AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013368.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013368.01.T01 MTR_3g041700 94.855 447 9 1 1 447 1 433 0.0 868
MsG0380013368.01.T01 MTR_3g041700 94.855 447 9 1 1 447 22 454 0.0 866
MsG0380013368.01.T01 MTR_3g041700 93.817 372 9 1 76 447 1 358 0.0 703
MsG0380013368.01.T01 MTR_7g089330 76.129 310 73 1 139 447 3 312 6.33e-172 484
MsG0380013368.01.T01 MTR_7g089330 75.080 313 77 1 136 447 90 402 1.47e-171 487
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013368.01.T01 AT2G26800 70.089 448 118 3 1 447 1 433 0.0 637
MsG0380013368.01.T01 AT2G26800 70.089 448 118 3 1 447 36 468 0.0 636
MsG0380013368.01.T01 AT2G26800 70.089 448 118 3 1 447 36 468 0.0 636
MsG0380013368.01.T01 AT2G26800 69.211 393 106 2 56 447 10 388 0.0 551
MsG0380013368.01.T01 AT2G26800 64.848 330 101 2 1 330 36 350 5.77e-151 433

Find 130 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAGTTGCACCTTTAAATT+AGG 0.211209 3:-35957646 None:intergenic
AGTTCTGACTCCTAATTTAA+AGG 0.233362 3:+35957636 MsG0380013368.01.T01:CDS
CACCGTAGTTCCAATGCTTT+TGG 0.246522 3:+35959079 MsG0380013368.01.T01:CDS
AGCTAAAGCACTATATGATA+TGG 0.269941 3:+35958457 MsG0380013368.01.T01:CDS
AAGCAGTTGGGGCGCCCCTC+TGG 0.273848 3:+35959875 MsG0380013368.01.T01:CDS
GGGAGAAACACGATGAAATT+TGG 0.278565 3:+35956697 MsG0380013368.01.T01:CDS
TTTGAAGCTGCTGTTGCTGC+TGG 0.278986 3:+35957734 MsG0380013368.01.T01:CDS
CATGCAAGATATGGCATATA+AGG 0.283069 3:+35956783 MsG0380013368.01.T01:CDS
ATCAAAACCAACGTTGATAT+TGG 0.285460 3:+35959821 MsG0380013368.01.T01:CDS
TTTACAGAATACCTTCAAAA+TGG 0.293301 3:-35960298 None:intergenic
CCACTTCACCATGTCAAGTT+TGG 0.300052 3:+35956252 MsG0380013368.01.T01:exon
CCGTCCACAAGTAGATAATT+TGG 0.313604 3:+35956351 MsG0380013368.01.T01:CDS
GACTTCATCGGCAAGCAGTT+GGG 0.324564 3:+35959863 MsG0380013368.01.T01:CDS
AACTGGAATTGAGAGCTCTT+TGG 0.334848 3:-35957867 None:intergenic
CTCCCTGTGGTCATAGTCCT+TGG 0.337045 3:-35956679 None:intergenic
GATTCTTCAGTTGCTGGTCT+TGG 0.351386 3:+35959722 MsG0380013368.01.T01:CDS
GGAGGAACCGGTCCTTCAAC+TGG 0.357117 3:-35958416 None:intergenic
GCTGTGGATTCTTCAGTTGC+TGG 0.359338 3:+35959716 MsG0380013368.01.T01:CDS
ATCTCACTTGGTGACACAAT+TGG 0.361351 3:+35958491 MsG0380013368.01.T01:CDS
TTTACGAAACCCTAGAAATT+GGG 0.363277 3:-35955267 None:intergenic
GAGAAGCTTGCATTTGCTAT+TGG 0.363951 3:-35960132 None:intergenic
TCTCACTTGGTGACACAATT+GGG 0.372918 3:+35958492 MsG0380013368.01.T01:CDS
TATACCTGTGGGACCCATTT+GGG 0.388962 3:-35957166 None:intergenic
TAACAAAGACATGCAAGATA+TGG 0.395825 3:+35956774 MsG0380013368.01.T01:CDS
CGTCCACAAGTAGATAATTT+GGG 0.396400 3:+35956352 MsG0380013368.01.T01:CDS
CATCAGCAGTGACTCGGTTA+AGG 0.398712 3:-35959916 None:intergenic
GTCCACTTCCATGACACATA+TGG 0.406780 3:+35959137 MsG0380013368.01.T01:CDS
CTGGCAATCTGATGCCTCTC+AGG 0.410598 3:-35957615 None:intergenic
ATTCATAGACTAGCATCTAC+TGG 0.414544 3:+35957109 MsG0380013368.01.T01:CDS
TGGAGGGAGACAAGAATGTT+TGG 0.416982 3:-35959170 None:intergenic
ATATACCTGTGGGACCCATT+TGG 0.423740 3:-35957167 None:intergenic
CAAAATGCATACCCTCGAAC+TGG 0.425699 3:-35957884 None:intergenic
AATTCAATCTTTACATCTGT+TGG 0.426921 3:-35957085 None:intergenic
TGAAGAAAACGTTGAGGGAT+AGG 0.427797 3:-35955293 None:intergenic
CGACTTCATCGGCAAGCAGT+TGG 0.429165 3:+35959862 MsG0380013368.01.T01:CDS
TGTACCTCAGATTACCAGTA+TGG 0.432763 3:+35956739 MsG0380013368.01.T01:CDS
ATATAGATGTTATCATATCT+TGG 0.438779 3:-35959942 None:intergenic
TCTTCAGTTGCTGGTCTTGG+TGG 0.441483 3:+35959725 MsG0380013368.01.T01:CDS
ACAAGTAGATAATTTGGGTA+TGG 0.441687 3:+35956357 MsG0380013368.01.T01:CDS
GGTGGCTGTCCATATGCTAA+GGG 0.446426 3:+35959743 MsG0380013368.01.T01:CDS
TGGTGGCTGTCCATATGCTA+AGG 0.451026 3:+35959742 MsG0380013368.01.T01:CDS
TCCACTCACGTTGATGAGTT+AGG 0.454117 3:+35960087 MsG0380013368.01.T01:three_prime_UTR
ATCAGCAGTGACTCGGTTAA+GGG 0.471542 3:-35959915 None:intergenic
TTTGAAGGTATTCTGTAAAG+TGG 0.472562 3:+35960302 MsG0380013368.01.T01:three_prime_UTR
ATGGGAAACTGCTTTATTGA+AGG 0.479991 3:+35956376 MsG0380013368.01.T01:CDS
GCCATTACAGCCAAAAGCAT+TGG 0.482879 3:-35959089 None:intergenic
TTTGTTAAGATAGTTGAAGT+TGG 0.487269 3:+35957025 MsG0380013368.01.T01:CDS
TTTAAATTAGGAGTCAGAAC+TGG 0.489900 3:-35957634 None:intergenic
TCCACTTCCATGACACATAT+GGG 0.494495 3:+35959138 MsG0380013368.01.T01:CDS
GCTAAAGCACTATATGATAT+GGG 0.494567 3:+35958458 MsG0380013368.01.T01:CDS
ATGATGTATAGTTAGCTATA+CGG 0.495826 3:+35960208 MsG0380013368.01.T01:three_prime_UTR
GAAGAAAACGTTGAGGGATA+GGG 0.496510 3:-35955292 None:intergenic
GAGCTCTCAATTCCAGTTCG+AGG 0.500214 3:+35957872 MsG0380013368.01.T01:CDS
TCATGCTTGGCAGCTTGTCA+TGG 0.500596 3:-35956288 None:intergenic
CAAGTAGATAATTTGGGTAT+GGG 0.504928 3:+35956358 MsG0380013368.01.T01:CDS
AGAGTTCAGAGGTTCTCATC+TGG 0.505085 3:+35956322 MsG0380013368.01.T01:CDS
CAGAAACATACCCTTGGAAA+AGG 0.505637 3:+35956620 MsG0380013368.01.T01:CDS
CTGTCCATGGTACTCATGCT+TGG 0.511059 3:-35956301 None:intergenic
ACTTCATCGGCAAGCAGTTG+GGG 0.512566 3:+35959864 MsG0380013368.01.T01:CDS
ATCCAGGTGATTCAACCAAT+GGG 0.512862 3:+35959997 MsG0380013368.01.T01:three_prime_UTR
ACAATTGGGGTAGGCACACC+AGG 0.520924 3:+35958506 MsG0380013368.01.T01:CDS
ATCCCATTGGTTGAATCACC+TGG 0.521698 3:-35959999 None:intergenic
GTCTCCCAAATGGGTCCCAC+AGG 0.524840 3:+35957162 MsG0380013368.01.T01:CDS
