Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025052.01.T01 | XP_013453547.1 | 78.421 | 190 | 0 | 1 | 1 | 149 | 1 | 190 | 6.49E-96 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025052.01.T01 | C0SVM5 | 50.311 | 161 | 55 | 6 | 1 | 142 | 1 | 155 | 6.22E-38 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025052.01.T01 | A0A072UCQ4 | 78.421 | 190 | 0 | 1 | 1 | 149 | 1 | 190 | 3.10e-96 | 285 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0580025052.01.T01 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000842.01 | MsG0580025052.01 | 0.838525 | 2.730786e-57 | 3.667262e-54 |
| MsG0180001795.01 | MsG0580025052.01 | -0.882634 | 8.833816e-71 | 5.419905e-67 |
| MsG0180002232.01 | MsG0580025052.01 | 0.853351 | 2.530379e-61 | 5.451554e-58 |
| MsG0180003129.01 | MsG0580025052.01 | -0.824488 | 7.855479e-54 | 6.968133e-51 |
| MsG0180003624.01 | MsG0580025052.01 | 0.808002 | 3.835653e-50 | 2.168107e-47 |
| MsG0280011113.01 | MsG0580025052.01 | 0.805797 | 1.122395e-49 | 5.993217e-47 |
| MsG0280011202.01 | MsG0580025052.01 | -0.802782 | 4.765330e-49 | 2.354912e-46 |
| MsG0380012366.01 | MsG0580025052.01 | -0.811035 | 8.561551e-51 | 5.243867e-48 |
| MsG0380013071.01 | MsG0580025052.01 | -0.863724 | 2.029991e-64 | 6.217085e-61 |
| MsG0380013116.01 | MsG0580025052.01 | 0.824776 | 6.721412e-54 | 6.012299e-51 |
| MsG0380013368.01 | MsG0580025052.01 | 0.831588 | 1.533198e-55 | 1.671363e-52 |
| MsG0480018497.01 | MsG0580025052.01 | 0.844720 | 6.346448e-59 | 1.033765e-55 |
| MsG0480021102.01 | MsG0580025052.01 | -0.878898 | 1.933533e-69 | 1.026969e-65 |
| MsG0480021249.01 | MsG0580025052.01 | -0.895600 | 8.217113e-76 | 8.586654e-72 |
| MsG0480021250.01 | MsG0580025052.01 | -0.827828 | 1.260672e-54 | 1.230906e-51 |
| MsG0480021251.01 | MsG0580025052.01 | -0.895291 | 1.101599e-75 | 1.136277e-71 |
| MsG0480022069.01 | MsG0580025052.01 | 0.903471 | 3.350956e-79 | 4.968099e-75 |
| MsG0580025052.01 | MsG0580025985.01 | 0.845442 | 4.051114e-59 | 6.751750e-56 |
| MsG0580025052.01 | MsG0580029166.01 | -0.811039 | 8.546932e-51 | 5.235314e-48 |
| MsG0580025052.01 | MsG0680034837.01 | 0.857879 | 1.208015e-62 | 3.025779e-59 |
| MsG0580025052.01 | MsG0780040008.01 | -0.885078 | 1.108041e-71 | 7.498574e-68 |
| MsG0580025052.01 | MsG0780040038.01 | -0.892866 | 1.069014e-74 | 9.947239e-71 |
| MsG0580025052.01 | MsG0780041812.01 | 0.888127 | 7.772117e-73 | 5.943285e-69 |
| MsG0580025052.01 | MsG0880042893.01 | 0.815639 | 8.337635e-52 | 5.780456e-49 |
| MsG0580025052.01 | MsG0880046449.01 | -0.809158 | 2.172374e-50 | 1.266011e-47 |
| MsG0580025052.01 | MsG0880046472.01 | -0.821168 | 4.659579e-53 | 3.762479e-50 |
