AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018352.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018352.01.T01 MTR_4g010250 91.667 240 17 1 1 240 1 237 2.71e-148 414
MsG0480018352.01.T01 MTR_2g103795 50.598 251 110 4 1 238 1 250 2.45e-59 189
MsG0480018352.01.T01 MTR_4g114690 39.231 260 119 6 1 223 1 258 6.34e-47 157
MsG0480018352.01.T01 MTR_2g103795 47.768 224 103 4 1 211 1 223 2.50e-43 146
MsG0480018352.01.T01 MTR_5g029910 52.941 102 48 0 124 225 119 220 2.08e-33 121
MsG0480018352.01.T01 MTR_7g098450 43.443 122 65 2 110 230 211 329 1.35e-28 111
MsG0480018352.01.T01 MTR_7g098450 43.443 122 65 2 110 230 234 352 2.01e-28 110
MsG0480018352.01.T01 MTR_7g099260 42.857 119 65 1 115 233 228 343 4.76e-28 109
MsG0480018352.01.T01 MTR_1g073230 35.135 148 95 1 84 231 86 232 5.28e-22 93.6
MsG0480018352.01.T01 MTR_1g073230 39.091 110 66 1 121 229 266 375 8.56e-18 81.6
MsG0480018352.01.T01 MTR_3g463450 35.577 104 67 0 126 229 398 501 7.40e-17 79.7
MsG0480018352.01.T01 MTR_5g082130 32.110 109 73 1 118 225 288 396 1.46e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018352.01.T01 AT5G20190 31.541 279 112 6 1 225 1 254 1.23e-36 130
MsG0480018352.01.T01 AT4G32340 57.000 100 42 1 127 225 110 209 3.73e-35 125
MsG0480018352.01.T01 AT4G17940 51.961 102 49 0 124 225 147 248 6.81e-33 120
MsG0480018352.01.T01 AT1G04530 41.053 95 55 1 130 224 124 217 8.94e-19 84.0
MsG0480018352.01.T01 AT2G29670 36.893 103 65 0 123 225 416 518 1.56e-17 81.6
MsG0480018352.01.T01 AT2G29670 36.893 103 65 0 123 225 416 518 1.56e-17 81.6
MsG0480018352.01.T01 AT1G07280 34.615 104 68 0 126 229 434 537 8.54e-17 79.3
MsG0480018352.01.T01 AT1G07280 34.615 104 68 0 126 229 434 537 8.54e-17 79.3
MsG0480018352.01.T01 AT1G07280 34.615 104 68 0 126 229 434 537 8.54e-17 79.3
MsG0480018352.01.T01 AT3G47080 33.654 104 69 0 126 229 399 502 8.98e-13 67.8

Find 76 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCTATGCAGAATTAATA+TGG 0.211193 4:-3688791 MsG0480018352.01.T01:CDS
GTATCTACAAAGAGCGATTT+TGG 0.214301 4:-3688841 MsG0480018352.01.T01:CDS
CTTAAAACTGATATTGTTCT+AGG 0.215607 4:+3691117 None:intergenic
ACAGCGGAAACTTAAATTAA+AGG 0.239391 4:-3687387 MsG0480018352.01.T01:three_prime_UTR
ATTATATGAGAGCTAGTTAA+TGG 0.241534 4:+3691285 None:intergenic
TTAAGTAATTATTTCTTCTA+TGG 0.247092 4:+3687410 None:intergenic
CCATATTAATTCTGCATAGA+TGG 0.249294 4:+3688791 None:intergenic
AATTCTACTCGATGTCATTA+TGG 0.279852 4:-3691482 None:intergenic
GAGCTAGTTAATGGAGATAA+AGG 0.284990 4:+3691294 None:intergenic
GAGGACTCTTTGGAATTATA+AGG 0.297415 4:+3691168 None:intergenic
TTCAAAGTGACTCAGATAAT+TGG 0.306496 4:-3688719 MsG0480018352.01.T01:intron
CTTCGTATGCAAAATTCCTT+TGG 0.322965 4:-3687502 MsG0480018352.01.T01:CDS
AAGCTCAAGAGAGGACTCTT+TGG 0.327488 4:+3691158 None:intergenic
CTTCCACAATCTCACTTTGA+TGG 0.348453 4:-3687307 MsG0480018352.01.T01:three_prime_UTR
TTACTACATGGCACAAGAAA+TGG 0.383185 4:+3691039 None:intergenic
TGATTAGAGATGTTAGGCTT+AGG 0.384058 4:-3687273 MsG0480018352.01.T01:three_prime_UTR
GCTCTTGCTTGAAGAAGTTA+AGG 0.399852 4:-3687341 MsG0480018352.01.T01:three_prime_UTR
GATTAGAGATGTTAGGCTTA+GGG 0.406317 4:-3687272 MsG0480018352.01.T01:three_prime_UTR
GGTAACAATGAACTTAGAAT+TGG 0.408424 4:+3691189 None:intergenic
AGGGATGAGGGTATATATAT+AGG 0.422973 4:+3691314 None:intergenic
ACATGTGATCCGATTTAATT+CGG 0.423808 4:+3687450 None:intergenic
GGTGTGCTTCTATCATGTTT+TGG 0.426220 4:+3690821 None:intergenic
AGATGTTAGGCTTAGGGTGA+AGG 0.427548 4:-3687266 MsG0480018352.01.T01:three_prime_UTR
AGAGGCTCAGATGGTGGAAA+TGG 0.433784 4:-3690904 MsG0480018352.01.T01:CDS