TATCCAGGTGATTCAACCAA+TGG 0.525894 3:+35959996 MsG0380013368.01.T01:three_prime_UTR
TCAACTATCTTAACAAACTC+AGG 0.528412 3:-35957019 None:intergenic
CTTCACCATGTCAAGTTTGG+AGG 0.529375 3:+35956255 MsG0380013368.01.T01:exon
AGCCAAAAGCATTGGAACTA+CGG 0.530502 3:-35959081 None:intergenic
GGCAGCTTGTCATGGCCAAG+TGG 0.534171 3:-35956280 None:intergenic
GCCCATATGTGTCATGGAAG+TGG 0.539936 3:-35959139 None:intergenic
TGGATGCCCAGTTGAAGGAC+CGG 0.541275 3:+35958409 MsG0380013368.01.T01:CDS
ATTGGAAAGCTCATGCAAGC+TGG 0.545049 3:+35959839 MsG0380013368.01.T01:CDS
ATGCAAGCTGGCGACTTCAT+CGG 0.545221 3:+35959851 MsG0380013368.01.T01:CDS
AGAATTGAAGAAAACGTTGA+GGG 0.546967 3:-35955298 None:intergenic
GGGAGACAAGAATGTTTGGA+AGG 0.547452 3:-35959166 None:intergenic
GATGTTGTGTACATGCTGAA+TGG 0.548740 3:+35959791 MsG0380013368.01.T01:CDS
ACGAGTGACAGCTCGATAGC+GGG 0.549034 3:-35957840 None:intergenic
GTTGTTGGATGCCCAGTTGA+AGG 0.549854 3:+35958404 MsG0380013368.01.T01:CDS
TTACGAAACCCTAGAAATTG+GGG 0.550632 3:-35955266 None:intergenic
GTTGAAGTTGGACCAAGGGA+TGG 0.550966 3:+35957037 MsG0380013368.01.T01:CDS
TATTTGTTAACTTACTTGGA+GGG 0.551242 3:-35959186 None:intergenic
ATACCCAAATTATCTACTTG+TGG 0.551302 3:-35956355 None:intergenic
GTGTACATGCTGAATGGACT+TGG 0.556574 3:+35959797 MsG0380013368.01.T01:CDS
TTCATAGACTAGCATCTACT+GGG 0.564553 3:+35957110 MsG0380013368.01.T01:CDS
AGTGACTCGGTTAAGGGCAA+TGG 0.564612 3:-35959909 None:intergenic
TACTGGGTTATCTGTCATTG+AGG 0.564876 3:+35957126 MsG0380013368.01.T01:CDS
TCAAGTTTGGAGGAGCCACT+TGG 0.565206 3:+35956265 MsG0380013368.01.T01:CDS
GGGATTGCCCATATGTGTCA+TGG 0.578354 3:-35959145 None:intergenic
ATGGCAGTCTTTGAGCCAGA+GGG 0.579520 3:-35959890 None:intergenic
GGTTGTTTCGAAATCTCACT+TGG 0.579694 3:+35958479 MsG0380013368.01.T01:CDS
GAGCTTTCCAATATCAACGT+TGG 0.580121 3:-35959828 None:intergenic
GATAGTTGAAGTTGGACCAA+GGG 0.581744 3:+35957033 MsG0380013368.01.T01:CDS
TGGACTGAAAGAGTCACCTC+GGG 0.587158 3:-35956659 None:intergenic
CATATAGAATGATATCCCAT+TGG 0.589144 3:-35960012 None:intergenic
TCCTAACTCATCAACGTGAG+TGG 0.593347 3:-35960088 None:intergenic
AGCTCTCAATTCCAGTTCGA+GGG 0.594177 3:+35957873 MsG0380013368.01.T01:CDS
TGGGCAATGCAGTTTATGAA+AGG 0.595135 3:+35956992 MsG0380013368.01.T01:CDS
GGAGACAAGAATGTTTGGAA+GGG 0.595834 3:-35959165 None:intergenic
AAGAATTGAAGAAAACGTTG+AGG 0.595942 3:-35955299 None:intergenic
GTGGCTGTCCATATGCTAAG+GGG 0.598484 3:+35959744 MsG0380013368.01.T01:CDS
ACACAGCAGAAACATACCCT+TGG 0.600138 3:+35956614 MsG0380013368.01.T01:CDS
TGGAAGCATCAGCAGTGACT+CGG 0.600270 3:-35959922 None:intergenic
CCAAATTATCTACTTGTGGA+CGG 0.600561 3:-35956351 None:intergenic
CACGAGTGACAGCTCGATAG+CGG 0.601591 3:-35957841 None:intergenic
TTTCATCGTGTTTCTCCCTG+TGG 0.602715 3:-35956692 None:intergenic
CCAAACTTGACATGGTGAAG+TGG 0.606059 3:-35956252 None:intergenic
TGGCTCCTCCAAACTTGACA+TGG 0.606063 3:-35956260 None:intergenic
AATGGCAGTCTTTGAGCCAG+AGG 0.609686 3:-35959891 None:intergenic
TGGCTGTCCATATGCTAAGG+GGG 0.610224 3:+35959745 MsG0380013368.01.T01:CDS
ACAGAATACCTTCAAAATGG+AGG 0.613881 3:-35960295 None:intergenic
GAGGAACCGGTCCTTCAACT+GGG 0.613982 3:-35958415 None:intergenic
AGTCCAAGGACTATGACCAC+AGG 0.615138 3:+35956676 MsG0380013368.01.T01:CDS
AGGTATGTATCATGCGTTGT+TGG 0.615911 3:+35958389 MsG0380013368.01.T01:intron
CTTGGTGACACAATTGGGGT+AGG 0.625438 3:+35958497 MsG0380013368.01.T01:CDS
GAGGTGACTCTTTCAGTCCA+AGG 0.626999 3:+35956662 MsG0380013368.01.T01:CDS
GGCATCAGGAAATGTAGCGA+CGG 0.627133 3:+35959766 MsG0380013368.01.T01:CDS
ATAGATGGGAATAAGTGCTG+TGG 0.633320 3:+35959700 MsG0380013368.01.T01:intron
AGATAGTTGAAGTTGGACCA+AGG 0.636448 3:+35957032 MsG0380013368.01.T01:CDS
GAACCTCTGAACTCTGTCCA+TGG 0.637112 3:-35956314 None:intergenic
ATACACAACTTAGTGCATGA+TGG 0.641557 3:-35960187 None:intergenic
TTGGACTGAAAGAGTCACCT+CGG 0.641749 3:-35956660 None:intergenic
CTCACTTGGTGACACAATTG+GGG 0.642342 3:+35958493 MsG0380013368.01.T01:CDS
TTGACCATACTGGTAATCTG+AGG 0.644486 3:-35956743 None:intergenic
TACGAAACCCTAGAAATTGG+GGG 0.648510 3:-35955265 None:intergenic
TGGCAGTCTTTGAGCCAGAG+GGG 0.660951 3:-35959889 None:intergenic
GCTGCCAAGCATGAGTACCA+TGG 0.664679 3:+35956297 MsG0380013368.01.T01:CDS
GTCCAAGGACTATGACCACA+GGG 0.671076 3:+35956677 MsG0380013368.01.T01:CDS
TGGTAATCTGAGGTACAAAG+TGG 0.671809 3:-35956733 None:intergenic
CAAGCAGTTCATAACCTGAG+AGG 0.688642 3:+35957601 MsG0380013368.01.T01:CDS
GTACCATGGACAGAGTTCAG+AGG 0.731970 3:+35956311 MsG0380013368.01.T01:CDS
CAAACAAGAGACATGTCCCG+AGG 0.735346 3:+35956643 MsG0380013368.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATAACATTATTTATATAT+TGG - Chr3:35955416-35955435 None:intergenic 10.0%
!! TCTATTAAATTATAATTCTT+TGG + Chr3:35956851-35956870 MsG0380013368.01.T01:intron 10.0%
!!! AAAATGATTTTTTATCATTA+TGG - Chr3:35957298-35957317 None:intergenic 10.0%
!!! AAATGATTTTTTATCATTAT+GGG - Chr3:35957297-35957316 None:intergenic 10.0%
!!! ACTTTCTTTTTTTAATTTTT+AGG + Chr3:35958543-35958562 MsG0380013368.01.T01:intron 10.0%
!!! ATCTATATTTTACATTTATA+GGG + Chr3:35957710-35957729 MsG0380013368.01.T01:intron 10.0%
!!! TTTCATTTATTTTTGTTTAT+TGG + Chr3:35959218-35959237 MsG0380013368.01.T01:intron 10.0%
!!! TTTTTCATATATTTTTTAAC+TGG - Chr3:35958635-35958654 None:intergenic 10.0%
!! AAGTTAAATAAATATGACAA+AGG - Chr3:35957202-35957221 None:intergenic 15.0%
