Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025985.01.T01 | AES96431.1 | 96.203 | 316 | 8 | 3 | 1 | 314 | 1 | 314 | 0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025985.01.T01 | Q9LVS0 | 52.459 | 183 | 54 | 3 | 3 | 170 | 1 | 165 | 4.13E-55 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025985.01.T01 | G7K6Z9 | 96.203 | 316 | 8 | 3 | 1 | 314 | 1 | 314 | 0.0 | 612 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0580025985.01.T01 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000614.01 | MsG0580025985.01 | -0.814454 | 1.527897e-51 | 1.025660e-48 |
| MsG0180001069.01 | MsG0580025985.01 | 0.829656 | 4.557320e-55 | 4.694229e-52 |
| MsG0180001795.01 | MsG0580025985.01 | -0.814458 | 1.524927e-51 | 1.023780e-48 |
| MsG0180003128.01 | MsG0580025985.01 | -0.817788 | 2.749409e-52 | 2.021634e-49 |
| MsG0180003129.01 | MsG0580025985.01 | -0.808194 | 3.491332e-50 | 1.983563e-47 |
| MsG0180004844.01 | MsG0580025985.01 | 0.821879 | 3.193125e-53 | 2.630432e-50 |
| MsG0380013071.01 | MsG0580025985.01 | -0.830684 | 2.557234e-55 | 2.713773e-52 |
| MsG0480018497.01 | MsG0580025985.01 | 0.857734 | 1.333640e-62 | 3.324405e-59 |
| MsG0480021102.01 | MsG0580025985.01 | -0.850468 | 1.665083e-60 | 3.264766e-57 |
| MsG0480021249.01 | MsG0580025985.01 | -0.842063 | 3.250521e-58 | 4.870487e-55 |
| MsG0480022069.01 | MsG0580025985.01 | 0.827219 | 1.765522e-54 | 1.693594e-51 |
| MsG0580025052.01 | MsG0580025985.01 | 0.845442 | 4.051114e-59 | 6.751750e-56 |
| MsG0580025985.01 | MsG0780040038.01 | -0.826452 | 2.692704e-54 | 2.526272e-51 |
| MsG0580025985.01 | MsG0780040523.01 | 0.813160 | 2.945266e-51 | 1.908759e-48 |
| MsG0580025985.01 | MsG0780041519.01 | -0.819438 | 1.161424e-52 | 8.937357e-50 |
| MsG0580025985.01 | MsG0780041812.01 | 0.808501 | 3.002914e-50 | 1.719849e-47 |
| MsG0380016315.01 | MsG0580025985.01 | 0.850992 | 1.185727e-60 | 2.365364e-57 |
| MsG0280007477.01 | MsG0580025985.01 | 0.801367 | 9.309401e-49 | 4.437979e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025985.01.T01 | MTR_5g037080 | 96.203 | 316 | 8 | 3 | 1 | 314 | 1 | 314 | 0.0 | 612 |
| MsG0580025985.01.T01 | MTR_4g100630 | 48.768 | 203 | 66 | 5 | 3 | 186 | 1 | 184 | 1.59e-55 | 183 |
| MsG0580025985.01.T01 | MTR_2g100930 | 48.780 | 205 | 62 | 5 | 3 | 181 | 1 | 188 | 5.03e-54 | 180 |
| MsG0580025985.01.T01 | MTR_4g107230 | 55.556 | 198 | 57 | 7 | 25 | 207 | 8 | 189 | 2.13e-48 | 164 |
| MsG0580025985.01.T01 | MTR_6g092540 | 48.276 | 174 | 68 | 4 | 3 | 166 | 1 | 162 | 9.62e-47 | 159 |
| MsG0580025985.01.T01 | MTR_8g101650 | 41.951 | 205 | 84 | 6 | 5 | 186 | 4 | 196 | 3.03e-40 | 142 |
| MsG0580025985.01.T01 | MTR_0036s0260 | 82.353 | 68 | 12 | 0 | 101 | 168 | 28 | 95 | 1.90e-34 | 125 |
| MsG0580025985.01.T01 | MTR_3g462790 | 68.966 | 87 | 25 | 1 | 90 | 174 | 134 | 220 | 5.89e-34 | 127 |
| MsG0580025985.01.T01 | MTR_2g090305 | 80.882 | 68 | 13 | 0 | 101 | 168 | 28 | 95 | 1.47e-33 | 122 |
| MsG0580025985.01.T01 | MTR_4g111975 | 72.603 | 73 | 20 | 0 | 95 | 167 | 132 | 204 | 3.85e-33 | 124 |
| MsG0580025985.01.T01 | MTR_5g069710 | 70.513 | 78 | 23 | 0 | 95 | 172 | 126 | 203 | 2.73e-32 | 122 |
| MsG0580025985.01.T01 | MTR_3g104370 | 42.857 | 168 | 83 | 5 | 1 | 165 | 1 | 158 | 1.16e-31 | 118 |
| MsG0580025985.01.T01 | MTR_7g067080 | 67.949 | 78 | 25 | 0 | 95 | 172 | 134 | 211 | 5.12e-31 | 119 |
| MsG0580025985.01.T01 | MTR_1g111830 | 68.421 | 76 | 24 | 0 | 92 | 167 | 115 | 190 | 1.10e-30 | 116 |
| MsG0580025985.01.T01 | MTR_5g081860 | 50.000 | 118 | 54 | 2 | 88 | 203 | 112 | 226 | 1.44e-29 | 114 |
| MsG0580025985.01.T01 | MTR_8g063600 | 60.759 | 79 | 29 | 1 | 90 | 166 | 95 | 173 | 4.64e-25 | 102 |
| MsG0580025985.01.T01 | MTR_4g015130 | 56.923 | 65 | 28 | 0 | 111 | 175 | 3 | 67 | 1.82e-20 | 84.3 |
| MsG0580025985.01.T01 | MTR_5g088010 | 40.385 | 104 | 56 | 2 | 95 | 192 | 54 | 157 | 3.53e-20 | 88.2 |
| MsG0580025985.01.T01 | MTR_1g048660 | 55.224 | 67 | 30 | 0 | 102 | 168 | 13 | 79 | 9.12e-20 | 82.8 |
| MsG0580025985.01.T01 | MTR_5g027570 | 50.617 | 81 | 34 | 2 | 94 | 168 | 81 | 161 | 1.39e-19 | 86.3 |
| MsG0580025985.01.T01 | MTR_8g063870 | 56.061 | 66 | 27 | 1 | 103 | 166 | 94 | 159 | 4.20e-19 | 85.9 |
| MsG0580025985.01.T01 | MTR_5g088060 | 43.750 | 96 | 48 | 2 | 103 | 192 | 274 | 369 | 1.02e-18 | 86.7 |
| MsG0580025985.01.T01 | MTR_5g488160 | 43.750 | 96 | 48 | 2 | 103 | 192 | 274 | 369 | 1.02e-18 | 86.7 |
| MsG0580025985.01.T01 | MTR_1g033620 | 72.549 | 51 | 14 | 0 | 117 | 167 | 21 | 71 | 2.29e-18 | 83.2 |
| MsG0580025985.01.T01 | MTR_5g027550 | 65.455 | 55 | 19 | 0 | 94 | 148 | 70 | 124 | 2.45e-18 | 82.8 |
| MsG0580025985.01.T01 | MTR_5g075760 | 36.220 | 127 | 61 | 4 | 60 | 167 | 47 | 172 | 4.79e-13 | 67.8 |
| MsG0580025985.01.T01 | MTR_1g083180 | 48.571 | 70 | 32 | 2 | 103 | 169 | 63 | 131 | 1.20e-12 | 65.9 |
| MsG0580025985.01.T01 | MTR_5g075790 | 49.254 | 67 | 31 | 2 | 103 | 167 | 115 | 180 | 4.68e-12 | 65.1 |
