AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043144.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043144.01.T01 MTR_8g028920 96.552 58 1 1 30 87 16 72 6.05e-35 119
MsG0880043144.01.T01 MTR_8g098595 81.034 58 10 1 30 87 1 57 4.49e-29 103
MsG0880043144.01.T01 MTR_4g106690 77.586 58 12 1 30 87 16 72 8.98e-27 98.2
MsG0880043144.01.T01 MTR_8g098615 76.786 56 12 1 30 85 7 61 2.95e-26 93.6
MsG0880043144.01.T01 MTR_8g098615 78.182 55 11 1 31 85 1 54 1.03e-25 92.0
MsG0880043144.01.T01 MTR_1g073390 71.930 57 15 1 30 86 1 56 1.86e-22 84.3
MsG0880043144.01.T01 MTR_8g098635 70.690 58 16 1 30 87 6 62 2.84e-21 87.0
MsG0880043144.01.T01 MTR_8g028920 93.548 31 1 1 57 87 4 33 6.85e-13 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043144.01.T01 AT1G63800 79.310 58 11 1 30 87 1 57 9.92e-28 100
MsG0880043144.01.T01 AT1G63800 79.310 58 11 1 30 87 16 72 1.07e-27 100
MsG0880043144.01.T01 AT5G41340 81.034 58 10 1 30 87 16 72 1.11e-27 100
MsG0880043144.01.T01 AT2G46030 72.414 58 15 1 30 87 16 72 1.16e-25 95.1
MsG0880043144.01.T01 AT2G46030 72.414 58 15 1 30 87 16 72 1.16e-25 95.1
MsG0880043144.01.T01 AT2G46030 72.414 58 15 1 30 87 19 75 1.72e-25 94.7
MsG0880043144.01.T01 AT2G46030 72.414 58 15 1 30 87 19 75 1.72e-25 94.7
MsG0880043144.01.T01 AT2G46030 72.414 58 15 1 30 87 88 144 3.43e-25 95.9

Find 35 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCACTGGGTCCATGAAAA+TGG 0.224067 8:-19698241 None:intergenic
AACGGGGAAACCCGTCAAAT+TGG 0.235871 8:-19695321 None:intergenic
CGTCAAATTGGGTTTGGTTC+GGG 0.302615 8:-19695309 None:intergenic
TAGGATGATGAGTGATTATA+AGG 0.329799 8:+19698181 MsG0880043144.01.T01:intron
CCTTATAAGTCTCCTTCAAT+AGG 0.346660 8:+19698922 MsG0880043144.01.T01:CDS
CCTATTGAAGGAGACTTATA+AGG 0.347185 8:-19698922 None:intergenic
GAAAGGGAAATTACTTTCAC+TGG 0.349026 8:-19698255 None:intergenic
CCGTCAAATTGGGTTTGGTT+CGG 0.362766 8:-19695310 None:intergenic
CATAACATCTCATCAACCTT+TGG 0.377959 8:-19698966 None:intergenic
GAAACCCGTCAAATTGGGTT+TGG 0.380683 8:-19695315 None:intergenic
TACCCAAACCCAGTCAAAAC+GGG 0.384169 8:-19695338 None:intergenic
TTGGTTCGGGCGGGTAACCG+CGG 0.401171 8:-19695296 None:intergenic
ACGGGGAAACCCGTCAAATT+GGG 0.429310 8:-19695320 None:intergenic
ATAACATCTCATCAACCTTT+GGG 0.435325 8:-19698965 None:intergenic
TGGTTCGGGCGGGTAACCGC+GGG 0.439626 8:-19695295 None:intergenic
TTCCACACACCTCCTTGATA+AGG 0.450621 8:-19698868 None:intergenic
CGAACCAAACCCAATTTGAC+GGG 0.468023 8:+19695311 MsG0880043144.01.T01:CDS
ATACCCAAACCCAGTCAAAA+CGG 0.479990 8:-19695339 None:intergenic
CCGAACCAAACCCAATTTGA+CGG 0.493095 8:+19695310 MsG0880043144.01.T01:CDS
TTATTGATGAAACCTATTGA+AGG 0.512619 8:-19698934 None:intergenic
CAAATTGGGTTTGGTTCGGG+CGG 0.547214 8:-19695306 None:intergenic
CTCATGTCAGGTCCTTATCA+AGG 0.551300 8:+19698856 MsG0880043144.01.T01:intron
AAATTGGGTTTGGTTCGGGC+GGG 0.564546 8:-19695305 None:intergenic
TCAATAAGTTTATCACCCAA+AGG 0.566817 8:+19698950 MsG0880043144.01.T01:CDS