!! CAAAAATAAATGAAAAATTC+AGG - Chr3:35959213-35959232 None:intergenic 15.0%
!! GAAAATTAAAAGAAAAACTT+GGG + Chr3:35958758-35958777 MsG0380013368.01.T01:intron 15.0%
!! TGAAAATTAAAAGAAAAACT+TGG + Chr3:35958757-35958776 MsG0380013368.01.T01:intron 15.0%
!!! AGATACTTAAATTTTTTAAC+TGG + Chr3:35956972-35956991 MsG0380013368.01.T01:CDS 15.0%
!!! CATCTATATTTTACATTTAT+AGG + Chr3:35957709-35957728 MsG0380013368.01.T01:intron 15.0%
!!! GATACTTAAATTTTTTAACT+GGG + Chr3:35956973-35956992 MsG0380013368.01.T01:CDS 15.0%
!!! TAAATTTTTATCTTTTTGCT+AGG + Chr3:35960332-35960351 MsG0380013368.01.T01:three_prime_UTR 15.0%
!!! TACATTTTTTTGAAGTATAT+CGG + Chr3:35955579-35955598 MsG0380013368.01.T01:intron 15.0%
!!! TCTATATTTTACATTTATAG+GGG + Chr3:35957711-35957730 MsG0380013368.01.T01:intron 15.0%
!!! TGTTGATATTGTAAATTTTA+TGG + Chr3:35958308-35958327 MsG0380013368.01.T01:intron 15.0%
!!! TTATTATTTTAATTGTGATC+AGG + Chr3:35959056-35959075 MsG0380013368.01.T01:intron 15.0%
!! AAAAATGTAATTCATTCCTT+TGG - Chr3:35955568-35955587 None:intergenic 20.0%
!! AATTGAAAACAGAAATCAAA+GGG + Chr3:35958880-35958899 MsG0380013368.01.T01:intron 20.0%
!! AATTTACAATATCAACACAA+AGG - Chr3:35958305-35958324 None:intergenic 20.0%
!! ATATAGATGTTATCATATCT+TGG - Chr3:35959945-35959964 None:intergenic 20.0%
!! ATATATAATTGGCAGATAAT+AGG - Chr3:35956545-35956564 None:intergenic 20.0%
!! ATCCTATAGAAAATATCAAA+TGG - Chr3:35958015-35958034 None:intergenic 20.0%
!! ATTTAATTACTCTTCTATGA+TGG + Chr3:35955822-35955841 MsG0380013368.01.T01:intron 20.0%
!! ATTTACAATATCAACACAAA+GGG - Chr3:35958304-35958323 None:intergenic 20.0%
!! CAATTACTTGTATAGAAAAA+TGG - Chr3:35958865-35958884 None:intergenic 20.0%
!! GAATTATAATATATACCTGT+GGG - Chr3:35957180-35957199 None:intergenic 20.0%
!! GATTGAGTTTAAAAAATATG+TGG - Chr3:35958239-35958258 None:intergenic 20.0%
!! TAAGTATTTCATAGAATTTG+AGG - Chr3:35958155-35958174 None:intergenic 20.0%
!! TAATTGAAAACAGAAATCAA+AGG + Chr3:35958879-35958898 MsG0380013368.01.T01:intron 20.0%
!! TAGCATAAAAATATATATCC+AGG + Chr3:35959981-35960000 MsG0380013368.01.T01:three_prime_UTR 20.0%
!! TATCAAACAACTATGATTAA+TGG + Chr3:35959315-35959334 MsG0380013368.01.T01:intron 20.0%
!! TCCTATAGAAAATATCAAAT+GGG - Chr3:35958014-35958033 None:intergenic 20.0%
!! TTAAGTCTGAAAATATGAAA+TGG - Chr3:35958822-35958841 None:intergenic 20.0%
!! TTATCTGCCAATTATATATA+TGG + Chr3:35956546-35956565 MsG0380013368.01.T01:intron 20.0%
!! TTGTATGCATATAAATAGAT+GGG + Chr3:35959686-35959705 MsG0380013368.01.T01:intron 20.0%
!! TTTGTATGCATATAAATAGA+TGG + Chr3:35959685-35959704 MsG0380013368.01.T01:intron 20.0%
!!! CATATTTTTTAAACTCAATC+AGG + Chr3:35958239-35958258 MsG0380013368.01.T01:intron 20.0%
!!! GGATCATATATTTTTTAGAA+TGG + Chr3:35959578-35959597 MsG0380013368.01.T01:intron 20.0%
!!! TCATATATTTTTTAGAATGG+AGG + Chr3:35959581-35959600 MsG0380013368.01.T01:intron 20.0%
!!! TCTAGTTGTATCTTTTATAA+TGG - Chr3:35957473-35957492 None:intergenic 20.0%
!!! TTTCTTTTAATTTTCACTGT+TGG - Chr3:35958753-35958772 None:intergenic 20.0%
! AAATCTAAATCCAAGGTATA+CGG - Chr3:35959364-35959383 None:intergenic 25.0%
! AAGTTCATCTAACATTGAAT+TGG + Chr3:35958095-35958114 MsG0380013368.01.T01:intron 25.0%
! AAGTTTAAATTCATTGCAGT+TGG + Chr3:35956913-35956932 MsG0380013368.01.T01:intron 25.0%
! AATATGCATTATATGCTTTG+GGG - Chr3:35955646-35955665 None:intergenic 25.0%
! AATTCAATCTTTACATCTGT+TGG - Chr3:35957088-35957107 None:intergenic 25.0%
! ACACATTACATATATAGAAG+AGG - Chr3:35959268-35959287 None:intergenic 25.0%
! ACTTGCAAGTTATATTAAAG+TGG - Chr3:35957944-35957963 None:intergenic 25.0%
! ATCAGTGCTGTATTTAAATT+TGG + Chr3:35958365-35958384 MsG0380013368.01.T01:intron 25.0%
! ATGATGTATAGTTAGCTATA+CGG + Chr3:35960208-35960227 MsG0380013368.01.T01:three_prime_UTR 25.0%
! ATTAAAGTGGTGATATTTGA+TGG - Chr3:35957931-35957950 None:intergenic 25.0%
! CAATATGCATTATATGCTTT+GGG - Chr3:35955647-35955666 None:intergenic 25.0%
! CCTATAGAAAATATCAAATG+GGG - Chr3:35958013-35958032 None:intergenic 25.0%
! CTTCAAATTACAGCAAAATA+AGG - Chr3:35955369-35955388 None:intergenic 25.0%
! GATATTATGAATGATTGTTG+TGG + Chr3:35957228-35957247 MsG0380013368.01.T01:intron 25.0%
! GGAATTATAATATATACCTG+TGG - Chr3:35957181-35957200 None:intergenic 25.0%
! GGTTATGCCATATATATAAT+TGG - Chr3:35956556-35956575 None:intergenic 25.0%
! GTCAAAAAAGTTTATGCATT+TGG + Chr3:35955695-35955714 MsG0380013368.01.T01:intron 25.0%
! TAATAAGTGCCTATTCTATA+TGG - Chr3:35956115-35956134 None:intergenic 25.0%
! TAGATTTCACCATATAGAAT+AGG + Chr3:35956103-35956122 MsG0380013368.01.T01:intron 25.0%
! TCAAACATTTAATTGAGACT+AGG + Chr3:35958953-35958972 MsG0380013368.01.T01:intron 25.0%
! TCAATATGCATTATATGCTT+TGG - Chr3:35955648-35955667 None:intergenic 25.0%
! TCTCAAATATAAGCAAAAGT+TGG - Chr3:35955750-35955769 None:intergenic 25.0%
! TTAAAGTGGTGATATTTGAT+GGG - Chr3:35957930-35957949 None:intergenic 25.0%
! TTTACAGAATACCTTCAAAA+TGG - Chr3:35960301-35960320 None:intergenic 25.0%
! TTTGTTAAGATAGTTGAAGT+TGG + Chr3:35957025-35957044 MsG0380013368.01.T01:CDS 25.0%
!! ACAGTACAATGTAGTTTTTA+TGG + Chr3:35955620-35955639 MsG0380013368.01.T01:intron 25.0%
!! ATTATTTACCTCCATTTTGA+AGG + Chr3:35960287-35960306 MsG0380013368.01.T01:three_prime_UTR 25.0%
!! GTCTAATTTTCATTCGTTTA+AGG + Chr3:35955323-35955342 MsG0380013368.01.T01:five_prime_UTR 25.0%
