Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018450.01.T01 | RHN58602.1 | 80.09 | 442 | 49 | 4 | 1 | 412 | 5 | 437 | 0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018450.01.T01 | P39730 | 39.381 | 226 | 101 | 6 | 9 | 201 | 404 | 626 | 2.45E-37 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018450.01.T01 | A0A396HZ32 | 80.090 | 442 | 49 | 4 | 1 | 412 | 5 | 437 | 0.0 | 694 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002518.01 | MsG0480018450.01 | 0.844094 | 9.354351e-59 | 1.494021e-55 |
| MsG0480018450.01 | MsG0580024621.01 | 0.802740 | 4.861153e-49 | 2.399671e-46 |
| MsG0480018450.01 | MsG0580025435.01 | 0.800745 | 1.247587e-48 | 5.854515e-46 |
| MsG0480018450.01 | MsG0580026222.01 | 0.834761 | 2.486443e-56 | 2.979083e-53 |
| MsG0480018450.01 | MsG0580026631.01 | 0.803047 | 4.200865e-49 | 2.089872e-46 |
| MsG0480018450.01 | MsG0580027332.01 | 0.819987 | 8.701787e-53 | 6.799859e-50 |
| MsG0480018450.01 | MsG0780036498.01 | 0.810821 | 9.526172e-51 | 5.801394e-48 |
| MsG0480018450.01 | MsG0780039282.01 | 0.833964 | 3.940818e-56 | 4.610878e-53 |
| MsG0480018450.01 | MsG0780040767.01 | 0.803517 | 3.356273e-49 | 1.690107e-46 |
| MsG0480018450.01 | MsG0880043717.01 | 0.811250 | 7.689555e-51 | 4.736358e-48 |
| MsG0480018450.01 | MsG0880044644.01 | 0.803039 | 4.216994e-49 | 2.097496e-46 |
| MsG0480018450.01 | MsG0880044821.01 | 0.806151 | 9.454403e-50 | 5.094273e-47 |
| MsG0480018450.01 | MsG0880046772.01 | 0.801128 | 1.042288e-48 | 4.938950e-46 |
| MsG0380017312.01 | MsG0480018450.01 | 0.804477 | 2.120410e-49 | 1.094351e-46 |
| MsG0380017820.01 | MsG0480018450.01 | 0.832990 | 6.896371e-56 | 7.836696e-53 |
| MsG0380017821.01 | MsG0480018450.01 | 0.817213 | 3.705815e-52 | 2.682185e-49 |
| MsG0380017822.01 | MsG0480018450.01 | 0.832646 | 8.396350e-56 | 9.443114e-53 |
| MsG0280008759.01 | MsG0480018450.01 | 0.800235 | 1.584889e-48 | 7.341750e-46 |
| MsG0280009248.01 | MsG0480018450.01 | 0.821700 | 3.512801e-53 | 2.879014e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018450.01.T01 | MTR_4g011840 | 76.790 | 461 | 49 | 4 | 1 | 412 | 5 | 456 | 0.0 | 689 |
| MsG0480018450.01.T01 | MTR_7g100900 | 60.256 | 468 | 108 | 15 | 1 | 411 | 5 | 451 | 2.06e-168 | 479 |
| MsG0480018450.01.T01 | MTR_4g006320 | 44.948 | 287 | 136 | 6 | 4 | 280 | 56 | 330 | 4.11e-68 | 221 |
| MsG0480018450.01.T01 | MTR_1g099000 | 53.304 | 227 | 72 | 5 | 9 | 204 | 749 | 972 | 2.06e-67 | 233 |
| MsG0480018450.01.T01 | MTR_1g099000 | 65.730 | 178 | 48 | 2 | 238 | 412 | 1141 | 1308 | 1.59e-61 | 215 |
| MsG0480018450.01.T01 | MTR_1g098970 | 52.423 | 227 | 74 | 5 | 9 | 204 | 235 | 458 | 9.38e-66 | 224 |
| MsG0480018450.01.T01 | MTR_1g098970 | 61.236 | 178 | 56 | 2 | 238 | 412 | 627 | 794 | 1.48e-55 | 196 |
| MsG0480018450.01.T01 | MTR_7g102950 | 43.946 | 223 | 95 | 6 | 9 | 204 | 36 | 255 | 8.10e-50 | 172 |
