AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002099.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002099.01.T01 MTR_1g048970 91.509 212 15 1 1 209 1 212 3.65e-144 400
MsG0180002099.01.T01 MTR_5g019990 38.750 160 87 3 56 205 26 184 1.72e-29 108
MsG0180002099.01.T01 MTR_5g019990 36.296 135 75 3 56 180 26 159 3.40e-20 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002099.01.T01 AT5G51110 68.023 172 54 1 39 209 22 193 2.46e-86 253
MsG0180002099.01.T01 AT5G51110 63.492 189 67 2 23 209 32 220 1.12e-84 250
MsG0180002099.01.T01 AT1G29810 38.211 123 75 1 85 206 23 145 9.60e-29 105
MsG0180002099.01.T01 AT1G29810 38.211 123 75 1 85 206 62 184 2.21e-28 105

Find 65 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCATAACAAAATACTTTA+TGG 0.114079 1:+32887342 None:intergenic
AGAGAAAGAGCAGAGATATT+TGG 0.213526 1:+32890399 None:intergenic
GTTGCTTGGTGTTTGTTTAT+TGG 0.220068 1:+32890713 None:intergenic
CAGTTTGGAGAGAAAGTTAT+AGG 0.263947 1:-32890453 MsG0180002099.01.T01:CDS
TTGCTTGGTGTTTGTTTATT+GGG 0.271612 1:+32890714 None:intergenic
GAGAAAGAGCAGAGATATTT+GGG 0.293549 1:+32890400 None:intergenic
GGTTGTTCTATGTGGATATT+GGG 0.302096 1:+32888354 None:intergenic
AGTTCTGCTCTAACTTGATT+TGG 0.315123 1:+32888333 None:intergenic
TGGTTGTTCTATGTGGATAT+TGG 0.345309 1:+32888353 None:intergenic
AGGGTTGAGTTTGGTGGTGT+TGG 0.350306 1:+32890590 None:intergenic
ACTTCTTCCTTTGTGTTGCT+TGG 0.352685 1:+32890699 None:intergenic
GGGTTGAGTTTGGTGGTGTT+GGG 0.361314 1:+32890591 None:intergenic
GAGCAGAGATATTTGGGATA+AGG 0.364640 1:+32890406 None:intergenic
GGGGACTGTAAAGGTGAAAT+GGG 0.394511 1:+32890357 None:intergenic
ATTGAATGAAGGGTTGAGTT+TGG 0.402466 1:+32890581 None:intergenic
ATCAAGTTAGAGCAGAACTA+TGG 0.405443 1:-32888329 MsG0180002099.01.T01:CDS
ATTGAGAAGTTCAATTGAAT+GGG 0.418820 1:+32890745 None:intergenic
CATTATACTTAACAGACTTC+AGG 0.426078 1:+32887232 None:intergenic
GCTGAGTTGGAAAGTCAGTT+TGG 0.429565 1:-32890468 MsG0180002099.01.T01:CDS
GTAGTGTTTATTAAAATCAA+TGG 0.439509 1:-32890661 MsG0180002099.01.T01:exon
CATCAAATAACACAAATTAG+TGG 0.443216 1:+32887299 None:intergenic
TTTCAAAACCGTACTCCAAA+CGG 0.445296 1:-32890558 MsG0180002099.01.T01:CDS
CTTGATTTGGTTGTTCTATG+TGG 0.450240 1:+32888346 None:intergenic
AACTGACTTTCCAACTCAGC+TGG 0.450920 1:+32890471 None:intergenic
TTCAAAACCGTACTCCAAAC+GGG 0.454677 1:-32890557 MsG0180002099.01.T01:CDS
TGTTCCAAGGAAAAGAGCTT+GGG 0.455439 1:-32887383 MsG0180002099.01.T01:CDS
CTGTTAAGTATAATGATTCT+CGG 0.459163 1:-32887224 MsG0180002099.01.T01:three_prime_UTR
AGTGTTGACATGTATATAAA+TGG 0.460697 1:+32887177 None:intergenic
AAAATACTTTATGGAGCTCA+TGG 0.462531 1:+32887351 None:intergenic
CGAAGTGGAGAGAACCCGTT+TGG 0.465122 1:+32890543 None:intergenic
ATGTTACCTTTCTTATAAGC+TGG 0.467127 1:+32890313 None:intergenic
GGGACTGTAAAGGTGAAATG+GGG 0.478411 1:+32890358 None:intergenic
GATTGAGAAGTTCAATTGAA+TGG 0.483103 1:+32890744 None:intergenic
TGCTAACCAGCTTATAAGAA+AGG 0.486311 1:-32890319 MsG0180002099.01.T01:intron
GAGAGAACCCGTTTGGAGTA+CGG 0.488049 1:+32890550 None:intergenic
TTGTTCCAAGGAAAAGAGCT+TGG 0.495177 1:-32887384 MsG0180002099.01.T01:CDS
TACTTAAACTTCGATGCTTG+TGG 0.499142 1:-32888452 MsG0180002099.01.T01:CDS
CTTTCCAACTCAGCTGGGAA+AGG 0.499229 1:+32890477 None:intergenic