!! GTGATTTTGTCATATTTCTT+TGG + Chr3:35956935-35956954 MsG0380013368.01.T01:intron 25.0%
!! TTGATAGTTCGTTCATTAAT+TGG - Chr3:35959301-35959320 None:intergenic 25.0%
!! TTTGATTTATGTCTTTCAGT+TGG + Chr3:35957558-35957577 MsG0380013368.01.T01:intron 25.0%
!! TTTTGTTCTTCTTCTATAAC+TGG - Chr3:35960065-35960084 None:intergenic 25.0%
!!! AATTTAAATACAGCACTGAT+TGG - Chr3:35958365-35958384 None:intergenic 25.0%
!!! ATTGTTGTTTTGAGATGATT+TGG + Chr3:35958201-35958220 MsG0380013368.01.T01:intron 25.0%
!!! CTTATTTTGCTGTAATTTGA+AGG + Chr3:35955367-35955386 MsG0380013368.01.T01:intron 25.0%
!!! GACTAGTTTTTGCTTATATT+TGG - Chr3:35955678-35955697 None:intergenic 25.0%
!!! TTTTAGGTTAAAATCGTACT+TGG + Chr3:35958559-35958578 MsG0380013368.01.T01:intron 25.0%
!!! TTTTTGCTTATATTTGGAAC+CGG - Chr3:35955672-35955691 None:intergenic 25.0%
AAATCAAATGACATTGAAGC+AGG - Chr3:35957546-35957565 None:intergenic 30.0%
AAATTGGGGGAATTTGAATA+TGG - Chr3:35955255-35955274 None:intergenic 30.0%
AAGAATTGAAGAAAACGTTG+AGG - Chr3:35955302-35955321 None:intergenic 30.0%
AATATAGATGAGACATCTGA+AGG - Chr3:35957699-35957718 None:intergenic 30.0%
AATTGAGACTAGGAAGAATT+GGG + Chr3:35958963-35958982 MsG0380013368.01.T01:intron 30.0%
ACAAGTAGATAATTTGGGTA+TGG + Chr3:35956357-35956376 MsG0380013368.01.T01:CDS 30.0%
ACAGTGGAAATAATTGGTTA+AGG - Chr3:35957510-35957529 None:intergenic 30.0%
AGAATTGAAGAAAACGTTGA+GGG - Chr3:35955301-35955320 None:intergenic 30.0%
ATACCCAAATTATCTACTTG+TGG - Chr3:35956358-35956377 None:intergenic 30.0%
ATATAGATGAGACATCTGAA+GGG - Chr3:35957698-35957717 None:intergenic 30.0%
ATCAAAACCAACGTTGATAT+TGG + Chr3:35959821-35959840 MsG0380013368.01.T01:CDS 30.0%
ATGATTTCTAACATTTCACC+AGG - Chr3:35956167-35956186 None:intergenic 30.0%
CAAGTAGATAATTTGGGTAT+GGG + Chr3:35956358-35956377 MsG0380013368.01.T01:CDS 30.0%
CACATTACAGTGGAAATAAT+TGG - Chr3:35957516-35957535 None:intergenic 30.0%
CAGAAATCAAAGGGAAAATA+AGG + Chr3:35958889-35958908 MsG0380013368.01.T01:intron 30.0%
CATATAGAATGATATCCCAT+TGG - Chr3:35960015-35960034 None:intergenic 30.0%
CTAAATACAACTACAAGCAA+AGG - Chr3:35956086-35956105 None:intergenic 30.0%
GATAGTTGCACCTTTAAATT+AGG - Chr3:35957649-35957668 None:intergenic 30.0%
GCATATAATGCATATTGATC+CGG + Chr3:35955650-35955669 MsG0380013368.01.T01:intron 30.0%
GTATACCATAGTGTAATTGT+GGG - Chr3:35958704-35958723 None:intergenic 30.0%
GTCATATTTCTTTGGTTAGT+TGG + Chr3:35956943-35956962 MsG0380013368.01.T01:intron 30.0%
GTGCTGTATTTAAATTTGGT+AGG + Chr3:35958369-35958388 MsG0380013368.01.T01:intron 30.0%
GTTGAGCACAAATAAAAAGT+GGG - Chr3:35957366-35957385 None:intergenic 30.0%
TAACAAAGACATGCAAGATA+TGG + Chr3:35956774-35956793 MsG0380013368.01.T01:CDS 30.0%
TAATTGAGACTAGGAAGAAT+TGG + Chr3:35958962-35958981 MsG0380013368.01.T01:intron 30.0%
TACTCTTCTATGATGGTTAA+TGG + Chr3:35955829-35955848 MsG0380013368.01.T01:intron 30.0%
TCAACTATCTTAACAAACTC+AGG - Chr3:35957022-35957041 None:intergenic 30.0%
TCATCTCAAAACAACAATAC+AGG - Chr3:35958199-35958218 None:intergenic 30.0%
TCTTTGACATGTTAAACCAA+AGG + Chr3:35955549-35955568 MsG0380013368.01.T01:intron 30.0%
TGATTCGTTTGATCTTAATC+AGG - Chr3:35959437-35959456 None:intergenic 30.0%
TGTTGAGCACAAATAAAAAG+TGG - Chr3:35957367-35957386 None:intergenic 30.0%
TTGAGCACAAATAAAAAGTG+GGG - Chr3:35957365-35957384 None:intergenic 30.0%
TTTAAATTAGGAGTCAGAAC+TGG - Chr3:35957637-35957656 None:intergenic 30.0%
TTTACGAAACCCTAGAAATT+GGG - Chr3:35955270-35955289 None:intergenic 30.0%
! AGCTAAAGCACTATATGATA+TGG + Chr3:35958457-35958476 MsG0380013368.01.T01:CDS 30.0%
! AGTTCTGACTCCTAATTTAA+AGG + Chr3:35957636-35957655 MsG0380013368.01.T01:CDS 30.0%
! AGTTTTGCTCTGCATTTAAT+TGG + Chr3:35956014-35956033 MsG0380013368.01.T01:intron 30.0%
! CAATTGTGATTAGTTGAATG+AGG + Chr3:35955509-35955528 MsG0380013368.01.T01:intron 30.0%
! CAGTTATTAATGGACATTCT+TGG + Chr3:35959662-35959681 MsG0380013368.01.T01:intron 30.0%
! CATAGAATTTGAGGTCTTAT+GGG - Chr3:35958146-35958165 None:intergenic 30.0%
! CCCCATTTGATATTTTCTAT+AGG + Chr3:35958010-35958029 MsG0380013368.01.T01:intron 30.0%
! GCTAAAGCACTATATGATAT+GGG + Chr3:35958458-35958477 MsG0380013368.01.T01:CDS 30.0%
! GTTTTGCTCTGCATTTAATT+GGG + Chr3:35956015-35956034 MsG0380013368.01.T01:intron 30.0%
! TCAGAAAGAGCATGTATATT+CGG - Chr3:35959032-35959051 None:intergenic 30.0%
! TCATAGAATTTGAGGTCTTA+TGG - Chr3:35958147-35958166 None:intergenic 30.0%
! TTGGTAGTCTCAGTTATTAA+TGG + Chr3:35959652-35959671 MsG0380013368.01.T01:intron 30.0%
! TTTTACGAAACCCTAGAAAT+TGG - Chr3:35955271-35955290 None:intergenic 30.0%
! TTTTGCTCTGCATTTAATTG+GGG + Chr3:35956016-35956035 MsG0380013368.01.T01:intron 30.0%
!! CTTTTGCTTATATTTGAGAC+CGG + Chr3:35955751-35955770 MsG0380013368.01.T01:intron 30.0%
!! TTTGAAGGTATTCTGTAAAG+TGG + Chr3:35960302-35960321 MsG0380013368.01.T01:three_prime_UTR 30.0%
AAGTCATCTAACTCATTACC+TGG - Chr3:35958527-35958546 None:intergenic 35.0%
ACAGAATACCTTCAAAATGG+AGG - Chr3:35960298-35960317 None:intergenic 35.0%
AGGTAAATCTCACATTACAG+TGG - Chr3:35957526-35957545 None:intergenic 35.0%
ATACACAACTTAGTGCATGA+TGG - Chr3:35960190-35960209 None:intergenic 35.0%
ATAGGTCAGTAATACATGAC+AGG - Chr3:35956527-35956546 None:intergenic 35.0%
ATGAGTCATCCTATCTTGAT+TGG + Chr3:35959499-35959518 MsG0380013368.01.T01:intron 35.0%
ATGGCATATAAGGTATGCAA+TGG + Chr3:35956793-35956812 MsG0380013368.01.T01:intron 35.0%