| MsG0580025052.01 | MsG0880047448.01 | -0.800186 | 1.621981e-48 | 7.504089e-46 |
| MsG0380016315.01 | MsG0580025052.01 | 0.851283 | 9.814840e-61 | 1.976696e-57 |
| MsG0380017254.01 | MsG0580025052.01 | -0.881648 | 2.016307e-70 | 1.190834e-66 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025052.01.T01 | MTR_5g021580 | 78.421 | 190 | 0 | 1 | 1 | 149 | 1 | 190 | 7.86e-100 | 285 |
| MsG0580025052.01.T01 | MTR_5g021580 | 77.717 | 184 | 0 | 1 | 1 | 143 | 1 | 184 | 8.91e-95 | 271 |
| MsG0580025052.01.T01 | MTR_2g073370 | 61.538 | 65 | 24 | 1 | 1 | 64 | 1 | 65 | 2.49e-18 | 79.7 |
| MsG0580025052.01.T01 | MTR_2g099010 | 56.452 | 62 | 26 | 1 | 1 | 61 | 1 | 62 | 1.48e-15 | 71.2 |
| MsG0580025052.01.T01 | MTR_2g099010 | 56.452 | 62 | 26 | 1 | 1 | 61 | 1 | 62 | 1.59e-15 | 71.2 |
| MsG0580025052.01.T01 | MTR_3g117320 | 48.485 | 66 | 32 | 1 | 1 | 64 | 1 | 66 | 2.17e-15 | 70.5 |
| MsG0580025052.01.T01 | MTR_4g067320 | 53.846 | 65 | 29 | 1 | 1 | 64 | 1 | 65 | 2.82e-15 | 70.5 |
| MsG0580025052.01.T01 | MTR_4g067320 | 53.846 | 65 | 29 | 1 | 1 | 64 | 1 | 65 | 3.46e-15 | 70.5 |
| MsG0580025052.01.T01 | MTR_3g113070 | 53.226 | 62 | 26 | 1 | 1 | 59 | 1 | 62 | 1.46e-14 | 68.6 |
| MsG0580025052.01.T01 | MTR_3g105710 | 51.471 | 68 | 25 | 1 | 4 | 71 | 5 | 64 | 8.01e-14 | 67.0 |
| MsG0580025052.01.T01 | MTR_1g023260 | 51.613 | 62 | 28 | 1 | 1 | 60 | 1 | 62 | 1.27e-13 | 66.6 |
| MsG0580025052.01.T01 | MTR_1g013450 | 47.059 | 68 | 28 | 1 | 4 | 71 | 5 | 64 | 3.13e-13 | 65.9 |
| MsG0580025052.01.T01 | MTR_4g071200 | 48.387 | 62 | 30 | 1 | 1 | 60 | 1 | 62 | 3.36e-13 | 64.7 |
| MsG0580025052.01.T01 | MTR_1g023260 | 51.613 | 62 | 28 | 1 | 1 | 60 | 1 | 62 | 3.45e-13 | 64.3 |
| MsG0580025052.01.T01 | MTR_7g018170 | 46.269 | 67 | 28 | 1 | 5 | 71 | 26 | 84 | 3.88e-11 | 60.1 |
| MsG0580025052.01.T01 | MTR_4g128930 | 42.254 | 71 | 33 | 1 | 4 | 74 | 21 | 83 | 4.13e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025052.01.T01 | AT4G38960 | 50.311 | 161 | 55 | 6 | 1 | 142 | 1 | 155 | 6.34e-39 | 130 |
| MsG0580025052.01.T01 | AT4G38960 | 50.311 | 161 | 55 | 6 | 1 | 142 | 1 | 155 | 6.34e-39 | 130 |
| MsG0580025052.01.T01 | AT2G21320 | 45.062 | 162 | 65 | 3 | 1 | 143 | 1 | 157 | 2.82e-34 | 118 |
| MsG0580025052.01.T01 | AT4G38960 | 39.706 | 204 | 55 | 7 | 1 | 142 | 1 | 198 | 4.97e-31 | 111 |
| MsG0580025052.01.T01 | AT1G78600 | 60.000 | 65 | 25 | 1 | 1 | 64 | 1 | 65 | 2.50e-19 | 82.4 |
| MsG0580025052.01.T01 | AT1G78600 | 60.000 | 65 | 25 | 1 | 1 | 64 | 1 | 65 | 2.78e-19 | 82.4 |
| MsG0580025052.01.T01 | AT4G38960 | 40.769 | 130 | 52 | 6 | 34 | 144 | 1 | 124 | 5.92e-17 | 73.2 |
| MsG0580025052.01.T01 | AT1G75540 | 50.769 | 65 | 28 | 1 | 1 | 61 | 1 | 65 | 9.24e-16 | 72.8 |