GGTTAGCATCCTCTTGAGAA+AGG 0.507506 1:+32890334 None:intergenic
AGACCCTTTCCCAGCTGAGT+TGG 0.518212 1:-32890481 MsG0180002099.01.T01:CDS
TTTCCAACTCAGCTGGGAAA+GGG 0.519124 1:+32890478 None:intergenic
GTTAGCATCCTCTTGAGAAA+GGG 0.520340 1:+32890335 None:intergenic
TTGGGATTTACATGTACCAC+AGG 0.532843 1:+32890609 None:intergenic
TGTTTGTTTATTGGGTTGTG+TGG 0.538375 1:+32890722 None:intergenic
GAAGGATAATAATACAAGCT+TGG 0.542503 1:+32890632 None:intergenic
TGGAGACTTGTGAATGATGA+AGG 0.574412 1:-32888477 MsG0180002099.01.T01:CDS
GAATGAAGGGTTGAGTTTGG+TGG 0.578352 1:+32890584 None:intergenic
TCTACAGTTGTAGAGACTGC+AGG 0.582828 1:-32888384 MsG0180002099.01.T01:CDS
TTGACATGTATATAAATGGC+TGG 0.583644 1:+32887181 None:intergenic
ACTGACTTTCCAACTCAGCT+GGG 0.590933 1:+32890472 None:intergenic
GAACTATGGACAACATCCAT+TGG 0.598647 1:-32888315 MsG0180002099.01.T01:intron
GTTGTTCTATGTGGATATTG+GGG 0.611420 1:+32888355 None:intergenic
GGACTGTAAAGGTGAAATGG+GGG 0.615160 1:+32890359 None:intergenic
AAACATCAGATCTTGTTCCA+AGG 0.615491 1:-32887396 MsG0180002099.01.T01:CDS
AGCATCCTCTTGAGAAAGGG+GGG 0.628847 1:+32890338 None:intergenic
TTAGCATCCTCTTGAGAAAG+GGG 0.629027 1:+32890336 None:intergenic
CAAACGGGTTCTCTCCACTT+CGG 0.636865 1:-32890542 MsG0180002099.01.T01:CDS
ACAAACACCAAGCAACACAA+AGG 0.641060 1:-32890706 MsG0180002099.01.T01:five_prime_UTR
TGTATTATTATCCTTCCCTG+TGG 0.642794 1:-32890625 MsG0180002099.01.T01:CDS
ATTTACATGTACCACAGGGA+AGG 0.643727 1:+32890614 None:intergenic
CATGTCAACACTGCTACATG+AGG 0.648038 1:-32887166 MsG0180002099.01.T01:three_prime_UTR
TAGCATCCTCTTGAGAAAGG+GGG 0.651673 1:+32890337 None:intergenic
TTGAGAAGTTCAATTGAATG+GGG 0.668371 1:+32890746 None:intergenic
TCGTTGTTAAAAGACCGAAG+TGG 0.708298 1:+32890528 None:intergenic
TGGGATTTACATGTACCACA+GGG 0.748864 1:+32890610 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGTTAAAATTAAAAATAAT+AGG + Chr1:32889165-32889184 None:intergenic 10.0%
!! AAGATATTTGTATAATCATA+AGG - Chr1:32890065-32890084 MsG0180002099.01.T01:intron 15.0%
!! ACTTGTAATAATTTGAAAAA+TGG - Chr1:32887669-32887688 MsG0180002099.01.T01:intron 15.0%
!! AGATATTTGTATAATCATAA+GGG - Chr1:32890066-32890085 MsG0180002099.01.T01:intron 15.0%
!! ATAAAACATCTAAATAGTTT+AGG + Chr1:32889185-32889204 None:intergenic 15.0%
!! ATATCTTTGCAATTATAAAA+AGG + Chr1:32888867-32888886 None:intergenic 15.0%
!! ATTCATAACAAAATACTTTA+TGG + Chr1:32890574-32890593 None:intergenic 15.0%
!!! CTACTTTAAAAAAAAAAAAC+TGG + Chr1:32888171-32888190 None:intergenic 15.0%
!!! TCATAATCAAATTTACATTT+TGG + Chr1:32888484-32888503 None:intergenic 15.0%
!!! TTTTTTTGTAACCATATTAT+TGG + Chr1:32890040-32890059 None:intergenic 15.0%
!! AGAAAAATGTTATAAGACAT+AGG - Chr1:32888296-32888315 MsG0180002099.01.T01:intron 20.0%
!! ATGAACATGTGTTTATAAAT+GGG + Chr1:32887928-32887947 None:intergenic 20.0%
!! GTAGTGTTTATTAAAATCAA+TGG - Chr1:32887252-32887271 MsG0180002099.01.T01:three_prime_UTR 20.0%
!! TATACTTTGTACCAATAATA+TGG - Chr1:32890026-32890045 MsG0180002099.01.T01:intron 20.0%
!!! AAATTGAGAGATTTTAAATG+CGG - Chr1:32889484-32889503 MsG0180002099.01.T01:intron 20.0%
!!! TATAAAATACGTGTCTTTTA+AGG + Chr1:32889822-32889841 None:intergenic 20.0%
!!! TATTTTCCAAATGAAAATAC+AGG + Chr1:32888917-32888936 None:intergenic 20.0%
! ATAACTGTCTACTAAAAAAG+TGG + Chr1:32887757-32887776 None:intergenic 25.0%