ATTCATAGACTAGCATCTAC+TGG + Chr3:35957109-35957128 MsG0380013368.01.T01:CDS 35.0%
ATTGAGACTAGGAAGAATTG+GGG + Chr3:35958964-35958983 MsG0380013368.01.T01:intron 35.0%
CAAATATAGAGAAGGATGCA+GGG - Chr3:35958050-35958069 None:intergenic 35.0%
CAGGGGTTAATGTAAAGTAA+AGG - Chr3:35956508-35956527 None:intergenic 35.0%
CATGCAAGATATGGCATATA+AGG + Chr3:35956783-35956802 MsG0380013368.01.T01:CDS 35.0%
CATGTATATTCGGGATTAAG+AGG - Chr3:35959022-35959041 None:intergenic 35.0%
CCAAATTATCTACTTGTGGA+CGG - Chr3:35956354-35956373 None:intergenic 35.0%
CGTCCACAAGTAGATAATTT+GGG + Chr3:35956352-35956371 MsG0380013368.01.T01:CDS 35.0%
CTGCAGAAAATCTAAATCCA+AGG - Chr3:35959371-35959390 None:intergenic 35.0%
CTTCTATGATGGTTAATGGA+AGG + Chr3:35955833-35955852 MsG0380013368.01.T01:intron 35.0%
GAGTATTAAAATGCAGCCTT+GGG + Chr3:35955915-35955934 MsG0380013368.01.T01:intron 35.0%
GCTGTAATTTGAAGGCAATT+TGG + Chr3:35955375-35955394 MsG0380013368.01.T01:intron 35.0%
GGTATACCATAGTGTAATTG+TGG - Chr3:35958705-35958724 None:intergenic 35.0%
GTAATTTGAAGGCAATTTGG+TGG + Chr3:35955378-35955397 MsG0380013368.01.T01:intron 35.0%
GTATATATTTCCCTACAACC+TGG + Chr3:35956146-35956165 MsG0380013368.01.T01:intron 35.0%
TAACATTTCACCAGGTTGTA+GGG - Chr3:35956159-35956178 None:intergenic 35.0%
TAGGTCAGTAATACATGACA+GGG - Chr3:35956526-35956545 None:intergenic 35.0%
TCAAATTCCCCCAATTTCTA+GGG + Chr3:35955258-35955277 MsG0380013368.01.T01:five_prime_UTR 35.0%
TCAATGAATACCGTATACCT+TGG + Chr3:35959351-35959370 MsG0380013368.01.T01:intron 35.0%
TGAGCACAAATAAAAAGTGG+GGG - Chr3:35957364-35957383 None:intergenic 35.0%
TGGGATAGCATTAGGAATAA+TGG - Chr3:35958127-35958146 None:intergenic 35.0%
TGTAACTGTTAAGACCTTGA+CGG - Chr3:35958270-35958289 None:intergenic 35.0%
TTACGAAACCCTAGAAATTG+GGG - Chr3:35955269-35955288 None:intergenic 35.0%
TTCAAATTCCCCCAATTTCT+AGG + Chr3:35955257-35955276 MsG0380013368.01.T01:five_prime_UTR 35.0%
TTCATAGACTAGCATCTACT+GGG + Chr3:35957110-35957129 MsG0380013368.01.T01:CDS 35.0%
! AACCAGGTTTAACTTTAAGC+TGG + Chr3:35959613-35959632 MsG0380013368.01.T01:intron 35.0%
! ACCAGGTTTAACTTTAAGCT+GGG + Chr3:35959614-35959633 MsG0380013368.01.T01:intron 35.0%
! AGAGTATTAAAATGCAGCCT+TGG + Chr3:35955914-35955933 MsG0380013368.01.T01:intron 35.0%
! ATAACTTGCAAGTTGCAAGT+GGG + Chr3:35957951-35957970 MsG0380013368.01.T01:intron 35.0%
! ATGGGAAACTGCTTTATTGA+AGG + Chr3:35956376-35956395 MsG0380013368.01.T01:CDS 35.0%
! CAGAAAGAGCATGTATATTC+GGG - Chr3:35959031-35959050 None:intergenic 35.0%
! GGATTTAGATTTTCTGCAGT+TGG + Chr3:35959372-35959391 MsG0380013368.01.T01:intron 35.0%
! GTTCGGATTGAATGATTTTG+AGG - Chr3:35957404-35957423 None:intergenic 35.0%
! TATAACTTGCAAGTTGCAAG+TGG + Chr3:35957950-35957969 MsG0380013368.01.T01:intron 35.0%
! TCATTTTGTAATCCATCCCT+TGG - Chr3:35957052-35957071 None:intergenic 35.0%
! TGGGTCTGCATTTTATGATT+TGG + Chr3:35959633-35959652 MsG0380013368.01.T01:intron 35.0%
! TTGATGGGTGCTTAGAATAA+TGG - Chr3:35957915-35957934 None:intergenic 35.0%
!!! ACATAAGCTACTTTTGATGG+AGG - Chr3:35958437-35958456 None:intergenic 35.0%
!!! CTTAGGATTTTCTAGCTGTA+AGG + Chr3:35959550-35959569 MsG0380013368.01.T01:intron 35.0%
!!! GCTACATAAGCTACTTTTGA+TGG - Chr3:35958440-35958459 None:intergenic 35.0%
!!! TAGTTTTGTGTCTCCCAAAT+GGG + Chr3:35957153-35957172 MsG0380013368.01.T01:CDS 35.0%
!!! TTTTCTAGCTGTAAGGAATC+TGG + Chr3:35959557-35959576 MsG0380013368.01.T01:intron 35.0%
AACTGGAATTGAGAGCTCTT+TGG - Chr3:35957870-35957889 None:intergenic 40.0%
AACTGTGCACTAAATGCGTA+AGG - Chr3:35957430-35957449 None:intergenic 40.0%
ACCCAGCTTAAAGTTAAACC+TGG - Chr3:35959618-35959637 None:intergenic 40.0%
ACTCGGTAAATCACATTCGA+AGG - Chr3:35959474-35959493 None:intergenic 40.0%
AGATAGTTGAAGTTGGACCA+AGG + Chr3:35957032-35957051 MsG0380013368.01.T01:CDS 40.0%
AGGATGACTCATGTTCAACT+CGG - Chr3:35959491-35959510 None:intergenic 40.0%
AGGCACATCTTGTGCTTAAT+TGG - Chr3:35958664-35958683 None:intergenic 40.0%
AGGTATGTATCATGCGTTGT+TGG + Chr3:35958389-35958408 MsG0380013368.01.T01:intron 40.0%
AGGTCAGTAATACATGACAG+GGG - Chr3:35956525-35956544 None:intergenic 40.0%
ATCCAGGTGATTCAACCAAT+GGG + Chr3:35959997-35960016 MsG0380013368.01.T01:three_prime_UTR 40.0%
ATGCAGAGCAAAACTCTGTA+TGG - Chr3:35956009-35956028 None:intergenic 40.0%
CAAGACCCACAATTACACTA+TGG + Chr3:35958696-35958715 MsG0380013368.01.T01:intron 40.0%
CAGAAACATACCCTTGGAAA+AGG + Chr3:35956620-35956639 MsG0380013368.01.T01:CDS 40.0%
CATAGTGTAATTGTGGGTCT+TGG - Chr3:35958698-35958717 None:intergenic 40.0%
CATCTTGTGCTTAATTGGGT+TGG - Chr3:35958659-35958678 None:intergenic 40.0%
CCAAATATAGAGAAGGATGC+AGG - Chr3:35958051-35958070 None:intergenic 40.0%
CCGTCCACAAGTAGATAATT+TGG + Chr3:35956351-35956370 MsG0380013368.01.T01:CDS 40.0%
CCTGCATCCTTCTCTATATT+TGG + Chr3:35958048-35958067 MsG0380013368.01.T01:intron 40.0%
CTAAATGCGTAAGGTCTGTT+CGG - Chr3:35957421-35957440 None:intergenic 40.0%
CTAACATTTCACCAGGTTGT+AGG - Chr3:35956160-35956179 None:intergenic 40.0%
GAAGAAAACGTTGAGGGATA+GGG - Chr3:35955295-35955314 None:intergenic 40.0%
GAGCTTTCCAATATCAACGT+TGG - Chr3:35959831-35959850 None:intergenic 40.0%
GATAGTTGAAGTTGGACCAA+GGG + Chr3:35957033-35957052 MsG0380013368.01.T01:CDS 40.0%
GATGTTGTGTACATGCTGAA+TGG + Chr3:35959791-35959810 MsG0380013368.01.T01:CDS 40.0%