| MsG0580025052.01.T01 | AT4G39070 | 54.098 | 61 | 26 | 1 | 1 | 59 | 1 | 61 | 1.14e-15 | 71.6 |
| MsG0580025052.01.T01 | AT4G38960 | 40.625 | 128 | 51 | 6 | 34 | 142 | 1 | 122 | 2.85e-15 | 68.9 |
| MsG0580025052.01.T01 | AT4G38960 | 40.625 | 128 | 51 | 6 | 34 | 142 | 1 | 122 | 2.85e-15 | 68.9 |
| MsG0580025052.01.T01 | AT2G24790 | 50.704 | 71 | 27 | 1 | 4 | 74 | 7 | 69 | 7.05e-15 | 69.3 |
| MsG0580025052.01.T01 | AT2G24790 | 50.704 | 71 | 27 | 1 | 4 | 74 | 7 | 69 | 9.08e-15 | 69.7 |
| MsG0580025052.01.T01 | AT1G06040 | 57.377 | 61 | 25 | 1 | 1 | 60 | 1 | 61 | 1.64e-14 | 68.6 |
| MsG0580025052.01.T01 | AT1G06040 | 57.377 | 61 | 25 | 1 | 1 | 60 | 1 | 61 | 2.40e-14 | 67.0 |
| MsG0580025052.01.T01 | AT5G24930 | 47.887 | 71 | 29 | 1 | 4 | 74 | 5 | 67 | 1.20e-13 | 67.0 |
| MsG0580025052.01.T01 | AT2G31380 | 56.667 | 60 | 25 | 1 | 1 | 59 | 1 | 60 | 2.55e-13 | 65.5 |
| MsG0580025052.01.T01 | AT5G15850 | 34.328 | 134 | 65 | 5 | 5 | 135 | 12 | 125 | 9.03e-12 | 62.0 |
| MsG0580025052.01.T01 | AT4G10240 | 46.479 | 71 | 31 | 1 | 1 | 64 | 1 | 71 | 1.22e-11 | 59.7 |
| MsG0580025052.01.T01 | AT3G02380 | 46.269 | 67 | 28 | 1 | 5 | 71 | 16 | 74 | 2.64e-11 | 60.5 |
Find 38 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGATGATGGAAAGTTAT+AGG | 0.287871 | 5:+13283662 | None:intergenic |
| CTTACAAACCCACATGGATT+TGG | 0.305253 | 5:-13283574 | MsG0580025052.01.T01:intron |
| TGTTCATGTATTCTGTTGTT+AGG | 0.314824 | 5:+13281976 | None:intergenic |
| AATAATCAGGTTAGAGTTCA+TGG | 0.327088 | 5:-13281946 | MsG0580025052.01.T01:CDS |
| AGTTAGCTAGTAGACATGTT+AGG | 0.334611 | 5:-13282793 | MsG0580025052.01.T01:CDS |
| TTAGAATTCCCATCAGCATT+AGG | 0.367971 | 5:+13282033 | None:intergenic |
| TGAACATGCATCAAATAATC+AGG | 0.417562 | 5:-13281959 | MsG0580025052.01.T01:CDS |
| GCCGGGTTGTCTGCATTACT+AGG | 0.455216 | 5:+13282168 | None:intergenic |
| AAGATGGAGGTTGTTGATGA+TGG | 0.460545 | 5:+13283651 | None:intergenic |
| GAGAGAAGCAACAAAATCAT+AGG | 0.461871 | 5:-13282080 | MsG0580025052.01.T01:CDS |
| GGATCTAGAGGTTGTGAAGC+CGG | 0.462473 | 5:+13282150 | None:intergenic |
| TCAGCATTAGGTTCTGAAGT+TGG | 0.480629 | 5:+13282045 | None:intergenic |
| GTGATGAAGTTTGATGAAGA+TGG | 0.483306 | 5:+13283635 | None:intergenic |
| TCGCACCGCGGCACGTCACT+CGG | 0.487301 | 5:+13282755 | None:intergenic |
| ACCCTTCAACCCAAACCAAA+AGG | 0.499384 | 5:-13283707 | MsG0580025052.01.T01:five_prime_UTR |
| GTTAGCTAGTAGACATGTTA+GGG | 0.499857 | 5:-13282792 | MsG0580025052.01.T01:CDS |
| TTAGGTTCTGAAGTTGGAAC+CGG | 0.500416 | 5:+13282051 | None:intergenic |
| TGCTGATGGGAATTCTAAGA+TGG | 0.518367 | 5:-13282028 | MsG0580025052.01.T01:CDS |
| GATCCAGGTGATATTAAAAG+AGG | 0.532561 | 5:-13282132 | MsG0580025052.01.T01:CDS |