| MsG0580025985.01.T01 | MTR_3g070110 | 45.833 | 72 | 32 | 1 | 103 | 167 | 97 | 168 | 8.63e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025985.01.T01 | AT1G70000 | 49.074 | 324 | 90 | 11 | 3 | 314 | 1 | 261 | 1.20e-75 | 233 |
| MsG0580025985.01.T01 | AT1G70000 | 49.074 | 324 | 90 | 11 | 3 | 314 | 1 | 261 | 1.20e-75 | 233 |
| MsG0580025985.01.T01 | AT5G47390 | 52.459 | 183 | 54 | 3 | 3 | 170 | 1 | 165 | 4.21e-56 | 186 |
| MsG0580025985.01.T01 | AT5G61620 | 47.222 | 180 | 81 | 6 | 1 | 172 | 6 | 179 | 1.23e-45 | 157 |
| MsG0580025985.01.T01 | AT3G16350 | 42.795 | 229 | 69 | 4 | 3 | 181 | 1 | 217 | 4.45e-44 | 155 |
| MsG0580025985.01.T01 | AT1G74840 | 54.497 | 189 | 53 | 5 | 23 | 195 | 17 | 188 | 1.34e-43 | 150 |
| MsG0580025985.01.T01 | AT1G74840 | 57.225 | 173 | 43 | 4 | 23 | 181 | 17 | 172 | 2.97e-43 | 149 |
| MsG0580025985.01.T01 | AT5G56840 | 48.023 | 177 | 78 | 6 | 3 | 175 | 1 | 167 | 6.81e-43 | 147 |
| MsG0580025985.01.T01 | AT1G19000 | 52.910 | 189 | 50 | 6 | 25 | 191 | 17 | 188 | 3.92e-42 | 147 |
| MsG0580025985.01.T01 | AT1G19000 | 52.910 | 189 | 50 | 6 | 25 | 191 | 17 | 188 | 3.92e-42 | 147 |
| MsG0580025985.01.T01 | AT5G58900 | 64.773 | 88 | 29 | 1 | 91 | 176 | 129 | 216 | 2.34e-33 | 124 |
| MsG0580025985.01.T01 | AT1G49010 | 73.973 | 73 | 19 | 0 | 95 | 167 | 128 | 200 | 4.03e-33 | 124 |
| MsG0580025985.01.T01 | AT5G08520 | 69.863 | 73 | 22 | 0 | 95 | 167 | 112 | 184 | 9.65e-32 | 120 |
| MsG0580025985.01.T01 | AT2G38090 | 69.333 | 75 | 23 | 0 | 96 | 170 | 136 | 210 | 1.03e-31 | 120 |
| MsG0580025985.01.T01 | AT5G04760 | 73.611 | 72 | 19 | 0 | 96 | 167 | 94 | 165 | 2.64e-31 | 117 |
| MsG0580025985.01.T01 | AT5G01200 | 67.123 | 73 | 24 | 0 | 95 | 167 | 140 | 212 | 1.49e-29 | 114 |
| MsG0580025985.01.T01 | AT3G11280 | 60.976 | 82 | 32 | 0 | 90 | 171 | 116 | 197 | 1.57e-28 | 111 |
| MsG0580025985.01.T01 | AT3G11280 | 60.976 | 82 | 32 | 0 | 90 | 171 | 116 | 197 | 1.57e-28 | 111 |
| MsG0580025985.01.T01 | AT5G05790 | 59.756 | 82 | 33 | 0 | 90 | 171 | 120 | 201 | 1.21e-27 | 108 |
| MsG0580025985.01.T01 | AT5G05790 | 59.756 | 82 | 33 | 0 | 90 | 171 | 120 | 201 | 1.21e-27 | 108 |
| MsG0580025985.01.T01 | AT5G23650 | 56.579 | 76 | 33 | 0 | 91 | 166 | 110 | 185 | 5.56e-22 | 94.7 |
| MsG0580025985.01.T01 | AT3G10580 | 57.143 | 70 | 28 | 1 | 97 | 166 | 91 | 158 | 1.49e-21 | 92.0 |
| MsG0580025985.01.T01 | AT3G10580 | 57.143 | 70 | 28 | 1 | 97 | 166 | 91 | 158 | 2.29e-21 | 92.4 |
| MsG0580025985.01.T01 | AT4G09450 | 50.562 | 89 | 40 | 2 | 82 | 166 | 68 | 156 | 3.20e-21 | 90.1 |
| MsG0580025985.01.T01 | AT3G10590 | 48.235 | 85 | 41 | 2 | 88 | 170 | 96 | 179 | 4.55e-19 | 84.3 |
Find 143 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTAATATGATTAAGAATT+TGG | 0.086398 | 5:+28695439 | MsG0580025985.01.T01:three_prime_UTR |
| TCTCTACTTAATTAATTTAT+TGG | 0.135934 | 5:-28695338 | None:intergenic |
| CTCTTGTCCAAACTAATATT+TGG | 0.146286 | 5:-28695714 | None:intergenic |
| GAGAGATGATTTGCGAGATT+TGG | 0.170674 | 5:-28693162 | None:intergenic |
| TTAGATTGAGAAAGATAAAA+TGG | 0.218744 | 5:+28695547 | MsG0580025985.01.T01:three_prime_UTR |
| AGCATTGGTGTTGGCCTAAT+TGG | 0.245624 | 5:-28694992 | None:intergenic |
| GATTCTTGTTTCTATTTGTC+TGG | 0.267237 | 5:+28695608 | MsG0580025985.01.T01:three_prime_UTR |
| GGGTACTCTTGGTCTCTTAT+TGG | 0.284088 | 5:+28695661 | MsG0580025985.01.T01:three_prime_UTR |
| GACGAATGGCTGCTACTTTC+CGG | 0.303324 | 5:-28695136 | None:intergenic |
| ATGAATCATGAGAATGATTA+TGG | 0.312226 | 5:+28695418 | MsG0580025985.01.T01:three_prime_UTR |
| TTAAATTCCAAATATTAGTT+TGG | 0.314506 | 5:+28695707 | MsG0580025985.01.T01:three_prime_UTR |
| ATCTCCGGCGACGGCGGTTC+TGG | 0.314599 | 5:-28693893 | None:intergenic |
| AGAGATGATTTGCGAGATTT+GGG | 0.316990 | 5:-28693161 | None:intergenic |
| CTGACCTCGTTTGCGTTCTC+TGG | 0.320215 | 5:-28693633 | None:intergenic |
| TGGTGGTGGTGGTGTTGGGG+TGG | 0.320284 | 5:-28693478 | None:intergenic |
| GCATATCCATCTTCACATTA+TGG | 0.334586 | 5:+28694890 | MsG0580025985.01.T01:CDS |
| ATTTGCGAGATTTGGGTGAT+AGG | 0.341860 | 5:-28693154 | None:intergenic |
| GATGGAACCTTCAACTATAA+TGG | 0.360343 | 5:+28694811 | MsG0580025985.01.T01:CDS |
| CTAGAAACTTTGTGAAAACT+AGG | 0.361627 | 5:+28693817 | MsG0580025985.01.T01:CDS |
| GGGTGTGACCTTGAAGTGAT+AGG | 0.364190 | 5:+28695633 | MsG0580025985.01.T01:three_prime_UTR |
| AAAGAGTGGCCAAGCCAATT+AGG | 0.366908 | 5:+28694978 | MsG0580025985.01.T01:CDS |
| AGGTGATTAGCCGAATTAAT+TGG | 0.370332 | 5:+28695493 | MsG0580025985.01.T01:three_prime_UTR |
| ATTCTTGTTTCTATTTGTCT+GGG | 0.377604 | 5:+28695609 | MsG0580025985.01.T01:three_prime_UTR |
| CTCATTACCGGCAATGTTAC+CGG | 0.380041 | 5:-28694950 | None:intergenic |
| TCACATTATGGCGGCATCCC+TGG | 0.390624 | 5:+28694902 | MsG0580025985.01.T01:CDS |
| GTTCTTGTTGGGCTTGCAAC+AGG | 0.393335 | 5:+28693767 | MsG0580025985.01.T01:CDS |
| ATTGTTATTGGTGGTGGTGG+TGG | 0.398607 | 5:-28693489 | None:intergenic |
| GAACACAAGTTGTTCTTGTT+GGG | 0.400759 | 5:+28693756 | MsG0580025985.01.T01:CDS |
| TTGTAAATTGAGGTTAAAGT+TGG | 0.402565 | 5:+28695286 | MsG0580025985.01.T01:three_prime_UTR |