GCATCCTTCTCTATATTTGG+TGG + Chr3:35958051-35958070 MsG0380013368.01.T01:intron 40.0%
GGAGACAAGAATGTTTGGAA+GGG - Chr3:35959168-35959187 None:intergenic 40.0%
GGCACATCTTGTGCTTAATT+GGG - Chr3:35958663-35958682 None:intergenic 40.0%
GGGAGAAACACGATGAAATT+TGG + Chr3:35956697-35956716 MsG0380013368.01.T01:CDS 40.0%
GTATACCCTATACAGAGAGA+CGG + Chr3:35958718-35958737 MsG0380013368.01.T01:intron 40.0%
TACATGACTGTGGCAAACTT+AGG + Chr3:35959533-35959552 MsG0380013368.01.T01:intron 40.0%
TACGAAACCCTAGAAATTGG+GGG - Chr3:35955268-35955287 None:intergenic 40.0%
TACTGGGTTATCTGTCATTG+AGG + Chr3:35957126-35957145 MsG0380013368.01.T01:CDS 40.0%
TATCCAGGTGATTCAACCAA+TGG + Chr3:35959996-35960015 MsG0380013368.01.T01:three_prime_UTR 40.0%
TCCACTTCCATGACACATAT+GGG + Chr3:35959138-35959157 MsG0380013368.01.T01:CDS 40.0%
TCTTCATTGTCTTCACTGCA+CGG - Chr3:35956592-35956611 None:intergenic 40.0%
TGAAGAAAACGTTGAGGGAT+AGG - Chr3:35955296-35955315 None:intergenic 40.0%
TGAGCCACCAAATATAGAGA+AGG - Chr3:35958058-35958077 None:intergenic 40.0%
TGGGCAATGCAGTTTATGAA+AGG + Chr3:35956992-35957011 MsG0380013368.01.T01:CDS 40.0%
TGTACCTCAGATTACCAGTA+TGG + Chr3:35956739-35956758 MsG0380013368.01.T01:CDS 40.0%
TTGACCATACTGGTAATCTG+AGG - Chr3:35956746-35956765 None:intergenic 40.0%
! AGGTCTTATGGGATAGCATT+AGG - Chr3:35958135-35958154 None:intergenic 40.0%
! ATAGATGGGAATAAGTGCTG+TGG + Chr3:35959700-35959719 MsG0380013368.01.T01:intron 40.0%
! ATCTCACTTGGTGACACAAT+TGG + Chr3:35958491-35958510 MsG0380013368.01.T01:CDS 40.0%
! CTGCACGGAATATAGTCTTA+AGG - Chr3:35956577-35956596 None:intergenic 40.0%
! GGTTGTTTCGAAATCTCACT+TGG + Chr3:35958479-35958498 MsG0380013368.01.T01:CDS 40.0%
! TATTGCGCTTTTGACCATAC+TGG - Chr3:35956756-35956775 None:intergenic 40.0%
! TCTCACTTGGTGACACAATT+GGG + Chr3:35958492-35958511 MsG0380013368.01.T01:CDS 40.0%
! TGCTTATATTTGAGACCGGA+AGG + Chr3:35955755-35955774 MsG0380013368.01.T01:intron 40.0%
! TGGTAATCTGAGGTACAAAG+TGG - Chr3:35956736-35956755 None:intergenic 40.0%
!! AGCCAAAAGCATTGGAACTA+CGG - Chr3:35959084-35959103 None:intergenic 40.0%
!! ATGGACTAGCCAACTGAAAT+TGG - Chr3:35955990-35956009 None:intergenic 40.0%
!! ATGGAGGTATCTGTATAACC+AGG + Chr3:35959597-35959616 MsG0380013368.01.T01:intron 40.0%
!! CTCTTGTTTGCCTTTTCCAA+GGG - Chr3:35956633-35956652 None:intergenic 40.0%
!! GAGAAGCTTGCATTTGCTAT+TGG - Chr3:35960135-35960154 None:intergenic 40.0%
!! TCCAATGCTTTTGGCTGTAA+TGG + Chr3:35959088-35959107 MsG0380013368.01.T01:CDS 40.0%
!! TCTCTTGTTTGCCTTTTCCA+AGG - Chr3:35956634-35956653 None:intergenic 40.0%
!!! CTAGTTTTGTGTCTCCCAAA+TGG + Chr3:35957152-35957171 MsG0380013368.01.T01:CDS 40.0%
!!! GTTTTGAGATGATTTGGCAC+TGG + Chr3:35958207-35958226 MsG0380013368.01.T01:intron 40.0%
AAGCTGAGACATACTCCTTC+CGG - Chr3:35955773-35955792 None:intergenic 45.0%
ACACAGCAGAAACATACCCT+TGG + Chr3:35956614-35956633 MsG0380013368.01.T01:CDS 45.0%
ACAGGAACAGATGTTGAGAC+TGG - Chr3:35958181-35958200 None:intergenic 45.0%
AGAGTTCAGAGGTTCTCATC+TGG + Chr3:35956322-35956341 MsG0380013368.01.T01:CDS 45.0%
AGCTCTCAATTCCAGTTCGA+GGG + Chr3:35957873-35957892 MsG0380013368.01.T01:CDS 45.0%
ATATACCTGTGGGACCCATT+TGG - Chr3:35957170-35957189 None:intergenic 45.0%
ATTGGAAAGCTCATGCAAGC+TGG + Chr3:35959839-35959858 MsG0380013368.01.T01:CDS 45.0%
CAAAATGCATACCCTCGAAC+TGG - Chr3:35957887-35957906 None:intergenic 45.0%
CAAGCAGTTCATAACCTGAG+AGG + Chr3:35957601-35957620 MsG0380013368.01.T01:CDS 45.0%
CCAAACTTGACATGGTGAAG+TGG - Chr3:35956255-35956274 None:intergenic 45.0%
CCACTTCACCATGTCAAGTT+TGG + Chr3:35956252-35956271 MsG0380013368.01.T01:exon 45.0%
CTTCACCATGTCAAGTTTGG+AGG + Chr3:35956255-35956274 MsG0380013368.01.T01:exon 45.0%
CTTGGAGTGTACTTCTCTCA+AGG + Chr3:35955940-35955959 MsG0380013368.01.T01:intron 45.0%
GCAGCAGTACTTTCTGTTCA+AGG + Chr3:35956815-35956834 MsG0380013368.01.T01:intron 45.0%
GGGAGACAAGAATGTTTGGA+AGG - Chr3:35959169-35959188 None:intergenic 45.0%
GTCCACTTCCATGACACATA+TGG + Chr3:35959137-35959156 MsG0380013368.01.T01:CDS 45.0%
GTGGATGAGAGAAACAAAGC+TGG - Chr3:35956236-35956255 None:intergenic 45.0%
TAGCCAACTGAAATTGGCAC+CGG - Chr3:35955984-35956003 None:intergenic 45.0%
TATACCTGTGGGACCCATTT+GGG - Chr3:35957169-35957188 None:intergenic 45.0%
TCCTAACTCATCAACGTGAG+TGG - Chr3:35960091-35960110 None:intergenic 45.0%
TCTGGCAGTCCAATCAAGAT+AGG - Chr3:35959511-35959530 None:intergenic 45.0%
TGGAGGGAGACAAGAATGTT+TGG - Chr3:35959173-35959192 None:intergenic 45.0%
TTGCCACAGTCATGTATCTC+TGG - Chr3:35959529-35959548 None:intergenic 45.0%
TTGGACTGAAAGAGTCACCT+CGG - Chr3:35956663-35956682 None:intergenic 45.0%
TTTCATCGTGTTTCTCCCTG+TGG - Chr3:35956695-35956714 None:intergenic 45.0%
! ATCCCATTGGTTGAATCACC+TGG - Chr3:35960002-35960021 None:intergenic 45.0%
! CACCGTAGTTCCAATGCTTT+TGG + Chr3:35959079-35959098 MsG0380013368.01.T01:CDS 45.0%
! CTCACTTGGTGACACAATTG+GGG + Chr3:35958493-35958512 MsG0380013368.01.T01:CDS 45.0%
! CTTGAGAGAAGTACACTCCA+AGG - Chr3:35955942-35955961 None:intergenic 45.0%
! GATTCTTCAGTTGCTGGTCT+TGG + Chr3:35959722-35959741 MsG0380013368.01.T01:CDS 45.0%
! GCCATTACAGCCAAAAGCAT+TGG - Chr3:35959092-35959111 None:intergenic 45.0%
! GGGTCTTGGTTCTTCACTTT+AGG - Chr3:35958684-35958703 None:intergenic 45.0%
! GTGTACATGCTGAATGGACT+TGG + Chr3:35959797-35959816 MsG0380013368.01.T01:CDS 45.0%
