AlfalfaGEDB | MsG0380013368.01

M. sativa cultivar ZhongmuNo.1 / MsG0380013368.01

KEGG: K01640
GO: GO:0003824 GO:0004419
PFAM: PF00682

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013368.01.T01	XP_003599680.1	94.855	447	9	1	1	447	1	433	0	868

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013368.01.T01	O81027	70.089	448	118	3	1	447	36	468	0	636

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013368.01.T01	G7IZR1	94.855	447	9	1	1	447	1	433	0.0	868

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180002232.01	MsG0380013368.01	0.864280	1.362536e-64	4.254499e-61
MsG0180004969.01	MsG0380013368.01	0.816932	4.286086e-52	3.078443e-49
MsG0280011113.01	MsG0380013368.01	0.837437	5.201367e-57	6.756148e-54
MsG0380013116.01	MsG0380013368.01	0.805453	1.325283e-49	7.014232e-47
MsG0380013368.01	MsG0480018239.01	0.805384	1.369799e-49	7.236828e-47
MsG0380013368.01	MsG0480021102.01	-0.812948	3.278533e-51	2.112682e-48
MsG0380013368.01	MsG0480021180.01	-0.805888	1.074184e-49	5.749112e-47
MsG0380013368.01	MsG0580025052.01	0.831588	1.533198e-55	1.671363e-52
MsG0380013368.01	MsG0680034837.01	0.802932	4.437481e-49	2.201153e-46
MsG0380013368.01	MsG0780036754.01	0.815074	1.113767e-51	7.602373e-49

Showing 1 to 10 of 11 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013368.01.T01	MTR_3g041700	94.855	447	9	1	1	447	1	433	0.0	868
MsG0380013368.01.T01	MTR_3g041700	94.855	447	9	1	1	447	22	454	0.0	866
MsG0380013368.01.T01	MTR_3g041700	93.817	372	9	1	76	447	1	358	0.0	703
MsG0380013368.01.T01	MTR_7g089330	76.129	310	73	1	139	447	3	312	6.33e-172	484
MsG0380013368.01.T01	MTR_7g089330	75.080	313	77	1	136	447	90	402	1.47e-171	487

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013368.01.T01	AT2G26800	70.089	448	118	3	1	447	1	433	0.0	637
MsG0380013368.01.T01	AT2G26800	70.089	448	118	3	1	447	36	468	0.0	636
MsG0380013368.01.T01	AT2G26800	70.089	448	118	3	1	447	36	468	0.0	636
MsG0380013368.01.T01	AT2G26800	69.211	393	106	2	56	447	10	388	0.0	551
MsG0380013368.01.T01	AT2G26800	64.848	330	101	2	1	330	36	350	5.77e-151	433

Showing 1 to 5 of 5 entries

Previous1Next

Find 130 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTGGAATTGAGAGCTCTT+TGG	0.334848	3:-35957867	None:intergenic
AAGAATTGAAGAAAACGTTG+AGG	0.595942	3:-35955299	None:intergenic
AAGCAGTTGGGGCGCCCCTC+TGG	0.273848	3:+35959875	MsG0380013368.01.T01:CDS
AATGGCAGTCTTTGAGCCAG+AGG	0.609686	3:-35959891	None:intergenic
AATTCAATCTTTACATCTGT+TGG	0.426921	3:-35957085	None:intergenic
ACAAGTAGATAATTTGGGTA+TGG	0.441687	3:+35956357	MsG0380013368.01.T01:CDS
ACAATTGGGGTAGGCACACC+AGG	0.520924	3:+35958506	MsG0380013368.01.T01:CDS
ACACAGCAGAAACATACCCT+TGG	0.600138	3:+35956614	MsG0380013368.01.T01:CDS
ACAGAATACCTTCAAAATGG+AGG	0.613881	3:-35960295	None:intergenic
ACGAGTGACAGCTCGATAGC+GGG	0.549034	3:-35957840	None:intergenic