| ACTCTTTCAGCACTCATTAC+CGG | 0.403021 | 5:-28694962 | None:intergenic |
| GTTGGGGTGGTTGTTGCCTC+CGG | 0.404221 | 5:-28693465 | None:intergenic |
| GTCATTGAAGCTGCAACCTT+CGG | 0.407621 | 5:+28695093 | MsG0580025985.01.T01:CDS |
| GTGGTTGTTCATATTGAGAA+AGG | 0.407804 | 5:-28693541 | None:intergenic |
| AGGATTGTTATTGGTGGTGG+TGG | 0.412317 | 5:-28693492 | None:intergenic |
| TGTTGCTTGAAAATTTAGTT+TGG | 0.417854 | 5:+28695237 | MsG0580025985.01.T01:exon |
| ATAATATAAGTAGGAGGACT+AGG | 0.428357 | 5:+28695368 | MsG0580025985.01.T01:three_prime_UTR |
| AAAAGGAAGAAGATAATGTT+AGG | 0.428858 | 5:+28695464 | MsG0580025985.01.T01:three_prime_UTR |
| TCATCTTCCATTATAGTTGA+AGG | 0.430302 | 5:-28694818 | None:intergenic |
| TCTTGGTCCGGTAACATTGC+CGG | 0.432456 | 5:+28694943 | MsG0580025985.01.T01:CDS |
| CCCACTGCCCTATCACTTCA+AGG | 0.437629 | 5:-28695641 | None:intergenic |
| AAGATAATGTTAGGTTATGT+AGG | 0.445982 | 5:+28695473 | MsG0580025985.01.T01:three_prime_UTR |
| TAGATTGAGAAAGATAAAAT+GGG | 0.445990 | 5:+28695548 | MsG0580025985.01.T01:three_prime_UTR |
| CACATTATGGCGGCATCCCT+GGG | 0.451781 | 5:+28694903 | MsG0580025985.01.T01:CDS |
| AGAACACAAGTTGTTCTTGT+TGG | 0.452936 | 5:+28693755 | MsG0580025985.01.T01:CDS |
| AACAGGTTGGTAAAGGTGAT+TGG | 0.456244 | 5:+28693784 | MsG0580025985.01.T01:CDS |
| TTGGTCTATTTCTTGCAACT+TGG | 0.457256 | 5:+28695680 | MsG0580025985.01.T01:three_prime_UTR |
| GATGTCATCGGATACATAAC+CGG | 0.460322 | 5:-28693591 | None:intergenic |
| ATGGCTGCAGGGAAGTATAA+TGG | 0.461919 | 5:+28695190 | MsG0580025985.01.T01:CDS |
| TCTAGATCATGTTCCTTACA+TGG | 0.468075 | 5:+28693279 | MsG0580025985.01.T01:five_prime_UTR |
| TGCTGAAATCAATCCATGTA+AGG | 0.468342 | 5:-28693292 | None:intergenic |
| GATACATAACCGGCATCCGC+AGG | 0.478265 | 5:-28693581 | None:intergenic |
| CCCATCGGAAAAGGTGTCCC+AGG | 0.480895 | 5:-28694920 | None:intergenic |
| GAGGATAATATAATATAAGT+AGG | 0.483430 | 5:+28695359 | MsG0580025985.01.T01:three_prime_UTR |
| GAAAGGATTGTTATTGGTGG+TGG | 0.486611 | 5:-28693495 | None:intergenic |
| CAAATATTAGTTTGGACAAG+AGG | 0.487817 | 5:+28695715 | MsG0580025985.01.T01:three_prime_UTR |
| GATGACATCATTCACGCCTC+TGG | 0.491594 | 5:+28693605 | MsG0580025985.01.T01:CDS |
| TGGTTGGTGAAGGTGTTCCT+TGG | 0.492029 | 5:+28693724 | MsG0580025985.01.T01:intron |
| TTCTTGTTTCTATTTGTCTG+GGG | 0.492890 | 5:+28695610 | MsG0580025985.01.T01:three_prime_UTR |
| GGCTTGCAACAGGTTGGTAA+AGG | 0.494742 | 5:+28693777 | MsG0580025985.01.T01:CDS |
| GATAGGGCAGTGGGTACTCT+TGG | 0.496556 | 5:+28695650 | MsG0580025985.01.T01:three_prime_UTR |
| TCTGAAAGGATTGTTATTGG+TGG | 0.500851 | 5:-28693498 | None:intergenic |
| AGATTAGCCATCTTAGAAGA+AGG | 0.500963 | 5:-28695019 | None:intergenic |
| TGGTGTTGGCCTAATTGGCT+TGG | 0.501496 | 5:-28694987 | None:intergenic |
| CGTTGCATGTTCTCGAGTTG+TGG | 0.513462 | 5:-28693394 | None:intergenic |
| TGTGAAGATGGATATGCGGC+GGG | 0.518568 | 5:-28694884 | None:intergenic |
| GGACCAAGACCCATCGGAAA+AGG | 0.520312 | 5:-28694929 | None:intergenic |
| GCTGCCTCCTTCTTCTAAGA+TGG | 0.520621 | 5:+28695012 | MsG0580025985.01.T01:CDS |
| TTGACTTGGTTTGTAAATTG+AGG | 0.520915 | 5:+28695276 | MsG0580025985.01.T01:three_prime_UTR |
| AGAACATGCAACGACGGTGG+TGG | 0.522337 | 5:+28693404 | MsG0580025985.01.T01:CDS |
| TAGCAGCCATTCGTCGTCAT+CGG | 0.522877 | 5:+28695144 | MsG0580025985.01.T01:CDS |
| CTTGTTTCTATTTGTCTGGG+GGG | 0.523667 | 5:+28695612 | MsG0580025985.01.T01:three_prime_UTR |
| GGTGGTAATATCAAAGAGAC+TGG | 0.526759 | 5:-28693916 | None:intergenic |
| TTAGAAGAAGGAGGCAGCAT+TGG | 0.530338 | 5:-28695007 | None:intergenic |
| TCTTGTTTCTATTTGTCTGG+GGG | 0.530513 | 5:+28695611 | MsG0580025985.01.T01:three_prime_UTR |
| GTTGCAGCTTCAATGACAAT+GGG | 0.532409 | 5:-28695087 | None:intergenic |
| TAATATAAGTAGGAGGACTA+GGG | 0.533602 | 5:+28695369 | MsG0580025985.01.T01:three_prime_UTR |
| GATTCCAACCCTGCGGATGC+CGG | 0.536723 | 5:+28693572 | MsG0580025985.01.T01:CDS |
| GGGTTGGAATCTTGTGGAGG+TGG | 0.537810 | 5:-28693560 | None:intergenic |
| TTGTGTTCTTCCTCTGTCCA+AGG | 0.544021 | 5:-28693741 | None:intergenic |
| ATAACCAGAACCGCCGTCGC+CGG | 0.546523 | 5:+28693889 | MsG0580025985.01.T01:CDS |
| ATAACCGGCATCCGCAGGGT+TGG | 0.546589 | 5:-28693576 | None:intergenic |
| GCAGGGAAGTATAATGGTGG+GGG | 0.547007 | 5:+28695196 | MsG0580025985.01.T01:CDS |
| TATCAAAGAGACTGGATCTC+CGG | 0.548838 | 5:-28693908 | None:intergenic |
| CTTTGATATTACCACCGATA+CGG | 0.550867 | 5:+28693923 | MsG0580025985.01.T01:CDS |
| TTGTTCATATTGAGAAAGGT+TGG | 0.551197 | 5:-28693537 | None:intergenic |
| TGATTAGCCGAATTAATTGG+TGG | 0.556070 | 5:+28695496 | MsG0580025985.01.T01:three_prime_UTR |
| GACTGGATCTCCGGCGACGG+CGG | 0.556880 | 5:-28693899 | None:intergenic |
| ATGCCGCCATAATGTGAAGA+TGG | 0.557994 | 5:-28694896 | None:intergenic |
| TTGTTGGGCTTGCAACAGGT+TGG | 0.558381 | 5:+28693771 | MsG0580025985.01.T01:CDS |
| GCTGCAACCTTCGGTTCCAT+CGG | 0.562274 | 5:+28695102 | MsG0580025985.01.T01:CDS |
| TTGAGAAAGATAAAATGGGT+TGG | 0.562383 | 5:+28695552 | MsG0580025985.01.T01:three_prime_UTR |