| GATCTAGAGGTTGTGAAGCC+GGG | 0.534120 | 5:+13282151 | None:intergenic |
| TTAATATCACCTGGATCTAG+AGG | 0.539036 | 5:+13282138 | None:intergenic |
| GCTTCACAACCTCTAGATCC+AGG | 0.543997 | 5:-13282147 | MsG0580025052.01.T01:CDS |
| ACTTCAGAACCTAATGCTGA+TGG | 0.548946 | 5:-13282042 | MsG0580025052.01.T01:CDS |
| GCTAGTAGACATGTTAGGGT+TGG | 0.553453 | 5:-13282788 | MsG0580025052.01.T01:CDS |
| ACCTAGTAATGCAGACAACC+CGG | 0.558690 | 5:-13282169 | MsG0580025052.01.T01:CDS |
| AACTTTCTTACAAACCCACA+TGG | 0.572929 | 5:-13283580 | MsG0580025052.01.T01:five_prime_UTR |
| ACAAAATCATAGGATGCCTC+CGG | 0.578363 | 5:-13282070 | MsG0580025052.01.T01:CDS |
| ATAATCAGGTTAGAGTTCAT+GGG | 0.583574 | 5:-13281945 | MsG0580025052.01.T01:CDS |
| CAAGTCCGAGTGACGTGCCG+CGG | 0.583612 | 5:-13282760 | MsG0580025052.01.T01:CDS |
| CTTCAGAACCTAATGCTGAT+GGG | 0.588602 | 5:-13282041 | MsG0580025052.01.T01:CDS |
| CTGTCGTGCTTGTGATGAGA+AGG | 0.598560 | 5:-13283314 | MsG0580025052.01.T01:intron |
| GGTTCTGAAGTTGGAACCGG+AGG | 0.621508 | 5:+13282054 | None:intergenic |
| ATGAAGTTTGATGAAGATGG+AGG | 0.626151 | 5:+13283638 | None:intergenic |
| GATATTCACCAAATCCATGT+GGG | 0.642038 | 5:+13283566 | None:intergenic |
| GACATATGTGAGAATGCCCC+TGG | 0.645262 | 5:-13282734 | MsG0580025052.01.T01:intron |
| AGATATTCACCAAATCCATG+TGG | 0.682468 | 5:+13283565 | None:intergenic |
| AGCAGCACAGAAAACTATAG+CGG | 0.689026 | 5:+13283351 | None:intergenic |
| TTCTCACATATGTCGCACCG+CGG | 0.743597 | 5:+13282743 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCCAATTATAAAAAATTGA+TGG | + | Chr5:13282454-13282473 | None:intergenic | 15.0% |
| !! | TTATCAAAAAAAACTATGTT+GGG | + | Chr5:13282066-13282085 | None:intergenic | 15.0% |
| !! | TTTATCAAAAAAAACTATGT+TGG | + | Chr5:13282067-13282086 | None:intergenic | 15.0% |
| !!! | ATAATAATTTTGATACATTG+AGG | + | Chr5:13283257-13283276 | None:intergenic | 15.0% |
| !!! | ATTTGATTTGATATTTTTTG+TGG | - | Chr5:13282625-13282644 | MsG0580025052.01.T01:intron | 15.0% |
| !!! | TAATAATTTTGATACATTGA+GGG | + | Chr5:13283256-13283275 | None:intergenic | 15.0% |
| !!! | TATTTTAAAGTAGATAATTC+AGG | - | Chr5:13282167-13282186 | MsG0580025052.01.T01:CDS | 15.0% |
| !! | GATTATACTTAAAACTAACT+TGG | + | Chr5:13282764-13282783 | None:intergenic | 20.0% |
| !! | TTGTGTAAATTCAAAATCTA+AGG | - | Chr5:13282651-13282670 | MsG0580025052.01.T01:intron | 20.0% |
| !!! | AATTCAAGACTAATTCATTT+TGG | + | Chr5:13283186-13283205 | None:intergenic | 20.0% |
| !!! | AGTTAGTTTTAAGTATAATC+TGG | - | Chr5:13282764-13282783 | MsG0580025052.01.T01:CDS | 20.0% |
| !!! | GACCATCAATTTTTTATAAT+TGG | - | Chr5:13282449-13282468 | MsG0580025052.01.T01:intron | 20.0% |
