AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021102.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021102.01.T01 MTR_4g066020 77.619 420 36 5 1 369 1 413 0.0 630
MsG0480021102.01.T01 MTR_1g071300 30.864 162 97 6 214 366 138 293 2.14e-13 71.6
MsG0480021102.01.T01 MTR_1g071300 30.864 162 97 6 214 366 138 293 2.80e-13 71.2
MsG0480021102.01.T01 MTR_1g071300 30.864 162 97 6 214 366 138 293 2.84e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021102.01.T01 AT3G20810 60.333 421 102 6 4 367 5 417 6.00e-171 483
MsG0480021102.01.T01 AT3G20810 59.102 401 100 5 4 348 5 397 1.13e-160 456
MsG0480021102.01.T01 AT3G20810 56.250 432 113 8 4 367 5 428 6.20e-153 438
MsG0480021102.01.T01 AT3G20810 60.991 323 73 2 4 273 5 327 6.98e-134 386
MsG0480021102.01.T01 AT3G20810 61.059 321 72 2 4 271 5 325 1.08e-132 384
MsG0480021102.01.T01 AT5G19840 26.449 276 152 9 127 360 15 281 1.96e-15 78.2
MsG0480021102.01.T01 AT5G19840 26.449 276 152 9 127 360 15 281 2.00e-15 78.2

Find 103 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGATATGGGGATTATTA+TGG 0.186608 4:-53487203 MsG0480021102.01.T01:CDS
TTTGAATACCTGATCAAATA+AGG 0.226160 4:+53483587 None:intergenic
AGCGCTTAGGGCTTTGGATA+TGG 0.232594 4:-53487215 MsG0480021102.01.T01:CDS
CAGCCAGGTAATGATCTTTC+AGG 0.278024 4:+53484918 None:intergenic
TTAAGAAGCGCTTAGGGCTT+TGG 0.314899 4:-53487221 MsG0480021102.01.T01:CDS
TCCTTGGCACTCGGTGTTGC+CGG 0.319116 4:-53487310 MsG0480021102.01.T01:CDS
CCAGTTTATCAGTTAGCTTT+TGG 0.327040 4:-53482016 MsG0480021102.01.T01:CDS
GGCGCGAATGTCGCCGGCGG+CGG 0.341012 4:+53487377 None:intergenic
GCGAAATGTTGCTATGAAAA+TGG 0.343431 4:-53487249 MsG0480021102.01.T01:CDS
TTGGATATGGGGATTATTAT+GGG 0.343770 4:-53487202 MsG0480021102.01.T01:intron
CCAAAAGCTAACTGATAAAC+TGG 0.357343 4:+53482016 None:intergenic
AATTCCAAGTCTTGCACCTT+AGG 0.363637 4:+53482116 None:intergenic
GATTACTTGCAAAGAGTTGC+TGG 0.375148 4:-53484830 MsG0480021102.01.T01:CDS
GTTTCACACTTCCAGGTTGT+TGG 0.378528 4:-53482823 MsG0480021102.01.T01:intron
AGATCTCTCAATGCTTGGTT+TGG 0.381952 4:-53483402 MsG0480021102.01.T01:CDS
ATGCAGTCGCTGATGATAAC+TGG 0.382618 4:+53484890 None:intergenic
TTTGAAGCAAGGGACTTAAC+AGG 0.394352 4:+53484980 None:intergenic
GCGCTTAGGGCTTTGGATAT+GGG 0.395382 4:-53487214 MsG0480021102.01.T01:CDS
AGCAGCTGCACTCCGGTCCT+TGG 0.396639 4:-53487326 MsG0480021102.01.T01:CDS
TTTCACACTTCCAGGTTGTT+GGG 0.399540 4:-53482822 MsG0480021102.01.T01:intron
TGCTGGTGACCGCACTGTTC+CGG 0.405682 4:-53484813 MsG0480021102.01.T01:CDS
TCAGCATCCCTTATTTGATC+AGG 0.417700 4:-53483595 MsG0480021102.01.T01:intron
AAAACTATTTATGTGCAGAT+TGG 0.423646 4:-53483701 MsG0480021102.01.T01:CDS
GGAGAGTTTAAGAAGCGCTT+AGG 0.425090 4:-53487228 MsG0480021102.01.T01:CDS
CAAAGCATGGTTTCTGAGTA+GGG 0.429895 4:+53482752 None:intergenic
AATGCTTGGTTTGGTCCAGC+TGG 0.430502 4:-53483393 MsG0480021102.01.T01:CDS
TTCTGCGGCGCGAATGTCGC+CGG 0.434979 4:+53487371 None:intergenic
ACAAGAGTAATTACCTCAAC+CGG 0.440109 4:+53484794 None:intergenic
TTGAATACCTGATCAAATAA+GGG 0.448968 4:+53483588 None:intergenic
TGAGATGGAGTGGAGGAGTG+TGG 0.454775 4:+53487440 None:intergenic
CTTTAGATCTTATCCGATCA+AGG 0.458405 4:+53483649 None:intergenic
CATAGTGCCACCACTTTGGC+GGG 0.459007 4:+53482054 None:intergenic
GCAAAGCATGGTTTCTGAGT+AGG 0.465229 4:+53482751 None:intergenic
TGATAACTGGAGAGCCAGCC+AGG 0.466614 4:+53484903 None:intergenic
CGCTTAGGGCTTTGGATATG+GGG 0.468020 4:-53487213 MsG0480021102.01.T01:CDS
GTTTCCTAAGGTGCAAGACT+TGG 0.471641 4:-53482120 MsG0480021102.01.T01:CDS
CTTGATCGGATAAGATCTAA+AGG 0.478631 4:-53483648 MsG0480021102.01.T01:CDS
AGCTAAGATCTCTCAATGCT+TGG 0.481715 4:-53483407 MsG0480021102.01.T01:CDS
GAATGTCGCCGGCGGCGGCA+AGG 0.484994 4:+53487382 None:intergenic
TGACCGCACTGTTCCGGTTG+AGG 0.485106 4:-53484807 MsG0480021102.01.T01:intron
GCACTCCGGTCCTTGGCACT+CGG 0.485361 4:-53487319 MsG0480021102.01.T01:CDS
ATGTCTTCCCTTGCCGCCGC+CGG 0.486682 4:-53487390 MsG0480021102.01.T01:CDS
AATGGCAGATAAATGAGCTT+CGG 0.499618 4:-53483473 MsG0480021102.01.T01:intron
CGCACATAGTGCCACCACTT+TGG 0.500138 4:+53482050 None:intergenic
GGGACTTAACAGGCAAAAGT+TGG 0.501194 4:+53484990 None:intergenic
TCAGCGACTGCATGGCGCAC+TGG 0.503078 4:-53484880 MsG0480021102.01.T01:CDS
CACTACAAGCTTTGAAGCAA+GGG 0.503171 4:+53484970 None:intergenic
CTGAAAGATCATTACCTGGC+TGG 0.510224 4:-53484917 MsG0480021102.01.T01:CDS
CGCAGAAGCAGTTCGTGAGA+TGG 0.510927 4:-53487355 MsG0480021102.01.T01:CDS
CCACCAGTAAAACAATAGTC+AGG 0.511588 4:+53483435 None:intergenic
GAGATGGAGTGGAGGAGTGT+GGG 0.514149 4:+53487441 None:intergenic
AATGTCGCCGGCGGCGGCAA+GGG 0.514689 4:+53487383 None:intergenic
AGTTCCTCAGACAAAGATGC+TGG 0.515281 4:+53482779 None:intergenic
CGTTCTCTGAGTTCCTTGAT+CGG 0.519472 4:-53483662 MsG0480021102.01.T01:CDS
GAGAGTTTAAGAAGCGCTTA+GGG 0.522423 4:-53487227 MsG0480021102.01.T01:CDS
AAGCAGTTCGTGAGATGGCG+TGG 0.524892 4:-53487350 MsG0480021102.01.T01:CDS
ACATAGTGCCACCACTTTGG+CGG 0.531433 4:+53482053 None:intergenic
AAAGTAATACGACATTAAGA+TGG 0.532681 4:+53481969 None:intergenic
CATGCTTTGCAATTCCAGCC+AGG 0.532765 4:-53482738 MsG0480021102.01.T01:intron
GAGAGAGTCGCTGATGGATG+AGG 0.536053 4:+53487491 None:intergenic
CAACACCGAGTGCCAAGGAC+CGG 0.542861 4:+53487314 None:intergenic
GTATGTTATGATGTGGATCA+TGG 0.546162 4:+53483352 None:intergenic