| MsG0480018450.01.T01 | MTR_7g102950 | 43.946 | 223 | 95 | 6 | 9 | 204 | 36 | 255 | 1.47e-49 | 172 |
| MsG0480018450.01.T01 | MTR_7g101830 | 39.908 | 218 | 108 | 4 | 9 | 204 | 55 | 271 | 5.69e-41 | 150 |
| MsG0480018450.01.T01 | MTR_4g005290 | 35.906 | 298 | 111 | 9 | 9 | 250 | 39 | 312 | 8.84e-39 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018450.01.T01 | AT1G76810 | 48.458 | 227 | 83 | 5 | 9 | 204 | 704 | 927 | 1.24e-58 | 207 |
| MsG0480018450.01.T01 | AT1G76810 | 58.235 | 170 | 57 | 3 | 246 | 412 | 1104 | 1262 | 1.37e-46 | 172 |
| MsG0480018450.01.T01 | AT1G76720 | 46.256 | 227 | 88 | 5 | 9 | 204 | 627 | 850 | 2.72e-56 | 200 |
| MsG0480018450.01.T01 | AT1G76720 | 53.448 | 174 | 67 | 3 | 242 | 412 | 1014 | 1176 | 3.00e-42 | 159 |
| MsG0480018450.01.T01 | AT1G76720 | 46.256 | 227 | 88 | 5 | 9 | 204 | 660 | 883 | 2.95e-56 | 200 |
| MsG0480018450.01.T01 | AT1G76720 | 53.448 | 174 | 67 | 3 | 242 | 412 | 1047 | 1209 | 3.63e-42 | 159 |
| MsG0480018450.01.T01 | AT1G21160 | 44.196 | 224 | 91 | 5 | 9 | 201 | 496 | 716 | 1.18e-50 | 184 |
| MsG0480018450.01.T01 | AT1G21160 | 45.665 | 173 | 74 | 5 | 246 | 409 | 896 | 1057 | 2.46e-34 | 136 |
| MsG0480018450.01.T01 | AT2G27700 | 42.188 | 256 | 110 | 7 | 9 | 229 | 35 | 287 | 3.97e-50 | 176 |
| MsG0480018450.01.T01 | AT2G27700 | 42.353 | 255 | 110 | 7 | 9 | 229 | 35 | 286 | 1.08e-49 | 175 |
Find 82 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGCTTTATCAACCGGTTTA+AGG | 0.103803 | 4:-5008916 | None:intergenic |
| AAAATGTTTGGGTTGCATTT+TGG | 0.154754 | 4:+5009199 | MsG0480018450.01.T01:CDS |
| TTCGAAACTTGCACATATAT+TGG | 0.173849 | 4:+5008346 | MsG0480018450.01.T01:CDS |
| TCTATGTGATATTGCTATTT+TGG | 0.207722 | 4:+5007494 | MsG0480018450.01.T01:CDS |
| TATTGACTTACCTGGTATTA+TGG | 0.213056 | 4:-5009243 | None:intergenic |
| CGATAAGGATCCCATTGTTT+TGG | 0.278209 | 4:+5008541 | MsG0480018450.01.T01:CDS |
| ATTTGTGAAGAAATACAAAT+TGG | 0.285599 | 4:-5008854 | None:intergenic |
| TCACAAATGAACATTGATAT+TGG | 0.301802 | 4:+5008869 | MsG0480018450.01.T01:CDS |
| AAGGAACGACAGAAAATGTT+TGG | 0.306376 | 4:+5009187 | MsG0480018450.01.T01:CDS |
| GATTGTTGGCAGCAATTCTA+AGG | 0.310306 | 4:+5009168 | MsG0480018450.01.T01:intron |
| AAACCTGTTTCTTGCATCAT+AGG | 0.323098 | 4:+5007330 | MsG0480018450.01.T01:CDS |
| ATTCATCGTTGCCTTGAATA+AGG | 0.337327 | 4:+5007596 | MsG0480018450.01.T01:CDS |
| TGTGCAAGTTTCGAAGCTTC+AGG | 0.340247 | 4:-5008338 | None:intergenic |
| ACCAGAGTACGCTGCTATAT+TGG | 0.340677 | 4:+5008295 | MsG0480018450.01.T01:intron |
| CCTTTCTCCGCTTTATCAAC+CGG | 0.361422 | 4:-5008923 | None:intergenic |
| GTTTCATACTAGGCTCTCTA+AGG | 0.367084 | 4:+5007704 | MsG0480018450.01.T01:CDS |
| TCGAAACTTGCACATATATT+GGG | 0.368606 | 4:+5008347 | MsG0480018450.01.T01:CDS |
| CTGTTAAGCCACCGAGTAAT+CGG | 0.380654 | 4:+5007307 | MsG0480018450.01.T01:CDS |
| CAACTTTGTTTGCAGATTGT+TGG | 0.384315 | 4:+5009154 | MsG0480018450.01.T01:intron |