! TCCACTCACGTTGATGAGTT+AGG + Chr3:35960087-35960106 MsG0380013368.01.T01:three_prime_UTR 45.0%
! TGCTATGGATGGGCAAGTTT+TGG + Chr3:35955792-35955811 MsG0380013368.01.T01:intron 45.0%
! TGGACAGCAAGCTTTTCTGT+TGG - Chr3:35959122-35959141 None:intergenic 45.0%
!! ATCAGCAGTGACTCGGTTAA+GGG - Chr3:35959918-35959937 None:intergenic 45.0%
!! ATGTCTCAGCTTGCTATGGA+TGG + Chr3:35955781-35955800 MsG0380013368.01.T01:intron 45.0%
!! GAGTATGTCTCAGCTTGCTA+TGG + Chr3:35955777-35955796 MsG0380013368.01.T01:intron 45.0%
!! GATTGGTCTCCTGGATTAGT+CGG + Chr3:35956059-35956078 MsG0380013368.01.T01:intron 45.0%
!! TGTCTCAGCTTGCTATGGAT+GGG + Chr3:35955782-35955801 MsG0380013368.01.T01:intron 45.0%
!!! GCTACTTTTGATGGAGGAAC+CGG - Chr3:35958431-35958450 None:intergenic 45.0%
AAAATGCAGCCTTGGGACCT+TGG + Chr3:35955922-35955941 MsG0380013368.01.T01:intron 50.0%
AAGTACACTCCAAGGTCCCA+AGG - Chr3:35955934-35955953 None:intergenic 50.0%
AATGGCAGTCTTTGAGCCAG+AGG - Chr3:35959894-35959913 None:intergenic 50.0%
ACTTCATCGGCAAGCAGTTG+GGG + Chr3:35959864-35959883 MsG0380013368.01.T01:CDS 50.0%
AGCAAAGGACCGACTAATCC+AGG - Chr3:35956071-35956090 None:intergenic 50.0%
AGCCAACTGAAATTGGCACC+GGG - Chr3:35955983-35956002 None:intergenic 50.0%
AGTCCAAGGACTATGACCAC+AGG + Chr3:35956676-35956695 MsG0380013368.01.T01:CDS 50.0%
ATGCAAGCTGGCGACTTCAT+CGG + Chr3:35959851-35959870 MsG0380013368.01.T01:CDS 50.0%
ATGGCAGTCTTTGAGCCAGA+GGG - Chr3:35959893-35959912 None:intergenic 50.0%
CAAACAAGAGACATGTCCCG+AGG + Chr3:35956643-35956662 MsG0380013368.01.T01:CDS 50.0%
CTGCCAGAGATACATGACTG+TGG + Chr3:35959523-35959542 MsG0380013368.01.T01:intron 50.0%
CTGTCCATGGTACTCATGCT+TGG - Chr3:35956304-35956323 None:intergenic 50.0%
CTTCGCCGTCTCTCTGTATA+GGG - Chr3:35958726-35958745 None:intergenic 50.0%
GAACCTCTGAACTCTGTCCA+TGG - Chr3:35956317-35956336 None:intergenic 50.0%
GACTTCATCGGCAAGCAGTT+GGG + Chr3:35959863-35959882 MsG0380013368.01.T01:CDS 50.0%
GAGCTCTCAATTCCAGTTCG+AGG + Chr3:35957872-35957891 MsG0380013368.01.T01:CDS 50.0%
GAGGTGACTCTTTCAGTCCA+AGG + Chr3:35956662-35956681 MsG0380013368.01.T01:CDS 50.0%
GCCCATATGTGTCATGGAAG+TGG - Chr3:35959142-35959161 None:intergenic 50.0%
GCTGTGGATTCTTCAGTTGC+TGG + Chr3:35959716-35959735 MsG0380013368.01.T01:CDS 50.0%
GGCATCAGGAAATGTAGCGA+CGG + Chr3:35959766-35959785 MsG0380013368.01.T01:CDS 50.0%
GGGATTGCCCATATGTGTCA+TGG - Chr3:35959148-35959167 None:intergenic 50.0%
GGTGGCTGTCCATATGCTAA+GGG + Chr3:35959743-35959762 MsG0380013368.01.T01:CDS 50.0%
GTACCATGGACAGAGTTCAG+AGG + Chr3:35956311-35956330 MsG0380013368.01.T01:CDS 50.0%
GTCCAAGGACTATGACCACA+GGG + Chr3:35956677-35956696 MsG0380013368.01.T01:CDS 50.0%
GTGGCTGTCCATATGCTAAG+GGG + Chr3:35959744-35959763 MsG0380013368.01.T01:CDS 50.0%
GTTGAAGTTGGACCAAGGGA+TGG + Chr3:35957037-35957056 MsG0380013368.01.T01:CDS 50.0%
GTTGTTGGATGCCCAGTTGA+AGG + Chr3:35958404-35958423 MsG0380013368.01.T01:CDS 50.0%
TCAAGTTTGGAGGAGCCACT+TGG + Chr3:35956265-35956284 MsG0380013368.01.T01:CDS 50.0%
TCAATCAGGTCAAGCCGTCA+AGG + Chr3:35958253-35958272 MsG0380013368.01.T01:intron 50.0%
TCATGCTTGGCAGCTTGTCA+TGG - Chr3:35956291-35956310 None:intergenic 50.0%
TCTTCGCCGTCTCTCTGTAT+AGG - Chr3:35958727-35958746 None:intergenic 50.0%
TGGACTGAAAGAGTCACCTC+GGG - Chr3:35956662-35956681 None:intergenic 50.0%
TGGCTCCTCCAAACTTGACA+TGG - Chr3:35956263-35956282 None:intergenic 50.0%
TGGCTGTCCATATGCTAAGG+GGG + Chr3:35959745-35959764 MsG0380013368.01.T01:CDS 50.0%
TGGTGGCTGTCCATATGCTA+AGG + Chr3:35959742-35959761 MsG0380013368.01.T01:CDS 50.0%
! CTTGGTGACACAATTGGGGT+AGG + Chr3:35958497-35958516 MsG0380013368.01.T01:CDS 50.0%
! TTTGAAGCTGCTGTTGCTGC+TGG + Chr3:35957734-35957753 MsG0380013368.01.T01:CDS 50.0%
!! AGTGACTCGGTTAAGGGCAA+TGG - Chr3:35959912-35959931 None:intergenic 50.0%
!! CATCAGCAGTGACTCGGTTA+AGG - Chr3:35959919-35959938 None:intergenic 50.0%
!! TCTTCAGTTGCTGGTCTTGG+TGG + Chr3:35959725-35959744 MsG0380013368.01.T01:CDS 50.0%
!! TGGAAGCATCAGCAGTGACT+CGG - Chr3:35959925-35959944 None:intergenic 50.0%
ACAATTGGGGTAGGCACACC+AGG + Chr3:35958506-35958525 MsG0380013368.01.T01:CDS 55.0%
ACGAGTGACAGCTCGATAGC+GGG - Chr3:35957843-35957862 None:intergenic 55.0%
CACGAGTGACAGCTCGATAG+CGG - Chr3:35957844-35957863 None:intergenic 55.0%
CCTGATGCCCCCTTAGCATA+TGG - Chr3:35959755-35959774 None:intergenic 55.0%
CGACTTCATCGGCAAGCAGT+TGG + Chr3:35959862-35959881 MsG0380013368.01.T01:CDS 55.0%
CTCCCTGTGGTCATAGTCCT+TGG - Chr3:35956682-35956701 None:intergenic 55.0%
CTGGCAATCTGATGCCTCTC+AGG - Chr3:35957618-35957637 None:intergenic 55.0%
GAGGAACCGGTCCTTCAACT+GGG - Chr3:35958418-35958437 None:intergenic 55.0%
GCTGCCAAGCATGAGTACCA+TGG + Chr3:35956297-35956316 MsG0380013368.01.T01:CDS 55.0%
GTCTCAAGTGCGAATCCTCC+CGG + Chr3:35955962-35955981 MsG0380013368.01.T01:intron 55.0%
TGCATGGCTGCGGCAAATTC+AGG - Chr3:35959403-35959422 None:intergenic 55.0%
TGGATGCCCAGTTGAAGGAC+CGG + Chr3:35958409-35958428 MsG0380013368.01.T01:CDS 55.0%
TGGCAGTCTTTGAGCCAGAG+GGG - Chr3:35959892-35959911 None:intergenic 55.0%
! AATCACACCGTCGACTAGCG+GGG - Chr3:35956043-35956062 None:intergenic 55.0%
! CAACTGAAATTGGCACCGGG+AGG - Chr3:35955980-35955999 None:intergenic 55.0%
! CAATCACACCGTCGACTAGC+GGG - Chr3:35956044-35956063 None:intergenic 55.0%
! CCAATCACACCGTCGACTAG+CGG - Chr3:35956045-35956064 None:intergenic 55.0%