GGATGCTGAGCAAGATATGT+AGG 0.548812 4:+53483609 None:intergenic
GGAGATTCTGCGTCGAGCGT+TGG 0.551554 4:+53487462 None:intergenic
GAGATCCGCCTTGTCACTTG+AGG 0.559206 4:-53484945 MsG0480021102.01.T01:CDS
AGATGAATTGAAGTTTCCTA+AGG 0.560556 4:-53482132 MsG0480021102.01.T01:CDS
TGCGGCGCGAATGTCGCCGG+CGG 0.563097 4:+53487374 None:intergenic
TTATCCAGCATCTTTGTCTG+AGG 0.563839 4:-53482783 MsG0480021102.01.T01:CDS
TGATGTGGATCATGGTGTAA+TGG 0.564342 4:+53483360 None:intergenic
GTGGCGTGACGCGTACTCGA+TGG 0.564597 4:-53487286 MsG0480021102.01.T01:CDS
CAGAAAACTAAATACCTGGC+TGG 0.564939 4:+53482724 None:intergenic
CGGCGGCAAGGGAAGACATA+CGG 0.568490 4:+53487394 None:intergenic
CATCTCACGAACTGCTTCTG+CGG 0.572178 4:+53487356 None:intergenic
GCAAGATATGTAGGACCACC+AGG 0.576296 4:+53483618 None:intergenic
CTCCACTCCATCTCATCCCA+CGG 0.580867 4:-53487432 MsG0480021102.01.T01:CDS
CTGGCTGGAATTGCAAAGCA+TGG 0.582870 4:+53482739 None:intergenic
ACCGGCAACACCGAGTGCCA+AGG 0.583074 4:+53487309 None:intergenic
GTAGCCTCCGTGGGATGAGA+TGG 0.584469 4:+53487425 None:intergenic
AGTTATCATCAGCGACTGCA+TGG 0.585260 4:-53484888 MsG0480021102.01.T01:CDS
TCACTACAAGCTTTGAAGCA+AGG 0.585461 4:+53484969 None:intergenic
CAAAGTGGTGGCACTATGTG+CGG 0.587103 4:-53482049 MsG0480021102.01.T01:CDS
ACATCATAACATACTAGCAC+AGG 0.592715 4:-53483343 MsG0480021102.01.T01:intron
GGCACTCGGTGTTGCCGGTG+TGG 0.599102 4:-53487305 MsG0480021102.01.T01:CDS
AATGGCGTTACAGTTCCAGC+TGG 0.601305 4:+53483378 None:intergenic
CAGGAACTCCTCAAGTGACA+AGG 0.603886 4:+53484937 None:intergenic
TGTTTCGAGAGAGTCGCTGA+TGG 0.607399 4:+53487485 None:intergenic
GACGTAGGCGTAGCCTCCGT+GGG 0.608040 4:+53487416 None:intergenic
GCGTGGGAGCAGCTGCACTC+CGG 0.612868 4:-53487333 MsG0480021102.01.T01:CDS
TATATATCCCGCCAAAGTGG+TGG 0.622734 4:-53482061 MsG0480021102.01.T01:CDS
AGAGTCGCTGATGGATGAGG+TGG 0.626527 4:+53487494 None:intergenic
AGCAGTTCGTGAGATGGCGT+GGG 0.629178 4:-53487349 MsG0480021102.01.T01:CDS
GGACGTAGGCGTAGCCTCCG+TGG 0.630457 4:+53487415 None:intergenic
GTTCCTGAAAGATCATTACC+TGG 0.636467 4:-53484921 MsG0480021102.01.T01:CDS
CGTGGGATGAGATGGAGTGG+AGG 0.638713 4:+53487433 None:intergenic
CTCCGTGGGATGAGATGGAG+TGG 0.638980 4:+53487430 None:intergenic
AAAGCATGGTTTCTGAGTAG+GGG 0.643076 4:+53482753 None:intergenic
TGTTATATATCCCGCCAAAG+TGG 0.659158 4:-53482064 MsG0480021102.01.T01:CDS
TGTGCTAGTATGTTATGATG+TGG 0.675622 4:+53483345 None:intergenic
AAGGGAAGACATACGGACGT+AGG 0.697107 4:+53487401 None:intergenic
GAACTCCTCAAGTGACAAGG+CGG 0.709948 4:+53484940 None:intergenic
CACTCCATCTCATCCCACGG+AGG 0.717936 4:-53487429 MsG0480021102.01.T01:CDS
GAGTACGCGTCACGCCACAC+CGG 0.723133 4:+53487291 None:intergenic
TTACCTCAACCGGAACAGTG+CGG 0.784273 4:+53484804 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGTTTAATTCATTTCAA+TGG - Chr4:53483422-53483441 MsG0480021102.01.T01:CDS 15.0%
!! AAATTTAGCTATTTAAAAAG+AGG + Chr4:53485226-53485245 None:intergenic 15.0%
!! AATTTAGCTATTTAAAAAGA+GGG + Chr4:53485225-53485244 None:intergenic 15.0%
!! TATAACACAATTGTAATATA+GGG + Chr4:53486428-53486447 None:intergenic 15.0%
!! TTAATTATTAATACTACGAT+TGG - Chr4:53483614-53483633 MsG0480021102.01.T01:CDS 15.0%
!!! AATAGCTAAATTTATTTCTA+CGG - Chr4:53485233-53485252 MsG0480021102.01.T01:intron 15.0%
!!! AATTTTTTTTTTTTCTGTGA+TGG - Chr4:53485690-53485709 MsG0480021102.01.T01:intron 15.0%
!!! AGTGAATAAATAAATTTGTT+TGG - Chr4:53485427-53485446 MsG0480021102.01.T01:intron 15.0%
!!! GAAATTTAAGTTCTTTTTTT+TGG - Chr4:53484974-53484993 MsG0480021102.01.T01:CDS 15.0%
!!! TAATTTGAATGAATTGATTT+TGG - Chr4:53483710-53483729 MsG0480021102.01.T01:CDS 15.0%
!!! TCATTTTATTGCTTTTAATT+AGG - Chr4:53487230-53487249 MsG0480021102.01.T01:CDS 15.0%
!!! TCATTTTGAAACAAATTTTT+TGG + Chr4:53483102-53483121 None:intergenic 15.0%
!!! TTAGTTTTAAAGTAATACTT+TGG + Chr4:53483197-53483216 None:intergenic 15.0%
!! AAAAAAATTACATGCATGTT+TGG + Chr4:53483999-53484018 None:intergenic 20.0%
!! AAAACTAACAATAGTTACTA+AGG - Chr4:53483209-53483228 MsG0480021102.01.T01:intron 20.0%
!! AAAGAAAAGTTATTATTGCA+TGG + Chr4:53483138-53483157 None:intergenic 20.0%
!! AATAGTATACTAGAAGAAAA+GGG - Chr4:53485733-53485752 MsG0480021102.01.T01:intron 20.0%
!! AATTAAGGAAATACTTCTAT+AGG + Chr4:53486945-53486964 None:intergenic 20.0%
!! AGTAGTTATTAGTGAAATAA+AGG - Chr4:53486340-53486359 MsG0480021102.01.T01:intron 20.0%
!! AGTTTACCTATACAATATAT+GGG - Chr4:53487115-53487134 MsG0480021102.01.T01:intron 20.0%
!! ATAACATTTAAACAATGGAA+TGG - Chr4:53484271-53484290 MsG0480021102.01.T01:intron 20.0%
!! ATATAACATGATTTAACTCT+GGG + Chr4:53486278-53486297 None:intergenic 20.0%
!! ATGTGTAAAATAACTTTACA+CGG - Chr4:53482571-53482590 MsG0480021102.01.T01:intron 20.0%
!! ATTTAGCTATTTAAAAAGAG+GGG + Chr4:53485224-53485243 None:intergenic 20.0%
!! CTATAACACAATTGTAATAT+AGG + Chr4:53486429-53486448 None:intergenic 20.0%
!! GAAAAAAAAAAAATTACACG+AGG + Chr4:53485685-53485704 None:intergenic 20.0%
!! GAGTATTAATTAAAAAAAGG+AGG + Chr4:53483052-53483071 None:intergenic 20.0%
!! GATATAAGATAGAAATGTTT+AGG + Chr4:53487070-53487089 None:intergenic 20.0%
!! GATGAATTTATGATTAATTC+TGG + Chr4:53485263-53485282 None:intergenic 20.0%
!! GTAATATTCATTAATTGACA+TGG - Chr4:53482536-53482555 MsG0480021102.01.T01:intron 20.0%