| ATTATACTTCCCTGCAGCCA+TGG | 0.565515 | 5:-28695188 | None:intergenic |
| TCCGGTGAATGATCTTCCGA+TGG | 0.572768 | 5:-28695118 | None:intergenic |
| GGTTGCAGCTTCAATGACAA+TGG | 0.573363 | 5:-28695088 | None:intergenic |
| AGAGACTGGATCTCCGGCGA+CGG | 0.574235 | 5:-28693902 | None:intergenic |
| GAAGGAGGCAGCATTGGTGT+TGG | 0.579116 | 5:-28695001 | None:intergenic |
| CTGCAGGGAAGTATAATGGT+GGG | 0.579931 | 5:+28695194 | MsG0580025985.01.T01:CDS |
| TGCAGGGAAGTATAATGGTG+GGG | 0.579949 | 5:+28695195 | MsG0580025985.01.T01:CDS |
| TCCGCAGGGTTGGAATCTTG+TGG | 0.584771 | 5:-28693566 | None:intergenic |
| GCATGACTTGCAACCTGAGT+TGG | 0.584887 | 5:-28693843 | None:intergenic |
| TGACAATGGGAAAGGCTCGA+TGG | 0.585447 | 5:-28695074 | None:intergenic |
| TGAAGATGGATATGCGGCGG+GGG | 0.585757 | 5:-28694882 | None:intergenic |
| TGATCTTCCGATGGAACCGA+AGG | 0.587262 | 5:-28695109 | None:intergenic |
| TGCTCACAGTGCGGCAACAA+CGG | 0.587587 | 5:+28693371 | MsG0580025985.01.T01:CDS |
| AACAAATATTACCGTATCGG+TGG | 0.588170 | 5:-28693934 | None:intergenic |
| GGTGTGACCTTGAAGTGATA+GGG | 0.589865 | 5:+28695634 | MsG0580025985.01.T01:three_prime_UTR |
| GATAATATAATATAAGTAGG+AGG | 0.590162 | 5:+28695362 | MsG0580025985.01.T01:three_prime_UTR |
| GAAAACTAGGACACCAACTC+AGG | 0.594289 | 5:+28693830 | MsG0580025985.01.T01:CDS |
| TTGTTTCTATTTGTCTGGGG+GGG | 0.595775 | 5:+28695613 | MsG0580025985.01.T01:three_prime_UTR |
| AGCTTCAATGACAATGGGAA+AGG | 0.596956 | 5:-28695082 | None:intergenic |
| CCTTGAAGTGATAGGGCAGT+GGG | 0.599099 | 5:+28695641 | MsG0580025985.01.T01:three_prime_UTR |
| GACGGCGGTTCTGGTTATGA+CGG | 0.606326 | 5:-28693884 | None:intergenic |
| ATAAGTAGGAGGACTAGGGA+GGG | 0.607813 | 5:+28695373 | MsG0580025985.01.T01:three_prime_UTR |
| ACCTTGAAGTGATAGGGCAG+TGG | 0.609020 | 5:+28695640 | MsG0580025985.01.T01:three_prime_UTR |
| AATAAATTAATTAAGTAGAG+AGG | 0.609464 | 5:+28695340 | MsG0580025985.01.T01:three_prime_UTR |
| GCGTTCTCTGGATCGACCAG+AGG | 0.617091 | 5:-28693621 | None:intergenic |
| ATGAAGCCGATGACGACGAA+TGG | 0.619919 | 5:-28695150 | None:intergenic |
| TGAAGGTGTTCCTTGGACAG+AGG | 0.622183 | 5:+28693731 | MsG0580025985.01.T01:intron |
| GGTTCTGGTTATGACGGCGG+AGG | 0.625551 | 5:-28693878 | None:intergenic |
| ATGTGAAGATGGATATGCGG+CGG | 0.625832 | 5:-28694885 | None:intergenic |
| GGACTAGGGAGGGACTAGAG+AGG | 0.625911 | 5:+28695383 | MsG0580025985.01.T01:three_prime_UTR |
| ATACATAACCGGCATCCGCA+GGG | 0.628032 | 5:-28693580 | None:intergenic |
| TCCATCGGAAGATCATTCAC+CGG | 0.635009 | 5:+28695117 | MsG0580025985.01.T01:CDS |
| GTTACCGGACCAAGACCCAT+CGG | 0.636658 | 5:-28694935 | None:intergenic |
| TTTGGTGTTCGACTCACCGG+AGG | 0.636964 | 5:+28693449 | MsG0580025985.01.T01:CDS |
| TATAAGTAGGAGGACTAGGG+AGG | 0.640458 | 5:+28695372 | MsG0580025985.01.T01:three_prime_UTR |
| AGAGGCGTGAATGATGTCAT+CGG | 0.640691 | 5:-28693603 | None:intergenic |
| CCATCGGAAAAGGTGTCCCA+GGG | 0.645708 | 5:-28694919 | None:intergenic |
| AACTCGAGAACATGCAACGA+CGG | 0.649079 | 5:+28693398 | MsG0580025985.01.T01:CDS |
| GCTGCAGGGAAGTATAATGG+TGG | 0.654189 | 5:+28695193 | MsG0580025985.01.T01:CDS |
| GGTAATGAGTGCTGAAAGAG+TGG | 0.656043 | 5:+28694964 | MsG0580025985.01.T01:CDS |
| GCAGGGTTGGAATCTTGTGG+AGG | 0.660646 | 5:-28693563 | None:intergenic |
| CGATCCAGAGAACGCAAACG+AGG | 0.663587 | 5:+28693629 | MsG0580025985.01.T01:CDS |
| GTTGGTAAAGGTGATTGGAG+AGG | 0.666734 | 5:+28693789 | MsG0580025985.01.T01:CDS |
| TTAGCCATCTTAGAAGAAGG+AGG | 0.666938 | 5:-28695016 | None:intergenic |
| GGCGGTTCTGGTTATGACGG+CGG | 0.677631 | 5:-28693881 | None:intergenic |
| TATCCATCTTCACATTATGG+CGG | 0.696782 | 5:+28694893 | MsG0580025985.01.T01:CDS |
| TCGAGAACATGCAACGACGG+TGG | 0.698362 | 5:+28693401 | MsG0580025985.01.T01:CDS |
| TCAATTTCAGCAAGAAACAG+TGG | 0.701868 | 5:+28694841 | MsG0580025985.01.T01:CDS |
| ATAATGTGAAGATGGATATG+CGG | 0.713042 | 5:-28694888 | None:intergenic |
| TCCACAAGATTCCAACCCTG+CGG | 0.713162 | 5:+28693565 | MsG0580025985.01.T01:CDS |
| GTGAAGATGGATATGCGGCG+GGG | 0.716036 | 5:-28694883 | None:intergenic |
| TCTCGCACGTGCTCACAGTG+CGG | 0.735894 | 5:+28693362 | MsG0580025985.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATACGAAATATATTTA+AGG | - | Chr5:28694063-28694082 | None:intergenic | 10.0% |
| !! | GAAATTGTTAAAAATATAAA+AGG | - | Chr5:28693987-28694006 | None:intergenic | 10.0% |
| !! | TAAAATCAAATTATTAGAAA+AGG | - | Chr5:28694009-28694028 | None:intergenic | 10.0% |
| !!! | TATATTAATGTTTTTTGTTT+TGG | + | Chr5:28693704-28693723 | MsG0580025985.01.T01:intron | 10.0% |
| !!! | TTATGCTTTTTTTAATTTAA+TGG | + | Chr5:28695747-28695766 | MsG0580025985.01.T01:three_prime_UTR | 10.0% |
| !! | AATAAATTAATTAAGTAGAG+AGG | + | Chr5:28695340-28695359 | MsG0580025985.01.T01:three_prime_UTR | 15.0% |
| !! | TAATATATCATGATTACAAT+TGG | - | Chr5:28694344-28694363 | None:intergenic | 15.0% |
| !! | TCTCTACTTAATTAATTTAT+TGG | - | Chr5:28695341-28695360 | None:intergenic | 15.0% |
| !! | TTAAATTCCAAATATTAGTT+TGG | + | Chr5:28695707-28695726 | MsG0580025985.01.T01:three_prime_UTR | 15.0% |
