AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003129.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003129.01.T01 MTR_1g054765 92.655 177 11 1 21 195 1 177 3.15e-121 340
MsG0180003129.01.T01 MTR_1g054750 80.513 195 33 4 1 195 1 190 2.16e-108 308
MsG0180003129.01.T01 MTR_1g083950 38.554 166 85 3 24 189 10 158 1.61e-33 117
MsG0180003129.01.T01 MTR_1g088640 39.344 183 87 6 15 192 4 167 2.83e-32 114
MsG0180003129.01.T01 MTR_1g088640 37.989 179 92 4 15 192 4 164 1.91e-31 112
MsG0180003129.01.T01 MTR_1g087200 36.000 175 91 4 17 188 2 158 6.15e-30 108
MsG0180003129.01.T01 MTR_5g065980 35.928 167 94 6 25 186 10 168 6.62e-28 103
MsG0180003129.01.T01 MTR_5g065980 36.095 169 93 7 25 186 10 170 1.19e-26 100
MsG0180003129.01.T01 MTR_7g108830 35.465 172 94 4 22 192 7 162 2.05e-22 89.0
MsG0180003129.01.T01 MTR_8g058620 35.465 172 94 4 22 192 7 162 2.05e-22 89.0
MsG0180003129.01.T01 MTR_4g064933 31.325 166 97 2 24 186 6 157 1.74e-17 76.3
MsG0180003129.01.T01 MTR_2g089350 29.834 181 96 6 24 192 26 187 4.03e-17 76.6
MsG0180003129.01.T01 MTR_1g088620 50.000 62 31 0 131 192 225 286 2.99e-16 75.1
MsG0180003129.01.T01 MTR_2g034200 29.480 173 103 4 24 192 6 163 1.48e-15 71.2
MsG0180003129.01.T01 MTR_5g077130 33.152 184 86 7 25 195 7 166 1.75e-15 70.9
MsG0180003129.01.T01 MTR_6g006190 31.034 87 60 0 100 186 52 138 4.39e-15 69.7
MsG0180003129.01.T01 MTR_5g077130 33.696 184 86 7 25 195 7 167 4.88e-15 69.7
MsG0180003129.01.T01 MTR_6g006190 31.034 87 60 0 100 186 76 162 5.05e-15 70.1
MsG0180003129.01.T01 MTR_5g065980 31.293 147 88 6 25 166 10 148 1.63e-14 69.3
MsG0180003129.01.T01 MTR_4g019800 29.940 167 92 5 27 186 9 157 1.90e-14 68.2
MsG0180003129.01.T01 MTR_7g065770 28.743 167 100 4 24 186 6 157 2.15e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003129.01.T01 AT3G11930 56.725 171 68 3 24 193 34 199 1.41e-65 200
MsG0180003129.01.T01 AT3G11930 56.977 172 67 4 24 193 34 200 1.75e-65 200
MsG0180003129.01.T01 AT3G11930 56.322 174 66 4 24 193 34 201 2.13e-65 200
MsG0180003129.01.T01 AT3G11930 49.495 198 67 5 24 193 34 226 2.14e-59 186
MsG0180003129.01.T01 AT3G58450 51.807 166 75 2 25 190 32 192 7.86e-54 171
MsG0180003129.01.T01 AT3G58450 50.000 166 71 2 25 190 32 185 3.78e-51 164
MsG0180003129.01.T01 AT1G09740 35.673 171 93 4 25 190 10 168 3.67e-29 106
MsG0180003129.01.T01 AT1G09740 35.673 171 93 4 25 190 10 168 3.67e-29 106
MsG0180003129.01.T01 AT2G47710 33.728 169 95 4 22 189 7 159 2.47e-27 101