GAAATAATCATGGTAGAGAT+AGG 0.441347 4:-3690858 MsG0480018352.01.T01:CDS
GTCTTCTGATTAGAGATGTT+AGG 0.444028 4:-3687279 MsG0480018352.01.T01:three_prime_UTR
TAAAGACTACCGAATTAAAT+CGG 0.445048 4:-3687459 MsG0480018352.01.T01:CDS
TTCGTATGCAAAATTCCTTT+GGG 0.445129 4:-3687501 MsG0480018352.01.T01:CDS
CTACTCGATGTCATTATGGT+AGG 0.455673 4:-3691478 None:intergenic
GCAAACTTCAGTGAAGGGAG+GGG 0.456243 4:-3690962 MsG0480018352.01.T01:CDS
TTTAATGAAGGAAATAATCA+TGG 0.466976 4:-3690868 MsG0480018352.01.T01:CDS
AAGTGTTTGATTAAGAAGAA+AGG 0.474239 4:+3691393 None:intergenic
AGCTAGTTAATGGAGATAAA+GGG 0.475779 4:+3691295 None:intergenic
CAAAGTGAAAGAGGCTAAGA+TGG 0.477457 4:-3690986 MsG0480018352.01.T01:CDS
AATAATATGCAGCTATGTCC+TGG 0.477958 4:-3687525 MsG0480018352.01.T01:intron
CGAAAGAAACAAAGTGAAAG+AGG 0.478819 4:-3690995 MsG0480018352.01.T01:CDS
CATCTATGCAGAATTAATAT+GGG 0.481359 4:-3688790 MsG0480018352.01.T01:CDS
AAACTTAAATTAAAGGATCA+AGG 0.491941 4:-3687380 MsG0480018352.01.T01:three_prime_UTR
TTGAAGGTCTAACTTGGCTA+AGG 0.496888 4:+3691083 None:intergenic
GGATGTAAAGGTGGTGGAAG+AGG 0.508579 4:-3690922 MsG0480018352.01.T01:CDS
TACTCGATGTCATTATGGTA+GGG 0.525744 4:-3691477 None:intergenic
TCAGATGGTGGAAATGGAAG+AGG 0.527871 4:-3690898 MsG0480018352.01.T01:CDS
TAATGGAGATAAAGGGATGA+GGG 0.527873 4:+3691302 None:intergenic
TGCAAACTTCAGTGAAGGGA+GGG 0.537406 4:-3690963 MsG0480018352.01.T01:CDS
AGAAGTAATGGTGGATGTAA+AGG 0.542026 4:-3690934 MsG0480018352.01.T01:CDS
ATGAGGGTATATATATAGGA+AGG 0.542326 4:+3691318 None:intergenic
GGTGGTGGAAGAGGCTCAGA+TGG 0.550677 4:-3690913 MsG0480018352.01.T01:CDS
CTTCAAGCAAGAGCAATGGC+TGG 0.551930 4:+3687350 None:intergenic
CAAACTTCAGTGAAGGGAGG+GGG 0.562041 4:-3690961 MsG0480018352.01.T01:CDS
GATAGCTAATTGATTGAGAG+TGG 0.564012 4:+3691431 None:intergenic
TGGGAAACAGAGAAGAATGC+TGG 0.574769 4:-3688771 MsG0480018352.01.T01:CDS
TTAATGGAGATAAAGGGATG+AGG 0.576454 4:+3691301 None:intergenic
GTACTTAGAACATTACTACA+TGG 0.576469 4:+3691027 None:intergenic
CATCAAAGTGAGATTGTGGA+AGG 0.582097 4:+3687308 None:intergenic
GATGGTGCAAACTTCAGTGA+AGG 0.585860 4:-3690968 MsG0480018352.01.T01:CDS
AATGGTGGATGTAAAGGTGG+TGG 0.586769 4:-3690928 MsG0480018352.01.T01:CDS
GCACCATCAAAGTGAGATTG+TGG 0.600787 4:+3687304 None:intergenic
AGAAAGGAAAGAGAAGCACT+AGG 0.602601 4:+3691409 None:intergenic
AGAAATAATTACTTAAACAG+CGG 0.604775 4:-3687403 MsG0480018352.01.T01:three_prime_UTR
CCAAGCAAAAGAGCATCACA+AGG 0.607278 4:+3690799 None:intergenic
GGTGGAAGAGGCTCAGATGG+TGG 0.608176 4:-3690910 MsG0480018352.01.T01:CDS
ATAGGAAGGTGAGAAAGAAG+TGG 0.609906 4:+3691332 None:intergenic
GTGCAAACTTCAGTGAAGGG+AGG 0.614647 4:-3690964 MsG0480018352.01.T01:CDS
CAGATGGTGGAAATGGAAGA+GGG 0.618945 4:-3690897 MsG0480018352.01.T01:CDS
ATGGTGCAAACTTCAGTGAA+GGG 0.622046 4:-3690967 MsG0480018352.01.T01:CDS
AGTATGTTCAAGCTCAAGAG+AGG 0.623493 4:+3691149 None:intergenic
AGTAATGGTGGATGTAAAGG+TGG 0.627702 4:-3690931 MsG0480018352.01.T01:CDS
ACTTCTTCAAGCAAGAGCAA+TGG 0.628760 4:+3687346 None:intergenic
ATGGTGGAAATGGAAGAGGG+TGG 0.650938 4:-3690894 MsG0480018352.01.T01:CDS
CAAGCAAGAGCAATGGCTGG+AGG 0.651395 4:+3687353 None:intergenic
GGTCTAACTTGGCTAAGGTG+TGG 0.652832 4:+3691088 None:intergenic
TGAACTTAGAATTGGTGCAG+AGG 0.666303 4:+3691197 None:intergenic
GACATAATATGACCATCACC+AGG 0.669196 4:+3688813 None:intergenic
TGATTGAGAGTGGATGAGTG+AGG 0.680548 4:+3691441 None:intergenic
CAAGCAAAAGAGCATCACAA+GGG 0.724452 4:+3690800 None:intergenic
TAATCAGAATCTGAACGCAG+CGG 0.729807 4:-3687136 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAAATAATGAAATTA+AGG - Chr4:3687944-3687963 MsG0480018352.01.T01:intron 10.0%