TTATAAGGATAAGCATCCTC+CGG 0.575913 8:-19698907 None:intergenic
GAAAGTAAGAGTTGAGCTAC+CGG 0.580502 8:+19698888 MsG0880043144.01.T01:CDS
AAAGGGAAATTACTTTCACT+GGG 0.594682 8:-19698254 None:intergenic
GATGATGAGTGATTATAAGG+TGG 0.599886 8:+19698184 MsG0880043144.01.T01:CDS
AAGGTGGAAATGATTAACGA+TGG 0.607049 8:+19698200 MsG0880043144.01.T01:CDS
GTCCTTATCAAGGAGGTGTG+TGG 0.614843 8:+19698866 MsG0880043144.01.T01:CDS
TTAAATTAATAAAACATGTG+AGG 0.630664 8:-19699033 None:intergenic
ACCCAAACCCAGTCAAAACG+GGG 0.672970 8:-19695337 None:intergenic
TGGCAACAAACTCATACCCG+CGG 0.710310 8:+19695279 MsG0880043144.01.T01:CDS
ATGTCAGGTCCTTATCAAGG+AGG 0.713248 8:+19698859 MsG0880043144.01.T01:intron
AGTAAGAGTTGAGCTACCGG+AGG 0.717644 8:+19698891 MsG0880043144.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATATTAATAATAATT+CGG - Chr8:19696385-19696404 None:intergenic 0.0%
!! AAAAATAAAATAAAAATATA+AGG - Chr8:19696143-19696162 None:intergenic 0.0%
!!! ATTATTAATATTTTTTTTTT+GGG + Chr8:19696389-19696408 MsG0880043144.01.T01:intron 0.0%
!!! TATTATTAATATTTTTTTTT+TGG + Chr8:19696388-19696407 MsG0880043144.01.T01:intron 0.0%
!! AAAAAATTAATAAATAGCTA+AGG - Chr8:19696997-19697016 None:intergenic 10.0%
!! ATAAATATTTGTTTATAATG+AGG - Chr8:19697522-19697541 None:intergenic 10.0%
!! TAATCTTTAATCTTAATTTA+TGG - Chr8:19697237-19697256 None:intergenic 10.0%
!! TATTATAGATAATAGAAAAT+TGG + Chr8:19696427-19696446 MsG0880043144.01.T01:intron 10.0%
!! TTAAAAAAAATTATTCAATG+CGG + Chr8:19695628-19695647 MsG0880043144.01.T01:intron 10.0%
!!! AAAACACATTTTTAATTTAT+TGG - Chr8:19697428-19697447 None:intergenic 10.0%
!!! AATTAAAATTTCTTTTTGAA+AGG + Chr8:19696254-19696273 MsG0880043144.01.T01:intron 10.0%
!!! AATTTTTAGTATGAAATAAT+TGG + Chr8:19698637-19698656 MsG0880043144.01.T01:intron 10.0%
!!! TCATTTTGAATAAAATTAAA+GGG - Chr8:19696457-19696476 None:intergenic 10.0%
!!! TTCATTTTGAATAAAATTAA+AGG - Chr8:19696458-19696477 None:intergenic 10.0%
!!! TTTTAAATTTGAAAAGAAAT+TGG - Chr8:19695932-19695951 None:intergenic 10.0%
!!! TTTTGACAAATTATTATTAT+GGG - Chr8:19696849-19696868 None:intergenic 10.0%
!!! TTTTTGACAAATTATTATTA+TGG - Chr8:19696850-19696869 None:intergenic 10.0%
!! AAACAAATTATAGAAAAGAA+AGG - Chr8:19698275-19698294 None:intergenic 15.0%
!! AACAAATTATAGAAAAGAAA+GGG - Chr8:19698274-19698293 None:intergenic 15.0%
!! AAGTAGTATTTAATGTTTAT+TGG - Chr8:19696962-19696981 None:intergenic 15.0%
!! CATTCAATCAATAATATATT+TGG - Chr8:19697749-19697768 None:intergenic 15.0%
!! TAAAAAAAATTATTCAATGC+GGG + Chr8:19695629-19695648 MsG0880043144.01.T01:intron 15.0%
!! TTAGACAATTATTACTAATT+TGG + Chr8:19696514-19696533 MsG0880043144.01.T01:intron 15.0%
!! TTATATAATCTTAAACAATC+TGG + Chr8:19696187-19696206 MsG0880043144.01.T01:intron 15.0%
!! TTTGACAAATTATTATTATG+GGG - Chr8:19696848-19696867 None:intergenic 15.0%
!!! ATTAATATTTTTTTTTTGGG+TGG + Chr8:19696392-19696411 MsG0880043144.01.T01:intron 15.0%
!!! CAAATCTTATTTTAACATTA+AGG - Chr8:19698761-19698780 None:intergenic 15.0%
