Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021376.01.T01 | RHN53459.1 | 93.478 | 92 | 6 | 0 | 3 | 94 | 5 | 96 | 3.88E-57 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021376.01.T01 | P33083 | 78.261 | 92 | 18 | 1 | 1 | 92 | 1 | 90 | 2.66E-46 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021376.01.T01 | A0A396HJG4 | 93.478 | 92 | 6 | 0 | 3 | 94 | 5 | 96 | 1.85e-57 | 181 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005039.01 | MsG0480021376.01 | 0.805104 | 1.568403e-49 | 8.226738e-47 |
| MsG0280010569.01 | MsG0480021376.01 | 0.822106 | 2.828619e-53 | 2.345132e-50 |
| MsG0280010975.01 | MsG0480021376.01 | 0.808619 | 2.833187e-50 | 1.627510e-47 |
| MsG0280011252.01 | MsG0480021376.01 | 0.802183 | 6.331048e-49 | 3.081077e-46 |
| MsG0480020408.01 | MsG0480021376.01 | 0.831764 | 1.387002e-55 | 1.519994e-52 |
| MsG0480020783.01 | MsG0480021376.01 | 0.811718 | 6.086151e-51 | 3.795264e-48 |
| MsG0480021367.01 | MsG0480021376.01 | 0.821196 | 4.591877e-53 | 3.710936e-50 |
| MsG0480021376.01 | MsG0480022537.01 | 0.805701 | 1.175507e-49 | 6.261726e-47 |
| MsG0480021376.01 | MsG0480023216.01 | 0.814055 | 1.871770e-51 | 1.242956e-48 |
| MsG0480021376.01 | MsG0480023990.01 | 0.801780 | 7.661811e-49 | 3.690676e-46 |
| MsG0480021376.01 | MsG0480023992.01 | 0.810945 | 8.954124e-51 | 5.471561e-48 |
| MsG0480021376.01 | MsG0580024873.01 | 0.810114 | 1.353664e-50 | 8.090979e-48 |
| MsG0480021376.01 | MsG0580025668.01 | 0.811465 | 6.905968e-51 | 4.277955e-48 |
| MsG0480021376.01 | MsG0580028335.01 | 0.804435 | 2.163627e-49 | 1.115452e-46 |
| MsG0480021376.01 | MsG0680034064.01 | 0.805984 | 1.025255e-49 | 5.500963e-47 |
| MsG0480021376.01 | MsG0780039975.01 | 0.826845 | 2.169434e-54 | 2.058314e-51 |
| MsG0480021376.01 | MsG0880042555.01 | 0.815913 | 7.245413e-52 | 5.060576e-49 |
| MsG0480021376.01 | MsG0880046255.01 | 0.805749 | 1.148542e-49 | 6.125659e-47 |
| MsG0380016192.01 | MsG0480021376.01 | 0.804415 | 2.183954e-49 | 1.125363e-46 |
| MsG0280007976.01 | MsG0480021376.01 | 0.800067 | 1.714875e-48 | 7.910143e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0480021386.01 | MsG0480021376.01 | PPI |
| MsG0480021386.01 | MsG0480021376.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021376.01.T01 | MTR_4g072500 | 85.106 | 94 | 12 | 1 | 1 | 94 | 1 | 92 | 1.43e-55 | 167 |
| MsG0480021376.01.T01 | MTR_4g072530 | 83.696 | 92 | 13 | 1 | 1 | 92 | 1 | 90 | 3.54e-53 | 160 |
| MsG0480021376.01.T01 | MTR_4g072480 | 79.787 | 94 | 17 | 1 | 1 | 94 | 1 | 92 | 4.17e-52 | 158 |
| MsG0480021376.01.T01 | MTR_4g072640 | 82.609 | 92 | 14 | 1 | 1 | 92 | 1 | 90 | 8.41e-52 | 157 |
| MsG0480021376.01.T01 | MTR_4g072620 | 77.660 | 94 | 19 | 1 | 1 | 94 | 1 | 92 | 3.54e-51 | 155 |
| MsG0480021376.01.T01 | MTR_4g072730 | 77.419 | 93 | 19 | 1 | 1 | 93 | 1 | 91 | 1.07e-50 | 154 |
| MsG0480021376.01.T01 | MTR_4g072680 | 78.723 | 94 | 18 | 1 | 1 | 94 | 1 | 92 | 3.18e-50 | 153 |
| MsG0480021376.01.T01 | MTR_4g072570 | 79.787 | 94 | 17 | 1 | 1 | 94 | 1 | 92 | 4.78e-50 | 153 |
| MsG0480021376.01.T01 | MTR_4g072460 | 76.596 | 94 | 20 | 1 | 1 | 94 | 1 | 92 | 1.28e-48 | 149 |
| MsG0480021376.01.T01 | MTR_3g084150 | 77.660 | 94 | 19 | 1 | 1 | 94 | 1 | 92 | 1.85e-48 | 149 |
| MsG0480021376.01.T01 | MTR_4g072310 | 77.895 | 95 | 18 | 2 | 1 | 94 | 1 | 93 | 2.61e-48 | 149 |