MsG0180003129.01.T01 AT3G62550 35.714 168 84 4 24 186 8 156 4.61e-27 101
MsG0180003129.01.T01 AT1G68300 32.948 173 98 3 15 186 2 157 8.76e-25 95.1
MsG0180003129.01.T01 AT3G01520 26.136 176 97 5 24 186 7 162 9.46e-16 72.0
MsG0180003129.01.T01 AT3G53990 29.412 170 95 5 27 189 9 160 6.58e-15 69.3
MsG0180003129.01.T01 AT5G14680 30.612 98 67 1 89 186 66 162 7.94e-15 69.7
MsG0180003129.01.T01 AT3G17020 31.073 177 84 7 24 186 8 160 1.83e-14 68.2
MsG0180003129.01.T01 AT1G11360 28.090 178 102 6 22 190 37 197 3.17e-14 69.3
MsG0180003129.01.T01 AT1G11360 28.090 178 102 6 22 190 37 197 3.17e-14 69.3
MsG0180003129.01.T01 AT1G11360 28.090 178 102 6 22 190 37 197 3.17e-14 69.3
MsG0180003129.01.T01 AT1G11360 28.090 178 102 6 22 190 37 197 3.17e-14 69.3
MsG0180003129.01.T01 AT3G03270 29.444 180 80 5 25 186 7 157 2.83e-13 65.1

Find 49 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGAAAGTGTGATTCTTAA+TGG 0.228368 1:-57043810 MsG0180003129.01.T01:CDS
TGTTATGGCTACTGTTACTA+TGG 0.241649 1:-57045707 MsG0180003129.01.T01:CDS
TATGCATAAGTGTGGAAATT+TGG 0.264690 1:+57045631 None:intergenic
TTCAAAGAATCTGCAACTTC+AGG 0.297788 1:+57045226 None:intergenic
TGATAACCTCTTCAATGTTA+TGG 0.327926 1:-57045722 MsG0180003129.01.T01:CDS
CCAGCTGGTCCCATAGGTAT+AGG 0.340250 1:+57045607 None:intergenic
AAAAGGGTGATGGAGGAAAT+AGG 0.378001 1:-57045859 None:intergenic
GCAAGTTGATCTCTTAATCA+TGG 0.412365 1:-57043748 MsG0180003129.01.T01:CDS
CAGCTGGTCCCATAGGTATA+GGG 0.428625 1:+57045608 None:intergenic
TCTGCAACTTCAGGTGTTGA+TGG 0.429179 1:+57045235 None:intergenic
ATCATGGGTAGTCGTGGCCT+TGG 0.451807 1:-57043732 MsG0180003129.01.T01:CDS
TTATGCATACCCTATACCTA+TGG 0.478213 1:-57045617 MsG0180003129.01.T01:CDS
ATCTGCAGCTATTGCCTCAC+GGG 0.482712 1:-57045185 MsG0180003129.01.T01:CDS
TGCAAGAGAAATGATTAGTC+AGG 0.497260 1:-57043784 MsG0180003129.01.T01:CDS
TAACATTGAAGAGGTTATCA+AGG 0.498393 1:+57045725 None:intergenic
GAAGCTTGTATGCTCTTAAG+TGG 0.498753 1:-57045750 MsG0180003129.01.T01:CDS
GTGGCCTTGGCAAACTCAAA+AGG 0.501962 1:-57043719 MsG0180003129.01.T01:intron
TTTGGTGGCAGAGCCTTCCT+TGG 0.503463 1:-57043589 MsG0180003129.01.T01:intron
GCAAATGTGCAAGGATAAGC+AGG 0.503833 1:-57045158 MsG0180003129.01.T01:intron
GGTGGCTTCACAATGAGAAT+AGG 0.504003 1:+57043529 None:intergenic
ATCTGAAAATGAGGAGGGAA+TGG 0.505451 1:-57045674 MsG0180003129.01.T01:CDS
ATGGCTACTGTTACTATGGA+TGG 0.516532 1:-57045703 MsG0180003129.01.T01:CDS