!! AAAGAAAATAATGAAATTAA+GGG - Chr4:3687945-3687964 MsG0480018352.01.T01:intron 10.0%
!! AAATAAAAATAAATAGAGAT+GGG + Chr4:3690999-3691018 None:intergenic 10.0%
!! ATATTAAGGTAATATAAAAT+TGG + Chr4:3690789-3690808 None:intergenic 10.0%
!! GATATTTAATGAAAATAATT+AGG - Chr4:3688923-3688942 MsG0480018352.01.T01:intron 10.0%
!! TAATGTTAATAAATTAACAT+TGG + Chr4:3690693-3690712 None:intergenic 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG + Chr4:3688451-3688470 None:intergenic 10.0%
!! TTCATAGTTATTAAATTATT+GGG - Chr4:3690356-3690375 MsG0480018352.01.T01:intron 10.0%
!! TTTGAAAATAAAACTAAAAA+TGG + Chr4:3687989-3688008 None:intergenic 10.0%
!!! ATAAGTAAATTTTTTTTGTA+GGG + Chr4:3688390-3688409 None:intergenic 10.0%
!!! ATATTATTTATTTTTTTGCA+TGG - Chr4:3687880-3687899 MsG0480018352.01.T01:intron 10.0%
!!! ATTTTATATTACCTTAATAT+AGG - Chr4:3690789-3690808 MsG0480018352.01.T01:CDS 10.0%
!!! CTATATAAATGTATTATTTT+TGG + Chr4:3690244-3690263 None:intergenic 10.0%
!!! TATAAGTAAATTTTTTTTGT+AGG + Chr4:3688391-3688410 None:intergenic 10.0%
!!! TTTTATATTACCTTAATATA+GGG - Chr4:3690790-3690809 MsG0480018352.01.T01:CDS 10.0%
!! AAGCATAAATTAAACAAATT+TGG - Chr4:3688701-3688720 MsG0480018352.01.T01:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - Chr4:3688773-3688792 MsG0480018352.01.T01:CDS 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + Chr4:3688792-3688773 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG - Chr4:3688583-3688602 MsG0480018352.01.T01:intron 15.0%
!! GAAATAAAAATAAATAGAGA+TGG + Chr4:3691000-3691019 None:intergenic 15.0%
!! GTTCATAGTTATTAAATTAT+TGG - Chr4:3690355-3690374 MsG0480018352.01.T01:intron 15.0%
!! TATAGAGATGATATATTATA+GGG + Chr4:3688847-3688866 None:intergenic 15.0%
!! TCATATTATATATAACATCA+TGG + Chr4:3690429-3690448 None:intergenic 15.0%
!! TTATAGAGATGATATATTAT+AGG + Chr4:3688848-3688867 None:intergenic 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG + Chr4:3688422-3688441 None:intergenic 15.0%
!!! AATTTTTGCGATATTTTTTT+CGG - Chr4:3688617-3688636 MsG0480018352.01.T01:intron 15.0%
!!! ATATCTTTAAAAATTCTCTT+TGG + Chr4:3689266-3689285 None:intergenic 15.0%
!!! ATATTTTGACTATCTTTTTA+AGG - Chr4:3689934-3689953 MsG0480018352.01.T01:intron 15.0%
!!! CTTATATCTTAAATTTTTGT+CGG + Chr4:3688572-3688591 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG + Chr4:3688423-3688442 None:intergenic 15.0%
!!! TATCTTTAAAAATTCTCTTT+GGG + Chr4:3689265-3689284 None:intergenic 15.0%
!!! TTAAGTAATTATTTCTTCTA+TGG + Chr4:3691204-3691223 None:intergenic 15.0%
!! AAACTTAAATTAAAGGATCA+AGG - Chr4:3691231-3691250 MsG0480018352.01.T01:exon 20.0%
!! AATAAAAAGTGAGAAAAACA+AGG + Chr4:3690496-3690515 None:intergenic 20.0%
!! AGAAATAATTACTTAAACAG+CGG - Chr4:3691208-3691227 MsG0480018352.01.T01:CDS 20.0%
!! ATATATAATGAGTCAAAGTT+TGG - Chr4:3690638-3690657 MsG0480018352.01.T01:intron 20.0%
!! ATTTATAACTTATGAATCAC+CGG + Chr4:3690049-3690068 None:intergenic 20.0%
!! CATTGAAGGTTTATAATATA+GGG - Chr4:3688287-3688306 MsG0480018352.01.T01:intron 20.0%
!! CATTGAATAATTAATGTATC+CGG - Chr4:3689027-3689046 MsG0480018352.01.T01:intron 20.0%
!! GTTGTATAATATATTAACAC+AGG - Chr4:3688191-3688210 MsG0480018352.01.T01:intron 20.0%
!! TAAGGTAATATAAAATTGGT+TGG + Chr4:3690785-3690804 None:intergenic 20.0%
!! TTAATAACTATGAACTTAGT+GGG + Chr4:3690350-3690369 None:intergenic 20.0%
!! TTAATCTTTATGTGTCTTAA+TGG + Chr4:3688902-3688921 None:intergenic 20.0%
!! TTTAATAACTATGAACTTAG+TGG + Chr4:3690351-3690370 None:intergenic 20.0%