!!! CATTTTGAATAAAATTAAAG+GGG - Chr8:19696456-19696475 None:intergenic 15.0%
!!! GATATTTTTATTAGTTAAAG+TGG - Chr8:19695900-19695919 None:intergenic 15.0%
!!! TTAATATTTTTTTTTTGGGT+GGG + Chr8:19696393-19696412 MsG0880043144.01.T01:intron 15.0%
!! AATTGTATGTATGGTTAAAA+TGG + Chr8:19697119-19697138 MsG0880043144.01.T01:intron 20.0%
!! ATAAAACCATAATAAGCAAA+AGG - Chr8:19698592-19698611 None:intergenic 20.0%
!! ATTTACAATAAGTGTAACAA+TGG - Chr8:19696801-19696820 None:intergenic 20.0%
!! ATTTGATATCTATTATGAGA+AGG + Chr8:19698776-19698795 MsG0880043144.01.T01:intron 20.0%
!! CATAACTTTGATGAAATAAT+GGG - Chr8:19696702-19696721 None:intergenic 20.0%
!! GACTAAAAAATGATGATTTA+TGG - Chr8:19697262-19697281 None:intergenic 20.0%
!! TAAAACCATAATAAGCAAAA+GGG - Chr8:19698591-19698610 None:intergenic 20.0%
!! TAACTACCATTGATATTTAA+AGG + Chr8:19695510-19695529 MsG0880043144.01.T01:intron 20.0%
!! TCATAACTTTGATGAAATAA+TGG - Chr8:19696703-19696722 None:intergenic 20.0%
!! TGATCTATATTACAAATCAA+AGG + Chr8:19697209-19697228 MsG0880043144.01.T01:intron 20.0%
!! TTTAAAAATTCTGAGTAAGA+GGG - Chr8:19696618-19696637 None:intergenic 20.0%
!!! AAAGTTATGATTTTTTCTCA+TGG + Chr8:19696713-19696732 MsG0880043144.01.T01:intron 20.0%
!!! ACAAAAATGCTTTTTACATT+TGG - Chr8:19695450-19695469 None:intergenic 20.0%
!!! AGTTTTAATCTTTTTCCAAT+TGG + Chr8:19698116-19698135 MsG0880043144.01.T01:intron 20.0%
!!! ATATCATAACCGTTTTAAAT+GGG - Chr8:19696082-19696101 None:intergenic 20.0%
!!! ATTTTGACTTTTTGTGATTA+TGG + Chr8:19698373-19698392 MsG0880043144.01.T01:intron 20.0%
!!! CAAAAATGCTTTTTACATTT+GGG - Chr8:19695449-19695468 None:intergenic 20.0%
!!! CAACAATTTTTGGTTAATTT+TGG + Chr8:19698521-19698540 MsG0880043144.01.T01:intron 20.0%
!!! CATGAGTTTTTTTTTTTTGT+TGG + Chr8:19698660-19698679 MsG0880043144.01.T01:intron 20.0%
!!! CTGTTTTTGATTGAAAAATT+AGG + Chr8:19698162-19698181 MsG0880043144.01.T01:intron 20.0%
!!! GTTACACTTATTGTAAATTT+TGG + Chr8:19696803-19696822 MsG0880043144.01.T01:intron 20.0%
!!! GTTTTAATCTTTTTCCAATT+GGG + Chr8:19698117-19698136 MsG0880043144.01.T01:intron 20.0%
!!! TAATATTTTTTTTTTGGGTG+GGG + Chr8:19696394-19696413 MsG0880043144.01.T01:intron 20.0%
!!! TCATACTTTTATCCTAAAAT+AGG - Chr8:19697293-19697312 None:intergenic 20.0%
!!! TTGTTTCTTATAGTAATGAT+CGG + Chr8:19697448-19697467 MsG0880043144.01.T01:intron 20.0%
!!! TTTTTACTAATAATTGAGAC+AGG - Chr8:19697154-19697173 None:intergenic 20.0%
! AAACGACTTATAATATGGAA+GGG - Chr8:19696902-19696921 None:intergenic 25.0%
! AGAAAAACATTGAAATTGCA+AGG - Chr8:19698822-19698841 None:intergenic 25.0%
! AGTTTGAATCCCATTTAAAA+CGG + Chr8:19696070-19696089 MsG0880043144.01.T01:intron 25.0%
! GTTGATCCTTTAAATATCAA+TGG - Chr8:19695519-19695538 None:intergenic 25.0%
! TATAATCTTAAACAATCTGG+TGG + Chr8:19696190-19696209 MsG0880043144.01.T01:intron 25.0%
! TCACTTCTTAATTGTATGTA+TGG + Chr8:19697110-19697129 MsG0880043144.01.T01:intron 25.0%
! TGTCAAAAATTTGTGAACTT+GGG + Chr8:19696861-19696880 MsG0880043144.01.T01:intron 25.0%
