AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002546.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002546.01.T01 MTR_1g048970 93.684 95 6 0 23 117 118 212 5.56e-63 191
MsG0180002546.01.T01 MTR_5g019990 41.935 93 54 0 23 115 94 186 2.86e-20 81.6
MsG0180002546.01.T01 MTR_5g019990 39.394 66 40 0 23 88 94 159 2.24e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002546.01.T01 AT5G51110 70.833 96 27 1 23 117 98 193 2.01e-47 150
MsG0180002546.01.T01 AT5G51110 70.833 96 27 1 23 117 125 220 4.27e-47 150
MsG0180002546.01.T01 AT1G29810 38.318 107 66 0 8 114 39 145 4.56e-24 90.1
MsG0180002546.01.T01 AT1G29810 42.391 92 53 0 23 114 93 184 9.24e-24 90.5

Find 24 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCATAACAAAATACTTTA+TGG 0.114079 1:+40189082 None:intergenic
GGTTGTTCTATGTGGATATT+TGG 0.159216 1:+40190553 None:intergenic
AGTTCTGCTCTGACTTGATT+TGG 0.343959 1:+40190532 None:intergenic
GTTGTTCTATGTGGATATTT+GGG 0.381813 1:+40190554 None:intergenic
ATCAAGTCAGAGCAGAACTA+TGG 0.396655 1:-40190528 MsG0180002546.01.T01:CDS
AGTGTTGACATGTATATAAA+TGG 0.401234 1:+40188916 None:intergenic
CATTATACTTAACAGACTTC+AGG 0.426078 1:+40188971 None:intergenic
CATCGAATAACACAAATTAG+TGG 0.438808 1:+40189039 None:intergenic
CTTGATTTGGTTGTTCTATG+TGG 0.454566 1:+40190545 None:intergenic
AAAATACTTTATGGAGCTCA+TGG 0.462531 1:+40189091 None:intergenic
TGTCCCAAGGAAAAGAGCTT+GGG 0.472741 1:-40189123 MsG0180002546.01.T01:CDS
TACTTAAACTTCGATGCTTG+TGG 0.499142 1:-40190651 MsG0180002546.01.T01:CDS
TTGTCCCAAGGAAAAGAGCT+TGG 0.523587 1:-40189124 MsG0180002546.01.T01:CDS
ATTACATTCTCCACGTTGGA+AGG 0.543447 1:-40192043 MsG0180002546.01.T01:intron
TTGACATGTATATAAATGGC+AGG 0.557696 1:+40188920 None:intergenic
GAACTATGGACCACATCCAT+TGG 0.559014 1:-40190514 MsG0180002546.01.T01:intron
TGGAGACTTGTGAATGATGA+AGG 0.574412 1:-40190676 MsG0180002546.01.T01:CDS
TCTACAGTTGTAGAGACTGC+AGG 0.582828 1:-40190583 MsG0180002546.01.T01:CDS
TGAGATTACATTCTCCACGT+TGG 0.634552 1:-40192047 MsG0180002546.01.T01:CDS
CATGTCAACACTTCTACATG+AGG 0.645567 1:-40188905 MsG0180002546.01.T01:three_prime_UTR
GTAAGGCTTACCAATGGATG+TGG 0.646838 1:+40190504 None:intergenic
AGACATCAGATCTTGTCCCA+AGG 0.671698 1:-40189136 MsG0180002546.01.T01:CDS
AGTGTTAAAGAGTCTCACAT+CGG 0.723475 1:+40192071 None:intergenic
AATTATATTACCTTCCAACG+TGG 0.743949 1:+40192033 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCTTTACAATTATAAAA+AGG + Chr1:40189708-40189727 None:intergenic 10.0%