CCAATACCAGCTGGTCCCAT+AGG 0.522576 1:+57045601 None:intergenic
AAAGAGAAGGATGAAGATGA+AGG 0.523647 1:-57045800 MsG0180003129.01.T01:CDS
CTCTTAATCATGGGTAGTCG+TGG 0.541714 1:-57043738 MsG0180003129.01.T01:CDS
GTGGAAGTGCTGATCAAATG+AGG 0.543049 1:-57045837 MsG0180003129.01.T01:CDS
AATAGTCACTTACACTTCCA+AGG 0.548894 1:+57043572 None:intergenic
TGGAACAACATCTGAAAATG+AGG 0.557443 1:-57045683 MsG0180003129.01.T01:CDS
CAAGTTGATCTCTTAATCAT+GGG 0.558572 1:-57043747 MsG0180003129.01.T01:CDS
GTCACTTACACTTCCAAGGA+AGG 0.566492 1:+57043576 None:intergenic
CCTATACCTATGGGACCAGC+TGG 0.573743 1:-57045607 MsG0180003129.01.T01:intron
AAGGTGCAGAAGAAAAGAGA+AGG 0.584561 1:-57045813 MsG0180003129.01.T01:CDS
TATGCATACCCTATACCTAT+GGG 0.588273 1:-57045616 MsG0180003129.01.T01:CDS
AATCTGCAGCTATTGCCTCA+CGG 0.590946 1:-57045186 MsG0180003129.01.T01:CDS
GTATAGGGTATGCATAAGTG+TGG 0.596401 1:+57045623 None:intergenic
ACGGGCTTTGCAAATGTGCA+AGG 0.605600 1:-57045167 MsG0180003129.01.T01:CDS
GATGAAGATGAAGGTGATGG+TGG 0.605709 1:-57045791 MsG0180003129.01.T01:CDS
CAGTAGCCATAACATTGAAG+AGG 0.606434 1:+57045716 None:intergenic
AACAACATCTGAAAATGAGG+AGG 0.606982 1:-57045680 MsG0180003129.01.T01:CDS
TGGAAGTGCTGATCAAATGA+GGG 0.609348 1:-57045836 MsG0180003129.01.T01:CDS
AACATTGAAGAGGTTATCAA+GGG 0.625008 1:+57045726 None:intergenic
ACAACATCTGAAAATGAGGA+GGG 0.642374 1:-57045679 MsG0180003129.01.T01:CDS
AAGGATGAAGATGAAGGTGA+TGG 0.645453 1:-57045794 MsG0180003129.01.T01:CDS
AAGCTTGTATGCTCTTAAGT+GGG 0.653871 1:-57045749 MsG0180003129.01.T01:CDS
GTGGCAATAGATGAGAGTGA+TGG 0.658459 1:-57045772 MsG0180003129.01.T01:CDS
GCACATTTGCAAAGCCCGTG+AGG 0.665936 1:+57045171 None:intergenic
TCTCATTGTGAAGCCACCAG+AGG 0.677993 1:-57043524 MsG0180003129.01.T01:CDS
AGGGTGATGGAGGAAATAGG+TGG 0.693358 1:-57045856 None:intergenic
AGTGCTGATCAAATGAGGGA+AGG 0.706734 1:-57045832 MsG0180003129.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATGACATTAATTAAT+AGG + Chr1:57044556-57044575 None:intergenic 10.0%
!!! AATTACACTTTTTATTTTTA+TGG - Chr1:57044844-57044863 MsG0180003129.01.T01:intron 10.0%
!!! ATCTCATAATTTTTTTTTTT+AGG - Chr1:57044751-57044770 MsG0180003129.01.T01:intron 10.0%
!!! TAGTAACTATTTTTTTTTAT+TGG - Chr1:57044946-57044965 MsG0180003129.01.T01:intron 10.0%
!!! TCTCATAATTTTTTTTTTTA+GGG - Chr1:57044752-57044771 MsG0180003129.01.T01:intron 10.0%
!! AACTAAAATAATTTCTTTGA+CGG - Chr1:57045083-57045102 MsG0180003129.01.T01:intron 15.0%