! TTATTGATGAAACCTATTGA+AGG - Chr8:19698937-19698956 None:intergenic 25.0%
! TTGTCAAAAATTTGTGAACT+TGG + Chr8:19696860-19696879 MsG0880043144.01.T01:intron 25.0%
! TTTCGAAACGACTTATAATA+TGG - Chr8:19696907-19696926 None:intergenic 25.0%
!! AGTCAAAAATGACCTATTTT+AGG + Chr8:19697278-19697297 MsG0880043144.01.T01:intron 25.0%
!! ATTTGAGAAGCAACAATTTT+TGG + Chr8:19698511-19698530 MsG0880043144.01.T01:intron 25.0%
!! ATTTTCTATAGGAAATGAGT+CGG - Chr8:19695996-19696015 None:intergenic 25.0%
!! CTTTAAAAATTCTGAGTAAG+AGG - Chr8:19696619-19696638 None:intergenic 25.0%
!! GAATTTTATGTCCATTTTCA+TGG + Chr8:19698230-19698249 MsG0880043144.01.T01:CDS 25.0%
!!! AATATTTTTTTTTTGGGTGG+GGG + Chr8:19696395-19696414 MsG0880043144.01.T01:intron 25.0%
!!! ACTTAATTGGTTTTTAGGAT+AGG - Chr8:19696346-19696365 None:intergenic 25.0%
!!! CATATCATAACCGTTTTAAA+TGG - Chr8:19696083-19696102 None:intergenic 25.0%
!!! TACATAACGTGTTTTGAAAT+CGG - Chr8:19695380-19695399 None:intergenic 25.0%
AAAAATTATTCAATGCGGGA+CGG + Chr8:19695633-19695652 MsG0880043144.01.T01:intron 30.0%
AAAGGGAAATTACTTTCACT+GGG - Chr8:19698257-19698276 None:intergenic 30.0%
AGAGTGAAAATCAGAAACTT+AGG - Chr8:19698717-19698736 None:intergenic 30.0%
AGCTTGACTTTGTAAGTTTA+AGG + Chr8:19696043-19696062 MsG0880043144.01.T01:intron 30.0%
AGTAAGAGGGTAATTTAACA+CGG - Chr8:19696605-19696624 None:intergenic 30.0%
ATAACATCTCATCAACCTTT+GGG - Chr8:19698968-19698987 None:intergenic 30.0%
ATTACTAATTTGGCACATGA+CGG + Chr8:19696524-19696543 MsG0880043144.01.T01:intron 30.0%
GAAACGACTTATAATATGGA+AGG - Chr8:19696903-19696922 None:intergenic 30.0%
GCAACTGAAAGAAGTAAAAT+TGG - Chr8:19697883-19697902 None:intergenic 30.0%
GCTTGACTTTGTAAGTTTAA+GGG + Chr8:19696044-19696063 MsG0880043144.01.T01:intron 30.0%
GGTTAAACTGTGACAAAATT+GGG - Chr8:19696584-19696603 None:intergenic 30.0%
GTTAAACTGTGACAAAATTG+GGG - Chr8:19696583-19696602 None:intergenic 30.0%
TAGGATGATGAGTGATTATA+AGG + Chr8:19698181-19698200 MsG0880043144.01.T01:intron 30.0%
TCAATAAGTTTATCACCCAA+AGG + Chr8:19698950-19698969 MsG0880043144.01.T01:CDS 30.0%
TTCCTATAGAAAATGTCCAA+CGG + Chr8:19696002-19696021 MsG0880043144.01.T01:intron 30.0%
TTTACCATTGAGATAACACT+AGG - Chr8:19695811-19695830 None:intergenic 30.0%
TTTCAAAACACGTTATGTAC+TGG + Chr8:19695381-19695400 MsG0880043144.01.T01:intron 30.0%
! AGATTTCAATTTCTAGAGGA+AGG + Chr8:19695856-19695875 MsG0880043144.01.T01:intron 30.0%
! CGTAAGATTTCAATTTCTAG+AGG + Chr8:19695852-19695871 MsG0880043144.01.T01:intron 30.0%
! GATTTCCCTTTTGCTTATTA+TGG + Chr8:19698583-19698602 MsG0880043144.01.T01:intron 30.0%
!! AATGCTTTTTACATTTGGGA+CGG - Chr8:19695445-19695464 None:intergenic 30.0%
!!! ACATAACGTGTTTTGAAATC+GGG - Chr8:19695379-19695398 None:intergenic 30.0%
!!! CTGGAACTTAATTGGTTTTT+AGG - Chr8:19696351-19696370 None:intergenic 30.0%
AAAACACGTTATGTACTGGA+CGG + Chr8:19695385-19695404 MsG0880043144.01.T01:intron 35.0%
AAAATTATTCAATGCGGGAC+GGG + Chr8:19695634-19695653 MsG0880043144.01.T01:intron 35.0%