! ATCATAAACATTACATTCAC+CGG + Chr1:32888686-32888705 None:intergenic 25.0%
! ATTGAGAAGTTCAATTGAAT+GGG + Chr1:32887171-32887190 None:intergenic 25.0%
! CATCAAATAACACAAATTAG+TGG + Chr1:32890617-32890636 None:intergenic 25.0%
! CATGAACATGTGTTTATAAA+TGG + Chr1:32887929-32887948 None:intergenic 25.0%
! CTGTTAAGTATAATGATTCT+CGG - Chr1:32890689-32890708 MsG0180002099.01.T01:five_prime_UTR 25.0%
! GATAATCAAATGTTCATTTG+AGG + Chr1:32888811-32888830 None:intergenic 25.0%
! TCAATGATATTAAATGCAGT+AGG + Chr1:32890094-32890113 None:intergenic 25.0%
! TGAACATGTGTTTATAAATG+GGG + Chr1:32887927-32887946 None:intergenic 25.0%
! TTAAAGCATGACATTTGAAA+GGG - Chr1:32890428-32890447 MsG0180002099.01.T01:CDS 25.0%
! TTTAAGAAGCAAGTGTAAAA+TGG + Chr1:32889384-32889403 None:intergenic 25.0%
! TTTCAGTATTATATTAACCG+TGG - Chr1:32889715-32889734 MsG0180002099.01.T01:intron 25.0%
! TTTGAATGATGCATAAAATC+CGG - Chr1:32888664-32888683 MsG0180002099.01.T01:intron 25.0%
!! CTTTTATAGACAAATGTTAG+TGG + Chr1:32888278-32888297 None:intergenic 25.0%
!! GAACATTTGATTATCAGTTT+TGG - Chr1:32888816-32888835 MsG0180002099.01.T01:intron 25.0%
!! GTTTTTCTTTTCATTTATGC+AGG - Chr1:32889405-32889424 MsG0180002099.01.T01:intron 25.0%
!! TCTTTTAACAACGATTTCTT+GGG - Chr1:32887394-32887413 MsG0180002099.01.T01:CDS 25.0%
!! TTTAAAGCATGACATTTGAA+AGG - Chr1:32890427-32890446 MsG0180002099.01.T01:CDS 25.0%
!! TTTTCATTTATGCAGGTTTT+GGG - Chr1:32889412-32889431 MsG0180002099.01.T01:intron 25.0%
!!! ACCACCAAAACTAATTTTTT+TGG + Chr1:32888100-32888119 None:intergenic 25.0%
!!! AGTGTTGACATGTATATAAA+TGG + Chr1:32890739-32890758 None:intergenic 25.0%
!!! CAAGATGAGAACTTATTTTT+AGG + Chr1:32890404-32890423 None:intergenic 25.0%
!!! CCACCAAAACTAATTTTTTT+GGG + Chr1:32888099-32888118 None:intergenic 25.0%
!!! GGTAATACAAGTGTTTTTTA+AGG + Chr1:32889850-32889869 None:intergenic 25.0%
!!! GGTTTTGAAAATTGAATGAA+GGG + Chr1:32887345-32887364 None:intergenic 25.0%
!!! TCAAATTTACATTTTGGTCA+AGG + Chr1:32888478-32888497 None:intergenic 25.0%
AAAACTGAGCTAAGAATGAT+AGG + Chr1:32889660-32889679 None:intergenic 30.0%
AAAATACTTTATGGAGCTCA+TGG + Chr1:32890565-32890584 None:intergenic 30.0%
AACTATATTACCTTCCAACA+TGG + Chr1:32888001-32888020 None:intergenic 30.0%
ACACTTGTATTACCAATTGT+TGG - Chr1:32889856-32889875 MsG0180002099.01.T01:intron 30.0%
AGTGTTAAAGAATCTCACAT+CGG + Chr1:32887963-32887982 None:intergenic 30.0%
ATATGAACTATGAACCACTA+AGG - Chr1:32888618-32888637 MsG0180002099.01.T01:intron 30.0%
ATCATGATATACAAGTGTTC+AGG - Chr1:32888936-32888955 MsG0180002099.01.T01:intron 30.0%
ATGTTACCTTTCTTATAAGC+TGG + Chr1:32887603-32887622 None:intergenic 30.0%
ATTGCAAAGATATTGCTTTC+AGG - Chr1:32888874-32888893 MsG0180002099.01.T01:intron 30.0%
CATTATACTTAACAGACTTC+AGG + Chr1:32890684-32890703 None:intergenic 30.0%
GAACATGTGTTTATAAATGG+GGG + Chr1:32887926-32887945 None:intergenic 30.0%
GAAGGATAATAATACAAGCT+TGG + Chr1:32887284-32887303 None:intergenic 30.0%
GATTGAGAAGTTCAATTGAA+TGG + Chr1:32887172-32887191 None:intergenic 30.0%
GCATATAAGCTATAAAGACT+AGG - Chr1:32888072-32888091 MsG0180002099.01.T01:intron 30.0%
TATGAACTATGAACCACTAA+GGG - Chr1:32888619-32888638 MsG0180002099.01.T01:intron 30.0%
TATTGGTACAAAGTATATGC+CGG + Chr1:32890023-32890042 None:intergenic 30.0%