!! AATAGGATAAATTAAATGAA+GGG + Chr1:57044539-57044558 None:intergenic 15.0%
!! TAATAGGATAAATTAAATGA+AGG + Chr1:57044540-57044559 None:intergenic 15.0%
!!! AAAATAAAAAGTGTAATTCA+TGG + Chr1:57044842-57044861 None:intergenic 15.0%
!!! GTTCTAATATTTTTTACATT+TGG - Chr1:57045747-57045766 MsG0180003129.01.T01:CDS 15.0%
!!! TAAATTATGGCTTTTAAATT+TGG - Chr1:57045454-57045473 MsG0180003129.01.T01:intron 15.0%
!!! TTTTTATTTTTATGGACTTA+TGG - Chr1:57044852-57044871 MsG0180003129.01.T01:intron 15.0%
!! AAAAATGATGTAACTTTGTA+AGG - Chr1:57043855-57043874 MsG0180003129.01.T01:intron 20.0%
!! TGGTACAAATTAAAAATGAA+AGG + Chr1:57044822-57044841 None:intergenic 20.0%
!! TTCATGATAAACAGAAAATA+GGG - Chr1:57044420-57044439 MsG0180003129.01.T01:intron 20.0%
!! TTTCATGATAAACAGAAAAT+AGG - Chr1:57044419-57044438 MsG0180003129.01.T01:intron 20.0%
!!! AAGATTTTTTTTTTGAAGGA+AGG + Chr1:57044477-57044496 None:intergenic 20.0%
!!! AAGGAAGATTTTTTTTTTGA+AGG + Chr1:57044481-57044500 None:intergenic 20.0%
!!! AATGTTAAGATCTTTTTTTG+AGG - Chr1:57045160-57045179 MsG0180003129.01.T01:CDS 20.0%
!!! ATTTTGATTTCATTTATGCA+TGG - Chr1:57045718-57045737 MsG0180003129.01.T01:CDS 20.0%
!!! CTAATATTTTTTACATTTGG+TGG - Chr1:57045750-57045769 MsG0180003129.01.T01:CDS 20.0%
!!! GGGTATTTTGTTTTTATTTT+TGG + Chr1:57044519-57044538 None:intergenic 20.0%
!!! GTGATGATGTTTTAAAAATT+CGG - Chr1:57045420-57045439 MsG0180003129.01.T01:intron 20.0%
!!! TGTTTTTATTTTTGGTATAC+AGG + Chr1:57044511-57044530 None:intergenic 20.0%
!!! TTAATATTGTCCATTTTTCT+TGG - Chr1:57043885-57043904 MsG0180003129.01.T01:intron 20.0%
! AATTATGAGAGAATTAGACA+TGG + Chr1:57043832-57043851 None:intergenic 25.0%
! GAATTAGACATGGAAAAAAA+AGG + Chr1:57043822-57043841 None:intergenic 25.0%
! GTAATATTGCATATGTTAGA+CGG - Chr1:57045318-57045337 MsG0180003129.01.T01:intron 25.0%
! TCATGATAAACAGAAAATAG+GGG - Chr1:57044421-57044440 MsG0180003129.01.T01:intron 25.0%
! TCTATTCTAAATCATGAGAT+TGG + Chr1:57044780-57044799 None:intergenic 25.0%
! TTCTCGTAGACAATATAATT+TGG + Chr1:57044716-57044735 None:intergenic 25.0%
!! AGGGAATGAACAATTTTAAA+AGG + Chr1:57044292-57044311 None:intergenic 25.0%
!! AGTTAACTGTCACTTATATA+AGG + Chr1:57044312-57044331 None:intergenic 25.0%
!! GTTAACTGTCACTTATATAA+GGG + Chr1:57044311-57044330 None:intergenic 25.0%
!!! GGGAATGAACAATTTTAAAA+GGG + Chr1:57044291-57044310 None:intergenic 25.0%
AACATTGAAGAGGTTATCAA+GGG + Chr1:57043631-57043650 None:intergenic 30.0%