AAGACAGCAAGCAGAAAATT+AGG - Chr8:19697858-19697877 None:intergenic 35.0%
AAGGTGGAAATGATTAACGA+TGG + Chr8:19698200-19698219 MsG0880043144.01.T01:CDS 35.0%
ACGGGTATGTATATGAGAAT+CGG + Chr8:19695734-19695753 MsG0880043144.01.T01:intron 35.0%
AGTATGCACTGGAACTTAAT+TGG - Chr8:19696359-19696378 None:intergenic 35.0%
AGTCAAATAAGAGAATCGAG+TGG - Chr8:19696319-19696338 None:intergenic 35.0%
ATGTATATGAGAATCGGGTA+TGG + Chr8:19695740-19695759 MsG0880043144.01.T01:intron 35.0%
ATGTATTACAACGTTGCTCT+TGG + Chr8:19695583-19695602 MsG0880043144.01.T01:intron 35.0%
CATAACATCTCATCAACCTT+TGG - Chr8:19698969-19698988 None:intergenic 35.0%
CCTATTGAAGGAGACTTATA+AGG - Chr8:19698925-19698944 None:intergenic 35.0%
CCTTATAAGTCTCCTTCAAT+AGG + Chr8:19698922-19698941 MsG0880043144.01.T01:CDS 35.0%
CGGTTAAACTGTGACAAAAT+TGG - Chr8:19696585-19696604 None:intergenic 35.0%
GAAAGGGAAATTACTTTCAC+TGG - Chr8:19698258-19698277 None:intergenic 35.0%
GATGATGAGTGATTATAAGG+TGG + Chr8:19698184-19698203 MsG0880043144.01.T01:CDS 35.0%
TAATTCGGATAAGTATGCAC+TGG - Chr8:19696370-19696389 None:intergenic 35.0%
TCCTATAGAAAATGTCCAAC+GGG + Chr8:19696003-19696022 MsG0880043144.01.T01:intron 35.0%
TGTATATGAGAATCGGGTAT+GGG + Chr8:19695741-19695760 MsG0880043144.01.T01:intron 35.0%
TGTATTACAACGTTGCTCTT+GGG + Chr8:19695584-19695603 MsG0880043144.01.T01:intron 35.0%
TTATAAGGATAAGCATCCTC+CGG - Chr8:19698910-19698929 None:intergenic 35.0%
! TGTTTTTCTCATCCATGTGA+TGG + Chr8:19698833-19698852 MsG0880043144.01.T01:intron 35.0%
!! ATGCTTTTTACATTTGGGAC+GGG - Chr8:19695444-19695463 None:intergenic 35.0%
!! CTTGTTGTTCTCTTTCTGTT+TGG - Chr8:19698005-19698024 None:intergenic 35.0%
!!! CATAACGTGTTTTGAAATCG+GGG - Chr8:19695378-19695397 None:intergenic 35.0%
!!! TCAATTTTTTCATCCCCGTT+GGG + Chr8:19695699-19695718 MsG0880043144.01.T01:intron 35.0%
!!! TTCAATTTTTTCATCCCCGT+TGG + Chr8:19695698-19695717 MsG0880043144.01.T01:intron 35.0%
AAACACGTTATGTACTGGAC+GGG + Chr8:19695386-19695405 MsG0880043144.01.T01:intron 40.0%
ATAACACTAGGCATGGCAAT+GGG - Chr8:19695799-19695818 None:intergenic 40.0%
ATACCCAAACCCAGTCAAAA+CGG - Chr8:19695342-19695361 None:intergenic 40.0%
CATGCCTAGTGTTATCTCAA+TGG + Chr8:19695804-19695823 MsG0880043144.01.T01:intron 40.0%
CATTGAGATAACACTAGGCA+TGG - Chr8:19695806-19695825 None:intergenic 40.0%
CGGGTATGTATATGAGAATC+GGG + Chr8:19695735-19695754 MsG0880043144.01.T01:intron 40.0%
GAAAGTAAGAGTTGAGCTAC+CGG + Chr8:19698888-19698907 MsG0880043144.01.T01:CDS 40.0%
GTATATGAGAATCGGGTATG+GGG + Chr8:19695742-19695761 MsG0880043144.01.T01:intron 40.0%
GTATTACAACGTTGCTCTTG+GGG + Chr8:19695585-19695604 MsG0880043144.01.T01:intron 40.0%
GTCAAATTCAGTGACCCAAT+TGG - Chr8:19698134-19698153 None:intergenic 40.0%
TATTATGGGGCCAAAAGCTA+AGG - Chr8:19696835-19696854 None:intergenic 40.0%
TGTGAACTTGGGCACAAAAA+TGG + Chr8:19696872-19696891 MsG0880043144.01.T01:intron 40.0%
TTAAGGGAAGAAGAGGATTG+AGG - Chr8:19697921-19697940 None:intergenic 40.0%