TGTACATATACTCTGCTTAA+TGG + Chr1:32888572-32888591 None:intergenic 30.0%
TTGACATGTATATAAATGGC+TGG + Chr1:32890735-32890754 None:intergenic 30.0%
TTGAGAAGTTCAATTGAATG+GGG + Chr1:32887170-32887189 None:intergenic 30.0%
TTGGTTAAAGTCAAGATGAA+AGG + Chr1:32888403-32888422 None:intergenic 30.0%
! AAGCTTAAATTTTCCTCGAT+TGG + Chr1:32888422-32888441 None:intergenic 30.0%
! CTTGTTAGTGTTGGAATATT+TGG - Chr1:32887713-32887732 MsG0180002099.01.T01:intron 30.0%
! CTTTTAACAACGATTTCTTG+GGG - Chr1:32887395-32887414 MsG0180002099.01.T01:CDS 30.0%
! CTTTTCATTTATGCAGGTTT+TGG - Chr1:32889411-32889430 MsG0180002099.01.T01:intron 30.0%
! GTCTTTTAACAACGATTTCT+TGG - Chr1:32887393-32887412 MsG0180002099.01.T01:CDS 30.0%
! GTTGAACCTGTATTTTCATT+TGG - Chr1:32888908-32888927 MsG0180002099.01.T01:intron 30.0%
! TTTTAACAACGATTTCTTGG+GGG - Chr1:32887396-32887415 MsG0180002099.01.T01:CDS 30.0%
!! AACTGTCGAGTTTAAGTTTT+TGG + Chr1:32890299-32890318 None:intergenic 30.0%
!! ACTGTCGAGTTTAAGTTTTT+GGG + Chr1:32890298-32890317 None:intergenic 30.0%
!! GGTCCCAAAAAAATTAGTTT+TGG - Chr1:32888093-32888112 MsG0180002099.01.T01:intron 30.0%
!! TTGCTTGGTGTTTGTTTATT+GGG + Chr1:32887202-32887221 None:intergenic 30.0%
!!! CCCAAAAAAATTAGTTTTGG+TGG - Chr1:32888096-32888115 MsG0180002099.01.T01:intron 30.0%
!!! CGGTTTTGAAAATTGAATGA+AGG + Chr1:32887346-32887365 None:intergenic 30.0%
!!! TATCACTTTTTCTCATGCAA+TGG + Chr1:32888601-32888620 None:intergenic 30.0%
!!! TTAGTTTTGGTGGTATTAGT+TGG - Chr1:32888106-32888125 MsG0180002099.01.T01:intron 30.0%
AAACATCAGATCTTGTTCCA+AGG - Chr1:32890517-32890536 MsG0180002099.01.T01:CDS 35.0%
ACTGAACTGAACCATTAATG+TGG - Chr1:32888199-32888218 MsG0180002099.01.T01:intron 35.0%
AGAGAAAGAGCAGAGATATT+TGG + Chr1:32887517-32887536 None:intergenic 35.0%
AGAGCAGAGTAGCATAAAAA+TGG + Chr1:32888726-32888745 None:intergenic 35.0%
AGGATCATTAACTCAAGTTC+AGG + Chr1:32888458-32888477 None:intergenic 35.0%
AGTTCTGCTCTAACTTGATT+TGG + Chr1:32889583-32889602 None:intergenic 35.0%
ATCAAGTTAGAGCAGAACTA+TGG - Chr1:32889584-32889603 MsG0180002099.01.T01:intron 35.0%
ATCTTGACTTTAACCAATCG+AGG - Chr1:32888406-32888425 MsG0180002099.01.T01:CDS 35.0%
ATTACATTCTCCATGTTGGA+AGG - Chr1:32887988-32888007 MsG0180002099.01.T01:intron 35.0%
ATTGAATGAAGGGTTGAGTT+TGG + Chr1:32887335-32887354 None:intergenic 35.0%
CAGGGTGAAAATGTGTTATA+TGG + Chr1:32889345-32889364 None:intergenic 35.0%
CAGTTTGGAGAGAAAGTTAT+AGG - Chr1:32887460-32887479 MsG0180002099.01.T01:intron 35.0%
GAGAAAGAGCAGAGATATTT+GGG + Chr1:32887516-32887535 None:intergenic 35.0%
GAGATGAAGATGTTTGAATC+AGG - Chr1:32887823-32887842 MsG0180002099.01.T01:intron 35.0%
GAGGAAAGAGGAATGATAAA+GGG + Chr1:32890186-32890205 None:intergenic 35.0%
GATAAATTCAAAGCCCTTAG+TGG + Chr1:32888635-32888654 None:intergenic 35.0%
GATTATAATCATCTGCAAGC+CGG - Chr1:32890001-32890020 MsG0180002099.01.T01:intron 35.0%
GCATAGCATATACATCTTCA+TGG + Chr1:32888550-32888569 None:intergenic 35.0%
GGACTTCTATGAAATTTGCA+GGG + Chr1:32889363-32889382 None:intergenic 35.0%
GGTTGTTCTATGTGGATATT+GGG + Chr1:32889562-32889581 None:intergenic 35.0%
GTTGTTCTATGTGGATATTG+GGG + Chr1:32889561-32889580 None:intergenic 35.0%
TACATAATCTCCATTAGGGA+AGG + Chr1:32890208-32890227 None:intergenic 35.0%