!! TAATAGTATACTAGAAGAAA+AGG - Chr4:53485732-53485751 MsG0480021102.01.T01:intron 20.0%
!! TACAAATTACAGTATAAAGA+CGG + Chr4:53485626-53485645 None:intergenic 20.0%
!! TATATAACATGATTTAACTC+TGG + Chr4:53486279-53486298 None:intergenic 20.0%
!! TCCATTGTTTAAATGTTATA+AGG + Chr4:53484270-53484289 None:intergenic 20.0%
!! TCCTTATAACATTTAAACAA+TGG - Chr4:53484266-53484285 MsG0480021102.01.T01:intron 20.0%
!! TCTTAAAGACTTTAATCTAA+GGG - Chr4:53482981-53483000 MsG0480021102.01.T01:intron 20.0%
!!! AGAGATAAAGTTTTCAAAAT+CGG - Chr4:53484773-53484792 MsG0480021102.01.T01:intron 20.0%
!!! AGGGAGTATTAATTAAAAAA+AGG + Chr4:53483055-53483074 None:intergenic 20.0%
!!! AGTTTTGTAATTGTTAGTTA+AGG + Chr4:53484892-53484911 None:intergenic 20.0%
!!! ATAGCTAAATTTATTTCTAC+GGG - Chr4:53485234-53485253 MsG0480021102.01.T01:intron 20.0%
!!! ATCAAATACTCTATTTCTAT+TGG + Chr4:53482768-53482787 None:intergenic 20.0%
!!! TATATTATTCCAGTTTTTCT+TGG + Chr4:53484637-53484656 None:intergenic 20.0%
!!! TTCAAATTACATTTTTGCTA+TGG + Chr4:53483699-53483718 None:intergenic 20.0%
! AAAACTATTTATGTGCAGAT+TGG - Chr4:53485786-53485805 MsG0480021102.01.T01:intron 25.0%
! AAATAAGAACCATAATAGCA+AGG + Chr4:53486304-53486323 None:intergenic 25.0%
! AATAAGAACCATAATAGCAA+GGG + Chr4:53486303-53486322 None:intergenic 25.0%
! ACAAATTACAGTATAAAGAC+GGG + Chr4:53485625-53485644 None:intergenic 25.0%
! ACAACTTTGTTACTAGTATT+TGG - Chr4:53485010-53485029 MsG0480021102.01.T01:intron 25.0%
! ATGAACACATATGAAATGAA+TGG + Chr4:53487214-53487233 None:intergenic 25.0%
! ATTATTGTTACGAGATTGTT+AGG - Chr4:53483482-53483501 MsG0480021102.01.T01:intron 25.0%
! CAAACATGATTGAATTCAAA+GGG + Chr4:53482471-53482490 None:intergenic 25.0%
! CAAATTAATCCACGATTTAT+AGG + Chr4:53483023-53483042 None:intergenic 25.0%
! CAACTTTGTTACTAGTATTT+GGG - Chr4:53485011-53485030 MsG0480021102.01.T01:intron 25.0%
! CAATAGTTACTAAGGATAAT+TGG - Chr4:53483217-53483236 MsG0480021102.01.T01:intron 25.0%
! CAATCAGAGAGATATTTAAA+GGG + Chr4:53485345-53485364 None:intergenic 25.0%
! CAGTTTACCTATACAATATA+TGG - Chr4:53487114-53487133 MsG0480021102.01.T01:intron 25.0%
! CATAAAATTCAAGCTATGAA+TGG + Chr4:53483344-53483363 None:intergenic 25.0%
! CATAAATACAAACAACATTG+AGG + Chr4:53485654-53485673 None:intergenic 25.0%
! CATAATAAAACTCCATTGTT+TGG - Chr4:53484114-53484133 MsG0480021102.01.T01:intron 25.0%
! CATATATTGTATAGGTAAAC+TGG + Chr4:53487116-53487135 None:intergenic 25.0%
! CCAATTAAATAATTTCCTAG+TGG + Chr4:53485285-53485304 None:intergenic 25.0%
! CCACTAGGAAATTATTTAAT+TGG - Chr4:53485282-53485301 MsG0480021102.01.T01:intron 25.0%
! CCATAGAATGATATATTTGA+CGG - Chr4:53486628-53486647 MsG0480021102.01.T01:intron 25.0%
! CTATAAAGTAAACGTTAGAA+GGG + Chr4:53484458-53484477 None:intergenic 25.0%
! CTCTTAAAGACTTTAATCTA+AGG - Chr4:53482980-53482999 MsG0480021102.01.T01:intron 25.0%
! CTTATACACTTTGATTACAT+TGG - Chr4:53485154-53485173 MsG0480021102.01.T01:intron 25.0%
! GTTTACCTATACAATATATG+GGG - Chr4:53487116-53487135 MsG0480021102.01.T01:intron 25.0%
! TAACAGCTAATGAACATTTA+CGG + Chr4:53484936-53484955 None:intergenic 25.0%
! TAATCATAAATTCATCCACT+AGG - Chr4:53485267-53485286 MsG0480021102.01.T01:intron 25.0%
! TCTTGAATTTGATGTTTCAA+AGG - Chr4:53482429-53482448 MsG0480021102.01.T01:intron 25.0%
! TTAAACAATGGAATGGTAAT+TGG - Chr4:53484278-53484297 MsG0480021102.01.T01:intron 25.0%
! TTAATCTAAGGGACTTATTT+GGG - Chr4:53482992-53483011 MsG0480021102.01.T01:intron 25.0%
! TTGAATACCTGATCAAATAA+GGG + Chr4:53485902-53485921 None:intergenic 25.0%
! TTTAATCTAAGGGACTTATT+TGG - Chr4:53482991-53483010 MsG0480021102.01.T01:intron 25.0%
! TTTGAATACCTGATCAAATA+AGG + Chr4:53485903-53485922 None:intergenic 25.0%
!! ATAAATCGTGGATTAATTTG+TGG - Chr4:53483023-53483042 MsG0480021102.01.T01:intron 25.0%
!! CTACATTTTCAACAAAATCA+AGG + Chr4:53483940-53483959 None:intergenic 25.0%
!! TGATTTGTAACTAAAATGCA+TGG - Chr4:53484716-53484735 MsG0480021102.01.T01:intron 25.0%
!! TGTAAAATATTTTACACCGT+CGG - Chr4:53482856-53482875 MsG0480021102.01.T01:intron 25.0%
!! TTTTACCATTTTACAACAGA+CGG + Chr4:53487167-53487186 None:intergenic 25.0%
!!! AATGATTGGTTTTCATTAGA+TGG - Chr4:53482830-53482849 MsG0480021102.01.T01:intron 25.0%
!!! TTTCTACATAGAGCATTTTT+AGG + Chr4:53485374-53485393 None:intergenic 25.0%
AAATATCTCTCTGATTGCAT+AGG - Chr4:53485348-53485367 MsG0480021102.01.T01:intron 30.0%
AAATCTGAACTTTGTATTGC+TGG + Chr4:53486506-53486525 None:intergenic 30.0%
AATGGTAAAATTTATGCGCA+CGG - Chr4:53487177-53487196 MsG0480021102.01.T01:intron 30.0%
AATTTGATGTTTCAAAGGTG+AGG - Chr4:53482434-53482453 MsG0480021102.01.T01:intron 30.0%
AGAGAAGATACGTTGAATTA+AGG + Chr4:53486960-53486979 None:intergenic 30.0%
AGATGAATTGAAGTTTCCTA+AGG - Chr4:53487355-53487374 MsG0480021102.01.T01:CDS 30.0%
AGTTCAGAAAACTAAATACC+TGG + Chr4:53486770-53486789 None:intergenic 30.0%
ATAAAACTCCATTGTTTGGT+AGG - Chr4:53484118-53484137 MsG0480021102.01.T01:intron 30.0%
ATAAGAACCATAATAGCAAG+GGG + Chr4:53486302-53486321 None:intergenic 30.0%
ATACCACATCACAACAATAA+TGG + Chr4:53483455-53483474 None:intergenic 30.0%
ATATATCCAAAAACAGCCTT+AGG - Chr4:53484352-53484371 MsG0480021102.01.T01:intron 30.0%
ATTTCTCCATTCCATTCAAA+TGG + Chr4:53484229-53484248 None:intergenic 30.0%
CAATGATTAGAGAAAGAGAA+TGG + Chr4:53483250-53483269 None:intergenic 30.0%