| AACAATAGAAATAACATGTC+CGG | 0.390586 | 4:-5007917 | None:intergenic |
| TGTTATTTCTATTGTTTAAG+TGG | 0.391085 | 4:+5007924 | MsG0480018450.01.T01:CDS |
| CGGTTTAAGGTTATTCTCAA+TGG | 0.393167 | 4:-5008903 | None:intergenic |
| AGCATTGTTGCAGCAGTCTA+AGG | 0.396661 | 4:+5007668 | MsG0480018450.01.T01:CDS |
| ATTTGTGAATCATGCTGTAT+TGG | 0.398751 | 4:-5007949 | None:intergenic |
| ACATAGTGCAAATCATCATT+AGG | 0.400091 | 4:-5008126 | None:intergenic |
| ATCTATTTGATCAATTTAAG+AGG | 0.410741 | 4:+5008402 | MsG0480018450.01.T01:CDS |
| ATACCTTTAAAATGCCTTGA+AGG | 0.412345 | 4:-5008574 | None:intergenic |
| TTTGTGAATCATGCTGTATT+GGG | 0.416396 | 4:-5007948 | None:intergenic |
| TTGTGCCCACAAGTGCAATA+AGG | 0.420327 | 4:+5007808 | MsG0480018450.01.T01:CDS |
| GAATCACATGAACAACAATA+AGG | 0.424292 | 4:+5008451 | MsG0480018450.01.T01:CDS |
| GCTTTACGAAATGGAGCATT+GGG | 0.433943 | 4:-5007648 | None:intergenic |
| AAATTTCGTCTTCAACGATA+AGG | 0.441070 | 4:+5008526 | MsG0480018450.01.T01:CDS |
| ATGCTTCTCGGTTGTATTCG+AGG | 0.451877 | 4:+5007375 | MsG0480018450.01.T01:CDS |
| GCTTCAGGGGTGACTGCGAC+AGG | 0.453091 | 4:-5008323 | None:intergenic |
| TCACCTATGATGCAAGAAAC+AGG | 0.455949 | 4:-5007333 | None:intergenic |
| CATTGAGAATAACCTTAAAC+CGG | 0.464349 | 4:+5008904 | MsG0480018450.01.T01:CDS |
| ACCGGCAAAACTATGCTTCT+CGG | 0.465472 | 4:+5007363 | MsG0480018450.01.T01:CDS |
| AGGAACGACAGAAAATGTTT+GGG | 0.465561 | 4:+5009188 | MsG0480018450.01.T01:CDS |
| CTGCACATATTCATGATTGT+AGG | 0.467037 | 4:-5007975 | None:intergenic |
| TTGGAAGTAGATATCCTTCA+AGG | 0.476129 | 4:+5008560 | MsG0480018450.01.T01:CDS |
| TGCAACAATGCTTTACGAAA+TGG | 0.479722 | 4:-5007657 | None:intergenic |
| ATATCTACTTCCAAAACAAT+GGG | 0.482910 | 4:-5008551 | None:intergenic |
| TGCTTTACGAAATGGAGCAT+TGG | 0.484822 | 4:-5007649 | None:intergenic |
| GTTGACATTATGCATGATGA+TGG | 0.487389 | 4:+5007519 | MsG0480018450.01.T01:CDS |
| GCATACCTTATTGCACTTGT+GGG | 0.487793 | 4:-5007813 | None:intergenic |
| AACACACCAAGCAAGGGTTT+AGG | 0.488857 | 4:+5007471 | MsG0480018450.01.T01:CDS |
| CCTGCGCAAGATTGACTTGG+AGG | 0.494326 | 4:-5008160 | None:intergenic |
| CCGGTTGATAAAGCGGAGAA+AGG | 0.494425 | 4:+5008923 | MsG0480018450.01.T01:CDS |
| AATCATGTCGACCTTATTCA+AGG | 0.495710 | 4:-5007607 | None:intergenic |
| GGCAACGATGAATTGTTTGT+TGG | 0.500980 | 4:-5007586 | None:intergenic |
| GGCATACCTTATTGCACTTG+TGG | 0.506263 | 4:-5007814 | None:intergenic |
| GATATCTACTTCCAAAACAA+TGG | 0.509316 | 4:-5008552 | None:intergenic |
| TATTCATATTTCAGCGGTGA+AGG | 0.509412 | 4:+5007890 | MsG0480018450.01.T01:intron |
| TCGACCTAGTAGTTTGCCTA+TGG | 0.512473 | 4:+5008098 | MsG0480018450.01.T01:CDS |
| TCTTGATAACACACCAAGCA+AGG | 0.526408 | 4:+5007464 | MsG0480018450.01.T01:CDS |
| GTGCAAGTTTCGAAGCTTCA+GGG | 0.530739 | 4:-5008337 | None:intergenic |
| ACAATAGAAATAACATGTCC+GGG | 0.531996 | 4:-5007916 | None:intergenic |
| CAAGAAAGATTCTGCTGATG+AGG | 0.532225 | 4:+5008481 | MsG0480018450.01.T01:CDS |