TACTTAAACTTCGATGCTTG+TGG - Chr1:32889461-32889480 MsG0180002099.01.T01:intron 35.0%
TAGTGAAATCAGAGTTTGCA+TGG + Chr1:32890242-32890261 None:intergenic 35.0%
TGAGATTACATTCTCCATGT+TGG - Chr1:32887984-32888003 MsG0180002099.01.T01:intron 35.0%
TGATACAGTCTGTTTGATGA+AGG - Chr1:32888975-32888994 MsG0180002099.01.T01:intron 35.0%
TGCTAACCAGCTTATAAGAA+AGG - Chr1:32887594-32887613 MsG0180002099.01.T01:intron 35.0%
TGCTCACAGATTACTTACAA+GGG + Chr1:32888345-32888364 None:intergenic 35.0%
TGGACTTCTATGAAATTTGC+AGG + Chr1:32889364-32889383 None:intergenic 35.0%
TGGTTGTTCTATGTGGATAT+TGG + Chr1:32889563-32889582 None:intergenic 35.0%
TGTATTATTATCCTTCCCTG+TGG - Chr1:32887288-32887307 MsG0180002099.01.T01:three_prime_UTR 35.0%
TTATATTAACCGTGGTGAGA+TGG - Chr1:32889723-32889742 MsG0180002099.01.T01:intron 35.0%
TTCCCTAATGGAGATTATGT+AGG - Chr1:32890207-32890226 MsG0180002099.01.T01:intron 35.0%
TTGGAACTGAACCACATTAA+TGG + Chr1:32888213-32888232 None:intergenic 35.0%
TTTCAAAACCGTACTCCAAA+CGG - Chr1:32887355-32887374 MsG0180002099.01.T01:three_prime_UTR 35.0%
! GAAAGGGTTCAATATTTTGC+AGG - Chr1:32890444-32890463 MsG0180002099.01.T01:CDS 35.0%
! TGTTTGTTTATTGGGTTGTG+TGG + Chr1:32887194-32887213 None:intergenic 35.0%
!! CTTGATTTGGTTGTTCTATG+TGG + Chr1:32889570-32889589 None:intergenic 35.0%
!! GGTTGATTTGTTACAGGTAT+GGG + Chr1:32888257-32888276 None:intergenic 35.0%
!! GTTAGTGGTTGATTTGTTAC+AGG + Chr1:32888263-32888282 None:intergenic 35.0%
!! GTTGCTTGGTGTTTGTTTAT+TGG + Chr1:32887203-32887222 None:intergenic 35.0%
!! TGGTTGATTTGTTACAGGTA+TGG + Chr1:32888258-32888277 None:intergenic 35.0%
!! TTCATGGTTCTAAACTGCAT+TGG + Chr1:32888232-32888251 None:intergenic 35.0%
!!! TTACCCTGTTTTAGAAATCG+TGG - Chr1:32887853-32887872 MsG0180002099.01.T01:intron 35.0%
ACAAACACCAAGCAACACAA+AGG - Chr1:32887207-32887226 MsG0180002099.01.T01:three_prime_UTR 40.0%
ACATAGGTTCAATTCTCGCT+AGG - Chr1:32888312-32888331 MsG0180002099.01.T01:intron 40.0%
ACTGAGCTAAGAATGATAGG+AGG + Chr1:32889657-32889676 None:intergenic 40.0%
ATAATCTCCATTAGGGAAGG+AGG + Chr1:32890205-32890224 None:intergenic 40.0%
ATAGCAGGTCACATTTAGTG+TGG + Chr1:32889968-32889987 None:intergenic 40.0%
ATAGGAGGGAGTAGATAAGA+AGG + Chr1:32889642-32889661 None:intergenic 40.0%
ATCAGAGTTTGCATGGAGTT+TGG + Chr1:32890235-32890254 None:intergenic 40.0%
ATCTCACATCGGACAAAAGA+TGG + Chr1:32887952-32887971 None:intergenic 40.0%
ATTTACATGTACCACAGGGA+AGG + Chr1:32887302-32887321 None:intergenic 40.0%
CACTAGAGTTTGAGAACACT+GGG - Chr1:32890329-32890348 MsG0180002099.01.T01:CDS 40.0%
CGCCTACATAATCTCCATTA+GGG + Chr1:32890212-32890231 None:intergenic 40.0%
CTGAGCTAAGAATGATAGGA+GGG + Chr1:32889656-32889675 None:intergenic 40.0%
GAACTATGGACAACATCCAT+TGG - Chr1:32889598-32889617 MsG0180002099.01.T01:intron 40.0%
GATCTAAGCCTAGTTGTACT+CGG + Chr1:32889883-32889902 None:intergenic 40.0%
GATTGCAAGTTCTCAGTAGA+GGG - Chr1:32890138-32890157 MsG0180002099.01.T01:intron 40.0%
GCTCACAGATTACTTACAAG+GGG + Chr1:32888344-32888363 None:intergenic 40.0%
GGAGGAAAGAGGAATGATAA+AGG + Chr1:32890187-32890206 None:intergenic 40.0%
GTACTTGAGACTTTGCTCAA+GGG + Chr1:32889905-32889924 None:intergenic 40.0%
GTGCTCACAGATTACTTACA+AGG + Chr1:32888346-32888365 None:intergenic 40.0%
GTTAGCATCCTCTTGAGAAA+GGG + Chr1:32887581-32887600 None:intergenic 40.0%