!!! CATTTTGTTATAATTTTTTT+TGG - Chr1:40191114-40191133 MsG0180002546.01.T01:intron 10.0%
!!! TTTTTTTTTTTTTGCTATTA+AGG + Chr1:40189977-40189996 None:intergenic 10.0%
!! AAAATCAATCAATGATATTA+AGG + Chr1:40191422-40191441 None:intergenic 15.0%
!! AAATCAATCAATGATATTAA+GGG + Chr1:40191421-40191440 None:intergenic 15.0%
!! ATTCATAACAAAATACTTTA+TGG + Chr1:40191895-40191914 None:intergenic 15.0%
!!! AAACTTTGTATTTTTAAAAG+TGG + Chr1:40191363-40191382 None:intergenic 15.0%
!!! ATAAAAAAGCTATTTCAAAT+AGG - Chr1:40191164-40191183 MsG0180002546.01.T01:intron 15.0%
!!! ATTTTTAAAAGTGGATTTTT+TGG + Chr1:40191354-40191373 None:intergenic 15.0%
!!! TATAAAAAAAGTGTCTTTTA+AGG + Chr1:40190680-40190699 None:intergenic 15.0%
!!! TCATAATCAAATTAACATTT+TGG + Chr1:40189347-40189366 None:intergenic 15.0%
!!! TTTTAACAAAGAAATTTTCA+TGG - Chr1:40191028-40191047 MsG0180002546.01.T01:intron 15.0%
!!! TTTTTTAATCTAAAACAAAC+TGG - Chr1:40191395-40191414 MsG0180002546.01.T01:intron 15.0%
!!! TTTTTTTGTAACCATATTAT+TGG + Chr1:40190896-40190915 None:intergenic 15.0%
!! TAAAAAAAGCTATAACAAAC+TGG + Chr1:40190968-40190987 None:intergenic 20.0%
!! TATACTTTGTACCAATAATA+TGG - Chr1:40190882-40190901 MsG0180002546.01.T01:intron 20.0%
!! TTGGTAAAAGTTAAAATGAA+AGG + Chr1:40189270-40189289 None:intergenic 20.0%
!!! AATACTTAGAATGACATTTT+AGG + Chr1:40191090-40191109 None:intergenic 20.0%
!!! ACCACCAAATTAATTTTTTT+GGG + Chr1:40189030-40189049 None:intergenic 20.0%
!!! ATTTTAACTTTTACCAAACA+TGG - Chr1:40189273-40189292 MsG0180002546.01.T01:intron 20.0%
!!! TACCACCAAATTAATTTTTT+TGG + Chr1:40189031-40189050 None:intergenic 20.0%
!!! TATTTTCCAAATGAAAATAC+AGG + Chr1:40189758-40189777 None:intergenic 20.0%
!!! TTTGTTACTATTACCATTTT+CGG - Chr1:40189806-40189825 MsG0180002546.01.T01:intron 20.0%
! AAAAGTTTGTATAATCACAG+AGG - Chr1:40190921-40190940 MsG0180002546.01.T01:intron 25.0%
! AAAGTTTGTATAATCACAGA+GGG - Chr1:40190922-40190941 MsG0180002546.01.T01:intron 25.0%
! ACACTTCTATGAAATTTGTA+GGG + Chr1:40190219-40190238 None:intergenic 25.0%
! AGAAAAACGTTATAAGACAT+AGG - Chr1:40189162-40189181 MsG0180002546.01.T01:CDS 25.0%
! AGGTCCCAAAAAAATTAATT+TGG - Chr1:40189023-40189042 MsG0180002546.01.T01:three_prime_UTR 25.0%
! ATCATAAACATTACATTCAC+CGG + Chr1:40189527-40189546 None:intergenic 25.0%
! ATTGTAAAGATATTGCTTTC+AGG - Chr1:40189715-40189734 MsG0180002546.01.T01:intron 25.0%
! CTAATGAATAGATGACAATA+AGG + Chr1:40190064-40190083 None:intergenic 25.0%
! GTGTTATAAATAGCTTCTTA+TGG + Chr1:40190189-40190208 None:intergenic 25.0%