| AGGGCAGCAAGTAGTCATTA+CGG | 0.536517 | 4:+5008943 | MsG0480018450.01.T01:CDS |
| CGGTTGATAAAGCGGAGAAA+GGG | 0.545541 | 4:+5008924 | MsG0480018450.01.T01:CDS |
| CGTCTTTCAGCATCACCGGC+AGG | 0.549665 | 4:-5007432 | None:intergenic |
| TTGACCATAGGCAAACTACT+AGG | 0.550315 | 4:-5008102 | None:intergenic |
| CCTCCAAGTCAATCTTGCGC+AGG | 0.551606 | 4:+5008160 | MsG0480018450.01.T01:CDS |
| CTACAATCATGAATATGTGC+AGG | 0.552564 | 4:+5007976 | MsG0480018450.01.T01:CDS |
| CATAGACCTAAACCCTTGCT+TGG | 0.554345 | 4:-5007477 | None:intergenic |
| GAAACAGGTTTCCGATTACT+CGG | 0.554837 | 4:-5007318 | None:intergenic |
| TTTATTATTATTGACTTACC+TGG | 0.555129 | 4:-5009251 | None:intergenic |
| TTCAAGATGAGTTTCATACT+AGG | 0.555945 | 4:+5007694 | MsG0480018450.01.T01:CDS |
| AGGTCGACATGATTCATGAC+TGG | 0.563144 | 4:+5007616 | MsG0480018450.01.T01:CDS |
| CCTTAAACCGGTTGATAAAG+CGG | 0.563826 | 4:+5008916 | MsG0480018450.01.T01:CDS |
| AAACCTGCGCAAGATTGACT+TGG | 0.565875 | 4:-5008163 | None:intergenic |
| TGATGCTGAAAGACGTATGC+TGG | 0.569840 | 4:+5007440 | MsG0480018450.01.T01:CDS |
| CATACGTCTTTCAGCATCAC+CGG | 0.573829 | 4:-5007436 | None:intergenic |
| TTTCAGCGGTGAAGGAATCC+CGG | 0.575451 | 4:+5007898 | MsG0480018450.01.T01:intron |
| TTTAAGGTTATTCTCAATGG+AGG | 0.578938 | 4:-5008900 | None:intergenic |
| CTTGATAACACACCAAGCAA+GGG | 0.607647 | 4:+5007465 | MsG0480018450.01.T01:CDS |
| TCATCATTAGGCTTGACCAT+AGG | 0.609720 | 4:-5008114 | None:intergenic |
| GTTTCGCATTTCAAGATACA+CGG | 0.612835 | 4:+5007729 | MsG0480018450.01.T01:CDS |
| AACTTGTAAGCCATAATACC+AGG | 0.629872 | 4:+5009233 | MsG0480018450.01.T01:CDS |
| ATCATAGGTGATGCTCACAC+CGG | 0.647739 | 4:+5007345 | MsG0480018450.01.T01:CDS |
| TGCAAGTTTCGAAGCTTCAG+GGG | 0.660254 | 4:-5008336 | None:intergenic |
| ACAGGTTTCCGATTACTCGG+TGG | 0.695295 | 4:-5007315 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATAAAAACAAAACAAT+TGG | + | Chr4:5007768-5007787 | MsG0480018450.01.T01:CDS | 10.0% |
| !! | TATAATACAAATCAATAAGT+AGG | - | Chr4:5007838-5007857 | None:intergenic | 15.0% |
| !! | ATATCTCAAATTCCATTTAT+TGG | - | Chr4:5008995-5009014 | None:intergenic | 20.0% |
| !! | ATCTATTTGATCAATTTAAG+AGG | + | Chr4:5008402-5008421 | MsG0480018450.01.T01:CDS | 20.0% |
| !! | ATTTGTGAAGAAATACAAAT+TGG | - | Chr4:5008857-5008876 | None:intergenic | 20.0% |
| !! | TATAAAAACAAAACAATTGG+AGG | + | Chr4:5007771-5007790 | MsG0480018450.01.T01:CDS | 20.0% |
| !! | TGAACTAGAATAATAATAAG+CGG | - | Chr4:5008014-5008033 | None:intergenic | 20.0% |
| !!! | AATAAATGGAATTTGAGATA+TGG | + | Chr4:5008994-5009013 | MsG0480018450.01.T01:intron | 20.0% |
| !!! | ACTAGTTTATGATAAAACTA+TGG | - | Chr4:5009108-5009127 | None:intergenic | 20.0% |
| !!! | TGTTATTTCTATTGTTTAAG+TGG | + | Chr4:5007924-5007943 | MsG0480018450.01.T01:CDS | 20.0% |
| ! | AACAATAGAAATAACATGTC+CGG | - | Chr4:5007920-5007939 | None:intergenic | 25.0% |