CAGACATGGTAAAATGATTA+TGG - Chr4:53484410-53484429 MsG0480021102.01.T01:intron 30.0%
CATGTCATAATTACAACAGT+TGG + Chr4:53485950-53485969 None:intergenic 30.0%
CCGTCAAATATATCATTCTA+TGG + Chr4:53486631-53486650 None:intergenic 30.0%
CTAAATGTACACTTTATAGC+TGG - Chr4:53486451-53486470 MsG0480021102.01.T01:intron 30.0%
CTCAATGAAAAAGCAAACAT+TGG + Chr4:53483518-53483537 None:intergenic 30.0%
CTGTAACTTAACTCAATTGT+AGG - Chr4:53484910-53484929 MsG0480021102.01.T01:CDS 30.0%
CTTACTTTCACATTTATGCA+TGG + Chr4:53483772-53483791 None:intergenic 30.0%
GCAAACATGATTGAATTCAA+AGG + Chr4:53482472-53482491 None:intergenic 30.0%
GCAATCAGAGAGATATTTAA+AGG + Chr4:53485346-53485365 None:intergenic 30.0%
GCTATAAAGTAAACGTTAGA+AGG + Chr4:53484459-53484478 None:intergenic 30.0%
TAAACGACACTCATTTGAAA+CGG - Chr4:53483295-53483314 MsG0480021102.01.T01:intron 30.0%
TAATTATGACATGCAAGTTC+AGG - Chr4:53485957-53485976 MsG0480021102.01.T01:intron 30.0%
TAGGATTGATTGAAATAGGA+GGG - Chr4:53484137-53484156 MsG0480021102.01.T01:intron 30.0%
TAGTATTTGGGAAAATTCAC+CGG - Chr4:53485023-53485042 MsG0480021102.01.T01:intron 30.0%
TATATCCAAAAACAGCCTTA+GGG - Chr4:53484353-53484372 MsG0480021102.01.T01:intron 30.0%
TATGCCTGTAAAGAAAAGTA+GGG - Chr4:53485071-53485090 MsG0480021102.01.T01:intron 30.0%
TCAAAATCATTTGTGCATGT+TGG - Chr4:53483901-53483920 MsG0480021102.01.T01:intron 30.0%
TCACAGATTCTCTTAAGATA+AGG + Chr4:53486536-53486555 None:intergenic 30.0%
TCATCCTCAAATATGATACA+GGG - Chr4:53484072-53484091 MsG0480021102.01.T01:intron 30.0%
TTCTATAGGCTATAGTTCTT+CGG + Chr4:53486931-53486950 None:intergenic 30.0%
TTGGATATGGGGATTATTAT+GGG - Chr4:53482285-53482304 MsG0480021102.01.T01:intron 30.0%
TTGGTAGGATTGATTGAAAT+AGG - Chr4:53484133-53484152 MsG0480021102.01.T01:intron 30.0%
TTGTTCTTCAAAGTTCAAAG+AGG + Chr4:53484747-53484766 None:intergenic 30.0%
TTTCATTGAGTGAAATTACG+TGG - Chr4:53483528-53483547 MsG0480021102.01.T01:intron 30.0%
TTTCTTCTCTTCCATTTGAA+TGG - Chr4:53484215-53484234 MsG0480021102.01.T01:intron 30.0%
TTTGGATATGGGGATTATTA+TGG - Chr4:53482284-53482303 MsG0480021102.01.T01:intron 30.0%
! ATTTGTAGACTGCATTTTAG+AGG - Chr4:53487391-53487410 MsG0480021102.01.T01:CDS 30.0%
! CTTTATAGCTTTTACACTGT+AGG - Chr4:53484470-53484489 MsG0480021102.01.T01:intron 30.0%
! GTTTAGTTTCTTGATTCACA+GGG - Chr4:53484803-53484822 MsG0480021102.01.T01:intron 30.0%
! TATGTTATGGACTAAGTTGA+TGG - Chr4:53482910-53482929 MsG0480021102.01.T01:intron 30.0%
! TGTTTAGTTTCTTGATTCAC+AGG - Chr4:53484802-53484821 MsG0480021102.01.T01:intron 30.0%
! TTTCAAACTCACTCTTTTGT+TGG + Chr4:53483590-53483609 None:intergenic 30.0%
!! ACTCTATTTCTATTGGACAT+CGG + Chr4:53482761-53482780 None:intergenic 30.0%
!! ACTGTAAGGTTTTGTGAAAT+AGG - Chr4:53482643-53482662 MsG0480021102.01.T01:intron 30.0%
!! ATTCCTGACTATTGTTTTAC+TGG - Chr4:53486049-53486068 MsG0480021102.01.T01:intron 30.0%
!! TAAGCGACATCATTTTGAAA+CGG + Chr4:53483078-53483097 None:intergenic 30.0%
!! TTATATACCCCTTGCTATTA+TGG - Chr4:53486292-53486311 MsG0480021102.01.T01:intron 30.0%
!!! GGCTGTTTTTGGATATATAA+CGG + Chr4:53484350-53484369 None:intergenic 30.0%
!!! GTTAAGTCCTATGTTGATTT+TGG - Chr4:53483668-53483687 MsG0480021102.01.T01:CDS 30.0%
!!! TATGTTTTAACCACACAGTT+TGG + Chr4:53484042-53484061 None:intergenic 30.0%
AAAAATGCTGCGTACATTAC+CGG - Chr4:53486601-53486620 MsG0480021102.01.T01:intron 35.0%
AAAGGATCTGAGTATCAATG+GGG + Chr4:53484855-53484874 None:intergenic 35.0%
AAATCGGTGGTTTACTGTTA+AGG + Chr4:53482616-53482635 None:intergenic 35.0%
AAATGGAAGAGAAGAAAAGC+AGG + Chr4:53484212-53484231 None:intergenic 35.0%
AACTCGAGTAGAGTATGTTA+TGG - Chr4:53482897-53482916 MsG0480021102.01.T01:intron 35.0%
AAGGTGAGAGTTTAATCCAA+AGG + Chr4:53484873-53484892 None:intergenic 35.0%
AATGACAGGGTAAAAGTTCT+AGG + Chr4:53485398-53485417 None:intergenic 35.0%
AATGGAAGAGAAGAAAAGCA+GGG + Chr4:53484211-53484230 None:intergenic 35.0%
AATGGCAGATAAATGAGCTT+CGG - Chr4:53486014-53486033 MsG0480021102.01.T01:intron 35.0%
AATTACAGTATAAAGACGGG+AGG + Chr4:53485622-53485641 None:intergenic 35.0%
ACAAGAGTAATTACCTCAAC+CGG + Chr4:53484696-53484715 None:intergenic 35.0%
ACATCATAACATACTAGCAC+AGG - Chr4:53486144-53486163 MsG0480021102.01.T01:intron 35.0%
AGTATTTGGGAAAATTCACC+GGG - Chr4:53485024-53485043 MsG0480021102.01.T01:intron 35.0%
AGTGATATTCTTCCAAGCAA+AGG + Chr4:53486886-53486905 None:intergenic 35.0%
ATATGGGGATTATTATGGGT+GGG - Chr4:53482289-53482308 MsG0480021102.01.T01:intron 35.0%
ATGAAAATGATATGCACCGA+CGG + Chr4:53482875-53482894 None:intergenic 35.0%
ATTACAGTATAAAGACGGGA+GGG + Chr4:53485621-53485640 None:intergenic 35.0%
ATTTGTGCATGTTGGAATCA+CGG - Chr4:53483909-53483928 MsG0480021102.01.T01:intron 35.0%
ATTTGTTTGGTTGCAACAGT+TGG - Chr4:53485440-53485459 MsG0480021102.01.T01:intron 35.0%
CAAAGGATCTGAGTATCAAT+GGG + Chr4:53484856-53484875 None:intergenic 35.0%
CAATCAATCCTACCAAACAA+TGG + Chr4:53484129-53484148 None:intergenic 35.0%
CCAAAAGCTAACTGATAAAC+TGG + Chr4:53487474-53487493 None:intergenic 35.0%
CCATACCCCATATATTGTAT+AGG + Chr4:53487124-53487143 None:intergenic 35.0%
CCTATACAATATATGGGGTA+TGG - Chr4:53487121-53487140 MsG0480021102.01.T01:intron 35.0%
CTGTACAAAACATGCATACA+TGG - Chr4:53482804-53482823 MsG0480021102.01.T01:CDS 35.0%
CTTGATCGGATAAGATCTAA+AGG - Chr4:53485839-53485858 MsG0480021102.01.T01:intron 35.0%