AACTTACACAAGTGTATTCT+CGG + Chr1:57043997-57044016 None:intergenic 30.0%
ATGATGTAACTTTGTAAGGT+TGG - Chr1:57043859-57043878 MsG0180003129.01.T01:intron 30.0%
ATGCATACTTTCATTGGATT+TGG + Chr1:57045504-57045523 None:intergenic 30.0%
CATGATAAACAGAAAATAGG+GGG - Chr1:57044422-57044441 MsG0180003129.01.T01:intron 30.0%
CTTACGTTACGTTCTTATAT+AGG - Chr1:57044991-57045010 MsG0180003129.01.T01:intron 30.0%
GGGAATGAACAAAAATAGAT+GGG - Chr1:57044040-57044059 MsG0180003129.01.T01:intron 30.0%
GGTAGAAGCTACATAAATTA+TGG - Chr1:57045441-57045460 MsG0180003129.01.T01:intron 30.0%
TAACATTGAAGAGGTTATCA+AGG + Chr1:57043632-57043651 None:intergenic 30.0%
TATGCATAAGTGTGGAAATT+TGG + Chr1:57043726-57043745 None:intergenic 30.0%
TCATTGATGCATACTTTCAT+TGG + Chr1:57045510-57045529 None:intergenic 30.0%
TGATAACCTCTTCAATGTTA+TGG - Chr1:57043632-57043651 MsG0180003129.01.T01:intron 30.0%
TTCCCATTCCTTTATATCAA+CGG + Chr1:57044365-57044384 None:intergenic 30.0%
TTTCATTTATGCATGGTTGA+TGG - Chr1:57045725-57045744 MsG0180003129.01.T01:CDS 30.0%
! ACGGAAGTGTATTAAATCTA+TGG - Chr1:57045102-57045121 MsG0180003129.01.T01:intron 30.0%
! CAAAGTATCACACAAGAAAA+AGG + Chr1:57044079-57044098 None:intergenic 30.0%
! CGGAAGTGTATTAAATCTAT+GGG - Chr1:57045103-57045122 MsG0180003129.01.T01:intron 30.0%
!! AAAGGAAGATGATTGCTTTT+TGG + Chr1:57044448-57044467 None:intergenic 30.0%
!! CAAGTTGATCTCTTAATCAT+GGG - Chr1:57045607-57045626 MsG0180003129.01.T01:intron 30.0%
AAAGAGAAGGATGAAGATGA+AGG - Chr1:57043554-57043573 MsG0180003129.01.T01:CDS 35.0%
AACAACATCTGAAAATGAGG+AGG - Chr1:57043674-57043693 MsG0180003129.01.T01:intron 35.0%
AAGCTTGTATGCTCTTAAGT+GGG - Chr1:57043605-57043624 MsG0180003129.01.T01:intron 35.0%
AATAGTCACTTACACTTCCA+AGG + Chr1:57045785-57045804 None:intergenic 35.0%
ACAAACATTATTCTCTCCTC+AGG - Chr1:57044622-57044641 MsG0180003129.01.T01:intron 35.0%
ACAACATCTGAAAATGAGGA+GGG - Chr1:57043675-57043694 MsG0180003129.01.T01:intron 35.0%
AGGAAGTAAGCAAAGAAAGT+TGG + Chr1:57043802-57043821 None:intergenic 35.0%
ATATACTAACCAATACCAGC+TGG + Chr1:57043765-57043784 None:intergenic 35.0%
ATGGATAAACAGCTGTTGAA+AGG + Chr1:57044103-57044122 None:intergenic 35.0%
CAGAAATGAGCAAAATCAGA+TGG + Chr1:57043942-57043961 None:intergenic 35.0%
CCTCAGGATAGTAAAATCAA+CGG - Chr1:57044638-57044657 MsG0180003129.01.T01:intron 35.0%
CGGGAATGAACAAAAATAGA+TGG - Chr1:57044039-57044058 MsG0180003129.01.T01:intron 35.0%
GAGCAATTCTCCAAGAAAAA+TGG + Chr1:57043898-57043917 None:intergenic 35.0%