| ! | ATATCTACTTCCAAAACAAT+GGG | - | Chr4:5008554-5008573 | None:intergenic | 25.0% |
| ! | TACTCAAGATTATGAAAACT+CGG | + | Chr4:5008244-5008263 | MsG0480018450.01.T01:intron | 25.0% |
| ! | TCACAAATGAACATTGATAT+TGG | + | Chr4:5008869-5008888 | MsG0480018450.01.T01:CDS | 25.0% |
| ! | TCTTTCTATTCATATTTCAG+CGG | + | Chr4:5007884-5007903 | MsG0480018450.01.T01:intron | 25.0% |
| ! | TTAAGAAACATAATAGACCT+AGG | - | Chr4:5008678-5008697 | None:intergenic | 25.0% |
| !! | AAATTTAACAGCTTTAACCT+AGG | + | Chr4:5008658-5008677 | MsG0480018450.01.T01:intron | 25.0% |
| !! | TGGATTTTACATCCAATAAA+TGG | + | Chr4:5008980-5008999 | MsG0480018450.01.T01:intron | 25.0% |
| !!! | TACCATCGCTTTTTTTTATA+TGG | + | Chr4:5008746-5008765 | MsG0480018450.01.T01:intron | 25.0% |
| !!! | TCTATGTGATATTGCTATTT+TGG | + | Chr4:5007494-5007513 | MsG0480018450.01.T01:CDS | 25.0% |
| !!! | TGTCTGTTTTTAGTTATTTG+TGG | + | Chr4:5009082-5009101 | MsG0480018450.01.T01:intron | 25.0% |
| AAATTTCGTCTTCAACGATA+AGG | + | Chr4:5008526-5008545 | MsG0480018450.01.T01:CDS | 30.0% | |
| AACATTGTATTGCTTGCATT+GGG | + | Chr4:5008632-5008651 | MsG0480018450.01.T01:intron | 30.0% | |
| ACAATAGAAATAACATGTCC+GGG | - | Chr4:5007919-5007938 | None:intergenic | 30.0% | |
| ACATAGTGCAAATCATCATT+AGG | - | Chr4:5008129-5008148 | None:intergenic | 30.0% | |
| AGGAAAATGTGCTGAAAAAT+GGG | - | Chr4:5007415-5007434 | None:intergenic | 30.0% | |
| ATATTGTCTACATGACAGAT+TGG | + | Chr4:5008827-5008846 | MsG0480018450.01.T01:intron | 30.0% | |
| ATTTGTGAATCATGCTGTAT+TGG | - | Chr4:5007952-5007971 | None:intergenic | 30.0% | |
| CATTGAGAATAACCTTAAAC+CGG | + | Chr4:5008904-5008923 | MsG0480018450.01.T01:CDS | 30.0% | |
| GAATCACATGAACAACAATA+AGG | + | Chr4:5008451-5008470 | MsG0480018450.01.T01:CDS | 30.0% | |
| GACCATATAAAAAAAAGCGA+TGG | - | Chr4:5008751-5008770 | None:intergenic | 30.0% | |
| GATATCTACTTCCAAAACAA+TGG | - | Chr4:5008555-5008574 | None:intergenic | 30.0% | |
| TAACATTGTATTGCTTGCAT+TGG | + | Chr4:5008631-5008650 | MsG0480018450.01.T01:intron | 30.0% | |
| TCGAAACTTGCACATATATT+GGG | + | Chr4:5008347-5008366 | MsG0480018450.01.T01:CDS | 30.0% | |
| TTACGGTATGTGCTTAAAAT+TGG | + | Chr4:5008960-5008979 | MsG0480018450.01.T01:intron | 30.0% | |
| TTCAAGATGAGTTTCATACT+AGG | + | Chr4:5007694-5007713 | MsG0480018450.01.T01:CDS | 30.0% | |
| TTCGAAACTTGCACATATAT+TGG | + | Chr4:5008346-5008365 | MsG0480018450.01.T01:CDS | 30.0% | |
| TTTCTCAACATCACAATCAT+AGG | - | Chr4:5009039-5009058 | None:intergenic | 30.0% | |
| TTTGTGAATCATGCTGTATT+GGG | - | Chr4:5007951-5007970 | None:intergenic | 30.0% | |
| ! | TGCAATGCACAAAATTTGTT+TGG | + | Chr4:5008784-5008803 | MsG0480018450.01.T01:intron | 30.0% |
| ! | TTTAAGGTTATTCTCAATGG+AGG | - | Chr4:5008903-5008922 | None:intergenic | 30.0% |
| !! | ATACCTTTAAAATGCCTTGA+AGG | - | Chr4:5008577-5008596 | None:intergenic | 30.0% |
| !! | TATCCTTCAAGGCATTTTAA+AGG | + | Chr4:5008571-5008590 | MsG0480018450.01.T01:CDS | 30.0% |