| !!! | ATATTCTATTCTATTTTGTA+TGG | + | Chr5:28695576-28695595 | MsG0580025985.01.T01:three_prime_UTR | 15.0% |
| !!! | GTTTTCTATTTTTTTTTCTT+GGG | - | Chr5:28695319-28695338 | None:intergenic | 15.0% |
| !! | AAAAACAAATATTACCGTAT+CGG | - | Chr5:28693940-28693959 | None:intergenic | 20.0% |
| !! | GAGGATAATATAATATAAGT+AGG | + | Chr5:28695359-28695378 | MsG0580025985.01.T01:three_prime_UTR | 20.0% |
| !! | GATAATATAATATAAGTAGG+AGG | + | Chr5:28695362-28695381 | MsG0580025985.01.T01:three_prime_UTR | 20.0% |
| !! | GGTTAATATGATTAAGAATT+TGG | + | Chr5:28695439-28695458 | MsG0580025985.01.T01:three_prime_UTR | 20.0% |
| !! | TAGATTGAGAAAGATAAAAT+GGG | + | Chr5:28695548-28695567 | MsG0580025985.01.T01:three_prime_UTR | 20.0% |
| !! | TGATTAAGAATTTGGAAAAA+AGG | + | Chr5:28695447-28695466 | MsG0580025985.01.T01:three_prime_UTR | 20.0% |
| !! | TTAGATTGAGAAAGATAAAA+TGG | + | Chr5:28695547-28695566 | MsG0580025985.01.T01:three_prime_UTR | 20.0% |
| !!! | GGTTTTCTATTTTTTTTTCT+TGG | - | Chr5:28695320-28695339 | None:intergenic | 20.0% |
| !!! | TTAATGTTTTTTGTTTTGGT+TGG | + | Chr5:28693708-28693727 | MsG0580025985.01.T01:intron | 20.0% |
| ! | AAAAGGAAGAAGATAATGTT+AGG | + | Chr5:28695464-28695483 | MsG0580025985.01.T01:three_prime_UTR | 25.0% |
| ! | AAGATAATGTTAGGTTATGT+AGG | + | Chr5:28695473-28695492 | MsG0580025985.01.T01:three_prime_UTR | 25.0% |
| ! | ATGAATCATGAGAATGATTA+TGG | + | Chr5:28695418-28695437 | MsG0580025985.01.T01:three_prime_UTR | 25.0% |
| ! | ATGAGCTTATGTTAATTGAT+AGG | - | Chr5:28694602-28694621 | None:intergenic | 25.0% |
| ! | CACCTAAAATAAATAATCCA+AGG | - | Chr5:28694792-28694811 | None:intergenic | 25.0% |
| ! | TATCAATTAACATAAGCTCA+TGG | + | Chr5:28694601-28694620 | MsG0580025985.01.T01:intron | 25.0% |
| ! | TTGTAAATTGAGGTTAAAGT+TGG | + | Chr5:28695286-28695305 | MsG0580025985.01.T01:three_prime_UTR | 25.0% |
| !! | CTATTTCGTTTTACTATAAG+AGG | + | Chr5:28694566-28694585 | MsG0580025985.01.T01:intron | 25.0% |
| !! | TCATTAATGTAATTTTGCCT+TGG | + | Chr5:28694772-28694791 | MsG0580025985.01.T01:intron | 25.0% |
| !! | TGTTGCTTGAAAATTTAGTT+TGG | + | Chr5:28695237-28695256 | MsG0580025985.01.T01:exon | 25.0% |
| !!! | ATTCTTGTTTCTATTTGTCT+GGG | + | Chr5:28695609-28695628 | MsG0580025985.01.T01:three_prime_UTR | 25.0% |
| !!! | GAAAAAAGCATCATGATTTT+TGG | + | Chr5:28693431-28693450 | MsG0580025985.01.T01:CDS | 25.0% |
| !!! | GGATTATTTATTTTAGGTGA+TGG | + | Chr5:28694793-28694812 | MsG0580025985.01.T01:intron | 25.0% |
| !!! | TGCCTTGGATTATTTATTTT+AGG | + | Chr5:28694787-28694806 | MsG0580025985.01.T01:intron | 25.0% |
| !!! | TTTTCTGAAAGGATTGTTAT+TGG | - | Chr5:28693504-28693523 | None:intergenic | 25.0% |
| ATAATATAAGTAGGAGGACT+AGG | + | Chr5:28695368-28695387 | MsG0580025985.01.T01:three_prime_UTR | 30.0% | |
| ATAATGTGAAGATGGATATG+CGG | - | Chr5:28694891-28694910 | None:intergenic | 30.0% | |
| ATGTCCGGAGATAATATATT+TGG | - | Chr5:28694661-28694680 | None:intergenic | 30.0% | |
| CCAAAAACCACCAATTAATT+CGG | - | Chr5:28695506-28695525 | None:intergenic | 30.0% | |
| CTAGAAACTTTGTGAAAACT+AGG | + | Chr5:28693817-28693836 | MsG0580025985.01.T01:CDS | 30.0% | |
| CTCTTGTCCAAACTAATATT+TGG | - | Chr5:28695717-28695736 | None:intergenic | 30.0% | |
| GATGTGAAAAAAAGAGAGAA+GGG | - | Chr5:28693237-28693256 | None:intergenic | 30.0% | |
| TAATATAAGTAGGAGGACTA+GGG | + | Chr5:28695369-28695388 | MsG0580025985.01.T01:three_prime_UTR | 30.0% | |
| TCATCTTCCATTATAGTTGA+AGG | - | Chr5:28694821-28694840 | None:intergenic | 30.0% | |
| TGATGTGAAAAAAAGAGAGA+AGG | - | Chr5:28693238-28693257 | None:intergenic | 30.0% | |
| TGTCCGGAGATAATATATTT+GGG | - | Chr5:28694660-28694679 | None:intergenic | 30.0% | |
| TTGAGAAAGATAAAATGGGT+TGG | + | Chr5:28695552-28695571 | MsG0580025985.01.T01:three_prime_UTR | 30.0% | |
| TTGTTCATATTGAGAAAGGT+TGG | - | Chr5:28693540-28693559 | None:intergenic | 30.0% | |
| ! | ATTCTATTTTGTATGGCTGT+TGG | + | Chr5:28695583-28695602 | MsG0580025985.01.T01:three_prime_UTR | 30.0% |
| ! | CAAATATTAGTTTGGACAAG+AGG | + | Chr5:28695715-28695734 | MsG0580025985.01.T01:three_prime_UTR | 30.0% |
| ! | TTCTATTTTGTATGGCTGTT+GGG | + | Chr5:28695584-28695603 | MsG0580025985.01.T01:three_prime_UTR | 30.0% |
| !! | GATTCTTGTTTCTATTTGTC+TGG | + | Chr5:28695608-28695627 | MsG0580025985.01.T01:three_prime_UTR | 30.0% |
| !! | TTCTTGTTTCTATTTGTCTG+GGG | + | Chr5:28695610-28695629 | MsG0580025985.01.T01:three_prime_UTR | 30.0% |
| !! | TTGACTTGGTTTGTAAATTG+AGG | + | Chr5:28695276-28695295 | MsG0580025985.01.T01:three_prime_UTR | 30.0% |
| !!! | AAGTTTTTTCTTGGTTGACT+TGG | + | Chr5:28695262-28695281 | MsG0580025985.01.T01:three_prime_UTR | 30.0% |
| !!! | AGTTTGGTCAAGTTTTTTCT+TGG | + | Chr5:28695253-28695272 | MsG0580025985.01.T01:three_prime_UTR | 30.0% |
| !!! | TTTTTTGTTTTGGTTGGTGA+AGG | + | Chr5:28693714-28693733 | MsG0580025985.01.T01:intron | 30.0% |
| AACAAATATTACCGTATCGG+TGG | - | Chr5:28693937-28693956 | None:intergenic | 35.0% | |