! TATTGGTACAAAGTATATAC+CGG + Chr1:40190879-40190898 None:intergenic 25.0%
! TGTACATATACTCTATTGAA+TGG + Chr1:40189435-40189454 None:intergenic 25.0%
! TTTGAATGATGCATAAAATC+CGG - Chr1:40189505-40189524 MsG0180002546.01.T01:intron 25.0%
!! ATTAATTTGGTGGTATTAGT+TGG - Chr1:40189036-40189055 MsG0180002546.01.T01:three_prime_UTR 25.0%
!! GAAGTTATTTCAAACTCATT+TGG + Chr1:40191311-40191330 None:intergenic 25.0%
!! GTTTTTCTTTTCATTCATGT+AGG - Chr1:40190267-40190286 MsG0180002546.01.T01:intron 25.0%
!! TCCCAAAAAAATTAATTTGG+TGG - Chr1:40189026-40189045 MsG0180002546.01.T01:three_prime_UTR 25.0%
!! TTTTCATTCATGTAGGTTTT+GGG - Chr1:40190274-40190293 MsG0180002546.01.T01:intron 25.0%
!!! AAACTCGTTTTTAGTGAAAT+CGG + Chr1:40191575-40191594 None:intergenic 25.0%
!!! AGTGTTGACATGTATATAAA+TGG + Chr1:40192061-40192080 None:intergenic 25.0%
!!! CAAGATGAGAACTTATTTTT+AGG + Chr1:40191725-40191744 None:intergenic 25.0%
!!! TTTGTGGTTAATTTGTTACA+AGG + Chr1:40189128-40189147 None:intergenic 25.0%
AAAATACTTTATGGAGCTCA+TGG + Chr1:40191886-40191905 None:intergenic 30.0%
AACTAACAGCTAAGAATGAT+AGG + Chr1:40190522-40190541 None:intergenic 30.0%
AATTATATTACCTTCCAACG+TGG + Chr1:40188944-40188963 None:intergenic 30.0%
ACTCAAAGTCTTCAAATTTG+AGG + Chr1:40189899-40189918 None:intergenic 30.0%
ACTCACAGATTACATACAAA+GGG + Chr1:40189211-40189230 None:intergenic 30.0%
AGAAAATTGACACACTTAAC+TGG + Chr1:40189628-40189647 None:intergenic 30.0%
ATAGATTTCATGAACCACTA+AGG - Chr1:40189459-40189478 MsG0180002546.01.T01:intron 30.0%
ATGAAAATACAGGTTCAACA+CGG + Chr1:40189748-40189767 None:intergenic 30.0%
CATCGAATAACACAAATTAG+TGG + Chr1:40191938-40191957 None:intergenic 30.0%
CATTATACTTAACAGACTTC+AGG + Chr1:40192006-40192025 None:intergenic 30.0%
CTTTGATAGACAAATGTTTG+TGG + Chr1:40189144-40189163 None:intergenic 30.0%
GACACTTCTATGAAATTTGT+AGG + Chr1:40190220-40190239 None:intergenic 30.0%
GATAATCAAATGTGCATTTG+AGG + Chr1:40189652-40189671 None:intergenic 30.0%
GTTGTTCTATGTGGATATTT+GGG + Chr1:40190423-40190442 None:intergenic 30.0%
TACTCACAGATTACATACAA+AGG + Chr1:40189212-40189231 None:intergenic 30.0%
TAGATTTCATGAACCACTAA+GGG - Chr1:40189460-40189479 MsG0180002546.01.T01:intron 30.0%
TGAATAGATGACAATAAGGA+AGG + Chr1:40190060-40190079 None:intergenic 30.0%
TTGACATGTATATAAATGGC+AGG + Chr1:40192057-40192076 None:intergenic 30.0%
! AGCTTTACATTTTCCATGTT+TGG + Chr1:40189289-40189308 None:intergenic 30.0%
! CTTTTCATTCATGTAGGTTT+TGG - Chr1:40190273-40190292 MsG0180002546.01.T01:intron 30.0%
! GAAAGGCTTCAATATTTTTC+AGG - Chr1:40191765-40191784 MsG0180002546.01.T01:intron 30.0%