TTTCACTGGGTCCATGAAAA+TGG - Chr8:19698244-19698263 None:intergenic 40.0%
! ACCCGTTGGACATTTTCTAT+AGG - Chr8:19696007-19696026 None:intergenic 40.0%
! TTGCTTGGTGAAGACATGTT+TGG - Chr8:19698030-19698049 None:intergenic 40.0%
! TTTACATTTGGGACGGGTTT+GGG - Chr8:19695438-19695457 None:intergenic 40.0%
!! TTGGACTCAACCTTAGCTTT+TGG + Chr8:19696822-19696841 MsG0880043144.01.T01:intron 40.0%
!! TTTTACATTTGGGACGGGTT+TGG - Chr8:19695439-19695458 None:intergenic 40.0%
!! TTTTGACTGGGTTTGGGTAT+GGG + Chr8:19695342-19695361 MsG0880043144.01.T01:CDS 40.0%
AGAGAGAGAGAGAGAGGTTA+AGG - Chr8:19697938-19697957 None:intergenic 45.0%
AGAGAGGTTAAGGGAAGAAG+AGG - Chr8:19697928-19697947 None:intergenic 45.0%
ATGTCAGGTCCTTATCAAGG+AGG + Chr8:19698859-19698878 MsG0880043144.01.T01:intron 45.0%
CCAACGGGTGTGTTAGATAA+TGG + Chr8:19696018-19696037 MsG0880043144.01.T01:intron 45.0%
CCATTATCTAACACACCCGT+TGG - Chr8:19696021-19696040 None:intergenic 45.0%
CCGAACCAAACCCAATTTGA+CGG + Chr8:19695310-19695329 MsG0880043144.01.T01:CDS 45.0%
CGAACCAAACCCAATTTGAC+GGG + Chr8:19695311-19695330 MsG0880043144.01.T01:CDS 45.0%
CTCATGTCAGGTCCTTATCA+AGG + Chr8:19698856-19698875 MsG0880043144.01.T01:intron 45.0%
GAAACCCGTCAAATTGGGTT+TGG - Chr8:19695318-19695337 None:intergenic 45.0%
GAGAGAGAGAGAGAGGTTAA+GGG - Chr8:19697937-19697956 None:intergenic 45.0%
GATAACACTAGGCATGGCAA+TGG - Chr8:19695800-19695819 None:intergenic 45.0%
TAACACTAGGCATGGCAATG+GGG - Chr8:19695798-19695817 None:intergenic 45.0%
TACCCAAACCCAGTCAAAAC+GGG - Chr8:19695341-19695360 None:intergenic 45.0%
TATGACACGTGTAACAGACC+TGG + Chr8:19696548-19696567 MsG0880043144.01.T01:intron 45.0%
TTCCACACACCTCCTTGATA+AGG - Chr8:19698871-19698890 None:intergenic 45.0%
! AAATTGGGGTCTTGTGTTCC+AGG - Chr8:19696569-19696588 None:intergenic 45.0%
! CCGTCAAATTGGGTTTGGTT+CGG - Chr8:19695313-19695332 None:intergenic 45.0%
! CGTCAAATTGGGTTTGGTTC+GGG - Chr8:19695312-19695331 None:intergenic 45.0%
! TTTTCATCCCCGTTGGGTAT+GGG + Chr8:19695705-19695724 MsG0880043144.01.T01:intron 45.0%
! TTTTTCATCCCCGTTGGGTA+TGG + Chr8:19695704-19695723 MsG0880043144.01.T01:intron 45.0%
!!! GTTTTGACTGGGTTTGGGTA+TGG + Chr8:19695341-19695360 MsG0880043144.01.T01:CDS 45.0%
!!! AAAAAAATATTTTTTTCATA+AGG - Chr8:19698313-19698332 None:intergenic 5.0%
!!! TTTTTTTTTTTTTCTATTAA+GGG + Chr8:19698332-19698351 MsG0880043144.01.T01:intron 5.0%
!!! TTTTTTTTTTTTTTCTATTA+AGG + Chr8:19698331-19698350 MsG0880043144.01.T01:intron 5.0%
AACGGGGAAACCCGTCAAAT+TGG - Chr8:19695324-19695343 None:intergenic 50.0%
ACCCAAACCCAGTCAAAACG+GGG - Chr8:19695340-19695359 None:intergenic 50.0%
ACCTGACATGAGCCATCACA+TGG - Chr8:19698848-19698867 None:intergenic 50.0%
ACGGGGAAACCCGTCAAATT+GGG - Chr8:19695323-19695342 None:intergenic 50.0%
ACTGGGTTTGGGTATGGGTA+TGG + Chr8:19695347-19695366 MsG0880043144.01.T01:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - Chr8:19697942-19697961 None:intergenic 50.0%
