AlfalfaGEDB | MsG0380018047.01

M. sativa cultivar ZhongmuNo.1 / MsG0380018047.01

KEGG: K01802
GO: GO:0000413 GO:0003755 GO:0006457
PFAM: PF00160

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380018047.01.T01	QKK82849.1	100	188	0	0	1	188	1	188	1.32E-135	387

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380018047.01.T01	Q8W171	85.38	171	25	0	8	178	2	172	1.29E-108	310

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380018047.01.T01	A0A7G3TMU8	100.000	188	0	0	1	188	1	188	6.29e-136	387

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048313.01	MsG0380018047.01	0.819956	8.846579e-53	6.906922e-50
MsG0080048692.01	MsG0380018047.01	0.844297	8.249763e-59	1.325958e-55
MsG0080048699.01	MsG0380018047.01	0.800400	1.466947e-48	6.824037e-46
MsG0080048800.01	MsG0380018047.01	0.825095	5.648846e-54	5.099095e-51
MsG0080049076.01	MsG0380018047.01	0.830248	3.267851e-55	3.424309e-52
MsG0180001925.01	MsG0380018047.01	0.810189	1.304742e-50	7.812945e-48
MsG0180002099.01	MsG0380018047.01	0.803647	3.155077e-49	1.594005e-46
MsG0180002214.01	MsG0380018047.01	0.809707	1.656134e-50	9.793645e-48
MsG0180002426.01	MsG0380018047.01	0.847437	1.156986e-59	2.056407e-56
MsG0180002546.01	MsG0380018047.01	0.815258	1.013798e-51	6.954866e-49

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PPI

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Gene1	Gene2	Type
MsG0280006841.01	MsG0380018047.01	PPI
MsG0380015466.01	MsG0380018047.01	PPI
MsG0780041153.01	MsG0380018047.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380018047.01.T01	MTR_3g117750	97.861	187	3	1	3	188	5	191	2.16e-133	371
MsG0380018047.01.T01	MTR_4g075290	86.471	170	23	0	9	178	3	172	1.16e-109	310
MsG0380018047.01.T01	MTR_7g116340	76.471	170	40	0	9	178	3	172	4.94e-97	278
MsG0380018047.01.T01	MTR_3g463900	67.665	167	54	0	11	177	35	201	1.86e-79	235
MsG0380018047.01.T01	MTR_3g070500	62.921	178	66	0	1	178	55	232	4.55e-79	235
MsG0380018047.01.T01	MTR_7g095750	63.743	171	61	1	9	178	6	176	9.63e-75	236
MsG0380018047.01.T01	MTR_8g079690	58.757	177	71	2	8	182	2	178	8.52e-68	211
MsG0380018047.01.T01	MTR_1g117010	60.819	171	56	3	11	177	78	241	2.48e-67	206
MsG0380018047.01.T01	MTR_1g117010	60.819	171	56	3	11	177	78	241	2.48e-67	206
MsG0380018047.01.T01	MTR_8g040180	58.857	175	67	4	6	177	13	185	2.26e-66	201

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380018047.01.T01	AT2G16600	83.529	170	28	0	9	178	4	173	6.47e-106	301
MsG0380018047.01.T01	AT4G38740	80.473	169	33	0	10	178	4	172	2.54e-101	290
MsG0380018047.01.T01	AT2G21130	78.824	170	36	0	9	178	4	173	2.14e-100	287
MsG0380018047.01.T01	AT4G34870	79.412	170	35	0	9	178	3	172	1.59e-99	285
MsG0380018047.01.T01	AT3G56070	72.515	171	47	0	9	179	3	173	1.51e-90	262
MsG0380018047.01.T01	AT3G56070	72.515	171	47	0	9	179	3	173	1.51e-90	262
MsG0380018047.01.T01	AT2G16600	71.765	170	26	1	9	178	4	151	7.97e-84	244
MsG0380018047.01.T01	AT2G29960	67.066	167	55	0	11	177	33	199	1.64e-78	233
MsG0380018047.01.T01	AT2G29960	67.066	167	55	0	11	177	33	199	1.64e-78	233
MsG0380018047.01.T01	AT3G63400	66.667	171	56	1	9	178	6	176	9.16e-77	235