! GCACATTTGATTATCAGTTT+TGG - Chr1:40189657-40189676 MsG0180002546.01.T01:intron 30.0%
! GTTGAACCTGTATTTTCATT+TGG - Chr1:40189749-40189768 MsG0180002546.01.T01:intron 30.0%
! TTGAAAGCATGACATTTGAA+AGG - Chr1:40191748-40191767 MsG0180002546.01.T01:intron 30.0%
!! TCAAATTAACATTTTGGTCG+AGG + Chr1:40189341-40189360 None:intergenic 30.0%
!!! AACTCGTTTTTAGTGAAATC+GGG + Chr1:40191574-40191593 None:intergenic 30.0%
AAACTTGAGACTTTGCTCAA+GGG + Chr1:40190762-40190781 None:intergenic 35.0%
AACAGCTAAGAATGATAGGA+GGG + Chr1:40190518-40190537 None:intergenic 35.0%
AACATGATATGCAAGTGTTC+AGG - Chr1:40189777-40189796 MsG0180002546.01.T01:intron 35.0%
AGAAGCTAGACAGTGTAAAA+TGG + Chr1:40190242-40190261 None:intergenic 35.0%
AGAGCAGAGTAGCATAAAAA+TGG + Chr1:40189567-40189586 None:intergenic 35.0%
AGGATCATTAACTCATGTTC+AGG + Chr1:40189321-40189340 None:intergenic 35.0%
AGTGTTAAAGAGTCTCACAT+CGG + Chr1:40188906-40188925 None:intergenic 35.0%
CAGATGATTATAATCTCTGC+CGG + Chr1:40190852-40190871 None:intergenic 35.0%
CTCACAGATTACATACAAAG+GGG + Chr1:40189210-40189229 None:intergenic 35.0%
GAACAGACATTATCCGAAAA+TGG + Chr1:40189822-40189841 None:intergenic 35.0%
GAGGAAAGAGGAATGATAAA+GGG + Chr1:40191507-40191526 None:intergenic 35.0%
GATAAATTCAAAGCCCTTAG+TGG + Chr1:40189476-40189495 None:intergenic 35.0%
GATTATAATCATCTGCAAGC+CGG - Chr1:40190857-40190876 MsG0180002546.01.T01:intron 35.0%
GATTGCAAGTTCTTAGTAGA+GGG - Chr1:40191458-40191477 MsG0180002546.01.T01:intron 35.0%
GCATAGCATATACATCTTCA+TGG + Chr1:40189413-40189432 None:intergenic 35.0%
GGTTGTTCTATGTGGATATT+TGG + Chr1:40190424-40190443 None:intergenic 35.0%
TAACAGCTAAGAATGATAGG+AGG + Chr1:40190519-40190538 None:intergenic 35.0%
TACATAATCTCCATTTGGGA+AGG + Chr1:40191529-40191548 None:intergenic 35.0%
TACTTAAACTTCGATGCTTG+TGG - Chr1:40190323-40190342 MsG0180002546.01.T01:intron 35.0%
TGATTGCAAGTTCTTAGTAG+AGG - Chr1:40191457-40191476 MsG0180002546.01.T01:intron 35.0%
TGCCTACATAATCTCCATTT+GGG + Chr1:40191533-40191552 None:intergenic 35.0%
TTACATTAACCGTTGTGAGA+TGG - Chr1:40190580-40190599 MsG0180002546.01.T01:CDS 35.0%
TTCCCAAATGGAGATTATGT+AGG - Chr1:40191528-40191547 MsG0180002546.01.T01:intron 35.0%
TTGTGAGATGGACATTGAAA+AGG - Chr1:40190592-40190611 MsG0180002546.01.T01:CDS 35.0%
TTTCAATGTCCATCTCACAA+CGG + Chr1:40190592-40190611 None:intergenic 35.0%
! AACTGCCTAGTTTACGTTTT+TGG + Chr1:40191621-40191640 None:intergenic 35.0%
! ACTGCCTAGTTTACGTTTTT+GGG + Chr1:40191620-40191639 None:intergenic 35.0%