CTTTAGATCTTATCCGATCA+AGG + Chr4:53485841-53485860 None:intergenic 35.0%
GCAGTTTGAGCAAAAAGTAA+CGG - Chr4:53485046-53485065 MsG0480021102.01.T01:intron 35.0%
GCGAAATGTTGCTATGAAAA+TGG - Chr4:53482238-53482257 MsG0480021102.01.T01:intron 35.0%
GGCATAACCAAAATCAACAT+AGG + Chr4:53483678-53483697 None:intergenic 35.0%
GTAGGATTGATTGAAATAGG+AGG - Chr4:53484136-53484155 MsG0480021102.01.T01:intron 35.0%
GTATGCCTGTAAAGAAAAGT+AGG - Chr4:53485070-53485089 MsG0480021102.01.T01:intron 35.0%
GTATGTTATGATGTGGATCA+TGG + Chr4:53486138-53486157 None:intergenic 35.0%
GTCATCCTCAAATATGATAC+AGG - Chr4:53484071-53484090 MsG0480021102.01.T01:intron 35.0%
GTTCTTCGGTCATTCAAAAT+AGG + Chr4:53486860-53486879 None:intergenic 35.0%
TACATGCATGTTTGGATTTG+CGG + Chr4:53483991-53484010 None:intergenic 35.0%
TAGCCATTATTGTTGTGATG+TGG - Chr4:53483449-53483468 MsG0480021102.01.T01:CDS 35.0%
TATATCATTCTATGGTGCAC+CGG + Chr4:53486623-53486642 None:intergenic 35.0%
TCAACCCTGTATCATATTTG+AGG + Chr4:53484079-53484098 None:intergenic 35.0%
TCAGGATTTGTCACAGAATA+GGG + Chr4:53485486-53485505 None:intergenic 35.0%
TCTCTTCCATTTGAATGGAA+TGG - Chr4:53484220-53484239 MsG0480021102.01.T01:intron 35.0%
TGATTGAATTCAAAGGGAAG+AGG + Chr4:53482465-53482484 None:intergenic 35.0%
TGCATACATGGCAAAATGAT+TGG - Chr4:53482816-53482835 MsG0480021102.01.T01:intron 35.0%
TGGATCTCACAACTTTATGT+GGG - Chr4:53483548-53483567 MsG0480021102.01.T01:intron 35.0%
TGTGCTAGTATGTTATGATG+TGG + Chr4:53486145-53486164 None:intergenic 35.0%
TGTTGAACTGAAACTGGAAA+TGG - Chr4:53485530-53485549 MsG0480021102.01.T01:intron 35.0%
TTCGGTAACAGTAATTGATG+TGG + Chr4:53482494-53482513 None:intergenic 35.0%
TTCTTCAAAGTTCAAAGAGG+AGG + Chr4:53484744-53484763 None:intergenic 35.0%
! AGTCGTTGCAGAGTATTAAT+TGG + Chr4:53483173-53483192 None:intergenic 35.0%
! CGGTTTCTGACATTTTTGAA+TGG - Chr4:53485996-53486015 MsG0480021102.01.T01:intron 35.0%
! GAGTTTGCTTAGAAAGGATT+TGG - Chr4:53482311-53482330 MsG0480021102.01.T01:intron 35.0%
! TTATTCCAGTTTTTCTTGGC+TGG + Chr4:53484633-53484652 None:intergenic 35.0%
!! AATGGGAGGTGTAAAGATTT+TGG - Chr4:53482383-53482402 MsG0480021102.01.T01:intron 35.0%
!! ACTATTGTTTTACTGGTGGA+GGG - Chr4:53486056-53486075 MsG0480021102.01.T01:intron 35.0%
!! AGGTTGGTTAAGGTTGATAA+TGG - Chr4:53482365-53482384 MsG0480021102.01.T01:intron 35.0%
!! GGTCAGTTTCTTTTGTTTGA+AGG - Chr4:53487316-53487335 MsG0480021102.01.T01:CDS 35.0%
!! GGTTGGTTAAGGTTGATAAT+GGG - Chr4:53482366-53482385 MsG0480021102.01.T01:intron 35.0%
!! GTTTCAAATGAGTGTCGTTT+AGG + Chr4:53483296-53483315 None:intergenic 35.0%
!!! CCAGTTTATCAGTTAGCTTT+TGG - Chr4:53487471-53487490 MsG0480021102.01.T01:CDS 35.0%
!!! GTTTATCAGTTAGCTTTTGG+TGG - Chr4:53487474-53487493 MsG0480021102.01.T01:CDS 35.0%
AAAGCATGGTTTCTGAGTAG+GGG + Chr4:53486737-53486756 None:intergenic 40.0%
AACATGATTTAACTCTGGGC+AGG + Chr4:53486274-53486293 None:intergenic 40.0%
AATTCCAAGTCTTGCACCTT+AGG + Chr4:53487374-53487393 None:intergenic 40.0%
ACATGATTTAACTCTGGGCA+GGG + Chr4:53486273-53486292 None:intergenic 40.0%
AGAAGAAAAGGGTAAGTGTG+CGG - Chr4:53485744-53485763 MsG0480021102.01.T01:intron 40.0%
AGACTCCGTCTGTTGTAAAA+TGG - Chr4:53487159-53487178 MsG0480021102.01.T01:intron 40.0%
AGAGAAGAAAAGCAGGGTAT+TGG + Chr4:53484205-53484224 None:intergenic 40.0%
AGATCTCTCAATGCTTGGTT+TGG - Chr4:53486085-53486104 MsG0480021102.01.T01:intron 40.0%
AGCGATATTCTTCCAAGCAA+AGG + Chr4:53486829-53486848 None:intergenic 40.0%
AGCTAAGATCTCTCAATGCT+TGG - Chr4:53486080-53486099 MsG0480021102.01.T01:intron 40.0%
AGGATTTGTCACAGAATAGG+GGG + Chr4:53485484-53485503 None:intergenic 40.0%
AGTGTGAAACTGAACGAAAG+GGG + Chr4:53484327-53484346 None:intergenic 40.0%
ATGTCAAAGTCCAAACTGTG+TGG - Chr4:53484029-53484048 MsG0480021102.01.T01:intron 40.0%
ATTCTGCTGTTGTGAAGGTT+CGG - Chr4:53482334-53482353 MsG0480021102.01.T01:intron 40.0%
CAAAGCATGGTTTCTGAGTA+GGG + Chr4:53486738-53486757 None:intergenic 40.0%
CACTTGACAGATGAATGACA+GGG + Chr4:53485411-53485430 None:intergenic 40.0%
CAGAAAACTAAATACCTGGC+TGG + Chr4:53486766-53486785 None:intergenic 40.0%
CAGGATTTGTCACAGAATAG+GGG + Chr4:53485485-53485504 None:intergenic 40.0%
CCAAAGGATCTGAGTATCAA+TGG + Chr4:53484857-53484876 None:intergenic 40.0%
CCAAGTTGTTGAACTGAAAC+TGG - Chr4:53485524-53485543 MsG0480021102.01.T01:intron 40.0%
CCACCAGTAAAACAATAGTC+AGG + Chr4:53486055-53486074 None:intergenic 40.0%
CCAGTTTCAGTTCAACAACT+TGG + Chr4:53485527-53485546 None:intergenic 40.0%
CCATTGATACTCAGATCCTT+TGG - Chr4:53484854-53484873 MsG0480021102.01.T01:CDS 40.0%
CCTGTAAAGAAAAGTAGGGA+GGG - Chr4:53485075-53485094 MsG0480021102.01.T01:intron 40.0%
CCTTACAGTCAGCTACAAAT+CGG + Chr4:53482632-53482651 None:intergenic 40.0%
CGAAAGGGGATTTATTAGAG+TGG + Chr4:53484313-53484332 None:intergenic 40.0%
CGGTGAGTTTGAGAAAATCA+CGG + Chr4:53483971-53483990 None:intergenic 40.0%
GAAATAGGAGGGAAATGAGT+GGG - Chr4:53484148-53484167 MsG0480021102.01.T01:intron 40.0%
GACAACTGTGCTTTCGTATT+CGG + Chr4:53482512-53482531 None:intergenic 40.0%
GAGTGTGAAACTGAACGAAA+GGG + Chr4:53484328-53484347 None:intergenic 40.0%
GATATGGGGATTATTATGGG+TGG - Chr4:53482288-53482307 MsG0480021102.01.T01:intron 40.0%
GATTACTTGCAAAGAGTTGC+TGG - Chr4:53484657-53484676 MsG0480021102.01.T01:intron 40.0%