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Find 83 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACACCTGGACCTGTG+TGG	0.718700	3:-103699951	None:intergenic
AACTGTGATCCATTCGTACC+GGG	0.549830	3:-103699991	None:intergenic
AACTTCCGTGCACTCTGCAC+CGG	0.478449	3:+103699760	MsG0380018047.01.T01:CDS
AAGAACACCTGGACCTGTGT+GGG	0.644240	3:-103699950	None:intergenic
AAGACTTTGGGATTGGGGTT+GGG	0.281079	3:-103699655	None:intergenic
AATGCGGGACCCGGTACGAA+TGG	0.554826	3:+103699982	MsG0380018047.01.T01:CDS
AATTTCATCAAGACCCACAC+AGG	0.645692	3:+103699937	MsG0380018047.01.T01:CDS
ACATGAAATCAGGTATGACG+CGG	0.735409	3:-103699840	None:intergenic
ACCGCCGGTAATGGTACCGG+TGG	0.624217	3:+103699880	MsG0380018047.01.T01:CDS
ACCGGTCGGACGTATCGTCA+TGG	0.600041	3:+103699702	MsG0380018047.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAAGAGATTGAGAAAGTT+GGG	+	Chr3:103700094-103700113	MsG0380018047.01.T01:CDS	30.0%
ATACCTGATTTCATGTGTCA+AGG	+	Chr3:103699847-103699866	MsG0380018047.01.T01:CDS	35.0%
ATCACAGTTCTTCATATGCA+CGG	+	Chr3:103700005-103700024	MsG0380018047.01.T01:CDS	35.0%
GATCATTATCATCAGAGAGT+TGG	-	Chr3:103700167-103700186	None:intergenic	35.0%
GTGAAAGAGATTGAGAAAGT+TGG	+	Chr3:103700093-103700112	MsG0380018047.01.T01:CDS	35.0%
AATTTCATCAAGACCCACAC+AGG	+	Chr3:103699937-103699956	MsG0380018047.01.T01:CDS	40.0%
ACATGAAATCAGGTATGACG+CGG	-	Chr3:103699843-103699862	None:intergenic	40.0%
GGAAGATAGAGCCTTTGTAA+TGG	-	Chr3:103699819-103699838	None:intergenic	40.0%
GGTCTTGATGAAATTCTCGT+CGG	-	Chr3:103699932-103699951	None:intergenic	40.0%
GTCATGTCGAAGAAGACTTT+GGG	-	Chr3:103699670-103699689	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	103699640	103700206	103699640	ID=MsG0380018047.01;Name=MsG0380018047.01
Chr3	mRNA	103699640	103700206	103699640	ID=MsG0380018047.01.T01;Parent=MsG0380018047.01;Name=MsG0380018047.01.T01;_AED=0.32;_eAED=0.32;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|188
Chr3	exon	103699640	103700206	103699640	ID=MsG0380018047.01.T01:exon:18523;Parent=MsG0380018047.01.T01
Chr3	CDS	103699640	103700206	103699640	ID=MsG0380018047.01.T01:cds;Parent=MsG0380018047.01.T01

Gene Sequence

>MsG0380018047.01.T01

ATGTCTAACCCCATCCCCAACCCCAATCCCAAAGTCTTCTTCGACATGACCGTCGGAGACGAACCGGTCGGACGTATCGTCATGGAACTTTACGCCGACACCACTCCTCTCACCGCCGATAACTTCCGTGCACTCTGCACCGGGGAGAAAGGACTCGGTAGCAGTGGCAAGCCTCTCCATTACAAAGGCTCTATCTTCCACCGCGTCATACCTGATTTCATGTGTCAAGGAGGTGACTTCACCGCCGGTAATGGTACCGGTGGAGAGTCCATCTACGGGTCCAAATTCGCCGACGAGAATTTCATCAAGACCCACACAGGTCCAGGTGTTCTTTCAATGGCGAATGCGGGACCCGGTACGAATGGATCACAGTTCTTCATATGCACGGCGAAGACGGAGTGGCTTGATGGGAAACATGTGGTTTTTGGTGAGGTGGTTGAAGGAATGGAGGTGGTGAAAGAGATTGAGAAAGTTGGGTCCGGTTCGGGGAAAACATCAAAGCCGGTGGTTATTGCTGACTGCGGCCAACTCTCTGATGATAATGATCTTAACCAACAACATATATAG

Protein sequence

>MsG0380018047.01.T01

MSNPIPNPNPKVFFDMTVGDEPVGRIVMELYADTTPLTADNFRALCTGEKGLGSSGKPLHYKGSIFHRVIPDFMCQGGDFTAGNGTGGESIYGSKFADENFIKTHTGPGVLSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGEVVEGMEVVKEIEKVGSGSGKTSKPVVIADCGQLSDDNDLNQQHI*