01:CDS
ACCGTCGGAGACGAACCGGT+CGG 0.705667 3:+103699688 MsG0380018047.01.T01:CDS
TCCACCGGTACCATTACCGG+CGG 0.707753 3:-103699881 None:intergenic
AAAGAACACCTGGACCTGTG+TGG 0.718700 3:-103699951 None:intergenic
ACATGAAATCAGGTATGACG+CGG 0.735409 3:-103699840 None:intergenic
GAGTGCACGGAAGTTATCGG+CGG 0.736092 3:-103699752 None:intergenic
CTTCCGTGCACTCTGCACCG+GGG 0.766706 3:+103699762 MsG0380018047.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
TGAAAGAGATTGAGAAAGTT+GGG + Chr3:103700094-103700113 MsG0380018047.01.T01:CDS 30.0%
ATACCTGATTTCATGTGTCA+AGG + Chr3:103699847-103699866 MsG0380018047.01.T01:CDS 35.0%
ATCACAGTTCTTCATATGCA+CGG + Chr3:103700005-103700024 MsG0380018047.01.T01:CDS 35.0%
GATCATTATCATCAGAGAGT+TGG - Chr3:103700167-103700186 None:intergenic 35.0%
GTGAAAGAGATTGAGAAAGT+TGG + Chr3:103700093-103700112 MsG0380018047.01.T01:CDS 35.0%
AATTTCATCAAGACCCACAC+AGG + Chr3:103699937-103699956 MsG0380018047.01.T01:CDS 40.0%
ACATGAAATCAGGTATGACG+CGG - Chr3:103699843-103699862 None:intergenic 40.0%
GGAAGATAGAGCCTTTGTAA+TGG - Chr3:103699819-103699838 None:intergenic 40.0%
GGTCTTGATGAAATTCTCGT+CGG - Chr3:103699932-103699951 None:intergenic 40.0%
GTCATGTCGAAGAAGACTTT+GGG - Chr3:103699670-103699689 None:intergenic 40.0%
TGTTCTTTCAATGGCGAATG+CGG + Chr3:103699966-103699985 MsG0380018047.01.T01:CDS 40.0%
! ATAGAGCCTTTGTAATGGAG+AGG - Chr3:103699814-103699833 None:intergenic 40.0%
! GATGGGAAACATGTGGTTTT+TGG + Chr3:103700045-103700064 MsG0380018047.01.T01:CDS 40.0%
!! TCGAAGAAGACTTTGGGATT+GGG - Chr3:103699664-103699683 None:intergenic 40.0%
!!! GAAACATGTGGTTTTTGGTG+AGG + Chr3:103700050-103700069 MsG0380018047.01.T01:CDS 40.0%
AACTGTGATCCATTCGTACC+GGG - Chr3:103699994-103700013 None:intergenic 45.0%
AGGTCCAGGTGTTCTTTCAA+TGG + Chr3:103699957-103699976 MsG0380018047.01.T01:CDS 45.0%
CCTCCTTGACACATGAAATC+AGG - Chr3:103699853-103699872 None:intergenic 45.0%
CCTGATTTCATGTGTCAAGG+AGG + Chr3:103699850-103699869 MsG0380018047.01.T01:CDS 45.0%
GAAATTCTCGTCGGCGAATT+TGG - Chr3:103699923-103699942 None:intergenic 45.0%
GAACTGTGATCCATTCGTAC+CGG - Chr3:103699995-103700014 None:intergenic 45.0%
GAGATTGAGAAAGTTGGGTC+CGG + Chr3:103700099-103700118 MsG0380018047.01.T01:CDS 45.0%
GGTCATGTCGAAGAAGACTT+TGG - Chr3:103699671-103699690 None:intergenic 45.0%
GTTCTTTCAATGGCGAATGC+GGG + Chr3:103699967-103699986 MsG0380018047.01.T01:CDS 45.0%
TTCGCCATTGAAAGAACACC+TGG - Chr3:103699964-103699983 None:intergenic 45.0%
TTCGGGGAAAACATCAAAGC+CGG + Chr3:103700122-103700141 MsG0380018047.01.T01:CDS 45.0%
! CTTTGATGTTTTCCCCGAAC+CGG - Chr3:103700121-103700140 None:intergenic 45.0%
!! AAGACTTTGGGATTGGGGTT+GGG - Chr3:103699658-103699677 None:intergenic 45.0%
!! CGAAGAAGACTTTGGGATTG+GGG - Chr3:103699663-103699682 None:intergenic 45.0%
!! GTCGAAGAAGACTTTGGGAT+TGG - Chr3:103699665-103699684 None:intergenic 45.0%
!!! ACATGTGGTTTTTGGTGAGG+TGG + Chr3:103700053-103700072 MsG0380018047.01.T01:CDS 45.0%
!!! GTTTTTGGTGAGGTGGTTGA+AGG + Chr3:103700060-103700079 MsG0380018047.01.T01:CDS 45.0%
AAAGAACACCTGGACCTGTG+TGG - Chr3:103699954-103699973 None:intergenic 50.0%
AAGAACACCTGGACCTGTGT+GGG - Chr3:103699953-103699972 None:intergenic 50.0%
CTTCATATGCACGGCGAAGA+CGG + Chr3:103700014-103700033 MsG0380018047.01.T01:CDS 50.0%
GCAGAGTGCACGGAAGTTAT+CGG - Chr3:103699758-103699777 None:intergenic 50.0%
GGCAAGCCTCTCCATTACAA+AGG + Chr3:103699805-103699824 MsG0380018047.01.T01:CDS 50.0%
GTCTTCTTCGACATGACCGT+CGG + Chr3:103699673-103699692 MsG0380018047.01.T01:CDS 50.0%
GTGGCTTGATGGGAAACATG+TGG + Chr3:103700038-103700057 MsG0380018047.01.T01:CDS 50.0%
TGAAATCAGGTATGACGCGG+TGG - Chr3:103699840-103699859 None:intergenic 50.0%
TGAGAAAGTTGGGTCCGGTT+CGG + Chr3:103700104-103700123 MsG0380018047.01.T01:CDS 50.0%
TGAGGTGGTTGAAGGAATGG+AGG + Chr3:103700068-103700087 MsG0380018047.01.T01:CDS 50.0%
TGGTGAGGTGGTTGAAGGAA+TGG + Chr3:103700065-103700084 MsG0380018047.01.T01:CDS 50.0%
!! AGACTTTGGGATTGGGGTTG+GGG - Chr3:103699657-103699676 None:intergenic 50.0%