AGTAAGAGTTGAGCTACCGG+AGG + Chr8:19698891-19698910 MsG0880043144.01.T01:CDS 50.0%
ATGAGAATCGGGTATGGGGA+CGG + Chr8:19695746-19695765 MsG0880043144.01.T01:intron 50.0%
CGTTACCTACCCATACCCAA+CGG - Chr8:19695717-19695736 None:intergenic 50.0%
CGTTGGGTATGGGTAGGTAA+CGG + Chr8:19695715-19695734 MsG0880043144.01.T01:intron 50.0%
GTTACCTACCCATACCCAAC+GGG - Chr8:19695716-19695735 None:intergenic 50.0%
GTTGGGTATGGGTAGGTAAC+GGG + Chr8:19695716-19695735 MsG0880043144.01.T01:intron 50.0%
TACAACGTTGCTCTTGGGGA+TGG + Chr8:19695589-19695608 MsG0880043144.01.T01:intron 50.0%
TATTCAATGCGGGACGGGAT+GGG + Chr8:19695639-19695658 MsG0880043144.01.T01:intron 50.0%
TCCATGTGATGGCTCATGTC+AGG + Chr8:19698844-19698863 MsG0880043144.01.T01:intron 50.0%
TGGCAACAAACTCATACCCG+CGG + Chr8:19695279-19695298 MsG0880043144.01.T01:CDS 50.0%
TTACCTACCCATACCCAACG+GGG - Chr8:19695715-19695734 None:intergenic 50.0%
TTATTCAATGCGGGACGGGA+TGG + Chr8:19695638-19695657 MsG0880043144.01.T01:intron 50.0%
! ATTTGGGACGGGTTTGGGTA+TGG - Chr8:19695433-19695452 None:intergenic 50.0%
! GTCCTTATCAAGGAGGTGTG+TGG + Chr8:19698866-19698885 MsG0880043144.01.T01:CDS 50.0%
! TTTGGGACGGGTTTGGGTAT+GGG - Chr8:19695432-19695451 None:intergenic 50.0%
!! AAATTGGGTTTGGTTCGGGC+GGG - Chr8:19695308-19695327 None:intergenic 50.0%
!! CAAATTGGGTTTGGTTCGGG+CGG - Chr8:19695309-19695328 None:intergenic 50.0%
!!! TCCCCGTTTTGACTGGGTTT+GGG + Chr8:19695336-19695355 MsG0880043144.01.T01:CDS 50.0%
!!! TTCCCCGTTTTGACTGGGTT+TGG + Chr8:19695335-19695354 MsG0880043144.01.T01:CDS 50.0%
ACCAAGCAAGCGACGAGAGA+TGG + Chr8:19698041-19698060 MsG0880043144.01.T01:intron 55.0%
ACGGGTTTGGGTATGGGTTC+GGG - Chr8:19695426-19695445 None:intergenic 55.0%
ATTCAATGCGGGACGGGATG+GGG + Chr8:19695640-19695659 MsG0880043144.01.T01:intron 55.0%
TCCATCTCTCGTCGCTTGCT+TGG - Chr8:19698045-19698064 None:intergenic 55.0%
TGAGAATCGGGTATGGGGAC+GGG + Chr8:19695747-19695766 MsG0880043144.01.T01:intron 55.0%
TTTGGGTATGGGTTCGGGGT+GGG - Chr8:19695421-19695440 None:intergenic 55.0%
! GACGGGTTTGGGTATGGGTT+CGG - Chr8:19695427-19695446 None:intergenic 55.0%
!! ACGGGTTTCCCCGTTTTGAC+TGG + Chr8:19695329-19695348 MsG0880043144.01.T01:CDS 55.0%
!!! CGGGTTTCCCCGTTTTGACT+GGG + Chr8:19695330-19695349 MsG0880043144.01.T01:CDS 55.0%
ACTAGGCATGGCAATGGGGC+GGG - Chr8:19695794-19695813 None:intergenic 60.0%
CACTAGGCATGGCAATGGGG+CGG - Chr8:19695795-19695814 None:intergenic 60.0%
CATCCCCGTTGGGTATGGGT+AGG + Chr8:19695709-19695728 MsG0880043144.01.T01:intron 60.0%
CGGGTTTGGGTATGGGTTCG+GGG - Chr8:19695425-19695444 None:intergenic 60.0%
GAGAATCGGGTATGGGGACG+GGG + Chr8:19695748-19695767 MsG0880043144.01.T01:intron 60.0%
GTTTGGGTATGGGTTCGGGG+TGG - Chr8:19695422-19695441 None:intergenic 60.0%
AATCCCATCCCCGTCCCCGA+CGG - Chr8:19695680-19695699 None:intergenic 65.0%
ATCCTGAACCCGTCGGGGAC+GGG + Chr8:19695668-19695687 MsG0880043144.01.T01:intron 65.0%
ATCGGGTATGGGGACGGGGA+AGG + Chr8:19695752-19695771 MsG0880043144.01.T01:intron 65.0%
CTAGGCATGGCAATGGGGCG+GGG - Chr8:19695793-19695812 None:intergenic 65.0%