!! TTTAATGAAGGAAATAATCA+TGG - Chr4:3687743-3687762 MsG0480018352.01.T01:intron 20.0%
!!! AAATTATGGAAAGTTTTTGA+AGG - Chr4:3687835-3687854 MsG0480018352.01.T01:intron 20.0%
!!! ATAATTTAAGGTGTCTTTTA+TGG + Chr4:3690111-3690130 None:intergenic 20.0%
!!! ATCTTTAAAAATTCTCTTTG+GGG + Chr4:3689264-3689283 None:intergenic 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG + Chr4:3688671-3688690 None:intergenic 20.0%
!!! TAAGCAAAAAATGACTTTTT+AGG - Chr4:3689002-3689021 MsG0480018352.01.T01:intron 20.0%
!!! TATAGGGTTAATTATGTTTT+TGG - Chr4:3688303-3688322 MsG0480018352.01.T01:intron 20.0%
!!! TATAGGGTTAATTATGTTTT+TGG + Chr4:3688322-3688303 None:intergenic 20.0%
!!! TCTTTTATGGTGTTTATTTT+GGG + Chr4:3690098-3690117 None:intergenic 20.0%
!!! TTGTTTTTCTCACTTTTTAT+TGG - Chr4:3690495-3690514 MsG0480018352.01.T01:intron 20.0%
!!! TTTTGATGTATTATAAAACG+TGG - Chr4:3690384-3690403 MsG0480018352.01.T01:intron 20.0%
! AAACAAATTTGGATTGAGTA+AGG - Chr4:3688712-3688731 MsG0480018352.01.T01:intron 25.0%
! AAATTAAAGACGTCGTATAT+AGG - Chr4:3690065-3690084 MsG0480018352.01.T01:intron 25.0%
! AAGTATCAACAAGATAAATC+CGG + Chr4:3691049-3691068 None:intergenic 25.0%
! AAGTGTTTGATTAAGAAGAA+AGG + Chr4:3687221-3687240 None:intergenic 25.0%
! ACAAAGTGCACAATAATTTA+AGG + Chr4:3690123-3690142 None:intergenic 25.0%
! ATGTATCTAACCAATAAATG+TGG + Chr4:3689053-3689072 None:intergenic 25.0%
! ATTAACATTATCTTGAGAGT+GGG - Chr4:3690703-3690722 MsG0480018352.01.T01:intron 25.0%
! ATTATATGAGAGCTAGTTAA+TGG + Chr4:3687329-3687348 None:intergenic 25.0%
! ATTTCTGTTTACCAATGAAA+GGG - Chr4:3691015-3691034 MsG0480018352.01.T01:CDS 25.0%
! CATCTATGCAGAATTAATAT+GGG - Chr4:3689821-3689840 MsG0480018352.01.T01:intron 25.0%
! CTTAAAACTGATATTGTTCT+AGG + Chr4:3687497-3687516 None:intergenic 25.0%
! GCATTGAAGGTTTATAATAT+AGG - Chr4:3688286-3688305 MsG0480018352.01.T01:intron 25.0%
! GTCTAAAAATTGTCAAAAAG+TGG - Chr4:3690588-3690607 MsG0480018352.01.T01:intron 25.0%
! GTGTTAAGAACGTTATTAAA+AGG + Chr4:3688647-3688666 None:intergenic 25.0%
! TAAAGACTACCGAATTAAAT+CGG - Chr4:3691152-3691171 MsG0480018352.01.T01:CDS 25.0%
! TATATATAACATCATGGAGA+AGG + Chr4:3690423-3690442 None:intergenic 25.0%
! TATTAACATTATCTTGAGAG+TGG - Chr4:3690702-3690721 MsG0480018352.01.T01:intron 25.0%
! TCATGAAAGTTGTCTATTAA+TGG + Chr4:3689568-3689587 None:intergenic 25.0%
!! ATCATTTCTCTTTTGCAAAT+AGG - Chr4:3689719-3689738 MsG0480018352.01.T01:intron 25.0%
!! GTCTTTTATGGTGTTTATTT+TGG + Chr4:3690099-3690118 None:intergenic 25.0%
!! TATTTCTGTTTACCAATGAA+AGG - Chr4:3691014-3691033 MsG0480018352.01.T01:CDS 25.0%
!! TTAATTTTCTAACAGTGAGA+TGG - Chr4:3688020-3688039 MsG0480018352.01.T01:intron 25.0%
!! TTTTCAACCAATAGAAATAG+AGG + Chr4:3689603-3689622 None:intergenic 25.0%
!! TTTTGTGTCAAATAGTATAG+TGG - Chr4:3689303-3689322 MsG0480018352.01.T01:intron 25.0%
!! TTTTTATTGGTCCAAAACAA+TGG - Chr4:3690508-3690527 MsG0480018352.01.T01:intron 25.0%
!!! GAGTGCAGAAATTTTTTTTA+GGG - Chr4:3688744-3688763 MsG0480018352.01.T01:CDS 25.0%
!!! TCATTTTCCTCTATTTCTAT+TGG - Chr4:3689593-3689612 MsG0480018352.01.T01:intron 25.0%
!!! TGAGTGCAGAAATTTTTTTT+AGG - Chr4:3688743-3688762 MsG0480018352.01.T01:CDS 25.0%
AAAACAATGGAGAGAGAAAA+AGG - Chr4:3690521-3690540 MsG0480018352.01.T01:intron 30.0%
AAGTAAGGACTAAACTTACA+AGG - Chr4:3688788-3688807 MsG0480018352.01.T01:CDS 30.0%
AAGTAAGGACTAAACTTACA+AGG + Chr4:3688807-3688788 None:intergenic 30.0%
AATCAGAACAACGTGAAATA+CGG + Chr4:3689512-3689531 None:intergenic 30.0%
ACAATGCATATTATATGCAG+GGG + Chr4:3689386-3689405 None:intergenic 30.0%
ACACCTTCATAAAAGTAAGT+TGG - Chr4:3690903-3690922 MsG0480018352.01.T01:CDS 30.0%