! GGTACTACAAGTGTCTTTTA+GGG + Chr1:40190708-40190727 None:intergenic 35.0%
! TCAAAGCACTTGGTATATCT+AGG - Chr1:40189003-40189022 MsG0180002546.01.T01:three_prime_UTR 35.0%
! TGGTACTACAAGTGTCTTTT+AGG + Chr1:40190709-40190728 None:intergenic 35.0%
!! ATAAGAAGGGTACTGATGTA+AGG + Chr1:40190490-40190509 None:intergenic 35.0%
!! CTTGATTTGGTTGTTCTATG+TGG + Chr1:40190432-40190451 None:intergenic 35.0%
!!! ACTCGTTTTTAGTGAAATCG+GGG + Chr1:40191573-40191592 None:intergenic 35.0%
!!! AGGCTTCAATATTTTTCAGG+TGG - Chr1:40191768-40191787 MsG0180002546.01.T01:intron 35.0%
ACACTTGTAGTACCAATTGC+TGG - Chr1:40190714-40190733 MsG0180002546.01.T01:intron 40.0%
ACATAGGTTCAATTCTCGCT+AGG - Chr1:40189178-40189197 MsG0180002546.01.T01:CDS 40.0%
ACTGATGTAAGGCTTACCAA+TGG + Chr1:40190479-40190498 None:intergenic 40.0%
ATAATCTCCATTTGGGAAGG+AGG + Chr1:40191526-40191545 None:intergenic 40.0%
ATAGGAGGGAGTAGATAAGA+AGG + Chr1:40190504-40190523 None:intergenic 40.0%
ATCAAGTCAGAGCAGAACTA+TGG - Chr1:40190446-40190465 MsG0180002546.01.T01:intron 40.0%
ATTACATTCTCCACGTTGGA+AGG - Chr1:40188931-40188950 MsG0180002546.01.T01:three_prime_UTR 40.0%
ATTGCAGCTTAAAACCACCA+AGG - Chr1:40188961-40188980 MsG0180002546.01.T01:three_prime_UTR 40.0%
CAAACTTGAGACTTTGCTCA+AGG + Chr1:40190763-40190782 None:intergenic 40.0%
CACACCCAAAAACGTAAACT+AGG - Chr1:40191613-40191632 MsG0180002546.01.T01:intron 40.0%
CACTAGAGTTTGAGAACACT+GGG - Chr1:40191651-40191670 MsG0180002546.01.T01:intron 40.0%
CATGTCAACACTTCTACATG+AGG - Chr1:40192069-40192088 MsG0180002546.01.T01:CDS 40.0%
CTTAAAACCACCAAGGTTGA+TGG - Chr1:40188968-40188987 MsG0180002546.01.T01:three_prime_UTR 40.0%
GAGGGTTTAACACTCTATCA+TGG - Chr1:40191476-40191495 MsG0180002546.01.T01:intron 40.0%
GATTATGTAGGCACCAAACT+CGG - Chr1:40191540-40191559 MsG0180002546.01.T01:intron 40.0%
GGAGGAAAGAGGAATGATAA+AGG + Chr1:40191508-40191527 None:intergenic 40.0%
GGATAATGTCTGTTCGAACA+AGG - Chr1:40189827-40189846 MsG0180002546.01.T01:intron 40.0%
GTGCCTACATAATCTCCATT+TGG + Chr1:40191534-40191553 None:intergenic 40.0%
TAGGAGGGAGTAGATAAGAA+GGG + Chr1:40190503-40190522 None:intergenic 40.0%
TGAGATTACATTCTCCACGT+TGG - Chr1:40188927-40188946 MsG0180002546.01.T01:three_prime_UTR 40.0%
TGGAGACTTGTGAATGATGA+AGG - Chr1:40190298-40190317 MsG0180002546.01.T01:intron 40.0%
! AGTTCTGCTCTGACTTGATT+TGG + Chr1:40190445-40190464 None:intergenic 40.0%
! ATGTGACCAGCTAAGTTTTC+CGG - Chr1:40190830-40190849 MsG0180002546.01.T01:intron 40.0%