GATAGTATATATGCACGACT+AGG + Chr1:57044882-57044901 None:intergenic 35.0%
GTATGCATCAATGAAATTGC+AGG - Chr1:57045516-57045535 MsG0180003129.01.T01:intron 35.0%
GTGCATATATACTATCACCT+TGG - Chr1:57044886-57044905 MsG0180003129.01.T01:intron 35.0%
TATGCATACCCTATACCTAT+GGG - Chr1:57043738-57043757 MsG0180003129.01.T01:CDS 35.0%
TGCCGTTGATATAAAGGAAT+GGG - Chr1:57044360-57044379 MsG0180003129.01.T01:intron 35.0%
TGGAACAACATCTGAAAATG+AGG - Chr1:57043671-57043690 MsG0180003129.01.T01:intron 35.0%
TGTGTAAGTTAATTCACGCT+CGG - Chr1:57044007-57044026 MsG0180003129.01.T01:intron 35.0%
TGTTATGGCTACTGTTACTA+TGG - Chr1:57043647-57043666 MsG0180003129.01.T01:intron 35.0%
TTATGCATACCCTATACCTA+TGG - Chr1:57043737-57043756 MsG0180003129.01.T01:CDS 35.0%
TTCAAAGAATCTGCAACTTC+AGG + Chr1:57044131-57044150 None:intergenic 35.0%
TTGGTATACAGGAAAGTGAA+AGG + Chr1:57044500-57044519 None:intergenic 35.0%
TTTGAAGGAAGGAAAGTGAA+AGG + Chr1:57044466-57044485 None:intergenic 35.0%
! GCAGAAAGTGTGATTCTTAA+TGG - Chr1:57045544-57045563 MsG0180003129.01.T01:intron 35.0%
! TGCAAGAGAAATGATTAGTC+AGG - Chr1:57045570-57045589 MsG0180003129.01.T01:intron 35.0%
!! GCAAGTTGATCTCTTAATCA+TGG - Chr1:57045606-57045625 MsG0180003129.01.T01:intron 35.0%
AAGGATGAAGATGAAGGTGA+TGG - Chr1:57043560-57043579 MsG0180003129.01.T01:CDS 40.0%
AAGGTGCAGAAGAAAAGAGA+AGG - Chr1:57043541-57043560 MsG0180003129.01.T01:CDS 40.0%
ATCTGAAAATGAGGAGGGAA+TGG - Chr1:57043680-57043699 MsG0180003129.01.T01:intron 40.0%
ATGGCTACTGTTACTATGGA+TGG - Chr1:57043651-57043670 MsG0180003129.01.T01:intron 40.0%
ATTCAGATGCTCTTTAGCCA+AGG + Chr1:57044906-57044925 None:intergenic 40.0%
CAGATGGAAGAAGAGCAATT+TGG + Chr1:57043926-57043945 None:intergenic 40.0%
CAGTAGCCATAACATTGAAG+AGG + Chr1:57043641-57043660 None:intergenic 40.0%
CTGCCGTTGATATAAAGGAA+TGG - Chr1:57044359-57044378 MsG0180003129.01.T01:intron 40.0%
GAAATGAGTCTCGCTTTACA+AGG + Chr1:57045033-57045052 None:intergenic 40.0%
GAAGCTTGTATGCTCTTAAG+TGG - Chr1:57043604-57043623 MsG0180003129.01.T01:intron 40.0%
GTATAGGGTATGCATAAGTG+TGG + Chr1:57043734-57043753 None:intergenic 40.0%
! AGCTGCAGATTTTTCTTGCT+GGG + Chr1:57044159-57044178 None:intergenic 40.0%
! GAGTACTGCCGTTGATATAA+AGG - Chr1:57044354-57044373 MsG0180003129.01.T01:intron 40.0%
! TAGCTGCAGATTTTTCTTGC+TGG + Chr1:57044160-57044179 None:intergenic 40.0%
! TTTTTACGGAACTTCCGTCA+AGG + Chr1:57045055-57045074 None:intergenic 40.0%