GGATCTCACAACTTTATGTG+GGG - Chr4:53483549-53483568 MsG0480021102.01.T01:intron 40.0%
GTAACAGTATTTGCCGAAGT+TGG + Chr4:53486384-53486403 None:intergenic 40.0%
GTCAGGATTTGTCACAGAAT+AGG + Chr4:53485487-53485506 None:intergenic 40.0%
GTGGATCTCACAACTTTATG+TGG - Chr4:53483547-53483566 MsG0480021102.01.T01:intron 40.0%
GTTCCTGAAAGATCATTACC+TGG - Chr4:53484566-53484585 MsG0480021102.01.T01:intron 40.0%
GTTGTTGGGAAAAATACGTC+AGG - Chr4:53486679-53486698 MsG0480021102.01.T01:intron 40.0%
GTTTCAGTTCAACAACTTGG+TGG + Chr4:53485524-53485543 None:intergenic 40.0%
TCACTTGACAGATGAATGAC+AGG + Chr4:53485412-53485431 None:intergenic 40.0%
TGAAATAGGAGGGAAATGAG+TGG - Chr4:53484147-53484166 MsG0480021102.01.T01:intron 40.0%
TGATGTGGATCATGGTGTAA+TGG + Chr4:53486130-53486149 None:intergenic 40.0%
TGGCTAAAACAGAATCTGTC+AGG + Chr4:53485504-53485523 None:intergenic 40.0%
TGTTATATATCCCGCCAAAG+TGG - Chr4:53487423-53487442 MsG0480021102.01.T01:CDS 40.0%
TTACACACCTATACATGCAG+AGG + Chr4:53487034-53487053 None:intergenic 40.0%
TTACAGTATAAAGACGGGAG+GGG + Chr4:53485620-53485639 None:intergenic 40.0%
TTATCCAGCATCTTTGTCTG+AGG - Chr4:53486704-53486723 MsG0480021102.01.T01:intron 40.0%
TTGAATTCAAAGGGAAGAGG+AGG + Chr4:53482462-53482481 None:intergenic 40.0%
TTTCACACTTCCAGGTTGTT+GGG - Chr4:53486665-53486684 MsG0480021102.01.T01:intron 40.0%
TTTCTCTCCTCTGCATGTAT+AGG - Chr4:53487024-53487043 MsG0480021102.01.T01:intron 40.0%
TTTGGATTCTGCTGTTGTGA+AGG - Chr4:53482329-53482348 MsG0480021102.01.T01:intron 40.0%
! AAATCTGTCTTCGTGTTGAC+TGG - Chr4:53487295-53487314 MsG0480021102.01.T01:CDS 40.0%
! ACGTATTTTTCCCAACAACC+TGG + Chr4:53486678-53486697 None:intergenic 40.0%
! AGATCTAAAGGCTTTTCTCC+TGG - Chr4:53485851-53485870 MsG0480021102.01.T01:intron 40.0%
! ATAGGGAAGAAGCATGAATC+TGG + Chr4:53486411-53486430 None:intergenic 40.0%
! ATTTTACAACAGACGGAGTC+TGG + Chr4:53487160-53487179 None:intergenic 40.0%
! CGTTGCAGAGTATTAATTGG+AGG + Chr4:53483170-53483189 None:intergenic 40.0%
! GAATACGAAAGCACAGTTGT+CGG - Chr4:53482511-53482530 MsG0480021102.01.T01:intron 40.0%
! TCAGCATCCCTTATTTGATC+AGG - Chr4:53485892-53485911 MsG0480021102.01.T01:intron 40.0%
! TTTGAAGCAAGGGACTTAAC+AGG + Chr4:53484510-53484529 None:intergenic 40.0%
!! AAGCAGGGTATTGGATAGAA+TGG + Chr4:53484196-53484215 None:intergenic 40.0%
!! ATGTCTTGTTTCACACTTCC+AGG - Chr4:53486657-53486676 MsG0480021102.01.T01:intron 40.0%
!! CACTACAAGCTTTGAAGCAA+GGG + Chr4:53484520-53484539 None:intergenic 40.0%
!! CCTGACTATTGTTTTACTGG+TGG - Chr4:53486052-53486071 MsG0480021102.01.T01:intron 40.0%
!! CTATTGTTTTACTGGTGGAG+GGG - Chr4:53486057-53486076 MsG0480021102.01.T01:intron 40.0%
!! GACTATTGTTTTACTGGTGG+AGG - Chr4:53486055-53486074 MsG0480021102.01.T01:intron 40.0%
!! GAGAGTTTAAGAAGCGCTTA+GGG - Chr4:53482260-53482279 MsG0480021102.01.T01:intron 40.0%
!! GTAGACTGCATTTTAGAGGA+AGG - Chr4:53487395-53487414 MsG0480021102.01.T01:CDS 40.0%
!! TACAGGGTTGATGAATGACA+TGG - Chr4:53484088-53484107 MsG0480021102.01.T01:intron 40.0%
!! TACTTTTTGCTCAAACTGCC+CGG + Chr4:53485045-53485064 None:intergenic 40.0%
!! TCACTACAAGCTTTGAAGCA+AGG + Chr4:53484521-53484540 None:intergenic 40.0%
!! TGGACTAAGTTGATGGTAAG+TGG - Chr4:53482917-53482936 MsG0480021102.01.T01:intron 40.0%
!! TGGTTAAGGTTGATAATGGG+AGG - Chr4:53482369-53482388 MsG0480021102.01.T01:intron 40.0%
!!! CGACATCATTTTGAAACGGA+GGG + Chr4:53483074-53483093 None:intergenic 40.0%
AAGTTGGACTCATGGGAGTA+TGG + Chr4:53486368-53486387 None:intergenic 45.0%
ACACTTTATAGCTGGCAACC+TGG - Chr4:53486459-53486478 MsG0480021102.01.T01:intron 45.0%
AGTTATCATCAGCGACTGCA+TGG - Chr4:53484599-53484618 MsG0480021102.01.T01:intron 45.0%
AGTTCCTCAGACAAAGATGC+TGG + Chr4:53486711-53486730 None:intergenic 45.0%
ATGCAGTCGCTGATGATAAC+TGG + Chr4:53484600-53484619 None:intergenic 45.0%
ATTTGCCGAAGTTGGACTCA+TGG + Chr4:53486376-53486395 None:intergenic 45.0%
ATTTGTCACAGAATAGGGGG+GGG + Chr4:53485481-53485500 None:intergenic 45.0%
CAAGCAAAGGCTTAAGCAGA+CGG + Chr4:53486816-53486835 None:intergenic 45.0%
CACAGGGAAAACAGATAGCT+GGG - Chr4:53484819-53484838 MsG0480021102.01.T01:CDS 45.0%
CAGCCAGGTAATGATCTTTC+AGG + Chr4:53484572-53484591 None:intergenic 45.0%
CGTTCTCTGAGTTCCTTGAT+CGG - Chr4:53485825-53485844 MsG0480021102.01.T01:intron 45.0%
CTGAAAGATCATTACCTGGC+TGG - Chr4:53484570-53484589 MsG0480021102.01.T01:intron 45.0%
GATTTGTCACAGAATAGGGG+GGG + Chr4:53485482-53485501 None:intergenic 45.0%
GCAAAGCATGGTTTCTGAGT+AGG + Chr4:53486739-53486758 None:intergenic 45.0%
GCCTGTAAAGAAAAGTAGGG+AGG - Chr4:53485074-53485093 MsG0480021102.01.T01:intron 45.0%
GGAGTGTGAAACTGAACGAA+AGG + Chr4:53484329-53484348 None:intergenic 45.0%
GGATGCTGAGCAAGATATGT+AGG + Chr4:53485881-53485900 None:intergenic 45.0%
GGATTTGTCACAGAATAGGG+GGG + Chr4:53485483-53485502 None:intergenic 45.0%
GGGAAATGAGTGGGATATGA+TGG - Chr4:53484157-53484176 MsG0480021102.01.T01:intron 45.0%
GGGACTTAACAGGCAAAAGT+TGG + Chr4:53484500-53484519 None:intergenic 45.0%
GTTTCACACTTCCAGGTTGT+TGG - Chr4:53486664-53486683 MsG0480021102.01.T01:intron 45.0%
GTTTCCTAAGGTGCAAGACT+TGG - Chr4:53487367-53487386 MsG0480021102.01.T01:CDS 45.0%
TACAGTCAGCTACAAATCGG+TGG + Chr4:53482629-53482648 None:intergenic 45.0%
TACATCAACTATGCCATGCC+AGG + Chr4:53486480-53486499 None:intergenic 45.0%