GATCCTGAACCCGTCGGGGA+CGG + Chr8:19695667-19695686 MsG0880043144.01.T01:intron 65.0%
!! TTGGTTCGGGCGGGTAACCG+CGG - Chr8:19695299-19695318 None:intergenic 65.0%
AACCCGTCGGGGACGGGGAT+GGG + Chr8:19695674-19695693 MsG0880043144.01.T01:intron 70.0%
AATGCGGGACGGGATGGGGC+GGG + Chr8:19695644-19695663 MsG0880043144.01.T01:intron 70.0%
ATCCCATCCCCGTCCCCGAC+GGG - Chr8:19695679-19695698 None:intergenic 70.0%
CAATGCGGGACGGGATGGGG+CGG + Chr8:19695643-19695662 MsG0880043144.01.T01:intron 70.0%
CATGGCAATGGGGCGGGGTG+GGG - Chr8:19695788-19695807 None:intergenic 70.0%
CGGGGATCCTGAACCCGTCG+GGG + Chr8:19695663-19695682 MsG0880043144.01.T01:intron 70.0%
GCATGGCAATGGGGCGGGGT+GGG - Chr8:19695789-19695808 None:intergenic 70.0%
GCGGGGATCCTGAACCCGTC+GGG + Chr8:19695662-19695681 MsG0880043144.01.T01:intron 70.0%
GGCGGGGATCCTGAACCCGT+CGG + Chr8:19695661-19695680 MsG0880043144.01.T01:intron 70.0%
TCCTGAACCCGTCGGGGACG+GGG + Chr8:19695669-19695688 MsG0880043144.01.T01:intron 70.0%
! TGGTTCGGGCGGGTAACCGC+GGG - Chr8:19695298-19695317 None:intergenic 70.0%
ATGCGGGACGGGATGGGGCG+GGG + Chr8:19695645-19695664 MsG0880043144.01.T01:intron 75.0%
CAATGGGGCGGGGTGGGGAC+GGG - Chr8:19695783-19695802 None:intergenic 75.0%
GAACCCGTCGGGGACGGGGA+TGG + Chr8:19695673-19695692 MsG0880043144.01.T01:intron 75.0%
GCAATGGGGCGGGGTGGGGA+CGG - Chr8:19695784-19695803 None:intergenic 75.0%
GGCATGGCAATGGGGCGGGG+TGG - Chr8:19695790-19695809 None:intergenic 75.0%
! TCCCCGTCCCCGACGGGTTC+AGG - Chr8:19695673-19695692 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 19695278 19699050 19695278 ID=MsG0880043144.01;Name=MsG0880043144.01
Chr8 mRNA 19695278 19699050 19695278 ID=MsG0880043144.01.T01;Parent=MsG0880043144.01;Name=MsG0880043144.01.T01;_AED=0.59;_eAED=0.59;_QI=0|0.5|0.33|0.66|0.5|0.66|3|0|116
Chr8 exon 19695278 19695363 19695278 ID=MsG0880043144.01.T01:exon:3945;Parent=MsG0880043144.01.T01
Chr8 exon 19698184 19698263 19698184 ID=MsG0880043144.01.T01:exon:3946;Parent=MsG0880043144.01.T01
Chr8 exon 19698866 19699050 19698866 ID=MsG0880043144.01.T01:exon:3947;Parent=MsG0880043144.01.T01
Chr8 CDS 19695278 19695363 19695278 ID=MsG0880043144.01.T01:cds;Parent=MsG0880043144.01.T01
Chr8 CDS 19698184 19698263 19698184 ID=MsG0880043144.01.T01:cds;Parent=MsG0880043144.01.T01
Chr8 CDS 19698866 19699050 19698866 ID=MsG0880043144.01.T01:cds;Parent=MsG0880043144.01.T01
Gene Sequence

>MsG0880043144.01.T01

ATGGCAACAAACTCATACCCGCGGTTACCCGCCCGAACCAAACCCAATTTGACGGGTTTCCCCGTTTTGACTGGGTTTGGGTATGGGATGATGAGTGATTATAAGGTGGAAATGATTAACGATGGAATGCAAGAATTTTATGTCCATTTTCATGGACCCAGTGAAAGTCCTTATCAAGGAGGTGTGTGGAAAGTAAGAGTTGAGCTACCGGAGGATGCTTATCCTTATAAGTCTCCTTCAATAGGTTTCATCAATAAGTTTATCACCCAAAGGTTGATGAGATGTTATGCTTCTTGTTTTAATGCATTGAAATTGTGTAGTTTGATTAGTTTACCTCACATGTTTTATTAA

Protein sequence

>MsG0880043144.01.T01

MATNSYPRLPARTKPNLTGFPVLTGFGYGMMSDYKVEMINDGMQEFYVHFHGPSESPYQGGVWKVRVELPEDAYPYKSPSIGFINKFITQRLMRCYASCFNALKLCSLISLPHMFY*