| AGAACACAAGTTGTTCTTGT+TGG | + | Chr5:28693755-28693774 | MsG0580025985.01.T01:CDS | 35.0% | |
| CGGAGATAATATATTTGGGA+CGG | - | Chr5:28694656-28694675 | None:intergenic | 35.0% | |
| CGTCCCAAATATATTATCTC+CGG | + | Chr5:28694654-28694673 | MsG0580025985.01.T01:intron | 35.0% | |
| CGTTCGCAAAAATATATGTC+CGG | - | Chr5:28694676-28694695 | None:intergenic | 35.0% | |
| CTTTGATATTACCACCGATA+CGG | + | Chr5:28693923-28693942 | MsG0580025985.01.T01:CDS | 35.0% | |
| GAACACAAGTTGTTCTTGTT+GGG | + | Chr5:28693756-28693775 | MsG0580025985.01.T01:CDS | 35.0% | |
| GATGGAACCTTCAACTATAA+TGG | + | Chr5:28694811-28694830 | MsG0580025985.01.T01:CDS | 35.0% | |
| GCATATCCATCTTCACATTA+TGG | + | Chr5:28694890-28694909 | MsG0580025985.01.T01:CDS | 35.0% | |
| GTGGTTGTTCATATTGAGAA+AGG | - | Chr5:28693544-28693563 | None:intergenic | 35.0% | |
| TATCCATCTTCACATTATGG+CGG | + | Chr5:28694893-28694912 | MsG0580025985.01.T01:CDS | 35.0% | |
| TCAATTTCAGCAAGAAACAG+TGG | + | Chr5:28694841-28694860 | MsG0580025985.01.T01:CDS | 35.0% | |
| TCTAGATCATGTTCCTTACA+TGG | + | Chr5:28693279-28693298 | MsG0580025985.01.T01:five_prime_UTR | 35.0% | |
| TGCTGAAATCAATCCATGTA+AGG | - | Chr5:28693295-28693314 | None:intergenic | 35.0% | |
| ! | AGAGATGATTTGCGAGATTT+GGG | - | Chr5:28693164-28693183 | None:intergenic | 35.0% |
| ! | AGATAATATATTTGGGACGG+AGG | - | Chr5:28694653-28694672 | None:intergenic | 35.0% |
| ! | AGATTAGCCATCTTAGAAGA+AGG | - | Chr5:28695022-28695041 | None:intergenic | 35.0% |
| ! | AGGTGATTAGCCGAATTAAT+TGG | + | Chr5:28695493-28695512 | MsG0580025985.01.T01:three_prime_UTR | 35.0% |
| ! | GATAATATATTTGGGACGGA+GGG | - | Chr5:28694652-28694671 | None:intergenic | 35.0% |
| ! | TCTATTTTGTATGGCTGTTG+GGG | + | Chr5:28695585-28695604 | MsG0580025985.01.T01:three_prime_UTR | 35.0% |
| ! | TCTGAAAGGATTGTTATTGG+TGG | - | Chr5:28693501-28693520 | None:intergenic | 35.0% |
| ! | TGATTAGCCGAATTAATTGG+TGG | + | Chr5:28695496-28695515 | MsG0580025985.01.T01:three_prime_UTR | 35.0% |
| ! | TTGGTCTATTTCTTGCAACT+TGG | + | Chr5:28695680-28695699 | MsG0580025985.01.T01:three_prime_UTR | 35.0% |
| !! | CCGAATTAATTGGTGGTTTT+TGG | + | Chr5:28695503-28695522 | MsG0580025985.01.T01:three_prime_UTR | 35.0% |
| !! | TCTTGTTTCTATTTGTCTGG+GGG | + | Chr5:28695611-28695630 | MsG0580025985.01.T01:three_prime_UTR | 35.0% |
| !! | TTTTGGTGTACATGTTTGGA+TGG | + | Chr5:28695520-28695539 | MsG0580025985.01.T01:three_prime_UTR | 35.0% |
| !!! | ATCATCGCCTTTTAAAACCA+TGG | + | Chr5:28695171-28695190 | MsG0580025985.01.T01:CDS | 35.0% |
| !!! | ATGCTAGCACTTTTTCTGAA+AGG | - | Chr5:28693515-28693534 | None:intergenic | 35.0% |
| !!! | TGGTTTTTGGTGTACATGTT+TGG | + | Chr5:28695516-28695535 | MsG0580025985.01.T01:three_prime_UTR | 35.0% |
| ACTCTTTCAGCACTCATTAC+CGG | - | Chr5:28694965-28694984 | None:intergenic | 40.0% | |
| AGCTTCAATGACAATGGGAA+AGG | - | Chr5:28695085-28695104 | None:intergenic | 40.0% | |
| GATGTCATCGGATACATAAC+CGG | - | Chr5:28693594-28693613 | None:intergenic | 40.0% | |
| GGTGGTAATATCAAAGAGAC+TGG | - | Chr5:28693919-28693938 | None:intergenic | 40.0% | |
| GTGAAAAAAAGAGAGAAGGG+TGG | - | Chr5:28693234-28693253 | None:intergenic | 40.0% | |
| GTTGCAGCTTCAATGACAAT+GGG | - | Chr5:28695090-28695109 | None:intergenic | 40.0% | |
| TATCAAAGAGACTGGATCTC+CGG | - | Chr5:28693911-28693930 | None:intergenic | 40.0% | |
| TTAGCCATCTTAGAAGAAGG+AGG | - | Chr5:28695019-28695038 | None:intergenic | 40.0% | |
| ! | CTATTTTGTATGGCTGTTGG+GGG | + | Chr5:28695586-28695605 | MsG0580025985.01.T01:three_prime_UTR | 40.0% |
| ! | GAAAGGATTGTTATTGGTGG+TGG | - | Chr5:28693498-28693517 | None:intergenic | 40.0% |
| ! | GAGAGATGATTTGCGAGATT+TGG | - | Chr5:28693165-28693184 | None:intergenic | 40.0% |
| !! | AACAGGTTGGTAAAGGTGAT+TGG | + | Chr5:28693784-28693803 | MsG0580025985.01.T01:CDS | 40.0% |
| !! | CTTGTTTCTATTTGTCTGGG+GGG | + | Chr5:28695612-28695631 | MsG0580025985.01.T01:three_prime_UTR | 40.0% |
| !! | TTGTTTCTATTTGTCTGGGG+GGG | + | Chr5:28695613-28695632 | MsG0580025985.01.T01:three_prime_UTR | 40.0% |
| !!! | ATTTTTGGTGTTCGACTCAC+CGG | + | Chr5:28693446-28693465 | MsG0580025985.01.T01:CDS | 40.0% |
| !!! | CTTTTAAAACCATGGCTGCA+GGG | + | Chr5:28695179-28695198 | MsG0580025985.01.T01:CDS | 40.0% |
| AAAGAGTGGCCAAGCCAATT+AGG | + | Chr5:28694978-28694997 | MsG0580025985.01.T01:CDS | 45.0% | |
| AACTCGAGAACATGCAACGA+CGG | + | Chr5:28693398-28693417 | MsG0580025985.01.T01:CDS | 45.0% | |
| ATAAGTAGGAGGACTAGGGA+GGG | + | Chr5:28695373-28695392 | MsG0580025985.01.T01:three_prime_UTR | 45.0% | |
| ATGCCGCCATAATGTGAAGA+TGG | - | Chr5:28694899-28694918 | None:intergenic | 45.0% | |
| ATGTGAAGATGGATATGCGG+CGG | - | Chr5:28694888-28694907 | None:intergenic | 45.0% | |
| ATTATACTTCCCTGCAGCCA+TGG | - | Chr5:28695191-28695210 | None:intergenic | 45.0% | |
| CTCATTACCGGCAATGTTAC+CGG | - | Chr5:28694953-28694972 | None:intergenic | 45.0% | |
| GAAAACTAGGACACCAACTC+AGG | + | Chr5:28693830-28693849 | MsG0580025985.01.T01:CDS | 45.0% | |