!! GAAGACTTTGGGATTGGGGT+TGG - Chr3:103699659-103699678 None:intergenic 50.0%
AACTTCCGTGCACTCTGCAC+CGG + Chr3:103699760-103699779 MsG0380018047.01.T01:CDS 55.0%
ACCGGTGGAGAGTCCATCTA+CGG + Chr3:103699895-103699914 MsG0380018047.01.T01:CDS 55.0%
ATCAAGACCCACACAGGTCC+AGG + Chr3:103699943-103699962 MsG0380018047.01.T01:CDS 55.0%
CCGCAGTCAGCAATAACCAC+CGG - Chr3:103700144-103700163 None:intergenic 55.0%
CGAAGACGGAGTGGCTTGAT+GGG + Chr3:103700028-103700047 MsG0380018047.01.T01:CDS 55.0%
CTCTCCACCGGTACCATTAC+CGG - Chr3:103699887-103699906 None:intergenic 55.0%
GAGAAAGTTGGGTCCGGTTC+GGG + Chr3:103700105-103700124 MsG0380018047.01.T01:CDS 55.0%
GAGTGCACGGAAGTTATCGG+CGG - Chr3:103699755-103699774 None:intergenic 55.0%
GGCGAATTTGGACCCGTAGA+TGG - Chr3:103699911-103699930 None:intergenic 55.0%
GGGGAAAACATCAAAGCCGG+TGG + Chr3:103700125-103700144 MsG0380018047.01.T01:CDS 55.0%
GGTGGTTGAAGGAATGGAGG+TGG + Chr3:103700071-103700090 MsG0380018047.01.T01:CDS 55.0%
TCCATGACGATACGTCCGAC+CGG - Chr3:103699706-103699725 None:intergenic 55.0%
TTGGGATTGGGGTTGGGGAT+GGG - Chr3:103699652-103699671 None:intergenic 55.0%
! AGAAAGTTGGGTCCGGTTCG+GGG + Chr3:103700106-103700125 MsG0380018047.01.T01:CDS 55.0%
! CCGGTGGTTATTGCTGACTG+CGG + Chr3:103700141-103700160 MsG0380018047.01.T01:CDS 55.0%
! GAGAAAGGACTCGGTAGCAG+TGG + Chr3:103699784-103699803 MsG0380018047.01.T01:CDS 55.0%
! TTCACCGCCGGTAATGGTAC+CGG + Chr3:103699877-103699896 MsG0380018047.01.T01:CDS 55.0%
! TTTGGGATTGGGGTTGGGGA+TGG - Chr3:103699653-103699672 None:intergenic 55.0%
AATGCGGGACCCGGTACGAA+TGG + Chr3:103699982-103700001 MsG0380018047.01.T01:CDS 60.0%
ACCGGTCGGACGTATCGTCA+TGG + Chr3:103699702-103699721 MsG0380018047.01.T01:CDS 60.0%
ACTTCCGTGCACTCTGCACC+GGG + Chr3:103699761-103699780 MsG0380018047.01.T01:CDS 60.0%
CAAGGAGGTGACTTCACCGC+CGG + Chr3:103699865-103699884 MsG0380018047.01.T01:CDS 60.0%
CATGACCGTCGGAGACGAAC+CGG + Chr3:103699684-103699703 MsG0380018047.01.T01:CDS 60.0%
CCGGTGGAGAGTCCATCTAC+GGG + Chr3:103699896-103699915 MsG0380018047.01.T01:CDS 60.0%
CGGAAGTTATCGGCGGTGAG+AGG - Chr3:103699748-103699767 None:intergenic 60.0%
GCGAAGACGGAGTGGCTTGA+TGG + Chr3:103700027-103700046 MsG0380018047.01.T01:CDS 60.0%
GCTACCGAGTCCTTTCTCCC+CGG - Chr3:103699782-103699801 None:intergenic 60.0%
GGTGACTTCACCGCCGGTAA+TGG + Chr3:103699871-103699890 MsG0380018047.01.T01:CDS 60.0%
GTTATCGGCGGTGAGAGGAG+TGG - Chr3:103699743-103699762 None:intergenic 60.0%
TATGCACGGCGAAGACGGAG+TGG + Chr3:103700019-103700038 MsG0380018047.01.T01:CDS 60.0%
TCAATGGCGAATGCGGGACC+CGG + Chr3:103699973-103699992 MsG0380018047.01.T01:CDS 60.0%
TCCACCGGTACCATTACCGG+CGG - Chr3:103699884-103699903 None:intergenic 60.0%
TGCACCGGGGAGAAAGGACT+CGG + Chr3:103699775-103699794 MsG0380018047.01.T01:CDS 60.0%
TGGGATTGGGGTTGGGGATG+GGG - Chr3:103699651-103699670 None:intergenic 60.0%
! CCCGTAGATGGACTCTCCAC+CGG - Chr3:103699899-103699918 None:intergenic 60.0%
ACCGTCGGAGACGAACCGGT+CGG + Chr3:103699688-103699707 MsG0380018047.01.T01:CDS 65.0%
CTTCCGTGCACTCTGCACCG+GGG + Chr3:103699762-103699781 MsG0380018047.01.T01:CDS 65.0%
GCACTCTGCACCGGGGAGAA+AGG + Chr3:103699769-103699788 MsG0380018047.01.T01:CDS 65.0%
GGCGGTGAGAGGAGTGGTGT+CGG - Chr3:103699737-103699756 None:intergenic 65.0%
TCTCCCCGGTGCAGAGTGCA+CGG - Chr3:103699768-103699787 None:intergenic 65.0%
! ACCGCCGGTAATGGTACCGG+TGG + Chr3:103699880-103699899 MsG0380018047.01.T01:CDS 65.0%
!! TCCGACCGGTTCGTCTCCGA+CGG - Chr3:103699692-103699711 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 103699640 103700206 103699640 ID=MsG0380018047.01;Name=MsG0380018047.01
Chr3 mRNA 103699640 103700206 103699640 ID=MsG0380018047.01.T01;Parent=MsG0380018047.01;Name=MsG0380018047.01.T01;_AED=0.32;_eAED=0.32;_QI=0|-1|0|1|-1|1|1|0|188
Chr3 exon 103699640 103700206 103699640 ID=MsG0380018047.01.T01:exon:18523;Parent=MsG0380018047.01.T01
Chr3 CDS 103699640 103700206 103699640 ID=MsG0380018047.01.T01:cds;Parent=MsG0380018047.01.T01
Gene Sequence