TAGGAGGGAGTAGATAAGAA+GGG + Chr1:32889641-32889660 None:intergenic 40.0%
TATTCCAACACTAACAAGCG+TGG + Chr1:32887711-32887730 None:intergenic 40.0%
TCGTTGTTAAAAGACCGAAG+TGG + Chr1:32887388-32887407 None:intergenic 40.0%
TGATTGCAAGTTCTCAGTAG+AGG - Chr1:32890137-32890156 MsG0180002099.01.T01:intron 40.0%
TGGAGACTTGTGAATGATGA+AGG - Chr1:32889436-32889455 MsG0180002099.01.T01:intron 40.0%
TGGGATTTACATGTACCACA+GGG + Chr1:32887306-32887325 None:intergenic 40.0%
TGTTCCAAGGAAAAGAGCTT+GGG - Chr1:32890530-32890549 MsG0180002099.01.T01:CDS 40.0%
TTAGCATCCTCTTGAGAAAG+GGG + Chr1:32887580-32887599 None:intergenic 40.0%
TTCAAAACCGTACTCCAAAC+GGG - Chr1:32887356-32887375 MsG0180002099.01.T01:three_prime_UTR 40.0%
TTGGGATTTACATGTACCAC+AGG + Chr1:32887307-32887326 None:intergenic 40.0%
TTGTTCCAAGGAAAAGAGCT+TGG - Chr1:32890529-32890548 MsG0180002099.01.T01:CDS 40.0%
! AACGATTTCTTGGGGGATTT+TGG - Chr1:32887403-32887422 MsG0180002099.01.T01:CDS 40.0%
! ACCTGACAAACCTGTTTTGT+TGG + Chr1:32887895-32887914 None:intergenic 40.0%
! ACTTCTTCCTTTGTGTTGCT+TGG + Chr1:32887217-32887236 None:intergenic 40.0%
! AGGGTTCAATATTTTGCAGG+TGG - Chr1:32890447-32890466 MsG0180002099.01.T01:CDS 40.0%
! ATGTGACCTGCTATGTTTTC+TGG - Chr1:32889974-32889993 MsG0180002099.01.T01:intron 40.0%
! CAAGTAAGGATCAAAGCACT+TGG - Chr1:32888050-32888069 MsG0180002099.01.T01:intron 40.0%
! GAGCAGAGATATTTGGGATA+AGG + Chr1:32887510-32887529 None:intergenic 40.0%
! TTTTCAATGCCATCTCACCA+CGG + Chr1:32889735-32889754 None:intergenic 40.0%
!! AAACCTGTTTTGTTGGGTTG+TGG + Chr1:32887888-32887907 None:intergenic 40.0%
!! AACACAGGAGTACTATTAGG+AGG - Chr1:32888129-32888148 MsG0180002099.01.T01:intron 40.0%
!! AGAGGGTTTTAGCACTATCA+TGG - Chr1:32890155-32890174 MsG0180002099.01.T01:intron 40.0%
!! ATAAGAAGGGTACTGGTGTA+AGG + Chr1:32889628-32889647 None:intergenic 40.0%
!! CCTGACAAACCTGTTTTGTT+GGG + Chr1:32887894-32887913 None:intergenic 40.0%
!! CGACCACGATTTCTAAAACA+GGG + Chr1:32887859-32887878 None:intergenic 40.0%
!! TGGAACACAGGAGTACTATT+AGG - Chr1:32888126-32888145 MsG0180002099.01.T01:intron 40.0%
!!! CATTTATGCAGGTTTTGGGT+TGG - Chr1:32889416-32889435 MsG0180002099.01.T01:intron 40.0%
!!! CCTGTTTTAGAAATCGTGGT+CGG - Chr1:32887857-32887876 MsG0180002099.01.T01:intron 40.0%
!!! CTGTTTTAGAAATCGTGGTC+GGG - Chr1:32887858-32887877 MsG0180002099.01.T01:intron 40.0%
AAGGAAGTGACTCCATTCCA+AGG + Chr1:32888384-32888403 None:intergenic 45.0%
ACTGGTGTAAGGCTTACCAA+TGG + Chr1:32889617-32889636 None:intergenic 45.0%
CAAAACAGGTTTGTCAGGTG+AGG - Chr1:32887896-32887915 MsG0180002099.01.T01:intron 45.0%
CATGTCAACACTGCTACATG+AGG - Chr1:32890747-32890766 MsG0180002099.01.T01:five_prime_UTR 45.0%
CCCAACAAAACAGGTTTGTC+AGG - Chr1:32887891-32887910 MsG0180002099.01.T01:intron 45.0%
CGTACTTGAGACTTTGCTCA+AGG + Chr1:32889906-32889925 None:intergenic 45.0%
CTACCACAACCCAACAAAAC+AGG - Chr1:32887882-32887901 MsG0180002099.01.T01:intron 45.0%
CTGAAAACCACCAAGGTTGA+TGG - Chr1:32888025-32888044 MsG0180002099.01.T01:intron 45.0%
CTTACTTGCTCCATCAACCT+TGG + Chr1:32888038-32888057 None:intergenic 45.0%
CTTGTGGGTGGAAAAAAACG+TGG - Chr1:32889929-32889948 MsG0180002099.01.T01:intron 45.0%
GAATGAAGGGTTGAGTTTGG+TGG + Chr1:32887332-32887351 None:intergenic 45.0%
GCACTAGAGTTTGAGAACAC+TGG - Chr1:32890328-32890347 MsG0180002099.01.T01:CDS 45.0%