| !!! | TTTTAAGTATAATCTGGTAT+TGG | - | Chr5:13282770-13282789 | MsG0580025052.01.T01:CDS | 20.0% |
| ! | GGTATTATACATACATTTGA+AGG | + | Chr5:13283456-13283475 | None:intergenic | 25.0% |
| ! | TTAACCTAATCCAACATAAA+TGG | + | Chr5:13282552-13282571 | None:intergenic | 25.0% |
| ! | TTATGAAACTAAATTGCAAG+TGG | + | Chr5:13282588-13282607 | None:intergenic | 25.0% |
| ! | TTCTTTAAACAAAATCGAGA+AGG | + | Chr5:13282739-13282758 | None:intergenic | 25.0% |
| !! | GACTAATTCATTTTGGATAA+AGG | + | Chr5:13283179-13283198 | None:intergenic | 25.0% |
| !! | TTTAAAGTAGATAATTCAGG+TGG | - | Chr5:13282170-13282189 | MsG0580025052.01.T01:CDS | 25.0% |
| !!! | AATGACGATTTTAGCTTATA+AGG | + | Chr5:13282702-13282721 | None:intergenic | 25.0% |
| !!! | TATCTTTTGTTAGTCACTTT+CGG | - | Chr5:13283326-13283345 | MsG0580025052.01.T01:CDS | 25.0% |
| !!! | TTGAAATTTTGATACGTTCA+GGG | - | Chr5:13283357-13283376 | MsG0580025052.01.T01:CDS | 25.0% |
| !!! | TTTGAAATTTTGATACGTTC+AGG | - | Chr5:13283356-13283375 | MsG0580025052.01.T01:CDS | 25.0% |
| AAAAGAAGAAACTTCTTACC+AGG | + | Chr5:13282960-13282979 | None:intergenic | 30.0% | |
| AAAGAAGAAACTTCTTACCA+GGG | + | Chr5:13282959-13282978 | None:intergenic | 30.0% | |
| AATAATCAGGTTAGAGTTCA+TGG | - | Chr5:13283727-13283746 | MsG0580025052.01.T01:five_prime_UTR | 30.0% | |
| ACTAACAAAAGATACATCTG+AGG | + | Chr5:13283320-13283339 | None:intergenic | 30.0% | |
| ATAATCAGGTTAGAGTTCAT+GGG | - | Chr5:13283728-13283747 | MsG0580025052.01.T01:five_prime_UTR | 30.0% | |
| ATGGAAGATATCTTCTCTTT+AGG | - | Chr5:13283131-13283150 | MsG0580025052.01.T01:intron | 30.0% | |
| CATATCACATTGCAAACAAA+GGG | + | Chr5:13283083-13283102 | None:intergenic | 30.0% | |
| CCACTTCCTAAACAAAAAAT+GGG | - | Chr5:13283571-13283590 | MsG0580025052.01.T01:intron | 30.0% | |
| CTTATAAGGTCAAACTCTTA+CGG | + | Chr5:13282688-13282707 | None:intergenic | 30.0% | |
| GACTAATAAAAGACACATTC+AGG | + | Chr5:13283289-13283308 | None:intergenic | 30.0% | |
| GATTAGGTTAAAGATTGGAT+TGG | - | Chr5:13282561-13282580 | MsG0580025052.01.T01:intron | 30.0% | |
| TCATATCACATTGCAAACAA+AGG | + | Chr5:13283084-13283103 | None:intergenic | 30.0% | |
| TCCACTTCCTAAACAAAAAA+TGG | - | Chr5:13283570-13283589 | MsG0580025052.01.T01:intron | 30.0% | |
| TGAACATGCATCAAATAATC+AGG | - | Chr5:13283714-13283733 | MsG0580025052.01.T01:five_prime_UTR | 30.0% | |
| TGTGATATGATAGTTCATGT+TGG | - | Chr5:13283094-13283113 | MsG0580025052.01.T01:intron | 30.0% | |
| TGTTCATGTATTCTGTTGTT+AGG | + | Chr5:13283700-13283719 | None:intergenic | 30.0% | |
| TTGAATGAGTCCATTTATGT+TGG | - | Chr5:13282539-13282558 | MsG0580025052.01.T01:intron | 30.0% | |
| ! | GGAAAGTTATAGGATTTTGA+AGG | + | Chr5:13282004-13282023 | None:intergenic | 30.0% |