| !!! | AAAATGTTTGGGTTGCATTT+TGG | + | Chr4:5009199-5009218 | MsG0480018450.01.T01:CDS | 30.0% |
| !!! | AAATGTTTGGGTTGCATTTT+GGG | + | Chr4:5009200-5009219 | MsG0480018450.01.T01:CDS | 30.0% |
| AAAAAGCGATGGTAGATCTA+TGG | - | Chr4:5008740-5008759 | None:intergenic | 35.0% | |
| AACTTGTAAGCCATAATACC+AGG | + | Chr4:5009233-5009252 | MsG0480018450.01.T01:CDS | 35.0% | |
| AAGGAACGACAGAAAATGTT+TGG | + | Chr4:5009187-5009206 | MsG0480018450.01.T01:CDS | 35.0% | |
| AATCATGTCGACCTTATTCA+AGG | - | Chr4:5007610-5007629 | None:intergenic | 35.0% | |
| ACATTGTATTGCTTGCATTG+GGG | + | Chr4:5008633-5008652 | MsG0480018450.01.T01:intron | 35.0% | |
| AGATTATGAAAACTCGGAGA+AGG | + | Chr4:5008250-5008269 | MsG0480018450.01.T01:intron | 35.0% | |
| AGGAACGACAGAAAATGTTT+GGG | + | Chr4:5009188-5009207 | MsG0480018450.01.T01:CDS | 35.0% | |
| ATTCATCGTTGCCTTGAATA+AGG | + | Chr4:5007596-5007615 | MsG0480018450.01.T01:CDS | 35.0% | |
| CAGGAAAATGTGCTGAAAAA+TGG | - | Chr4:5007416-5007435 | None:intergenic | 35.0% | |
| CTACAATCATGAATATGTGC+AGG | + | Chr4:5007976-5007995 | MsG0480018450.01.T01:CDS | 35.0% | |
| CTGCACATATTCATGATTGT+AGG | - | Chr4:5007978-5007997 | None:intergenic | 35.0% | |
| GGAAAATGTGCTGAAAAATG+GGG | - | Chr4:5007414-5007433 | None:intergenic | 35.0% | |
| GTTGACATTATGCATGATGA+TGG | + | Chr4:5007519-5007538 | MsG0480018450.01.T01:CDS | 35.0% | |
| GTTTCGCATTTCAAGATACA+CGG | + | Chr4:5007729-5007748 | MsG0480018450.01.T01:CDS | 35.0% | |
| TATTCATATTTCAGCGGTGA+AGG | + | Chr4:5007890-5007909 | MsG0480018450.01.T01:intron | 35.0% | |
| TGCAACAATGCTTTACGAAA+TGG | - | Chr4:5007660-5007679 | None:intergenic | 35.0% | |
| TTGGAAGTAGATATCCTTCA+AGG | + | Chr4:5008560-5008579 | MsG0480018450.01.T01:CDS | 35.0% | |
| ! | AAACCTGTTTCTTGCATCAT+AGG | + | Chr4:5007330-5007349 | MsG0480018450.01.T01:CDS | 35.0% |
| ! | CAACTTTGTTTGCAGATTGT+TGG | + | Chr4:5009154-5009173 | MsG0480018450.01.T01:intron | 35.0% |
| ! | CGGTTTAAGGTTATTCTCAA+TGG | - | Chr4:5008906-5008925 | None:intergenic | 35.0% |
| ! | TTTCTATTCAAGCATTGCAC+TGG | - | Chr4:5008276-5008295 | None:intergenic | 35.0% |
| !!! | GCATTTTAAAGGTATCGTTG+TGG | + | Chr4:5008582-5008601 | MsG0480018450.01.T01:intron | 35.0% |
| CAAGAAAGATTCTGCTGATG+AGG | + | Chr4:5008481-5008500 | MsG0480018450.01.T01:CDS | 40.0% | |
| CATCACAATCATAGGTCTGA+AGG | - | Chr4:5009031-5009050 | None:intergenic | 40.0% | |
| CATTGTATTGCTTGCATTGG+GGG | + | Chr4:5008634-5008653 | MsG0480018450.01.T01:intron | 40.0% | |
| GAAACAGGTTTCCGATTACT+CGG | - | Chr4:5007321-5007340 | None:intergenic | 40.0% | |
| GATTGTTGGCAGCAATTCTA+AGG | + | Chr4:5009168-5009187 | MsG0480018450.01.T01:intron | 40.0% | |
| GCATACCTTATTGCACTTGT+GGG | - | Chr4:5007816-5007835 | None:intergenic | 40.0% | |
| GGCAACGATGAATTGTTTGT+TGG | - | Chr4:5007589-5007608 | None:intergenic | 40.0% | |