ACACTTAAAGCAATGTTACT+TGG - Chr4:3688218-3688237 MsG0480018352.01.T01:intron 30.0%
ACAGCGGAAACTTAAATTAA+AGG - Chr4:3691224-3691243 MsG0480018352.01.T01:exon 30.0%
ACATGTGATCCGATTTAATT+CGG + Chr4:3691164-3691183 None:intergenic 30.0%
AGACAATGCATATTATATGC+AGG + Chr4:3689388-3689407 None:intergenic 30.0%
AGCTAGTTAATGGAGATAAA+GGG + Chr4:3687319-3687338 None:intergenic 30.0%
ATGTATTATAAAACGTGGCA+AGG - Chr4:3690389-3690408 MsG0480018352.01.T01:intron 30.0%
CCATATTAATTCTGCATAGA+TGG + Chr4:3689823-3689842 None:intergenic 30.0%
CCATCTATGCAGAATTAATA+TGG - Chr4:3689820-3689839 MsG0480018352.01.T01:intron 30.0%
GAAATAATCATGGTAGAGAT+AGG - Chr4:3687753-3687772 MsG0480018352.01.T01:intron 30.0%
GACAATGCATATTATATGCA+GGG + Chr4:3689387-3689406 None:intergenic 30.0%
GGTAACAATGAACTTAGAAT+TGG + Chr4:3687425-3687444 None:intergenic 30.0%
GTACTTAGAACATTACTACA+TGG + Chr4:3687587-3687606 None:intergenic 30.0%
GTCAAAAAGTTGTTGACAAA+TGG - Chr4:3689686-3689705 MsG0480018352.01.T01:intron 30.0%
TAAAATTGGTTGGATGACTA+AGG + Chr4:3690775-3690794 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG + Chr4:3690470-3690489 None:intergenic 30.0%
TGCTTATATATGTGATCAGA+GGG + Chr4:3688988-3689007 None:intergenic 30.0%
TTCAAAGTGACTCAGATAAT+TGG - Chr4:3689892-3689911 MsG0480018352.01.T01:intron 30.0%
TTCGTATGCAAAATTCCTTT+GGG - Chr4:3691110-3691129 MsG0480018352.01.T01:CDS 30.0%
TTGCTTATATATGTGATCAG+AGG + Chr4:3688989-3689008 None:intergenic 30.0%
! ATCAGTGTGTTCAGTTTTTA+GGG + Chr4:3691424-3691443 None:intergenic 30.0%
! ATGAGGGTATATATATAGGA+AGG + Chr4:3687296-3687315 None:intergenic 30.0%
! GAGCTTACACATTTTAAATG+TGG - Chr4:3689329-3689348 MsG0480018352.01.T01:intron 30.0%
! TTTTTCTCTCTCCATTGTTT+TGG + Chr4:3690522-3690541 None:intergenic 30.0%
! TTTTTGCTTATATGTGTGAC+CGG - Chr4:3689101-3689120 MsG0480018352.01.T01:intron 30.0%
!! ACACCAACTTACTTTTATGA+AGG + Chr4:3690909-3690928 None:intergenic 30.0%
!! TAGGACTTGATAAGTTTTGA+AGG + Chr4:3687547-3687566 None:intergenic 30.0%
!! TTATGGAAAGTTTTTGAAGG+AGG - Chr4:3687838-3687857 MsG0480018352.01.T01:intron 30.0%
!!! TAAGTTTTGAAGGTCTAACT+TGG + Chr4:3687537-3687556 None:intergenic 30.0%
!!! TTTTGCGATATTTTTTTCGG+AGG - Chr4:3688620-3688639 MsG0480018352.01.T01:intron 30.0%
AAAACTCAAAGTCGCATTGA+AGG - Chr4:3688273-3688292 MsG0480018352.01.T01:intron 35.0%
AAGGTGAGAAAAACACAAGA+AGG - Chr4:3691364-3691383 MsG0480018352.01.T01:five_prime_UTR 35.0%
AATAATATGCAGCTATGTCC+TGG - Chr4:3691086-3691105 MsG0480018352.01.T01:CDS 35.0%
AGAGAGAAAAAGGAAAAGAG+AGG - Chr4:3690531-3690550 MsG0480018352.01.T01:intron 35.0%
AGGTGAGAAAAACACAAGAA+GGG - Chr4:3691365-3691384 MsG0480018352.01.T01:five_prime_UTR 35.0%
AGTTGTGATAAAGAGAAGCA+TGG - Chr4:3688061-3688080 MsG0480018352.01.T01:intron 35.0%
ATCTAACCAATAAATGTGGC+CGG + Chr4:3689049-3689068 None:intergenic 35.0%
ATGTAGCAGAGCTCAATTAT+TGG - Chr4:3689962-3689981 MsG0480018352.01.T01:intron 35.0%
CGAAAGAAACAAAGTGAAAG+AGG - Chr4:3687616-3687635 MsG0480018352.01.T01:intron 35.0%
CTAAAAGACACCTTCACAAA+AGG - Chr4:3690958-3690977 MsG0480018352.01.T01:CDS 35.0%
CTCTATGAGTTTAACTCAGT+TGG + Chr4:3689414-3689433 None:intergenic 35.0%
CTTCGTATGCAAAATTCCTT+TGG - Chr4:3691109-3691128 MsG0480018352.01.T01:CDS 35.0%
GAGCTAGTTAATGGAGATAA+AGG + Chr4:3687320-3687339 None:intergenic 35.0%
GATAGCTAATTGATTGAGAG+TGG + Chr4:3687183-3687202 None:intergenic 35.0%
GATTAGAGATGTTAGGCTTA+GGG - Chr4:3691339-3691358 MsG0480018352.01.T01:five_prime_UTR 35.0%
GGATCCAAAAGTCTATCAAA+CGG - Chr4:3688086-3688105 MsG0480018352.01.T01:intron 35.0%