! CAAGTAAGGATCAAAGCACT+TGG - Chr1:40188993-40189012 MsG0180002546.01.T01:three_prime_UTR 40.0%
!!! CATTCATGTAGGTTTTGGGT+TGG - Chr1:40190278-40190297 MsG0180002546.01.T01:intron 40.0%
AAGGAAGTGACTCGATTCCA+AGG + Chr1:40189251-40189270 None:intergenic 45.0%
AGACATCAGATCTTGTCCCA+AGG - Chr1:40191838-40191857 MsG0180002546.01.T01:intron 45.0%
AGTCTCAAGTTTGTGCCTTG+TGG - Chr1:40190770-40190789 MsG0180002546.01.T01:intron 45.0%
AGTTCTACCAGACCAGCAAT+TGG + Chr1:40190729-40190748 None:intergenic 45.0%
CCTACCTAATAGCACTCCTT+CGG + Chr1:40189066-40189085 None:intergenic 45.0%
CTTACTTGCTCCATCAACCT+TGG + Chr1:40188981-40189000 None:intergenic 45.0%
GAACTATGGACCACATCCAT+TGG - Chr1:40190460-40190479 MsG0180002546.01.T01:intron 45.0%
GCACTAGAGTTTGAGAACAC+TGG - Chr1:40191650-40191669 MsG0180002546.01.T01:intron 45.0%
GGTATTAGTTGGAACACCGA+AGG - Chr1:40189047-40189066 MsG0180002546.01.T01:three_prime_UTR 45.0%
GTAAGGCTTACCAATGGATG+TGG + Chr1:40190473-40190492 None:intergenic 45.0%
GTCTCAAGTTTGTGCCTTGT+GGG - Chr1:40190771-40190790 MsG0180002546.01.T01:intron 45.0%
TCTACAGTTGTAGAGACTGC+AGG - Chr1:40190391-40190410 MsG0180002546.01.T01:intron 45.0%
TGAAGAGAAAGACAACGACG+AGG - Chr1:40189364-40189383 MsG0180002546.01.T01:intron 45.0%
TGTAGTACCAATTGCTGGTC+TGG - Chr1:40190719-40190738 MsG0180002546.01.T01:intron 45.0%
TGTCCCAAGGAAAAGAGCTT+GGG - Chr1:40191851-40191870 MsG0180002546.01.T01:intron 45.0%
TTAGCTGGTCACATTTAGCG+TGG + Chr1:40190824-40190843 None:intergenic 45.0%
TTGTCCCAAGGAAAAGAGCT+TGG - Chr1:40191850-40191869 MsG0180002546.01.T01:intron 45.0%
! AAGCCCAAGCTCTTTTCCTT+GGG + Chr1:40191857-40191876 None:intergenic 45.0%
! TAAGCCCAAGCTCTTTTCCT+TGG + Chr1:40191858-40191877 None:intergenic 45.0%
!! AACACCGAAGGAGTGCTATT+AGG - Chr1:40189059-40189078 MsG0180002546.01.T01:three_prime_UTR 45.0%
!! AAGGAGTGCTATTAGGTAGG+TGG - Chr1:40189066-40189085 MsG0180002546.01.T01:three_prime_UTR 45.0%
!! CAAGGTTGATGGAGCAAGTA+AGG - Chr1:40188979-40188998 MsG0180002546.01.T01:three_prime_UTR 45.0%
!! AGTTAAAAATAAAAAATAAT+AGG + Chr1:40190014-40190033 None:intergenic 5.0%
ACTCTTCAAAGCCGTGACCT+TGG - Chr1:40189231-40189250 MsG0180002546.01.T01:intron 50.0%
ACTTGCTCCATCAACCTTGG+TGG + Chr1:40188978-40188997 None:intergenic 50.0%
CCATTTGGGAAGGAGGAAAG+AGG + Chr1:40191519-40191538 None:intergenic 50.0%
CCTCTTTCCTCCTTCCCAAA+TGG - Chr1:40191516-40191535 MsG0180002546.01.T01:intron 50.0%
CCTTGTGGGTGGAAAAAACG+TGG - Chr1:40190785-40190804 MsG0180002546.01.T01:intron 50.0%
GTGACTCGATTCCAAGGTCA+CGG + Chr1:40189245-40189264 None:intergenic 50.0%