| GTTTCATACTAGGCTCTCTA+AGG | + | Chr4:5007704-5007723 | MsG0480018450.01.T01:CDS | 40.0% | |
| TCACCTATGATGCAAGAAAC+AGG | - | Chr4:5007336-5007355 | None:intergenic | 40.0% | |
| TCATCATTAGGCTTGACCAT+AGG | - | Chr4:5008117-5008136 | None:intergenic | 40.0% | |
| TGCTTTACGAAATGGAGCAT+TGG | - | Chr4:5007652-5007671 | None:intergenic | 40.0% | |
| TTGACCATAGGCAAACTACT+AGG | - | Chr4:5008105-5008124 | None:intergenic | 40.0% | |
| ! | CGATAAGGATCCCATTGTTT+TGG | + | Chr4:5008541-5008560 | MsG0480018450.01.T01:CDS | 40.0% |
| ! | CTTGATAACACACCAAGCAA+GGG | + | Chr4:5007465-5007484 | MsG0480018450.01.T01:CDS | 40.0% |
| ! | GCTTTACGAAATGGAGCATT+GGG | - | Chr4:5007651-5007670 | None:intergenic | 40.0% |
| ! | TCTTGATAACACACCAAGCA+AGG | + | Chr4:5007464-5007483 | MsG0480018450.01.T01:CDS | 40.0% |
| ! | TTTTCAGCACATTTTCCTGC+CGG | + | Chr4:5007417-5007436 | MsG0480018450.01.T01:CDS | 40.0% |
| !! | CCTTAAACCGGTTGATAAAG+CGG | + | Chr4:5008916-5008935 | MsG0480018450.01.T01:CDS | 40.0% |
| !! | TCTTGAGGGCATTTATGTCT+AGG | + | Chr4:5008194-5008213 | MsG0480018450.01.T01:intron | 40.0% |
| !! | TTGCATGATTTTGAGAACGC+AGG | - | Chr4:5008507-5008526 | None:intergenic | 40.0% |
| AAACCTGCGCAAGATTGACT+TGG | - | Chr4:5008166-5008185 | None:intergenic | 45.0% | |
| AACACACCAAGCAAGGGTTT+AGG | + | Chr4:5007471-5007490 | MsG0480018450.01.T01:CDS | 45.0% | |
| ACCAGAGTACGCTGCTATAT+TGG | + | Chr4:5008295-5008314 | MsG0480018450.01.T01:intron | 45.0% | |
| ACCGGCAAAACTATGCTTCT+CGG | + | Chr4:5007363-5007382 | MsG0480018450.01.T01:CDS | 45.0% | |
| AGCATTGTTGCAGCAGTCTA+AGG | + | Chr4:5007668-5007687 | MsG0480018450.01.T01:CDS | 45.0% | |
| AGGGCAGCAAGTAGTCATTA+CGG | + | Chr4:5008943-5008962 | MsG0480018450.01.T01:CDS | 45.0% | |
| AGGTCGACATGATTCATGAC+TGG | + | Chr4:5007616-5007635 | MsG0480018450.01.T01:CDS | 45.0% | |
| AGGTTTGACACGAGTCTTGA+GGG | + | Chr4:5008180-5008199 | MsG0480018450.01.T01:intron | 45.0% | |
| ATCATAGGTGATGCTCACAC+CGG | + | Chr4:5007345-5007364 | MsG0480018450.01.T01:CDS | 45.0% | |
| ATGCTTCTCGGTTGTATTCG+AGG | + | Chr4:5007375-5007394 | MsG0480018450.01.T01:CDS | 45.0% | |
| CATACGTCTTTCAGCATCAC+CGG | - | Chr4:5007439-5007458 | None:intergenic | 45.0% | |
| CATAGACCTAAACCCTTGCT+TGG | - | Chr4:5007480-5007499 | None:intergenic | 45.0% | |
| CCTTTCTCCGCTTTATCAAC+CGG | - | Chr4:5008926-5008945 | None:intergenic | 45.0% | |
| CTGTTAAGCCACCGAGTAAT+CGG | + | Chr4:5007307-5007326 | MsG0480018450.01.T01:CDS | 45.0% | |
| GGCATACCTTATTGCACTTG+TGG | - | Chr4:5007817-5007836 | None:intergenic | 45.0% | |
| GTGCAAGTTTCGAAGCTTCA+GGG | - | Chr4:5008340-5008359 | None:intergenic | 45.0% | |
| TGATGCTGAAAGACGTATGC+TGG | + | Chr4:5007440-5007459 | MsG0480018450.01.T01:CDS | 45.0% | |
| TGCAAGTTTCGAAGCTTCAG+GGG | - | Chr4:5008339-5008358 | None:intergenic | 45.0% | |
| TGTGCAAGTTTCGAAGCTTC+AGG | - | Chr4:5008341-5008360 | None:intergenic | 45.0% | |
| TTGTGCCCACAAGTGCAATA+AGG | + | Chr4:5007808-5007827 | MsG0480018450.01.T01:CDS | 45.0% | |