GTCTTCTGATTAGAGATGTT+AGG - Chr4:3691332-3691351 MsG0480018352.01.T01:five_prime_UTR 35.0%
GTGTCAAATAGTATAGTGGT+TGG - Chr4:3689307-3689326 MsG0480018352.01.T01:intron 35.0%
TAATGGAGATAAAGGGATGA+GGG + Chr4:3687312-3687331 None:intergenic 35.0%
TGATTAGAGATGTTAGGCTT+AGG - Chr4:3691338-3691357 MsG0480018352.01.T01:five_prime_UTR 35.0%
TGTAGCAAGACCCTATATTA+AGG + Chr4:3690803-3690822 None:intergenic 35.0%
TGTAGCAGAGCTCAATTATT+GGG - Chr4:3689963-3689982 MsG0480018352.01.T01:intron 35.0%
TTAAAGACGTCGTATATAGG+CGG - Chr4:3690068-3690087 MsG0480018352.01.T01:intron 35.0%
TTAATGGAGATAAAGGGATG+AGG + Chr4:3687313-3687332 None:intergenic 35.0%
TTACTACATGGCACAAGAAA+TGG + Chr4:3687575-3687594 None:intergenic 35.0%
TTTGAAGGAGGTAATGATCA+TGG - Chr4:3687850-3687869 MsG0480018352.01.T01:intron 35.0%
! AAATTTTGAACTACTCCCTC+CGG + Chr4:3689123-3689142 None:intergenic 35.0%
! AGGGATGAGGGTATATATAT+AGG + Chr4:3687300-3687319 None:intergenic 35.0%
! ATGTGGAGAAATGAAGTGTT+AGG - Chr4:3689346-3689365 MsG0480018352.01.T01:intron 35.0%
! CTCTTTTGCAAATAGGTTTG+TGG - Chr4:3689726-3689745 MsG0480018352.01.T01:intron 35.0%
! GATCAGTGTGTTCAGTTTTT+AGG + Chr4:3691425-3691444 None:intergenic 35.0%
! GCTCTTTTGCTTGGAAATTA+TGG - Chr4:3687821-3687840 MsG0480018352.01.T01:intron 35.0%
! GTATCTACAAAGAGCGATTT+TGG - Chr4:3689770-3689789 MsG0480018352.01.T01:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG - Chr4:3688804-3688823 MsG0480018352.01.T01:CDS 35.0%
! TACAAGGTCGCAATTTTGTA+GGG + Chr4:3688823-3688804 None:intergenic 35.0%
! TATTTAAGACGAACAGAGAC+CGG - Chr4:3690027-3690046 MsG0480018352.01.T01:intron 35.0%
! TGTGGAGAAATGAAGTGTTA+GGG - Chr4:3689347-3689366 MsG0480018352.01.T01:intron 35.0%
! TTACAAGGTCGCAATTTTGT+AGG - Chr4:3688803-3688822 MsG0480018352.01.T01:CDS 35.0%
! TTACAAGGTCGCAATTTTGT+AGG + Chr4:3688822-3688803 None:intergenic 35.0%
!! AGAAGTAATGGTGGATGTAA+AGG - Chr4:3687677-3687696 MsG0480018352.01.T01:intron 35.0%
!! AGAGGGTGGAATTTTAATGA+AGG - Chr4:3687731-3687750 MsG0480018352.01.T01:intron 35.0%
!! GAGGACTCTTTGGAATTATA+AGG + Chr4:3687446-3687465 None:intergenic 35.0%
!!! GGCACAAGAAATGGTTTTTT+AGG + Chr4:3687566-3687585 None:intergenic 35.0%
AAAGTGCAAATCACACCTTG+AGG + Chr4:3690861-3690880 None:intergenic 40.0%
ACTAATGAGAGAGTGATGCA+TGG - Chr4:3689202-3689221 MsG0480018352.01.T01:intron 40.0%
ACTTCTTCAAGCAAGAGCAA+TGG + Chr4:3691268-3691287 None:intergenic 40.0%
AGTATGTTCAAGCTCAAGAG+AGG + Chr4:3687465-3687484 None:intergenic 40.0%
ATAGGAAGGTGAGAAAGAAG+TGG + Chr4:3687282-3687301 None:intergenic 40.0%
ATGGTGCAAACTTCAGTGAA+GGG - Chr4:3687644-3687663 MsG0480018352.01.T01:intron 40.0%
ATGTATCCGGCCACATTTAT+TGG - Chr4:3689040-3689059 MsG0480018352.01.T01:intron 40.0%
ATTGGTTGGATGACTAAGGT+AGG + Chr4:3690771-3690790 None:intergenic 40.0%
CAAAGTGAAAGAGGCTAAGA+TGG - Chr4:3687625-3687644 MsG0480018352.01.T01:intron 40.0%
CATCAAAGTGAGATTGTGGA+AGG + Chr4:3691306-3691325 None:intergenic 40.0%
CTTCCACAATCTCACTTTGA+TGG - Chr4:3691304-3691323 MsG0480018352.01.T01:five_prime_UTR 40.0%
GACATAATATGACCATCACC+AGG + Chr4:3689801-3689820 None:intergenic 40.0%
GCTCTTGCTTGAAGAAGTTA+AGG - Chr4:3691270-3691289 MsG0480018352.01.T01:five_prime_UTR 40.0%
GGTGAGAAAAACACAAGAAG+GGG - Chr4:3691366-3691385 MsG0480018352.01.T01:five_prime_UTR 40.0%
GTGAGAAAAACACAAGAAGG+GGG - Chr4:3691367-3691386 MsG0480018352.01.T01:five_prime_UTR 40.0%
TCCAAAAGTCTATCAAACGG+AGG - Chr4:3688089-3688108 MsG0480018352.01.T01:intron 40.0%
TGAACTTAGAATTGGTGCAG+AGG + Chr4:3687417-3687436 None:intergenic 40.0%
TGCTAAAAGACACCACCAAA+GGG + Chr4:3690831-3690850 None:intergenic 40.0%