TACTCCCATGAGTCCAACTT+CGG - Chr4:53486368-53486387 MsG0480021102.01.T01:intron 45.0%
TATATATCCCGCCAAAGTGG+TGG - Chr4:53487426-53487445 MsG0480021102.01.T01:CDS 45.0%
TCACAGGGAAAACAGATAGC+TGG - Chr4:53484818-53484837 MsG0480021102.01.T01:CDS 45.0%
TGCACTTGTGAAGTCAGACA+TGG - Chr4:53484396-53484415 MsG0480021102.01.T01:intron 45.0%
TTTGCCGAAGTTGGACTCAT+GGG + Chr4:53486375-53486394 None:intergenic 45.0%
! ACGACACTCATTTGAAACGG+AGG - Chr4:53483298-53483317 MsG0480021102.01.T01:intron 45.0%
! AGTTGGACTCATGGGAGTAT+GGG + Chr4:53486367-53486386 None:intergenic 45.0%
! CCAAGCAAAGGCTTGTTCTT+CGG + Chr4:53486874-53486893 None:intergenic 45.0%
! CCGATTTGTAGCTGACTGTA+AGG - Chr4:53482629-53482648 MsG0480021102.01.T01:intron 45.0%
! CGACACTCATTTGAAACGGA+GGG - Chr4:53483299-53483318 MsG0480021102.01.T01:intron 45.0%
! GAAGAAGCATGAATCTGGCT+CGG + Chr4:53486406-53486425 None:intergenic 45.0%
! TCTAAAGGCTTTTCTCCTGG+TGG - Chr4:53485854-53485873 MsG0480021102.01.T01:intron 45.0%
!! CCCTCCCTACTTTTCTTTAC+AGG + Chr4:53485078-53485097 None:intergenic 45.0%
!! GGAGAGTTTAAGAAGCGCTT+AGG - Chr4:53482259-53482278 MsG0480021102.01.T01:intron 45.0%
!! GGGAGGTGTAAAGATTTTGG+TGG - Chr4:53482386-53482405 MsG0480021102.01.T01:intron 45.0%
!! TGGGAGCATCCTATAAATCG+TGG - Chr4:53483011-53483030 MsG0480021102.01.T01:intron 45.0%
!! TTAAGAAGCGCTTAGGGCTT+TGG - Chr4:53482266-53482285 MsG0480021102.01.T01:intron 45.0%
!!! AAGTGTGCGGCATTTTTTGC+AGG - Chr4:53485757-53485776 MsG0480021102.01.T01:intron 45.0%
!!! AGTTAGCTTTTGGTGGAGTG+AGG - Chr4:53487481-53487500 MsG0480021102.01.T01:CDS 45.0%
!!! GCGACATCATTTTGAAACGG+AGG + Chr4:53483075-53483094 None:intergenic 45.0%
!!! GTTAGCTTTTGGTGGAGTGA+GGG - Chr4:53487482-53487501 MsG0480021102.01.T01:CDS 45.0%
!!! TGCGGCATTTTTTGCAGGTT+GGG - Chr4:53485762-53485781 MsG0480021102.01.T01:intron 45.0%
AAGGGAAGACATACGGACGT+AGG + Chr4:53482089-53482108 None:intergenic 50.0%
AATGGCGTTACAGTTCCAGC+TGG + Chr4:53486112-53486131 None:intergenic 50.0%
ACATAGTGCCACCACTTTGG+CGG + Chr4:53487437-53487456 None:intergenic 50.0%
ACTGGCCAGCCAAGAAAAAC+TGG - Chr4:53484625-53484644 MsG0480021102.01.T01:intron 50.0%
CAAAGTGGTGGCACTATGTG+CGG - Chr4:53487438-53487457 MsG0480021102.01.T01:CDS 50.0%
CAGGAACTCCTCAAGTGACA+AGG + Chr4:53484553-53484572 None:intergenic 50.0%
CATCTCACGAACTGCTTCTG+CGG + Chr4:53482134-53482153 None:intergenic 50.0%
CATGCTTTGCAATTCCAGCC+AGG - Chr4:53486749-53486768 MsG0480021102.01.T01:intron 50.0%
CCGAAGAACAAGCCTTTGCT+TGG - Chr4:53486871-53486890 MsG0480021102.01.T01:intron 50.0%
CGTCTGCTTAAGCCTTTGCT+TGG - Chr4:53486814-53486833 MsG0480021102.01.T01:intron 50.0%
CTGGCTGGAATTGCAAAGCA+TGG + Chr4:53486751-53486770 None:intergenic 50.0%
GAACTCCTCAAGTGACAAGG+CGG + Chr4:53484550-53484569 None:intergenic 50.0%
GCAAGATATGTAGGACCACC+AGG + Chr4:53485872-53485891 None:intergenic 50.0%
TGTGCATGTTGGAATCACGG+TGG - Chr4:53483912-53483931 MsG0480021102.01.T01:intron 50.0%
TGTTTCGAGAGAGTCGCTGA+TGG + Chr4:53482005-53482024 None:intergenic 50.0%
TTAAACACTCACCTCGCCCT+AGG - Chr4:53486247-53486266 MsG0480021102.01.T01:intron 50.0%
TTACCTCAACCGGAACAGTG+CGG + Chr4:53484686-53484705 None:intergenic 50.0%
TTATAGCTGGCAACCTGGCA+TGG - Chr4:53486464-53486483 MsG0480021102.01.T01:intron 50.0%
TTTGTCACAGAATAGGGGGG+GGG + Chr4:53485480-53485499 None:intergenic 50.0%
! GGAGAAAGCGAGGTTGGTTA+AGG - Chr4:53482355-53482374 MsG0480021102.01.T01:intron 50.0%
! GGGTGGGAGTTTGCTTAGAA+AGG - Chr4:53482305-53482324 MsG0480021102.01.T01:intron 50.0%
!! AAGCACAGAAGAGCACCCTA+AGG + Chr4:53484371-53484390 None:intergenic 50.0%
!! AATGCTTGGTTTGGTCCAGC+TGG - Chr4:53486094-53486113 MsG0480021102.01.T01:intron 50.0%
!! AGCGCTTAGGGCTTTGGATA+TGG - Chr4:53482272-53482291 MsG0480021102.01.T01:intron 50.0%
!! CGCTTAGGGCTTTGGATATG+GGG - Chr4:53482274-53482293 MsG0480021102.01.T01:intron 50.0%
!! GAGCACCCTAAGGCTGTTTT+TGG + Chr4:53484361-53484380 None:intergenic 50.0%
!! GCGCTTAGGGCTTTGGATAT+GGG - Chr4:53482273-53482292 MsG0480021102.01.T01:intron 50.0%
!!! GTGCGGCATTTTTTGCAGGT+TGG - Chr4:53485761-53485780 MsG0480021102.01.T01:intron 50.0%
AAGCAGTTCGTGAGATGGCG+TGG - Chr4:53482137-53482156 MsG0480021102.01.T01:CDS 55.0%
AGCAGTTCGTGAGATGGCGT+GGG - Chr4:53482138-53482157 MsG0480021102.01.T01:CDS 55.0%
AGGTTCGGAGAAAGCGAGGT+TGG - Chr4:53482349-53482368 MsG0480021102.01.T01:intron 55.0%
CAGTATAAAGACGGGAGGGG+AGG + Chr4:53485617-53485636 None:intergenic 55.0%
CATAGTGCCACCACTTTGGC+GGG + Chr4:53487436-53487455 None:intergenic 55.0%
CGCACATAGTGCCACCACTT+TGG + Chr4:53487440-53487459 None:intergenic 55.0%
CGCAGAAGCAGTTCGTGAGA+TGG - Chr4:53482132-53482151 MsG0480021102.01.T01:CDS 55.0%
CTCCACTCCATCTCATCCCA+CGG - Chr4:53482055-53482074 MsG0480021102.01.T01:CDS 55.0%
GTGAAGGTTCGGAGAAAGCG+AGG - Chr4:53482345-53482364 MsG0480021102.01.T01:intron 55.0%
TGAGATGGAGTGGAGGAGTG+TGG + Chr4:53482050-53482069 None:intergenic 55.0%
TGATAACTGGAGAGCCAGCC+AGG + Chr4:53484587-53484606 None:intergenic 55.0%
TTAACTCTGGGCAGGGCCTA+GGG + Chr4:53486266-53486285 None:intergenic 55.0%
TTTAACTCTGGGCAGGGCCT+AGG + Chr4:53486267-53486286 None:intergenic 55.0%
! AGAGTCGCTGATGGATGAGG+TGG + Chr4:53481996-53482015 None:intergenic 55.0%
! GAGAGAGTCGCTGATGGATG+AGG + Chr4:53481999-53482018 None:intergenic 55.0%