| ! | CCGCTTTATCAACCGGTTTA+AGG | - | Chr4:5008919-5008938 | None:intergenic | 45.0% |
| ! | TCGACCTAGTAGTTTGCCTA+TGG | + | Chr4:5008098-5008117 | MsG0480018450.01.T01:CDS | 45.0% |
| !! | ACCGAGAAGCATAGTTTTGC+CGG | - | Chr4:5007367-5007386 | None:intergenic | 45.0% |
| !! | CGGTTGATAAAGCGGAGAAA+GGG | + | Chr4:5008924-5008943 | MsG0480018450.01.T01:CDS | 45.0% |
| ACAGGTTTCCGATTACTCGG+TGG | - | Chr4:5007318-5007337 | None:intergenic | 50.0% | |
| CAGGTTTGACACGAGTCTTG+AGG | + | Chr4:5008179-5008198 | MsG0480018450.01.T01:intron | 50.0% | |
| GCCAATATAGCAGCGTACTC+TGG | - | Chr4:5008299-5008318 | None:intergenic | 50.0% | |
| GGCGTCTAACTTTCGCTCAT+TGG | + | Chr4:5008215-5008234 | MsG0480018450.01.T01:intron | 50.0% | |
| TTTCAGCGGTGAAGGAATCC+CGG | + | Chr4:5007898-5007917 | MsG0480018450.01.T01:intron | 50.0% | |
| !! | CCGGTTGATAAAGCGGAGAA+AGG | + | Chr4:5008923-5008942 | MsG0480018450.01.T01:CDS | 50.0% |
| CCTCCAAGTCAATCTTGCGC+AGG | + | Chr4:5008160-5008179 | MsG0480018450.01.T01:CDS | 55.0% | |
| !! | CCTGCGCAAGATTGACTTGG+AGG | - | Chr4:5008163-5008182 | None:intergenic | 55.0% |
| CGTCTTTCAGCATCACCGGC+AGG | - | Chr4:5007435-5007454 | None:intergenic | 60.0% | |
| GCTTCAGGGGTGACTGCGAC+AGG | - | Chr4:5008326-5008345 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 5007303 | 5009258 | 5007303 | ID=MsG0480018450.01;Name=MsG0480018450.01 |
| Chr4 | mRNA | 5007303 | 5009258 | 5007303 | ID=MsG0480018450.01.T01;Parent=MsG0480018450.01;Name=MsG0480018450.01.T01;_AED=0.25;_eAED=0.26;_QI=0|0|0|1|1|0.83|6|0|412 |
| Chr4 | exon | 5007303 | 5007829 | 5007303 | ID=MsG0480018450.01.T01:exon:1335;Parent=MsG0480018450.01.T01 |
| Chr4 | exon | 5007904 | 5007997 | 5007904 | ID=MsG0480018450.01.T01:exon:1336;Parent=MsG0480018450.01.T01 |
| Chr4 | exon | 5008078 | 5008192 | 5008078 | ID=MsG0480018450.01.T01:exon:1337;Parent=MsG0480018450.01.T01 |
| Chr4 | exon | 5008300 | 5008592 | 5008300 | ID=MsG0480018450.01.T01:exon:1338;Parent=MsG0480018450.01.T01 |
| Chr4 | exon | 5008845 | 5008964 | 5008845 | ID=MsG0480018450.01.T01:exon:1339;Parent=MsG0480018450.01.T01 |
| Chr4 | exon | 5009169 | 5009258 | 5009169 | ID=MsG0480018450.01.T01:exon:1340;Parent=MsG0480018450.01.T01 |
| Chr4 | CDS | 5007303 | 5007829 | 5007303 | ID=MsG0480018450.01.T01:cds;Parent=MsG0480018450.01.T01 |
| Chr4 | CDS | 5007904 | 5007997 | 5007904 | ID=MsG0480018450.01.T01:cds;Parent=MsG0480018450.01.T01 |
| Chr4 | CDS | 5008078 | 5008192 | 5008078 | ID=MsG0480018450.01.T01:cds;Parent=MsG0480018450.01.T01 |
| Chr4 | CDS | 5008300 | 5008592 | 5008300 | ID=MsG0480018450.01.T01:cds;Parent=MsG0480018450.01.T01 |
| Chr4 | CDS | 5008845 | 5008964 | 5008845 | ID=MsG0480018450.01.T01:cds;Parent=MsG0480018450.01.T01 |
| Chr4 | CDS | 5009169 | 5009258 | 5009169 | ID=MsG0480018450.01.T01:cds;Parent=MsG0480018450.01.T01 |
| Gene Sequence |
| Protein sequence |