>MsG0380018047.01.T01

ATGTCTAACCCCATCCCCAACCCCAATCCCAAAGTCTTCTTCGACATGACCGTCGGAGACGAACCGGTCGGACGTATCGTCATGGAACTTTACGCCGACACCACTCCTCTCACCGCCGATAACTTCCGTGCACTCTGCACCGGGGAGAAAGGACTCGGTAGCAGTGGCAAGCCTCTCCATTACAAAGGCTCTATCTTCCACCGCGTCATACCTGATTTCATGTGTCAAGGAGGTGACTTCACCGCCGGTAATGGTACCGGTGGAGAGTCCATCTACGGGTCCAAATTCGCCGACGAGAATTTCATCAAGACCCACACAGGTCCAGGTGTTCTTTCAATGGCGAATGCGGGACCCGGTACGAATGGATCACAGTTCTTCATATGCACGGCGAAGACGGAGTGGCTTGATGGGAAACATGTGGTTTTTGGTGAGGTGGTTGAAGGAATGGAGGTGGTGAAAGAGATTGAGAAAGTTGGGTCCGGTTCGGGGAAAACATCAAAGCCGGTGGTTATTGCTGACTGCGGCCAACTCTCTGATGATAATGATCTTAACCAACAACATATATAG

Protein sequence

>MsG0380018047.01.T01

MSNPIPNPNPKVFFDMTVGDEPVGRIVMELYADTTPLTADNFRALCTGEKGLGSSGKPLHYKGSIFHRVIPDFMCQGGDFTAGNGTGGESIYGSKFADENFIKTHTGPGVLSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGEVVEGMEVVKEIEKVGSGSGKTSKPVVIADCGQLSDDNDLNQQHI*