! GAGATCCGCCTTGTCACTTG+AGG - Chr4:53484542-53484561 MsG0480021102.01.T01:intron 55.0%
! GAGATGGAGTGGAGGAGTGT+GGG + Chr4:53482049-53482068 None:intergenic 55.0%
CAACACCGAGTGCCAAGGAC+CGG + Chr4:53482176-53482195 None:intergenic 60.0%
CACTCCATCTCATCCCACGG+AGG - Chr4:53482058-53482077 MsG0480021102.01.T01:CDS 60.0%
CGGCGGCAAGGGAAGACATA+CGG + Chr4:53482096-53482115 None:intergenic 60.0%
CGTGGGATGAGATGGAGTGG+AGG + Chr4:53482057-53482076 None:intergenic 60.0%
CTCCGTGGGATGAGATGGAG+TGG + Chr4:53482060-53482079 None:intergenic 60.0%
GGAGATTCTGCGTCGAGCGT+TGG + Chr4:53482028-53482047 None:intergenic 60.0%
GTAGCCTCCGTGGGATGAGA+TGG + Chr4:53482065-53482084 None:intergenic 60.0%
TGACCGCACTGTTCCGGTTG+AGG - Chr4:53484680-53484699 MsG0480021102.01.T01:intron 60.0%
TGCTGGTGACCGCACTGTTC+CGG - Chr4:53484674-53484693 MsG0480021102.01.T01:intron 60.0%
!! TCCTTGGCACTCGGTGTTGC+CGG - Chr4:53482177-53482196 MsG0480021102.01.T01:intron 60.0%
ACCGGCAACACCGAGTGCCA+AGG + Chr4:53482181-53482200 None:intergenic 65.0%
AGCAGCTGCACTCCGGTCCT+TGG - Chr4:53482161-53482180 MsG0480021102.01.T01:CDS 65.0%
ATGTCTTCCCTTGCCGCCGC+CGG - Chr4:53482097-53482116 MsG0480021102.01.T01:CDS 65.0%
GACGTAGGCGTAGCCTCCGT+GGG + Chr4:53482074-53482093 None:intergenic 65.0%
GAGTACGCGTCACGCCACAC+CGG + Chr4:53482199-53482218 None:intergenic 65.0%
GCACTCCGGTCCTTGGCACT+CGG - Chr4:53482168-53482187 MsG0480021102.01.T01:CDS 65.0%
GTGGCGTGACGCGTACTCGA+TGG - Chr4:53482201-53482220 MsG0480021102.01.T01:intron 65.0%
TCAGCGACTGCATGGCGCAC+TGG - Chr4:53484607-53484626 MsG0480021102.01.T01:intron 65.0%
TTCTGCGGCGCGAATGTCGC+CGG + Chr4:53482119-53482138 None:intergenic 65.0%
AATGTCGCCGGCGGCGGCAA+GGG + Chr4:53482107-53482126 None:intergenic 70.0%
GCGTGGGAGCAGCTGCACTC+CGG - Chr4:53482154-53482173 MsG0480021102.01.T01:CDS 70.0%
GGACGTAGGCGTAGCCTCCG+TGG + Chr4:53482075-53482094 None:intergenic 70.0%
!! GGCACTCGGTGTTGCCGGTG+TGG - Chr4:53482182-53482201 MsG0480021102.01.T01:intron 70.0%
GAATGTCGCCGGCGGCGGCA+AGG + Chr4:53482108-53482127 None:intergenic 75.0%
TCTGGGCAGGGCCTAGGGCG+AGG + Chr4:53486261-53486280 None:intergenic 75.0%
TGCGGCGCGAATGTCGCCGG+CGG + Chr4:53482116-53482135 None:intergenic 75.0%
! GGCGCGAATGTCGCCGGCGG+CGG + Chr4:53482113-53482132 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr4 gene 53481983 53487526 53481983 ID=MsG0480021102.01;Name=MsG0480021102.01
Chr4 mRNA 53481983 53487526 53481983 ID=MsG0480021102.01.T01;Parent=MsG0480021102.01;Name=MsG0480021102.01.T01;_AED=0.41;_eAED=0.42;_QI=0|0.6|0.5|1|1|1|6|0|369
Chr4 exon 53487203 53487526 53487203 ID=MsG0480021102.01.T01:exon:2969;Parent=MsG0480021102.01.T01
Chr4 exon 53484808 53485017 53484808 ID=MsG0480021102.01.T01:exon:2968;Parent=MsG0480021102.01.T01
Chr4 exon 53483596 53483730 53483596 ID=MsG0480021102.01.T01:exon:2967;Parent=MsG0480021102.01.T01
Chr4 exon 53483344 53483487 53483344 ID=MsG0480021102.01.T01:exon:2966;Parent=MsG0480021102.01.T01
Chr4 exon 53482739 53482830 53482739 ID=MsG0480021102.01.T01:exon:2965;Parent=MsG0480021102.01.T01
Chr4 exon 53481983 53482187 53481983 ID=MsG0480021102.01.T01:exon:2964;Parent=MsG0480021102.01.T01
Chr4 CDS 53487203 53487526 53487203 ID=MsG0480021102.01.T01:cds;Parent=MsG0480021102.01.T01
Chr4 CDS 53484808 53485017 53484808 ID=MsG0480021102.01.T01:cds;Parent=MsG0480021102.01.T01
Chr4 CDS 53483596 53483730 53483596 ID=MsG0480021102.01.T01:cds;Parent=MsG0480021102.01.T01
Chr4 CDS 53483344 53483487 53483344 ID=MsG0480021102.01.T01:cds;Parent=MsG0480021102.01.T01
Chr4 CDS 53482739 53482830 53482739 ID=MsG0480021102.01.T01:cds;Parent=MsG0480021102.01.T01
Chr4 CDS 53481983 53482187 53481983 ID=MsG0480021102.01.T01:cds;Parent=MsG0480021102.01.T01
Gene Sequence

>MsG0480021102.01.T01

ATGTCAAAAACCACCTCATCCATCAGCGACTCTCTCGAAACACCAACGCTCGACGCAGAATCTCCCACACTCCTCCACTCCATCTCATCCCACGGAGGCTACGCCTACGTCCGTATGTCTTCCCTTGCCGCCGCCGGCGACATTCGCGCCGCAGAAGCAGTTCGTGAGATGGCGTGGGAGCAGCTGCACTCCGGTCCTTGGCACTCGGTGTTGCCGGTGTGGCGTGACGCGTACTCGATGGCGTGTTTGCAAGTTGCGAAATGTTGCTATGAAAATGGAGAGTTTAAGAAGCGCTTAGGGCTTTGGATATGGGGATTATTATGGGTGCTCCAACTTTTGCCTGTTAAGTCCCTTGCTTCAAAGCTTGTAGTGAAGAGATCCGCCTTGTCACTTGAGGAGTTCCTGAAAGATCATTACCTGGCTGGCTCTCCAGTTATCATCAGCGACTGCATGGCGCACTGGCCAGCCAAGAAAAACTGGAATAATATAGATTACTTGCAAAGAGTTGCTGGTGACCGCACTGTTCCGGTTGAGGTTGGGAAAAACTATTTATGTGCAGATTGGAAGCAAGAGCTAGTTACGTTCTCTGAGTTCCTTGATCGGATAAGATCTAAAGGCTTTTCTCCTGGTGGTCCTACATATCTTGCTCAGCATCCCTTATTTGATCAGATAAATGAGCTTCGGAGAGATATCTTTATTCCTGACTATTGTTTTACTGGTGGAGGGGAGCTAAGATCTCTCAATGCTTGGTTTGGTCCAGCTGGAACTGTAACGCCATTACACCATGATCCACATCATAACATACTAGCACAGGTTGTTGGGAAAAATACGTCAGGCTTTATCCAGCATCTTTGTCTGAGGAACTTTTCCCCTACTCAGAAACCATGCTTTGCAATTCCAGCCAGTTTCTTTTGTTTGAAGGTTGATTTAGATGACGTAGATGAATTGAAGTTTCCTAAGGTGCAAGACTTGGAATTTGTAGACTGCATTTTAGAGGAAGGTGAAATGTTATATATCCCGCCAAAGTGGTGGCACTATGTGCGGTCTTTAACTACCAGTTTATCAGTTAGCTTTTGGTGGAGTGAGGGTGAAAGTTCATCTCCATCTTAA
Protein sequence

>MsG0480021102.01.T01

MSKTTSSISDSLETPTLDAESPTLLHSISSHGGYAYVRMSSLAAAGDIRAAEAVREMAWEQLHSGPWHSVLPVWRDAYSMACLQVAKCCYENGEFKKRLGLWIWGLLWVLQLLPVKSLASKLVVKRSALSLEEFLKDHYLAGSPVIISDCMAHWPAKKNWNNIDYLQRVAGDRTVPVEVGKNYLCADWKQELVTFSEFLDRIRSKGFSPGGPTYLAQHPLFDQINELRRDIFIPDYCFTGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKNTSGFIQHLCLRNFSPTQKPCFAIPASFFCLKVDLDDVDELKFPKVQDLEFVDCILEEGEMLYIPPKWWHYVRSLTTSLSVSFWWSEGESSSPS*