| ! | GTGTCTTTTATTAGTCAGTT+TGG | - | Chr5:13283293-13283312 | MsG0580025052.01.T01:intron | 30.0% |
| ! | TGTTGGATTAGGTTAAAGAT+TGG | - | Chr5:13282556-13282575 | MsG0580025052.01.T01:intron | 30.0% |
| ! | TTTTAATCCTTGAATGTGTG+AGG | - | Chr5:13283217-13283236 | MsG0580025052.01.T01:intron | 30.0% |
| !! | ATAGGATTTTGAAGGAGTTT+GGG | + | Chr5:13281996-13282015 | None:intergenic | 30.0% |
| !! | ATCTTTTGTTAGTCACTTTC+GGG | - | Chr5:13283327-13283346 | MsG0580025052.01.T01:CDS | 30.0% |
| !! | TATAGGATTTTGAAGGAGTT+TGG | + | Chr5:13281997-13282016 | None:intergenic | 30.0% |
| !! | TGGAATTTGATTGATTTTCC+TGG | - | Chr5:13282790-13282809 | MsG0580025052.01.T01:CDS | 30.0% |
| !! | TGTTGATGATGGAAAGTTAT+AGG | + | Chr5:13282014-13282033 | None:intergenic | 30.0% |
| !!! | TTCTCTCCCATTTTTTGTTT+AGG | + | Chr5:13283580-13283599 | None:intergenic | 30.0% |
| AACTTTCTTACAAACCCACA+TGG | - | Chr5:13282093-13282112 | MsG0580025052.01.T01:CDS | 35.0% | |
| AAGAAGAAACTTCTTACCAG+GGG | + | Chr5:13282958-13282977 | None:intergenic | 35.0% | |
| AGATATTCACCAAATCCATG+TGG | + | Chr5:13282111-13282130 | None:intergenic | 35.0% | |
| AGTTAGCTAGTAGACATGTT+AGG | - | Chr5:13282880-13282899 | MsG0580025052.01.T01:intron | 35.0% | |
| ATCAGAAGAACAACACTACA+AGG | + | Chr5:13282986-13283005 | None:intergenic | 35.0% | |
| ATGAAGTTTGATGAAGATGG+AGG | + | Chr5:13282038-13282057 | None:intergenic | 35.0% | |
| CTGGAAACTATGAAACAAAG+AGG | + | Chr5:13283477-13283496 | None:intergenic | 35.0% | |
| GACATCGTTTCACACATTTA+GGG | - | Chr5:13283388-13283407 | MsG0580025052.01.T01:CDS | 35.0% | |
| GAGAGAAGCAACAAAATCAT+AGG | - | Chr5:13283593-13283612 | MsG0580025052.01.T01:five_prime_UTR | 35.0% | |
| GAGTCCATTTATGTTGGATT+AGG | - | Chr5:13282545-13282564 | MsG0580025052.01.T01:intron | 35.0% | |
| GATATGATAGTTCATGTTGG+TGG | - | Chr5:13283097-13283116 | MsG0580025052.01.T01:intron | 35.0% | |
| GATATTCACCAAATCCATGT+GGG | + | Chr5:13282110-13282129 | None:intergenic | 35.0% | |
| GATCCAGGTGATATTAAAAG+AGG | - | Chr5:13283541-13283560 | MsG0580025052.01.T01:intron | 35.0% | |
| GGTCAATGTCTTTCAACTAA+TGG | - | Chr5:13282811-13282830 | MsG0580025052.01.T01:CDS | 35.0% | |
| GTGATGAAGTTTGATGAAGA+TGG | + | Chr5:13282041-13282060 | None:intergenic | 35.0% | |
| GTTAGCTAGTAGACATGTTA+GGG | - | Chr5:13282881-13282900 | MsG0580025052.01.T01:intron | 35.0% | |
| TGACATCGTTTCACACATTT+AGG | - | Chr5:13283387-13283406 | MsG0580025052.01.T01:CDS | 35.0% | |
| TTAATATCACCTGGATCTAG+AGG | + | Chr5:13283538-13283557 | None:intergenic | 35.0% | |
| TTAGAATTCCCATCAGCATT+AGG | + | Chr5:13283643-13283662 | None:intergenic | 35.0% | |