TTGAAGGTCTAACTTGGCTA+AGG + Chr4:3687531-3687550 None:intergenic 40.0%
TTGCTAAAAGACACCACCAA+AGG + Chr4:3690832-3690851 None:intergenic 40.0%
TTGGTTGGATGACTAAGGTA+GGG + Chr4:3690770-3690789 None:intergenic 40.0%
! CTAGAAGACACCTTTTGTGA+AGG + Chr4:3690971-3690990 None:intergenic 40.0%
! GGTGTGCTTCTATCATGTTT+TGG + Chr4:3687793-3687812 None:intergenic 40.0%
! GTGATAAAGAGAAGCATGGT+TGG - Chr4:3688065-3688084 MsG0480018352.01.T01:intron 40.0%
! TATCTACAAGGGGAAAGCAT+GGG + Chr4:3689239-3689258 None:intergenic 40.0%
! TCTTTGGGGACTATCTACAA+GGG + Chr4:3689250-3689269 None:intergenic 40.0%
! TTTTAGCAAGTCACACCTCA+AGG - Chr4:3690843-3690862 MsG0480018352.01.T01:CDS 40.0%
!! AGAAAGGAAAGAGAAGCACT+AGG + Chr4:3687205-3687224 None:intergenic 40.0%
!! AGTAATGGTGGATGTAAAGG+TGG - Chr4:3687680-3687699 MsG0480018352.01.T01:intron 40.0%
!! CAAGCAAAAGAGCATCACAA+GGG + Chr4:3687814-3687833 None:intergenic 40.0%
!!! ATTTTGGCTAATCCTGGTGA+TGG - Chr4:3689786-3689805 MsG0480018352.01.T01:intron 40.0%
AAGCTCAAGAGAGGACTCTT+TGG + Chr4:3687456-3687475 None:intergenic 45.0%
AATGAGAGAGTGATGCATGG+AGG - Chr4:3689205-3689224 MsG0480018352.01.T01:intron 45.0%
AGATGTTAGGCTTAGGGTGA+AGG - Chr4:3691345-3691364 MsG0480018352.01.T01:five_prime_UTR 45.0%
ATGAGAGAGTGATGCATGGA+GGG - Chr4:3689206-3689225 MsG0480018352.01.T01:intron 45.0%
CTATCTACAAGGGGAAAGCA+TGG + Chr4:3689240-3689259 None:intergenic 45.0%
GATGGTGCAAACTTCAGTGA+AGG - Chr4:3687643-3687662 MsG0480018352.01.T01:intron 45.0%
GCACCATCAAAGTGAGATTG+TGG + Chr4:3691310-3691329 None:intergenic 45.0%
TAAAAGACACCACCAAAGGG+TGG + Chr4:3690828-3690847 None:intergenic 45.0%
TGATTGAGAGTGGATGAGTG+AGG + Chr4:3687173-3687192 None:intergenic 45.0%
TGCAAACTTCAGTGAAGGGA+GGG - Chr4:3687648-3687667 MsG0480018352.01.T01:intron 45.0%
TGCTTATATGTGTGACCGGA+GGG - Chr4:3689105-3689124 MsG0480018352.01.T01:intron 45.0%
TGGGAAACAGAGAAGAATGC+TGG - Chr4:3689840-3689859 MsG0480018352.01.T01:intron 45.0%
TGGTTGGATGACTAAGGTAG+GGG + Chr4:3690769-3690788 None:intergenic 45.0%
TTGCTTATATGTGTGACCGG+AGG - Chr4:3689104-3689123 MsG0480018352.01.T01:intron 45.0%
! CAATGAAAGGGTCTTGTCTC+CGG - Chr4:3691027-3691046 MsG0480018352.01.T01:CDS 45.0%
! CCTTGTGATGCTCTTTTGCT+TGG - Chr4:3687812-3687831 MsG0480018352.01.T01:intron 45.0%
! CTCTTTGGGGACTATCTACA+AGG + Chr4:3689251-3689270 None:intergenic 45.0%
! CTTTGGGGACTATCTACAAG+GGG + Chr4:3689249-3689268 None:intergenic 45.0%
! GCCTCCGTTTGATAGACTTT+TGG + Chr4:3688093-3688112 None:intergenic 45.0%
! GGAATTTTGCATACGAAGCC+AGG + Chr4:3691107-3691126 None:intergenic 45.0%
!! AATGGTGGATGTAAAGGTGG+TGG - Chr4:3687683-3687702 MsG0480018352.01.T01:intron 45.0%
!! CAGATGGTGGAAATGGAAGA+GGG - Chr4:3687714-3687733 MsG0480018352.01.T01:intron 45.0%
!! CCAAGCAAAAGAGCATCACA+AGG + Chr4:3687815-3687834 None:intergenic 45.0%
!! TAAGGTGTTGTGGGACAATG+AGG + Chr4:3690743-3690762 None:intergenic 45.0%
!! TCAGATGGTGGAAATGGAAG+AGG - Chr4:3687713-3687732 MsG0480018352.01.T01:intron 45.0%
!!! AGAGCGATTTTGGCTAATCC+TGG - Chr4:3689780-3689799 MsG0480018352.01.T01:intron 45.0%
!! ATATATTATTACATTTATAT+AGG - Chr4:3690301-3690320 MsG0480018352.01.T01:intron 5.0%
!! TATCATATAAATATTTATAT+AGG - Chr4:3690213-3690232 MsG0480018352.01.T01:intron 5.0%
CAAACTTCAGTGAAGGGAGG+GGG - Chr4:3687650-3687669 MsG0480018352.01.T01:intron 50.0%
CGGAGACAAGACCCTTTCAT+TGG + Chr4:3691029-3691048 None:intergenic 50.0%
CTTCAAGCAAGAGCAATGGC+TGG + Chr4:3691264-3691283 None:intergenic 50.0%
GCAAACTTCAGTGAAGGGAG+GGG - Chr4:3687649-3687668 MsG0480018352.01.T01:intron 50.0%
GGTCTAACTTGGCTAAGGTG+TGG + Chr4:3687526-3687545 None:intergenic 50.0%