! CTCCCGGTGCCAATTTCAGT+TGG + Chr3:35955978-35955997 MsG0380013368.01.T01:intron 55.0%
!! CCATATGCTAAGGGGGCATC+AGG + Chr3:35959752-35959771 MsG0380013368.01.T01:CDS 55.0%
AGCCCTGACATGCATGGCTG+CGG - Chr3:35959413-35959432 None:intergenic 60.0%
CCGCTAGTCGACGGTGTGAT+TGG + Chr3:35956042-35956061 MsG0380013368.01.T01:intron 60.0%
GGAGGAACCGGTCCTTCAAC+TGG - Chr3:35958419-35958438 None:intergenic 60.0%
GGCAGCTTGTCATGGCCAAG+TGG - Chr3:35956283-35956302 None:intergenic 60.0%
GTCTCCCAAATGGGTCCCAC+AGG + Chr3:35957162-35957181 MsG0380013368.01.T01:CDS 60.0%
TCAGGCAGCCCTGACATGCA+TGG - Chr3:35959419-35959438 None:intergenic 60.0%
TGCCGCAGCCATGCATGTCA+GGG + Chr3:35959408-35959427 MsG0380013368.01.T01:intron 60.0%
TTGCCGCAGCCATGCATGTC+AGG + Chr3:35959407-35959426 MsG0380013368.01.T01:intron 60.0%
! ATCACACCGTCGACTAGCGG+GGG - Chr3:35956042-35956061 None:intergenic 60.0%
!! CGACGGTGTGATTGGTCTCC+TGG + Chr3:35956050-35956069 MsG0380013368.01.T01:intron 60.0%
TTGGGGCCCCCGCTAGTCGA+CGG + Chr3:35956033-35956052 MsG0380013368.01.T01:intron 70.0%
! AAGCAGTTGGGGCGCCCCTC+TGG + Chr3:35959875-35959894 MsG0380013368.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 35955206 35960354 35955206 ID=MsG0380013368.01;Name=MsG0380013368.01
Chr3 mRNA 35955206 35960354 35955206 ID=MsG0380013368.01.T01;Parent=MsG0380013368.01;Name=MsG0380013368.01.T01;_AED=0.33;_eAED=0.33;_QI=164|0.87|0.88|1|0.87|0.77|9|402|447
Chr3 exon 35959704 35960354 35959704 ID=MsG0380013368.01.T01:exon:5297;Parent=MsG0380013368.01.T01
Chr3 exon 35959078 35959193 35959078 ID=MsG0380013368.01.T01:exon:5296;Parent=MsG0380013368.01.T01
Chr3 exon 35958391 35958527 35958391 ID=MsG0380013368.01.T01:exon:5295;Parent=MsG0380013368.01.T01
Chr3 exon 35957731 35957894 35957731 ID=MsG0380013368.01.T01:exon:5294;Parent=MsG0380013368.01.T01
Chr3 exon 35957577 35957657 35957577 ID=MsG0380013368.01.T01:exon:5293;Parent=MsG0380013368.01.T01
Chr3 exon 35956962 35957183 35956962 ID=MsG0380013368.01.T01:exon:5292;Parent=MsG0380013368.01.T01
Chr3 exon 35956597 35956804 35956597 ID=MsG0380013368.01.T01:exon:5291;Parent=MsG0380013368.01.T01
Chr3 exon 35956237 35956428 35956237 ID=MsG0380013368.01.T01:exon:5290;Parent=MsG0380013368.01.T01
Chr3 exon 35955206 35955344 35955206 ID=MsG0380013368.01.T01:exon:5289;Parent=MsG0380013368.01.T01
Chr3 five_prime_UTR 35955206 35955344 35955206 ID=MsG0380013368.01.T01:five_prime_utr;Parent=MsG0380013368.01.T01
Chr3 five_prime_UTR 35956237 35956261 35956237 ID=MsG0380013368.01.T01:five_prime_utr;Parent=MsG0380013368.01.T01
Chr3 CDS 35956262 35956428 35956262 ID=MsG0380013368.01.T01:cds;Parent=MsG0380013368.01.T01
Chr3 CDS 35956597 35956804 35956597 ID=MsG0380013368.01.T01:cds;Parent=MsG0380013368.01.T01
Chr3 CDS 35956962 35957183 35956962 ID=MsG0380013368.01.T01:cds;Parent=MsG0380013368.01.T01
Chr3 CDS 35957577 35957657 35957577 ID=MsG0380013368.01.T01:cds;Parent=MsG0380013368.01.T01
Chr3 CDS 35957731 35957894 35957731 ID=MsG0380013368.01.T01:cds;Parent=MsG0380013368.01.T01
Chr3 CDS 35958391 35958527 35958391 ID=MsG0380013368.01.T01:cds;Parent=MsG0380013368.01.T01
Chr3 CDS 35959078 35959193 35959078 ID=MsG0380013368.01.T01:cds;Parent=MsG0380013368.01.T01
Chr3 CDS 35959704 35959952 35959704 ID=MsG0380013368.01.T01:cds;Parent=MsG0380013368.01.T01
Chr3 three_prime_UTR 35959953 35960354 35959953 ID=MsG0380013368.01.T01:three_prime_utr;Parent=MsG0380013368.01.T01
Gene Sequence

>MsG0380013368.01.T01

ATGTCAAGTTTGGAGGAGCCACTTGGCCATGACAAGCTGCCAAGCATGAGTACCATGGACAGAGTTCAGAGGTTCTCATCTGGTTGTTGCCGTCCACAAGTAGATAATTTGGGTATGGGAAACTGCTTTATTGAAGGACGAAGTTGCAGCACATCTAATAGCTGCAATGAAGACAATGAAGATTACACAGCAGAAACATACCCTTGGAAAAGGCAAACAAGAGACATGTCCCGAGGTGACTCTTTCAGTCCAAGGACTATGACCACAGGGAGAAACACGATGAAATTTGGAATCGTTGACAAACCACTTTGTACCTCAGATTACCAGTATGGTCAAAAGCGCAATAACAAAGACATGCAAGATATGGCATATAAGTTGGTATGTGAGATACTTAAATTTTTTAACTGGGCAATGCAGTTTATGAAAGGTATGCCTGAGTTTGTTAAGATAGTTGAAGTTGGACCAAGGGATGGATTACAAAATGAGAAGAACATTGTACCAACAGATGTAAAGATTGAATTGATTCATAGACTAGCATCTACTGGGTTATCTGTCATTGAGGCTACTAGTTTTGTGTCTCCCAAATGGGTCCCACAGTTGGCTGACGCAAAAGATGTGATGCAAGCAGTTCATAACCTGAGAGGCATCAGATTGCCAGTTCTGACTCCTAATTTAAAGGGGTTTGAAGCTGCTGTTGCTGCTGGAGCTAGAGAAGTAGCTGTTTTTGCATCAGCTTCTGAATCTTTCTCAAAATCAAACATTAATTGTAGTATTGAAGAGAGTCTTTCCCGCTATCGAGCTGTCACTCGTGCTGCCAAAGAGCTCTCAATTCCAGTTCGAGGGTATGTATCATGCGTTGTTGGATGCCCAGTTGAAGGACCGGTTCCTCCATCAAAAGTAGCTTATGTAGCTAAAGCACTATATGATATGGGTTGTTTCGAAATCTCACTTGGTGACACAATTGGGGTAGGCACACCAGGCACCGTAGTTCCAATGCTTTTGGCTGTAATGGCTGTTGTTCCAACAGAAAAGCTTGCTGTCCACTTCCATGACACATATGGGCAATCCCTTCCAAACATTCTTGTCTCCCTCCAAATGGGAATAAGTGCTGTGGATTCTTCAGTTGCTGGTCTTGGTGGCTGTCCATATGCTAAGGGGGCATCAGGAAATGTAGCGACGGAAGATGTTGTGTACATGCTGAATGGACTTGGTATCAAAACCAACGTTGATATTGGAAAGCTCATGCAAGCTGGCGACTTCATCGGCAAGCAGTTGGGGCGCCCCTCTGGCTCAAAGACTGCCATTGCCCTTAACCGAGTCACTGCTGATGCTTCCAAGATATGA
Protein sequence

>MsG0380013368.01.T01

MSSLEEPLGHDKLPSMSTMDRVQRFSSGCCRPQVDNLGMGNCFIEGRSCSTSNSCNEDNEDYTAETYPWKRQTRDMSRGDSFSPRTMTTGRNTMKFGIVDKPLCTSDYQYGQKRNNKDMQDMAYKLVCEILKFFNWAMQFMKGMPEFVKIVEVGPRDGLQNEKNIVPTDVKIELIHRLASTGLSVIEATSFVSPKWVPQLADAKDVMQAVHNLRGIRLPVLTPNLKGFEAAVAAGAREVAVFASASESFSKSNINCSIEESLSRYRAVTRAAKELSIPVRGYVSCVVGCPVEGPVPPSKVAYVAKALYDMGCFEISLGDTIGVGTPGTVVPMLLAVMAVVPTEKLAVHFHDTYGQSLPNILVSLQMGISAVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGIKTNVDIGKLMQAGDFIGKQLGRPSGSKTAIALNRVTADASKI*