| GGGTACTCTTGGTCTCTTAT+TGG | + | Chr5:28695661-28695680 | MsG0580025985.01.T01:three_prime_UTR | 45.0% | |
| GGTGTGACCTTGAAGTGATA+GGG | + | Chr5:28695634-28695653 | MsG0580025985.01.T01:three_prime_UTR | 45.0% | |
| GGTTGCAGCTTCAATGACAA+TGG | - | Chr5:28695091-28695110 | None:intergenic | 45.0% | |
| GTCATTGAAGCTGCAACCTT+CGG | + | Chr5:28695093-28695112 | MsG0580025985.01.T01:CDS | 45.0% | |
| TATAAGTAGGAGGACTAGGG+AGG | + | Chr5:28695372-28695391 | MsG0580025985.01.T01:three_prime_UTR | 45.0% | |
| TCCATCGGAAGATCATTCAC+CGG | + | Chr5:28695117-28695136 | MsG0580025985.01.T01:CDS | 45.0% | |
| TTAGAAGAAGGAGGCAGCAT+TGG | - | Chr5:28695010-28695029 | None:intergenic | 45.0% | |
| TTGTGTTCTTCCTCTGTCCA+AGG | - | Chr5:28693744-28693763 | None:intergenic | 45.0% | |
| ! | AGAGGCGTGAATGATGTCAT+CGG | - | Chr5:28693606-28693625 | None:intergenic | 45.0% |
| ! | ATGGCTGCAGGGAAGTATAA+TGG | + | Chr5:28695190-28695209 | MsG0580025985.01.T01:CDS | 45.0% |
| ! | CTGCAGGGAAGTATAATGGT+GGG | + | Chr5:28695194-28695213 | MsG0580025985.01.T01:CDS | 45.0% |
| ! | GTTGGTAAAGGTGATTGGAG+AGG | + | Chr5:28693789-28693808 | MsG0580025985.01.T01:CDS | 45.0% |
| ! | TGCAGGGAAGTATAATGGTG+GGG | + | Chr5:28695195-28695214 | MsG0580025985.01.T01:CDS | 45.0% |
| !! | AGCATTGGTGTTGGCCTAAT+TGG | - | Chr5:28694995-28695014 | None:intergenic | 45.0% |
| !! | AGGATTGTTATTGGTGGTGG+TGG | - | Chr5:28693495-28693514 | None:intergenic | 45.0% |
| !! | ATTGTTATTGGTGGTGGTGG+TGG | - | Chr5:28693492-28693511 | None:intergenic | 45.0% |
| !! | GGTAATGAGTGCTGAAAGAG+TGG | + | Chr5:28694964-28694983 | MsG0580025985.01.T01:CDS | 45.0% |
| !!! | CCTGCAGCCATGGTTTTAAA+AGG | - | Chr5:28695181-28695200 | None:intergenic | 45.0% |
| !!! | CCTTTTAAAACCATGGCTGC+AGG | + | Chr5:28695178-28695197 | MsG0580025985.01.T01:CDS | 45.0% |
| ACCTTGAAGTGATAGGGCAG+TGG | + | Chr5:28695640-28695659 | MsG0580025985.01.T01:three_prime_UTR | 50.0% | |
| ATACATAACCGGCATCCGCA+GGG | - | Chr5:28693583-28693602 | None:intergenic | 50.0% | |
| ATGAAGCCGATGACGACGAA+TGG | - | Chr5:28695153-28695172 | None:intergenic | 50.0% | |
| CCTTGAAGTGATAGGGCAGT+GGG | + | Chr5:28695641-28695660 | MsG0580025985.01.T01:three_prime_UTR | 50.0% | |
| GATGACATCATTCACGCCTC+TGG | + | Chr5:28693605-28693624 | MsG0580025985.01.T01:CDS | 50.0% | |
| GGGTGTGACCTTGAAGTGAT+AGG | + | Chr5:28695633-28695652 | MsG0580025985.01.T01:three_prime_UTR | 50.0% | |
| GTTCTTGTTGGGCTTGCAAC+AGG | + | Chr5:28693767-28693786 | MsG0580025985.01.T01:CDS | 50.0% | |
| TAGCAGCCATTCGTCGTCAT+CGG | + | Chr5:28695144-28695163 | MsG0580025985.01.T01:CDS | 50.0% | |
| TCCACAAGATTCCAACCCTG+CGG | + | Chr5:28693565-28693584 | MsG0580025985.01.T01:CDS | 50.0% | |
| TCCGGTGAATGATCTTCCGA+TGG | - | Chr5:28695121-28695140 | None:intergenic | 50.0% | |
| TCTTGGTCCGGTAACATTGC+CGG | + | Chr5:28694943-28694962 | MsG0580025985.01.T01:CDS | 50.0% | |
| TGACAATGGGAAAGGCTCGA+TGG | - | Chr5:28695077-28695096 | None:intergenic | 50.0% | |
| TGATCTTCCGATGGAACCGA+AGG | - | Chr5:28695112-28695131 | None:intergenic | 50.0% | |
| TGTGAAGATGGATATGCGGC+GGG | - | Chr5:28694887-28694906 | None:intergenic | 50.0% | |
| TTGTTGGGCTTGCAACAGGT+TGG | + | Chr5:28693771-28693790 | MsG0580025985.01.T01:CDS | 50.0% | |
| ! | ACACCTTTTCCGATGGGTCT+TGG | + | Chr5:28694926-28694945 | MsG0580025985.01.T01:CDS | 50.0% |
| ! | CGTTGCATGTTCTCGAGTTG+TGG | - | Chr5:28693397-28693416 | None:intergenic | 50.0% |
| ! | GAAGTATAATGGTGGGGGTG+GGG | + | Chr5:28695201-28695220 | MsG0580025985.01.T01:CDS | 50.0% |
| ! | GCAGGGAAGTATAATGGTGG+GGG | + | Chr5:28695196-28695215 | MsG0580025985.01.T01:CDS | 50.0% |
| ! | GCATGACTTGCAACCTGAGT+TGG | - | Chr5:28693846-28693865 | None:intergenic | 50.0% |
| ! | GCTGCAGGGAAGTATAATGG+TGG | + | Chr5:28695193-28695212 | MsG0580025985.01.T01:CDS | 50.0% |
| ! | GCTGCCTCCTTCTTCTAAGA+TGG | + | Chr5:28695012-28695031 | MsG0580025985.01.T01:CDS | 50.0% |
| ! | GGAAGTATAATGGTGGGGGT+GGG | + | Chr5:28695200-28695219 | MsG0580025985.01.T01:CDS | 50.0% |
| ! | TTTTCCGATGGGTCTTGGTC+CGG | + | Chr5:28694931-28694950 | MsG0580025985.01.T01:CDS | 50.0% |
| !! | GACGAATGGCTGCTACTTTC+CGG | - | Chr5:28695139-28695158 | None:intergenic | 50.0% |
| !! | GGCTTGCAACAGGTTGGTAA+AGG | + | Chr5:28693777-28693796 | MsG0580025985.01.T01:CDS | 50.0% |
| !! | TGAAGGTGTTCCTTGGACAG+AGG | + | Chr5:28693731-28693750 | MsG0580025985.01.T01:intron | 50.0% |
| !! | TGGTGTTGGCCTAATTGGCT+TGG | - | Chr5:28694990-28695009 | None:intergenic | 50.0% |
| !! | TGGTTGGTGAAGGTGTTCCT+TGG | + | Chr5:28693724-28693743 | MsG0580025985.01.T01:intron | 50.0% |
| AGAACATGCAACGACGGTGG+TGG | + | Chr5:28693404-28693423 | MsG0580025985.01.T01:CDS | 55.0% | |
| CACATTATGGCGGCATCCCT+GGG | + | Chr5:28694903-28694922 | MsG0580025985.01.T01:CDS | 55.0% | |
| CCCACTGCCCTATCACTTCA+AGG | - | Chr5:28695644-28695663 | None:intergenic | 55.0% | |
| CGATCCAGAGAACGCAAACG+AGG | + | Chr5:28693629-28693648 | MsG0580025985.01.T01:CDS | 55.0% | |
| CTGACCTCGTTTGCGTTCTC+TGG | - | Chr5:28693636-28693655 | None:intergenic | 55.0% | |