!! CAGTACTCGACATTTTTCAG+TGG + Chr1:57044342-57044361 None:intergenic 40.0%
!! TGGAAGTGCTGATCAAATGA+GGG - Chr1:57043518-57043537 MsG0180003129.01.T01:CDS 40.0%
!!! CCGTTGATTTTACTATCCTG+AGG + Chr1:57044641-57044660 None:intergenic 40.0%
!!! CTTACCTTTTGAGTTTGCCA+AGG + Chr1:57045642-57045661 None:intergenic 40.0%
AATCTGCAGCTATTGCCTCA+CGG - Chr1:57044168-57044187 MsG0180003129.01.T01:intron 45.0%
AGCGAGACTCATTTCCTTGA+CGG - Chr1:57045038-57045057 MsG0180003129.01.T01:intron 45.0%
CTCTTAATCATGGGTAGTCG+TGG - Chr1:57045616-57045635 MsG0180003129.01.T01:CDS 45.0%
GCAAATGTGCAAGGATAAGC+AGG - Chr1:57044196-57044215 MsG0180003129.01.T01:intron 45.0%
GCTGAGAAATACACATGCCT+GGG - Chr1:57043961-57043980 MsG0180003129.01.T01:intron 45.0%
GGTGGCTTCACAATGAGAAT+AGG + Chr1:57045828-57045847 None:intergenic 45.0%
GTCACTTACACTTCCAAGGA+AGG + Chr1:57045781-57045800 None:intergenic 45.0%
GTGGCAATAGATGAGAGTGA+TGG - Chr1:57043582-57043601 MsG0180003129.01.T01:intron 45.0%
TGCTGAGAAATACACATGCC+TGG - Chr1:57043960-57043979 MsG0180003129.01.T01:intron 45.0%
TTCTCGGTATGAGTTAACCC+AGG + Chr1:57043981-57044000 None:intergenic 45.0%
! GATGAAGATGAAGGTGATGG+TGG - Chr1:57043563-57043582 MsG0180003129.01.T01:CDS 45.0%
! TTTTTATGGTGCTCCTCTGG+TGG + Chr1:57045846-57045865 None:intergenic 45.0%
!! AGTGCTGATCAAATGAGGGA+AGG - Chr1:57043522-57043541 MsG0180003129.01.T01:CDS 45.0%
!! GTGGAAGTGCTGATCAAATG+AGG - Chr1:57043517-57043536 MsG0180003129.01.T01:CDS 45.0%
!! TCTGCAACTTCAGGTGTTGA+TGG + Chr1:57044122-57044141 None:intergenic 45.0%
!! TGCTTTTTATGGTGCTCCTC+TGG + Chr1:57045849-57045868 None:intergenic 45.0%
!! TTCACGCTCGGCTATTTTGA+CGG - Chr1:57044019-57044038 MsG0180003129.01.T01:intron 45.0%
!! CATAAATATTAAATAAATTT+AGG + Chr1:57045379-57045398 None:intergenic 5.0%
!!! TTAGTTTTTTTTTTTTTTTA+CGG + Chr1:57045069-57045088 None:intergenic 5.0%
ACGGGCTTTGCAAATGTGCA+AGG - Chr1:57044187-57044206 MsG0180003129.01.T01:intron 50.0%
ATCTGCAGCTATTGCCTCAC+GGG - Chr1:57044169-57044188 MsG0180003129.01.T01:intron 50.0%
CAGCTGGTCCCATAGGTATA+GGG + Chr1:57043749-57043768 None:intergenic 50.0%
TCTCATTGTGAAGCCACCAG+AGG - Chr1:57045830-57045849 MsG0180003129.01.T01:CDS 50.0%
TGTGCAAGGATAAGCAGGTG+CGG - Chr1:57044201-57044220 MsG0180003129.01.T01:intron 50.0%
! GTGGCCTTGGCAAACTCAAA+AGG - Chr1:57045635-57045654 MsG0180003129.01.T01:CDS 50.0%
!!! TCACGCTCGGCTATTTTGAC+GGG - Chr1:57044020-57044039 MsG0180003129.01.T01:intron 50.0%
ATCATGGGTAGTCGTGGCCT+TGG - Chr1:57045622-57045641 MsG0180003129.01.T01:CDS 55.0%