GCGCCTACATAATCTCCATT+AGG + Chr1:32890213-32890232 None:intergenic 45.0%
GGACTGTAAAGGTGAAATGG+GGG + Chr1:32887557-32887576 None:intergenic 45.0%
GGGACTGTAAAGGTGAAATG+GGG + Chr1:32887558-32887577 None:intergenic 45.0%
GGGGACTGTAAAGGTGAAAT+GGG + Chr1:32887559-32887578 None:intergenic 45.0%
GGTGGTATTAGTTGGAACAC+AGG - Chr1:32888114-32888133 MsG0180002099.01.T01:intron 45.0%
GGTTAGCATCCTCTTGAGAA+AGG + Chr1:32887582-32887601 None:intergenic 45.0%
GTTACAGGTATGGGTGTTCA+TGG + Chr1:32888248-32888267 None:intergenic 45.0%
GTTGTACTCGGTCCAACAAT+TGG + Chr1:32889871-32889890 None:intergenic 45.0%
GTTGTAGCTGAAAACCACCA+AGG - Chr1:32888018-32888037 MsG0180002099.01.T01:intron 45.0%
TAGCATCCTCTTGAGAAAGG+GGG + Chr1:32887579-32887598 None:intergenic 45.0%
TCTACAGTTGTAGAGACTGC+AGG - Chr1:32889529-32889548 MsG0180002099.01.T01:intron 45.0%
TGAAGAGTAAGAAGACGACG+AGG - Chr1:32888501-32888520 MsG0180002099.01.T01:intron 45.0%
TTGTTGGACCGAGTACAACT+AGG - Chr1:32889872-32889891 MsG0180002099.01.T01:intron 45.0%
TTTCCAACTCAGCTGGGAAA+GGG + Chr1:32887438-32887457 None:intergenic 45.0%
! AACTGACTTTCCAACTCAGC+TGG + Chr1:32887445-32887464 None:intergenic 45.0%
! ACTGACTTTCCAACTCAGCT+GGG + Chr1:32887444-32887463 None:intergenic 45.0%
! GCTGAGTTGGAAAGTCAGTT+TGG - Chr1:32887445-32887464 MsG0180002099.01.T01:CDS 45.0%
! GGAGTACTATTAGGAGGTTC+AGG - Chr1:32888135-32888154 MsG0180002099.01.T01:intron 45.0%
! GGAGTAGATAAGAAGGGTAC+TGG + Chr1:32889635-32889654 None:intergenic 45.0%
! GTAACCACGCTTGTTAGTGT+TGG - Chr1:32887704-32887723 MsG0180002099.01.T01:intron 45.0%
! GTGGTGAGATGGCATTGAAA+AGG - Chr1:32889734-32889753 MsG0180002099.01.T01:intron 45.0%
! TAAGCCCAAGCTCTTTTCCT+TGG + Chr1:32890537-32890556 None:intergenic 45.0%
! TGACCTGCTATGTTTTCTGG+CGG - Chr1:32889977-32889996 MsG0180002099.01.T01:intron 45.0%
!! CAAGGTTGATGGAGCAAGTA+AGG - Chr1:32888036-32888055 MsG0180002099.01.T01:intron 45.0%
!! CCGACCACGATTTCTAAAAC+AGG + Chr1:32887860-32887879 None:intergenic 45.0%
!! CTGTTTTGTTGGGTTGTGGT+AGG + Chr1:32887884-32887903 None:intergenic 45.0%
!!! CACGTTTTTTTCCACCCACA+AGG + Chr1:32889931-32889950 None:intergenic 45.0%
!!! TTATTTTATTTTTACTAATA+AGG + Chr1:32889125-32889144 None:intergenic 5.0%
ACTCTTCTAAGCCGTGACCT+TGG - Chr1:32888364-32888383 MsG0180002099.01.T01:CDS 50.0%
ACTTGCTCCATCAACCTTGG+TGG + Chr1:32888035-32888054 None:intergenic 50.0%
AGCATCCTCTTGAGAAAGGG+GGG + Chr1:32887578-32887597 None:intergenic 50.0%
AGTCTCAAGTACGTGCCTTG+TGG - Chr1:32889913-32889932 MsG0180002099.01.T01:intron 50.0%
CCATTAGGGAAGGAGGAAAG+AGG + Chr1:32890198-32890217 None:intergenic 50.0%
CCTCTTTCCTCCTTCCCTAA+TGG - Chr1:32890195-32890214 MsG0180002099.01.T01:intron 50.0%
CTTTCCAACTCAGCTGGGAA+AGG + Chr1:32887439-32887458 None:intergenic 50.0%
GGGGGACTGTAAAGGTGAAA+TGG + Chr1:32887560-32887579 None:intergenic 50.0%
GTCTCAAGTACGTGCCTTGT+GGG - Chr1:32889914-32889933 MsG0180002099.01.T01:intron 50.0%
GTGACTCCATTCCAAGGTCA+CGG + Chr1:32888378-32888397 None:intergenic 50.0%
TCTAAGCCGTGACCTTGGAA+TGG - Chr1:32888369-32888388 MsG0180002099.01.T01:CDS 50.0%
TCTCCGCCAGAAAACATAGC+AGG + Chr1:32889983-32890002 None:intergenic 50.0%
TGAGAAAGGGGGGACTGTAA+AGG + Chr1:32887568-32887587 None:intergenic 50.0%