| GATACATAACCGGCATCCGC+AGG | - | Chr5:28693584-28693603 | None:intergenic | 55.0% | |
| GATAGGGCAGTGGGTACTCT+TGG | + | Chr5:28695650-28695669 | MsG0580025985.01.T01:three_prime_UTR | 55.0% | |
| GCAGGGTTGGAATCTTGTGG+AGG | - | Chr5:28693566-28693585 | None:intergenic | 55.0% | |
| GCTGCAACCTTCGGTTCCAT+CGG | + | Chr5:28695102-28695121 | MsG0580025985.01.T01:CDS | 55.0% | |
| GGACCAAGACCCATCGGAAA+AGG | - | Chr5:28694932-28694951 | None:intergenic | 55.0% | |
| GGGTTGGAATCTTGTGGAGG+TGG | - | Chr5:28693563-28693582 | None:intergenic | 55.0% | |
| GTGAAGATGGATATGCGGCG+GGG | - | Chr5:28694886-28694905 | None:intergenic | 55.0% | |
| GTTACCGGACCAAGACCCAT+CGG | - | Chr5:28694938-28694957 | None:intergenic | 55.0% | |
| TCACATTATGGCGGCATCCC+TGG | + | Chr5:28694902-28694921 | MsG0580025985.01.T01:CDS | 55.0% | |
| TCCGCAGGGTTGGAATCTTG+TGG | - | Chr5:28693569-28693588 | None:intergenic | 55.0% | |
| TCGAGAACATGCAACGACGG+TGG | + | Chr5:28693401-28693420 | MsG0580025985.01.T01:CDS | 55.0% | |
| TGAAGATGGATATGCGGCGG+GGG | - | Chr5:28694885-28694904 | None:intergenic | 55.0% | |
| TGCTCACAGTGCGGCAACAA+CGG | + | Chr5:28693371-28693390 | MsG0580025985.01.T01:CDS | 55.0% | |
| ! | CCTGGGACACCTTTTCCGAT+GGG | + | Chr5:28694920-28694939 | MsG0580025985.01.T01:CDS | 55.0% |
| ! | GACGGCGGTTCTGGTTATGA+CGG | - | Chr5:28693887-28693906 | None:intergenic | 55.0% |
| ! | GGGAAGTATAATGGTGGGGG+TGG | + | Chr5:28695199-28695218 | MsG0580025985.01.T01:CDS | 55.0% |
| !! | ATTGGTGGTGGTGGTGGTGT+TGG | - | Chr5:28693486-28693505 | None:intergenic | 55.0% |
| !! | CCATCGGAAAAGGTGTCCCA+GGG | - | Chr5:28694922-28694941 | None:intergenic | 55.0% |
| !! | GAAGGAGGCAGCATTGGTGT+TGG | - | Chr5:28695004-28695023 | None:intergenic | 55.0% |
| !! | TTGGTGGTGGTGGTGGTGTT+GGG | - | Chr5:28693485-28693504 | None:intergenic | 55.0% |
| !! | TTTGGTGTTCGACTCACCGG+AGG | + | Chr5:28693449-28693468 | MsG0580025985.01.T01:CDS | 55.0% |
| AGAGACTGGATCTCCGGCGA+CGG | - | Chr5:28693905-28693924 | None:intergenic | 60.0% | |
| ATAACCAGAACCGCCGTCGC+CGG | + | Chr5:28693889-28693908 | MsG0580025985.01.T01:CDS | 60.0% | |
| ATAACCGGCATCCGCAGGGT+TGG | - | Chr5:28693579-28693598 | None:intergenic | 60.0% | |
| GATTCCAACCCTGCGGATGC+CGG | + | Chr5:28693572-28693591 | MsG0580025985.01.T01:CDS | 60.0% | |
| GCGTTCTCTGGATCGACCAG+AGG | - | Chr5:28693624-28693643 | None:intergenic | 60.0% | |
| GGACTAGGGAGGGACTAGAG+AGG | + | Chr5:28695383-28695402 | MsG0580025985.01.T01:three_prime_UTR | 60.0% | |
| GTTGGGGTGGTTGTTGCCTC+CGG | - | Chr5:28693468-28693487 | None:intergenic | 60.0% | |
| TCTCGCACGTGCTCACAGTG+CGG | + | Chr5:28693362-28693381 | MsG0580025985.01.T01:CDS | 60.0% | |
| ! | CCCTGGGACACCTTTTCCGA+TGG | + | Chr5:28694919-28694938 | MsG0580025985.01.T01:CDS | 60.0% |
| ! | GGCGGTTCTGGTTATGACGG+CGG | - | Chr5:28693884-28693903 | None:intergenic | 60.0% |
| ! | GGTTCTGGTTATGACGGCGG+AGG | - | Chr5:28693881-28693900 | None:intergenic | 60.0% |
| !! | CCCATCGGAAAAGGTGTCCC+AGG | - | Chr5:28694923-28694942 | None:intergenic | 60.0% |
| !! | TGGTGGTGGTGGTGGTGTTG+GGG | - | Chr5:28693484-28693503 | None:intergenic | 60.0% |
| GATGGATATGCGGCGGGGGT+TGG | - | Chr5:28694881-28694900 | None:intergenic | 65.0% | |
| !! | TGGTGGTGGTGGTGTTGGGG+TGG | - | Chr5:28693481-28693500 | None:intergenic | 65.0% |
| ATCTCCGGCGACGGCGGTTC+TGG | - | Chr5:28693896-28693915 | None:intergenic | 70.0% | |
| GACTGGATCTCCGGCGACGG+CGG | - | Chr5:28693902-28693921 | None:intergenic | 70.0% | |
| GGATATGCGGCGGGGGTTGG+TGG | - | Chr5:28694878-28694897 | None:intergenic | 70.0% | |
| !! | TATGCGGCGGGGGTTGGTGG+TGG | - | Chr5:28694875-28694894 | None:intergenic | 70.0% |
| !! | GCGGGGGTTGGTGGTGGCAG+TGG | - | Chr5:28694869-28694888 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 28693155 | 28695783 | 28693155 | ID=MsG0580025985.01;Name=MsG0580025985.01 |
| Chr5 | mRNA | 28693155 | 28695783 | 28693155 | ID=MsG0580025985.01.T01;Parent=MsG0580025985.01;Name=MsG0580025985.01.T01;_AED=0.38;_eAED=0.38;_QI=198|1|1|1|1|1|3|537|314 |
| Chr5 | exon | 28693155 | 28693650 | 28693155 | ID=MsG0580025985.01.T01:exon:6989;Parent=MsG0580025985.01.T01 |
| Chr5 | exon | 28693736 | 28693944 | 28693736 | ID=MsG0580025985.01.T01:exon:6990;Parent=MsG0580025985.01.T01 |
| Chr5 | exon | 28694809 | 28695783 | 28694809 | ID=MsG0580025985.01.T01:exon:6991;Parent=MsG0580025985.01.T01 |
| Chr5 | five_prime_UTR | 28693155 | 28693352 | 28693155 | ID=MsG0580025985.01.T01:five_prime_utr;Parent=MsG0580025985.01.T01 |
| Chr5 | CDS | 28693353 | 28693650 | 28693353 | ID=MsG0580025985.01.T01:cds;Parent=MsG0580025985.01.T01 |
| Chr5 | CDS | 28693736 | 28693944 | 28693736 | ID=MsG0580025985.01.T01:cds;Parent=MsG0580025985.01.T01 |
| Chr5 | CDS | 28694809 | 28695246 | 28694809 | ID=MsG0580025985.01.T01:cds;Parent=MsG0580025985.01.T01 |
| Chr5 | three_prime_UTR | 28695247 | 28695783 | 28695247 | ID=MsG0580025985.01.T01:three_prime_utr;Parent=MsG0580025985.01.T01 |
| Gene Sequence |
| Protein sequence |