| TTAGTTGAAAGACATTGACC+AGG | + | Chr5:13282811-13282830 | None:intergenic | 35.0% | |
| TTCTTCTATTGCGAAACAGA+TGG | - | Chr5:13283052-13283071 | MsG0580025052.01.T01:intron | 35.0% | |
| ! | CTCTTTGTTTCATAGTTTCC+AGG | - | Chr5:13283475-13283494 | MsG0580025052.01.T01:intron | 35.0% |
| ! | GGTTCAAAGTTTGCAACTTT+TGG | - | Chr5:13282832-13282851 | MsG0580025052.01.T01:intron | 35.0% |
| ! | TGTCCTCTTTTAATATCACC+TGG | + | Chr5:13283547-13283566 | None:intergenic | 35.0% |
| !! | TAGGATTTTGAAGGAGTTTG+GGG | + | Chr5:13281995-13282014 | None:intergenic | 35.0% |
| !! | TCTTTTGTTAGTCACTTTCG+GGG | - | Chr5:13283328-13283347 | MsG0580025052.01.T01:CDS | 35.0% |
| !! | TTGCAACTTTTGGAAATTGC+AGG | - | Chr5:13282842-13282861 | MsG0580025052.01.T01:intron | 35.0% |
| !!! | CCCATTTTTTGTTTAGGAAG+TGG | + | Chr5:13283574-13283593 | None:intergenic | 35.0% |
| ACAAAATCATAGGATGCCTC+CGG | - | Chr5:13283603-13283622 | MsG0580025052.01.T01:five_prime_UTR | 40.0% | |
| ACTTCAGAACCTAATGCTGA+TGG | - | Chr5:13283631-13283650 | MsG0580025052.01.T01:five_prime_UTR | 40.0% | |
| AGCAGCACAGAAAACTATAG+CGG | + | Chr5:13282325-13282344 | None:intergenic | 40.0% | |
| CTTACAAACCCACATGGATT+TGG | - | Chr5:13282099-13282118 | MsG0580025052.01.T01:CDS | 40.0% | |
| CTTCAGAACCTAATGCTGAT+GGG | - | Chr5:13283632-13283651 | MsG0580025052.01.T01:five_prime_UTR | 40.0% | |
| TCTCTTTAGGCAAAGAGTTG+AGG | - | Chr5:13283144-13283163 | MsG0580025052.01.T01:intron | 40.0% | |
| ! | AAGATGGAGGTTGTTGATGA+TGG | + | Chr5:13282025-13282044 | None:intergenic | 40.0% |
| ! | TGCTGATGGGAATTCTAAGA+TGG | - | Chr5:13283645-13283664 | MsG0580025052.01.T01:five_prime_UTR | 40.0% |
| !! | AGGATTTTGAAGGAGTTTGG+GGG | + | Chr5:13281994-13282013 | None:intergenic | 40.0% |
| !! | TCAGCATTAGGTTCTGAAGT+TGG | + | Chr5:13283631-13283650 | None:intergenic | 40.0% |
| !! | TTAGGTTCTGAAGTTGGAAC+CGG | + | Chr5:13283625-13283644 | None:intergenic | 40.0% |
| !!! | ACCTTTTGGTTTGGGTTGAA+GGG | + | Chr5:13281970-13281989 | None:intergenic | 40.0% |
| ACCCTTCAACCCAAACCAAA+AGG | - | Chr5:13281966-13281985 | MsG0580025052.01.T01:CDS | 45.0% | |
| ACCTAGTAATGCAGACAACC+CGG | - | Chr5:13283504-13283523 | MsG0580025052.01.T01:intron | 45.0% | |
| GCATTACTAGGTTTATCGCC+TGG | + | Chr5:13283496-13283515 | None:intergenic | 45.0% | |
| GCTAGTAGACATGTTAGGGT+TGG | - | Chr5:13282885-13282904 | MsG0580025052.01.T01:intron | 45.0% | |
| !! | AGTTTTCTGTGCTGCTGATG+AGG | - | Chr5:13282329-13282348 | MsG0580025052.01.T01:intron | 45.0% |
| !! | GGATTTTGAAGGAGTTTGGG+GGG | + | Chr5:13281993-13282012 | None:intergenic | 45.0% |
| !! | GTTGGTGGTAAAAGAACGCA+TGG | - | Chr5:13283112-13283131 | MsG0580025052.01.T01:intron | 45.0% |