TCAAGTTTGTGCCTTGTGGG+TGG - Chr1:40190774-40190793 MsG0180002546.01.T01:intron 50.0%
TCTCTGCCGGAAAACTTAGC+TGG + Chr1:40190839-40190858 None:intergenic 50.0%
!! CCGAAGGAGTGCTATTAGGT+AGG - Chr1:40189063-40189082 MsG0180002546.01.T01:three_prime_UTR 50.0%
!!! CCACGTTTTTTCCACCCACA+AGG + Chr1:40190788-40190807 None:intergenic 50.0%
AACACTGGGCACCACTCTAG+TGG - Chr1:40191665-40191684 MsG0180002546.01.T01:intron 55.0%
TAGAGCCTAGATGTGCCGTG+AGG + Chr1:40191699-40191718 None:intergenic 55.0%
AGCCTAGATGTGCCGTGAGG+AGG + Chr1:40191696-40191715 None:intergenic 60.0%
AGGAGGTCCTGCCACTAGAG+TGG + Chr1:40191679-40191698 None:intergenic 60.0%
CTAGTGGCAGGACCTCCTCA+CGG - Chr1:40191681-40191700 MsG0180002546.01.T01:intron 60.0%
GACCTCCTCACGGCACATCT+AGG - Chr1:40191691-40191710 MsG0180002546.01.T01:intron 60.0%
TCGGGGCTTGCAACCGAGTT+TGG + Chr1:40191556-40191575 None:intergenic 60.0%
CTGGGCACCACTCTAGTGGC+AGG - Chr1:40191669-40191688 MsG0180002546.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 40188884 40192112 40188884 ID=MsG0180002546.01;Name=MsG0180002546.01
Chr1 mRNA 40188884 40192112 40188884 ID=MsG0180002546.01.T01;Parent=MsG0180002546.01;Name=MsG0180002546.01.T01;_AED=0.46;_eAED=0.53;_QI=0|0.5|0.66|1|1|1|3|234|117
Chr1 exon 40188884 40189209 40188884 ID=MsG0180002546.01.T01:exon:37075;Parent=MsG0180002546.01.T01
Chr1 exon 40190515 40190707 40190515 ID=MsG0180002546.01.T01:exon:37074;Parent=MsG0180002546.01.T01
Chr1 exon 40192044 40192112 40192044 ID=MsG0180002546.01.T01:exon:37073;Parent=MsG0180002546.01.T01
Chr1 CDS 40192044 40192112 40192044 ID=MsG0180002546.01.T01:cds;Parent=MsG0180002546.01.T01
Chr1 CDS 40190515 40190707 40190515 ID=MsG0180002546.01.T01:cds;Parent=MsG0180002546.01.T01
Chr1 CDS 40189118 40189209 40189118 ID=MsG0180002546.01.T01:cds;Parent=MsG0180002546.01.T01
Chr1 three_prime_UTR 40188884 40189117 40188884 ID=MsG0180002546.01.T01:three_prime_utr;Parent=MsG0180002546.01.T01
Gene Sequence

>MsG0180002546.01.T01

ATGTTCATGCATCTTTTGTCCGATGTGAGACTCTTTAACACTCTGAGATTACATTCTCCACGTTGGAAGGTTTTGGGTTGGAGACTTGTGAATGATGAAGGAGTACTTAAACTTCGATGCTTGTGGAAATTGAGAGATTTTAAATGTGCAGTTGAACTCATTAACAGAATCTCTACAGTTGTAGAGACTGCAGGACATTTCCCAAATATCCACATAGAACAACCAAATCAAGTCAGAGCAGAACTATGGACCACATCCATTGGTGGATTAAGTATGAATGATTTCATTGTAGCTGCAAAGATAGATGCAATACAGACATCAGATCTTGTCCCAAGGAAAAGAGCTTGGGCTTAA

Protein sequence

>MsG0180002546.01.T01

MFMHLLSDVRLFNTLRLHSPRWKVLGWRLVNDEGVLKLRCLWKLRDFKCAVELINRISTVVETAGHFPNIHIEQPNQVRAELWTTSIGGLSMNDFIVAAKIDAIQTSDLVPRKRAWA*