GGTTGGATGACTAAGGTAGG+GGG + Chr4:3690768-3690787 None:intergenic 50.0%
GTGCAAACTTCAGTGAAGGG+AGG - Chr4:3687647-3687666 MsG0480018352.01.T01:intron 50.0%
GTTGGATGACTAAGGTAGGG+GGG + Chr4:3690767-3690786 None:intergenic 50.0%
TCTTGCTACAAGCCACCCTT+TGG - Chr4:3690813-3690832 MsG0480018352.01.T01:CDS 50.0%
TGACTAAGGTAGGGGGGTTA+AGG + Chr4:3690761-3690780 None:intergenic 50.0%
TGAGAGAGTGATGCATGGAG+GGG - Chr4:3689207-3689226 MsG0480018352.01.T01:intron 50.0%
! ATGGTGGAAATGGAAGAGGG+TGG - Chr4:3687717-3687736 MsG0480018352.01.T01:intron 50.0%
!! AGAGGCTCAGATGGTGGAAA+TGG - Chr4:3687707-3687726 MsG0480018352.01.T01:intron 50.0%
!! GGATGTAAAGGTGGTGGAAG+AGG - Chr4:3687689-3687708 MsG0480018352.01.T01:intron 50.0%
!! TAGGGGGGTTAAGGTGTTGT+GGG + Chr4:3690752-3690771 None:intergenic 50.0%
CAAGCAAGAGCAATGGCTGG+AGG + Chr4:3691261-3691280 None:intergenic 55.0%
TGCTACAAGCCACCCTTTGG+TGG - Chr4:3690816-3690835 MsG0480018352.01.T01:CDS 55.0%
! CAAGGGGAAAGCATGGGCTT+TGG + Chr4:3689233-3689252 None:intergenic 55.0%
! GGAGGGGGTGTGAGAAGTAA+TGG - Chr4:3687665-3687684 MsG0480018352.01.T01:intron 55.0%
! GGGGGTGTGAGAAGTAATGG+TGG - Chr4:3687668-3687687 MsG0480018352.01.T01:intron 55.0%
!! GTAGGGGGGTTAAGGTGTTG+TGG + Chr4:3690753-3690772 None:intergenic 55.0%
GGTGGAAGAGGCTCAGATGG+TGG - Chr4:3687701-3687720 MsG0480018352.01.T01:intron 60.0%
!! GGTGGTGGAAGAGGCTCAGA+TGG - Chr4:3687698-3687717 MsG0480018352.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 3687139 3691494 3687139 ID=MsG0480018352.01;Name=MsG0480018352.01
Chr4 mRNA 3687139 3691494 3687139 ID=MsG0480018352.01.T01;Parent=MsG0480018352.01;Name=MsG0480018352.01.T01;_AED=0.47;_eAED=0.47;_QI=259|1|1|1|1|1|3|309|240
Chr4 exon 3687139 3687535 3687139 ID=MsG0480018352.01.T01:exon:1479;Parent=MsG0480018352.01.T01
Chr4 exon 3688720 3688892 3688720 ID=MsG0480018352.01.T01:exon:1478;Parent=MsG0480018352.01.T01
Chr4 exon 3690774 3691494 3690774 ID=MsG0480018352.01.T01:exon:1477;Parent=MsG0480018352.01.T01
Chr4 five_prime_UTR 3691236 3691494 3691236 ID=MsG0480018352.01.T01:five_prime_utr;Parent=MsG0480018352.01.T01
Chr4 CDS 3690774 3691235 3690774 ID=MsG0480018352.01.T01:cds;Parent=MsG0480018352.01.T01
Chr4 CDS 3688720 3688892 3688720 ID=MsG0480018352.01.T01:cds;Parent=MsG0480018352.01.T01
Chr4 CDS 3687448 3687535 3687448 ID=MsG0480018352.01.T01:cds;Parent=MsG0480018352.01.T01
Chr4 three_prime_UTR 3687139 3687447 3687139 ID=MsG0480018352.01.T01:three_prime_utr;Parent=MsG0480018352.01.T01
Gene Sequence

>MsG0480018352.01.T01

ATGCTACTTAGAAGCTCCTCTGCACCAATTCTAAGTTCATTGTTACCTTATAATTCCAAAGAGTCCTCTCTTGAGCTTGAACATACTCTTAAGCTTCCTAGAACAATATCAGTTTTAAGTTTAAGCCACACCTTAGCCAAGTTAGACCTTCAAAACTTATCAAGTCCTAAAAAACCATTTCTTGTGCCATGTAGTAATGTTCTAAGTACAAATATGAACGAAAGAAACAAAGTGAAAGAGGCTAAGATGGTGCAAACTTCAGTGAAGGGAGGGGGTGTGAGAAGTAATGGTGGATGTAAAGGTGGTGGAAGAGGCTCAGATGGTGGAAATGGAAGAGGGTGGAATTTTAATGAAGGAAATAATCATGGTAGAGATAGGTTAGATGCTTATTACCAAAACATGATAGAAGCACACCCTTGTGATGCTCTTTTGCTTGGAAATTATGGAAAGTTTTTGAAGGAGGTTTGTGGAGATTACGCTAAAGCAGAAGAGTATCTACAAAGAGCGATTTTGGCTAATCCTGGTGATGGTCATATTATGTCCATCTATGCAGAATTAATATGGGAAACAGAGAAGAATGCTGGTCGAGCTCAACAATATTTTGATCAAGCTATTCAAAGTGACTCAGATAATTGCTATGTCCTGGCTTCGTATGCAAAATTCCTTTGGGATGCTGAAAATGAAGAAGATAAAGACTACCGAATTAAATCGGATCACATGTGA
Protein sequence

>MsG0480018352.01.T01

MLLRSSSAPILSSLLPYNSKESSLELEHTLKLPRTISVLSLSHTLAKLDLQNLSSPKKPFLVPCSNVLSTNMNERNKVKEAKMVQTSVKGGGVRSNGGCKGGGRGSDGGNGRGWNFNEGNNHGRDRLDAYYQNMIEAHPCDALLLGNYGKFLKEVCGDYAKAEEYLQRAILANPGDGHIMSIYAELIWETEKNAGRAQQYFDQAIQSDSDNCYVLASYAKFLWDAENEEDKDYRIKSDHM*