Showing 1 to 10 of 130 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATCAAATGACATTGAAGC+AGG	-	Chr3:35957546-35957565	None:intergenic	30.0%
AAATTGGGGGAATTTGAATA+TGG	-	Chr3:35955255-35955274	None:intergenic	30.0%
AAGAATTGAAGAAAACGTTG+AGG	-	Chr3:35955302-35955321	None:intergenic	30.0%
AATATAGATGAGACATCTGA+AGG	-	Chr3:35957699-35957718	None:intergenic	30.0%
AATTGAGACTAGGAAGAATT+GGG	+	Chr3:35958963-35958982	MsG0380013368.01.T01:intron	30.0%
ACAAGTAGATAATTTGGGTA+TGG	+	Chr3:35956357-35956376	MsG0380013368.01.T01:CDS	30.0%
ACAGTGGAAATAATTGGTTA+AGG	-	Chr3:35957510-35957529	None:intergenic	30.0%
AGAATTGAAGAAAACGTTGA+GGG	-	Chr3:35955301-35955320	None:intergenic	30.0%
ATACCCAAATTATCTACTTG+TGG	-	Chr3:35956358-35956377	None:intergenic	30.0%
ATATAGATGAGACATCTGAA+GGG	-	Chr3:35957698-35957717	None:intergenic	30.0%

Showing 1 to 10 of 354 entries

Previous1 2 3 4 5…36Next

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	35955206	35960354	35955206	ID=MsG0380013368.01;Name=MsG0380013368.01
Chr3	mRNA	35955206	35960354	35955206	ID=MsG0380013368.01.T01;Parent=MsG0380013368.01;Name=MsG0380013368.01.T01;_AED=0.33;_eAED=0.33;_QI=164\|0.87\|0.88\|1\|0.87\|0.77\|9\|402\|447
Chr3	exon	35959704	35960354	35959704	ID=MsG0380013368.01.T01:exon:5297;Parent=MsG0380013368.01.T01
Chr3	exon	35959078	35959193	35959078	ID=MsG0380013368.01.T01:exon:5296;Parent=MsG0380013368.01.T01
Chr3	exon	35958391	35958527	35958391	ID=MsG0380013368.01.T01:exon:5295;Parent=MsG0380013368.01.T01
Chr3	exon	35957731	35957894	35957731	ID=MsG0380013368.01.T01:exon:5294;Parent=MsG0380013368.01.T01
Chr3	exon	35957577	35957657	35957577	ID=MsG0380013368.01.T01:exon:5293;Parent=MsG0380013368.01.T01
Chr3	exon	35956962	35957183	35956962	ID=MsG0380013368.01.T01:exon:5292;Parent=MsG0380013368.01.T01
Chr3	exon	35956597	35956804	35956597	ID=MsG0380013368.01.T01:exon:5291;Parent=MsG0380013368.01.T01
Chr3	exon	35956237	35956428	35956237	ID=MsG0380013368.01.T01:exon:5290;Parent=MsG0380013368.01.T01
Chr3	exon	35955206	35955344	35955206	ID=MsG0380013368.01.T01:exon:5289;Parent=MsG0380013368.01.T01
Chr3	five_prime_UTR	35955206	35955344	35955206	ID=MsG0380013368.01.T01:five_prime_utr;Parent=MsG0380013368.01.T01
Chr3	five_prime_UTR	35956237	35956261	35956237	ID=MsG0380013368.01.T01:five_prime_utr;Parent=MsG0380013368.01.T01
Chr3	CDS	35956262	35956428	35956262	ID=MsG0380013368.01.T01:cds;Parent=MsG0380013368.01.T01
Chr3	CDS	35956597	35956804	35956597	ID=MsG0380013368.01.T01:cds;Parent=MsG0380013368.01.T01
Chr3	CDS	35956962	35957183	35956962	ID=MsG0380013368.01.T01:cds;Parent=MsG0380013368.01.T01
Chr3	CDS	35957577	35957657	35957577	ID=MsG0380013368.01.T01:cds;Parent=MsG0380013368.01.T01
Chr3	CDS	35957731	35957894	35957731	ID=MsG0380013368.01.T01:cds;Parent=MsG0380013368.01.T01
Chr3	CDS	35958391	35958527	35958391	ID=MsG0380013368.01.T01:cds;Parent=MsG0380013368.01.T01
Chr3	CDS	35959078	35959193	35959078	ID=MsG0380013368.01.T01:cds;Parent=MsG0380013368.01.T01
Chr3	CDS	35959704	35959952	35959704	ID=MsG0380013368.01.T01:cds;Parent=MsG0380013368.01.T01
Chr3	three_prime_UTR	35959953	35960354	35959953	ID=MsG0380013368.01.T01:three_prime_utr;Parent=MsG0380013368.01.T01