| !!! | GACCTTTTGGTTTGGGTTGA+AGG | + | Chr5:13281971-13281990 | None:intergenic | 45.0% |
| CTGTCGTGCTTGTGATGAGA+AGG | - | Chr5:13282359-13282378 | MsG0580025052.01.T01:intron | 50.0% | |
| GACATATGTGAGAATGCCCC+TGG | - | Chr5:13282939-13282958 | MsG0580025052.01.T01:intron | 50.0% | |
| GATCTAGAGGTTGTGAAGCC+GGG | + | Chr5:13283525-13283544 | None:intergenic | 50.0% | |
| GCTTCACAACCTCTAGATCC+AGG | - | Chr5:13283526-13283545 | MsG0580025052.01.T01:intron | 50.0% | |
| GGATCTAGAGGTTGTGAAGC+CGG | + | Chr5:13283526-13283545 | None:intergenic | 50.0% | |
| GTGACTGCCTCACACATTCA+AGG | + | Chr5:13283227-13283246 | None:intergenic | 50.0% | |
| TTCTCACATATGTCGCACCG+CGG | + | Chr5:13282933-13282952 | None:intergenic | 50.0% | |
| !! | TTTGGGGGGACCTTTTGGTT+TGG | + | Chr5:13281979-13281998 | None:intergenic | 50.0% |
| !!! | TTGGGGGGACCTTTTGGTTT+GGG | + | Chr5:13281978-13281997 | None:intergenic | 50.0% |
| GCCGGGTTGTCTGCATTACT+AGG | + | Chr5:13283508-13283527 | None:intergenic | 55.0% | |
| ! | AGGAGTTTGGGGGGACCTTT+TGG | + | Chr5:13281984-13282003 | None:intergenic | 55.0% |
| !! | GGTTCTGAAGTTGGAACCGG+AGG | + | Chr5:13283622-13283641 | None:intergenic | 55.0% |
| CAAGTCCGAGTGACGTGCCG+CGG | - | Chr5:13282913-13282932 | MsG0580025052.01.T01:intron | 65.0% | |
| TCGCACCGCGGCACGTCACT+CGG | + | Chr5:13282921-13282940 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 13281939 | 13283756 | 13281939 | ID=MsG0580025052.01;Name=MsG0580025052.01 |
| Chr5 | mRNA | 13281939 | 13283756 | 13281939 | ID=MsG0580025052.01.T01;Parent=MsG0580025052.01;Name=MsG0580025052.01.T01;_AED=0.40;_eAED=0.41;_QI=206|0.66|0.75|1|0.66|0.5|4|0|149 |
| Chr5 | exon | 13281939 | 13282198 | 13281939 | ID=MsG0580025052.01.T01:exon:5538;Parent=MsG0580025052.01.T01 |
| Chr5 | exon | 13282735 | 13282831 | 13282735 | ID=MsG0580025052.01.T01:exon:5537;Parent=MsG0580025052.01.T01 |
| Chr5 | exon | 13283315 | 13283431 | 13283315 | ID=MsG0580025052.01.T01:exon:5536;Parent=MsG0580025052.01.T01 |
| Chr5 | exon | 13283575 | 13283756 | 13283575 | ID=MsG0580025052.01.T01:exon:5535;Parent=MsG0580025052.01.T01 |
| Chr5 | five_prime_UTR | 13283575 | 13283756 | 13283575 | ID=MsG0580025052.01.T01:five_prime_utr;Parent=MsG0580025052.01.T01 |
| Chr5 | five_prime_UTR | 13283408 | 13283431 | 13283408 | ID=MsG0580025052.01.T01:five_prime_utr;Parent=MsG0580025052.01.T01 |
| Chr5 | CDS | 13283315 | 13283407 | 13283315 | ID=MsG0580025052.01.T01:cds;Parent=MsG0580025052.01.T01 |
| Chr5 | CDS | 13282735 | 13282831 | 13282735 | ID=MsG0580025052.01.T01:cds;Parent=MsG0580025052.01.T01 |
| Chr5 | CDS | 13281939 | 13282198 | 13281939 | ID=MsG0580025052.01.T01:cds;Parent=MsG0580025052.01.T01 |
| Gene Sequence |
| Protein sequence |