! CAAACGGGTTCTCTCCACTT+CGG - Chr1:32887371-32887390 MsG0180002099.01.T01:exon 50.0%
! GAGAGAACCCGTTTGGAGTA+CGG + Chr1:32887366-32887385 None:intergenic 50.0%
!! AGGGTTGAGTTTGGTGGTGT+TGG + Chr1:32887326-32887345 None:intergenic 50.0%
!! GGGTTGAGTTTGGTGGTGTT+GGG + Chr1:32887325-32887344 None:intergenic 50.0%
AACACTGGGCACCACTCTTG+TGG - Chr1:32890343-32890362 MsG0180002099.01.T01:CDS 55.0%
ACAGTCCCCCCTTTCTCAAG+AGG - Chr1:32887570-32887589 MsG0180002099.01.T01:intron 55.0%
AGACCCTTTCCCAGCTGAGT+TGG - Chr1:32887432-32887451 MsG0180002099.01.T01:CDS 55.0%
AGAGCCTAGACGTGCCTATG+AGG + Chr1:32890377-32890396 None:intergenic 55.0%
CGAAGTGGAGAGAACCCGTT+TGG + Chr1:32887373-32887392 None:intergenic 55.0%
TCAAGTACGTGCCTTGTGGG+TGG - Chr1:32889917-32889936 MsG0180002099.01.T01:intron 55.0%
GCCTAGACGTGCCTATGAGG+AGG + Chr1:32890374-32890393 None:intergenic 60.0%
GCCTCCTCATAGGCACGTCT+AGG - Chr1:32890370-32890389 MsG0180002099.01.T01:CDS 60.0%
TGGGCACCACTCTTGTGGCA+GGG - Chr1:32890348-32890367 MsG0180002099.01.T01:CDS 60.0%
TTGTGGCAGGGCCTCCTCAT+AGG - Chr1:32890360-32890379 MsG0180002099.01.T01:CDS 60.0%
AGGAGGCCCTGCCACAAGAG+TGG + Chr1:32890357-32890376 None:intergenic 65.0%
CTGGGCACCACTCTTGTGGC+AGG - Chr1:32890347-32890366 MsG0180002099.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 32887145 32890790 32887145 ID=MsG0180002099.01;Name=MsG0180002099.01
Chr1 mRNA 32887145 32890790 32887145 ID=MsG0180002099.01.T01;Parent=MsG0180002099.01;Name=MsG0180002099.01.T01;_AED=0.43;_eAED=0.43;_QI=126|1|1|1|1|1|3|233|209
Chr1 exon 32890320 32890790 32890320 ID=MsG0180002099.01.T01:exon:7468;Parent=MsG0180002099.01.T01
Chr1 exon 32888316 32888508 32888316 ID=MsG0180002099.01.T01:exon:7469;Parent=MsG0180002099.01.T01
Chr1 exon 32887145 32887469 32887145 ID=MsG0180002099.01.T01:exon:7470;Parent=MsG0180002099.01.T01
Chr1 five_prime_UTR 32890665 32890790 32890665 ID=MsG0180002099.01.T01:five_prime_utr;Parent=MsG0180002099.01.T01
Chr1 CDS 32890320 32890664 32890320 ID=MsG0180002099.01.T01:cds;Parent=MsG0180002099.01.T01
Chr1 CDS 32888316 32888508 32888316 ID=MsG0180002099.01.T01:cds;Parent=MsG0180002099.01.T01
Chr1 CDS 32887378 32887469 32887378 ID=MsG0180002099.01.T01:cds;Parent=MsG0180002099.01.T01
Chr1 three_prime_UTR 32887145 32887377 32887145 ID=MsG0180002099.01.T01:three_prime_utr;Parent=MsG0180002099.01.T01
Gene Sequence

>MsG0180002099.01.T01

ATGGCTACAACCAAGCTTGTATTATTATCCTTCCCTGTGGTACATGTAAATCCCAACACCACCAAACTCAACCCTTCATTCAATTTTCAAAACCGTACTCCAAACGGGTTCTCTCCACTTCGGTCTTTTAACAACGATTTCTTGGGGGATTTTGGAGCAAGAGACCCTTTCCCAGCTGAGTTGGAAAGTCAGTTTGGAGAGAAAGTTATAGGTAGTTATAACACTGAACACAAAATCCTTATCCCAAATATCTCTGCTCTTTCTCTTTCTCAACAAGAGTGTACCCCCATTTCACCTTTACAGTCCCCCCTTTCTCAAGAGGATGCTAACCAGCTTATAAGAAAGGTTTTGGGTTGGAGACTTGTGAATGATGAAGGAGTACTTAAACTTCGATGCTTGTGGAAATTGAGAGATTTTAAATGCGGAGTTGAACTCATTAACAGAATCTCTACAGTTGTAGAGACTGCAGGACATTTCCCCAATATCCACATAGAACAACCAAATCAAGTTAGAGCAGAACTATGGACAACATCCATTGGTGGATTAAGTATGAATGATTTCATTGTAGCTGCAAAGATAGATGCAATACAAACATCAGATCTTGTTCCAAGGAAAAGAGCTTGGGCTTAA

Protein sequence

>MsG0180002099.01.T01

MATTKLVLLSFPVVHVNPNTTKLNPSFNFQNRTPNGFSPLRSFNNDFLGDFGARDPFPAELESQFGEKVIGSYNTEHKILIPNISALSLSQQECTPISPLQSPLSQEDANQLIRKVLGWRLVNDEGVLKLRCLWKLRDFKCGVELINRISTVVETAGHFPNIHIEQPNQVRAELWTTSIGGLSMNDFIVAAKIDAIQTSDLVPRKRAWA*