Gene Sequence

>MsG0380013368.01.T01

ATGTCAAGTTTGGAGGAGCCACTTGGCCATGACAAGCTGCCAAGCATGAGTACCATGGACAGAGTTCAGAGGTTCTCATCTGGTTGTTGCCGTCCACAAGTAGATAATTTGGGTATGGGAAACTGCTTTATTGAAGGACGAAGTTGCAGCACATCTAATAGCTGCAATGAAGACAATGAAGATTACACAGCAGAAACATACCCTTGGAAAAGGCAAACAAGAGACATGTCCCGAGGTGACTCTTTCAGTCCAAGGACTATGACCACAGGGAGAAACACGATGAAATTTGGAATCGTTGACAAACCACTTTGTACCTCAGATTACCAGTATGGTCAAAAGCGCAATAACAAAGACATGCAAGATATGGCATATAAGTTGGTATGTGAGATACTTAAATTTTTTAACTGGGCAATGCAGTTTATGAAAGGTATGCCTGAGTTTGTTAAGATAGTTGAAGTTGGACCAAGGGATGGATTACAAAATGAGAAGAACATTGTACCAACAGATGTAAAGATTGAATTGATTCATAGACTAGCATCTACTGGGTTATCTGTCATTGAGGCTACTAGTTTTGTGTCTCCCAAATGGGTCCCACAGTTGGCTGACGCAAAAGATGTGATGCAAGCAGTTCATAACCTGAGAGGCATCAGATTGCCAGTTCTGACTCCTAATTTAAAGGGGTTTGAAGCTGCTGTTGCTGCTGGAGCTAGAGAAGTAGCTGTTTTTGCATCAGCTTCTGAATCTTTCTCAAAATCAAACATTAATTGTAGTATTGAAGAGAGTCTTTCCCGCTATCGAGCTGTCACTCGTGCTGCCAAAGAGCTCTCAATTCCAGTTCGAGGGTATGTATCATGCGTTGTTGGATGCCCAGTTGAAGGACCGGTTCCTCCATCAAAAGTAGCTTATGTAGCTAAAGCACTATATGATATGGGTTGTTTCGAAATCTCACTTGGTGACACAATTGGGGTAGGCACACCAGGCACCGTAGTTCCAATGCTTTTGGCTGTAATGGCTGTTGTTCCAACAGAAAAGCTTGCTGTCCACTTCCATGACACATATGGGCAATCCCTTCCAAACATTCTTGTCTCCCTCCAAATGGGAATAAGTGCTGTGGATTCTTCAGTTGCTGGTCTTGGTGGCTGTCCATATGCTAAGGGGGCATCAGGAAATGTAGCGACGGAAGATGTTGTGTACATGCTGAATGGACTTGGTATCAAAACCAACGTTGATATTGGAAAGCTCATGCAAGCTGGCGACTTCATCGGCAAGCAGTTGGGGCGCCCCTCTGGCTCAAAGACTGCCATTGCCCTTAACCGAGTCACTGCTGATGCTTCCAAGATATGA

Protein sequence

>MsG0380013368.01.T01

MSSLEEPLGHDKLPSMSTMDRVQRFSSGCCRPQVDNLGMGNCFIEGRSCSTSNSCNEDNEDYTAETYPWKRQTRDMSRGDSFSPRTMTTGRNTMKFGIVDKPLCTSDYQYGQKRNNKDMQDMAYKLVCEILKFFNWAMQFMKGMPEFVKIVEVGPRDGLQNEKNIVPTDVKIELIHRLASTGLSVIEATSFVSPKWVPQLADAKDVMQAVHNLRGIRLPVLTPNLKGFEAAVAAGAREVAVFASASESFSKSNINCSIEESLSRYRAVTRAAKELSIPVRGYVSCVVGCPVEGPVPPSKVAYVAKALYDMGCFEISLGDTIGVGTPGTVVPMLLAVMAVVPTEKLAVHFHDTYGQSLPNILVSLQMGISAVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGIKTNVDIGKLMQAGDFIGKQLGRPSGSKTAIALNRVTADASKI*