CCAATACCAGCTGGTCCCAT+AGG + Chr1:57043756-57043775 None:intergenic 55.0%
CCAGCTGGTCCCATAGGTAT+AGG + Chr1:57043750-57043769 None:intergenic 55.0%
CCTATACCTATGGGACCAGC+TGG - Chr1:57043747-57043766 MsG0180003129.01.T01:CDS 55.0%
CCTATGGGACCAGCTGGTAT+TGG - Chr1:57043753-57043772 MsG0180003129.01.T01:CDS 55.0%
GCACATTTGCAAAGCCCGTG+AGG + Chr1:57044186-57044205 None:intergenic 55.0%
! TTTGGTGGCAGAGCCTTCCT+TGG - Chr1:57045765-57045784 MsG0180003129.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr1 gene 57043504 57045872 57043504 ID=MsG0180003129.01;Name=MsG0180003129.01
Chr1 mRNA 57043504 57045872 57043504 ID=MsG0180003129.01.T01;Parent=MsG0180003129.01;Name=MsG0180003129.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|4|0|195
Chr1 exon 57045608 57045872 57045608 ID=MsG0180003129.01.T01:exon:16084;Parent=MsG0180003129.01.T01
Chr1 exon 57045159 57045265 57045159 ID=MsG0180003129.01.T01:exon:16083;Parent=MsG0180003129.01.T01
Chr1 exon 57043720 57043838 57043720 ID=MsG0180003129.01.T01:exon:16082;Parent=MsG0180003129.01.T01
Chr1 exon 57043504 57043600 57043504 ID=MsG0180003129.01.T01:exon:16081;Parent=MsG0180003129.01.T01
Chr1 CDS 57045608 57045872 57045608 ID=MsG0180003129.01.T01:cds;Parent=MsG0180003129.01.T01
Chr1 CDS 57045159 57045265 57045159 ID=MsG0180003129.01.T01:cds;Parent=MsG0180003129.01.T01
Chr1 CDS 57043720 57043838 57043720 ID=MsG0180003129.01.T01:cds;Parent=MsG0180003129.01.T01
Chr1 CDS 57043504 57043600 57043504 ID=MsG0180003129.01.T01:cds;Parent=MsG0180003129.01.T01
Gene Sequence

>MsG0180003129.01.T01

ATGGAGGAAATAGGTGGAAGTGCTGATCAAATGAGGGAAGGTGCAGAAGAAAAGAGAAGGATGAAGATGAAGGTGATGGTGGCAATAGATGAGAGTGATGGAAGCTTGTATGCTCTTAAGTGGGCCCTTGATAACCTCTTCAATGTTATGGCTACTGTTACTATGGATGGAACAACATCTGAAAATGAGGAGGGAATGGTGTTTCTTGTTCATGTTGAGCCAAATTTCCACACTTATGCATACCCTATACCTATGGGACCAGCTGCTGTTTATCCATCAACACCTGAAGTTGCAGATTCTTTGAAGAAAGCCCAGCAAGAAAAATCTGCAGCTATTGCCTCACGGGCTTTGCAAATGTGCAAGGATAAGCAGGTAAAAGCAGAAAGTGTGATTCTTAATGGAGATGCAAGAGAAATGATTAGTCAGGCTACAGAGAAAATGCAAGTTGATCTCTTAATCATGGGTAGTCGTGGCCTTGGCAAACTCAAAAGAGCCTTCCTTGGAAGTGTAAGTGACTATTGTGCACATCATGCAAAAGCACCTATTCTCATTGTGAAGCCACCAGAGGAGCACCATAAAAAGCATTGA
Protein sequence

>MsG0180003129.01.T01

MEEIGGSADQMREGAEEKRRMKMKVMVAIDESDGSLYALKWALDNLFNVMATVTMDGTTSENEEGMVFLVHVEPNFHTYAYPIPMGPAAVYPSTPEVADSLKKAQQEKSAAIASRALQMCKDKQVKAESVILNGDAREMISQATEKMQVDLLIMGSRGLGKLKRAFLGSVSDYCAHHAKAPILIVKPPEEHHKKH*