| MsG0480021376.01.T01 | MTR_4g072270 | 74.737 | 95 | 21 | 2 | 1 | 94 | 1 | 93 | 4.68e-48 | 148 |
| MsG0480021376.01.T01 | MTR_8g461410 | 76.596 | 94 | 20 | 1 | 1 | 94 | 1 | 92 | 5.65e-48 | 147 |
| MsG0480021376.01.T01 | MTR_3g084180 | 76.596 | 94 | 20 | 1 | 1 | 94 | 1 | 92 | 1.87e-47 | 146 |
| MsG0480021376.01.T01 | MTR_4g072880 | 74.737 | 95 | 21 | 2 | 1 | 94 | 1 | 93 | 2.99e-46 | 143 |
| MsG0480021376.01.T01 | MTR_4g050700 | 73.684 | 95 | 22 | 2 | 1 | 94 | 1 | 93 | 3.57e-46 | 143 |
| MsG0480021376.01.T01 | MTR_2g012410 | 73.684 | 95 | 22 | 2 | 1 | 94 | 1 | 93 | 3.57e-46 | 143 |
| MsG0480021376.01.T01 | MTR_3g084240 | 75.789 | 95 | 19 | 2 | 1 | 94 | 1 | 92 | 5.73e-46 | 142 |
| MsG0480021376.01.T01 | MTR_4g072860 | 73.684 | 95 | 22 | 2 | 1 | 94 | 1 | 93 | 9.16e-46 | 142 |
| MsG0480021376.01.T01 | MTR_4g072240 | 72.043 | 93 | 23 | 2 | 1 | 92 | 1 | 91 | 1.58e-45 | 141 |
| MsG0480021376.01.T01 | MTR_5g008370 | 89.189 | 74 | 8 | 0 | 20 | 93 | 18 | 91 | 1.58e-45 | 143 |
| MsG0480021376.01.T01 | MTR_4g072660 | 71.277 | 94 | 20 | 1 | 1 | 94 | 1 | 87 | 1.80e-45 | 141 |
| MsG0480021376.01.T01 | MTR_3g084170 | 75.789 | 95 | 19 | 2 | 1 | 94 | 1 | 92 | 2.19e-45 | 141 |
| MsG0480021376.01.T01 | MTR_4g072230 | 75.789 | 95 | 18 | 3 | 1 | 94 | 1 | 91 | 2.61e-45 | 141 |
| MsG0480021376.01.T01 | MTR_4g072250 | 75.789 | 95 | 19 | 3 | 1 | 94 | 1 | 92 | 3.70e-45 | 140 |
| MsG0480021376.01.T01 | MTR_4g072870 | 72.043 | 93 | 23 | 2 | 1 | 92 | 1 | 91 | 5.27e-45 | 140 |
| MsG0480021376.01.T01 | MTR_3g110042 | 77.528 | 89 | 18 | 1 | 1 | 89 | 1 | 87 | 4.53e-44 | 138 |
| MsG0480021376.01.T01 | MTR_4g072220 | 69.474 | 95 | 26 | 2 | 1 | 94 | 1 | 93 | 1.44e-43 | 137 |
| MsG0480021376.01.T01 | MTR_3g117630 | 76.404 | 89 | 19 | 1 | 6 | 94 | 6 | 92 | 1.51e-43 | 136 |
| MsG0480021376.01.T01 | MTR_4g072300 | 68.817 | 93 | 26 | 2 | 1 | 92 | 1 | 91 | 3.85e-43 | 135 |
| MsG0480021376.01.T01 | MTR_3g084220 | 72.632 | 95 | 22 | 2 | 1 | 94 | 1 | 92 | 4.88e-43 | 135 |
| MsG0480021376.01.T01 | MTR_3g084250 | 71.277 | 94 | 25 | 1 | 1 | 94 | 1 | 92 | 8.09e-43 | 135 |
| MsG0480021376.01.T01 | MTR_4g072330 | 70.968 | 93 | 21 | 2 | 1 | 92 | 1 | 88 | 2.31e-42 | 133 |
| MsG0480021376.01.T01 | MTR_4g072370 | 72.043 | 93 | 20 | 2 | 1 | 92 | 1 | 88 | 2.44e-42 | 133 |
| MsG0480021376.01.T01 | MTR_3g110032 | 71.579 | 95 | 24 | 2 | 1 | 94 | 1 | 93 | 2.49e-42 | 133 |
| MsG0480021376.01.T01 | MTR_4g072850 | 74.468 | 94 | 24 | 0 | 1 | 94 | 1 | 94 | 3.38e-42 | 133 |
| MsG0480021376.01.T01 | MTR_5g008360 | 75.610 | 82 | 20 | 0 | 13 | 94 | 2 | 83 | 9.53e-42 | 132 |
| MsG0480021376.01.T01 | MTR_3g110038 | 70.526 | 95 | 24 | 2 | 1 | 94 | 1 | 92 | 3.40e-41 | 130 |
| MsG0480021376.01.T01 | MTR_4g072260 | 67.368 | 95 | 28 | 2 | 1 | 94 | 1 | 93 | 3.62e-41 | 130 |
| MsG0480021376.01.T01 | MTR_3g084210 | 72.340 | 94 | 24 | 1 | 1 | 94 | 1 | 92 | 4.63e-41 | 130 |
| MsG0480021376.01.T01 | MTR_4g072890 | 67.742 | 93 | 27 | 2 | 1 | 92 | 1 | 91 | 8.58e-41 | 129 |
| MsG0480021376.01.T01 | MTR_4g072490 | 68.817 | 93 | 20 | 2 | 1 | 92 | 1 | 85 | 4.30e-40 | 127 |
| MsG0480021376.01.T01 | MTR_4g072830 | 71.739 | 92 | 20 | 2 | 1 | 91 | 1 | 87 | 4.51e-40 | 127 |
| MsG0480021376.01.T01 | MTR_4g072740 | 69.892 | 93 | 19 | 2 | 1 | 92 | 1 | 85 | 4.80e-40 | 127 |
| MsG0480021376.01.T01 | MTR_3g084190 | 71.277 | 94 | 25 | 1 | 1 | 94 | 1 | 92 | 1.10e-39 | 127 |
| MsG0480021376.01.T01 | MTR_8g461420 | 72.826 | 92 | 23 | 1 | 1 | 92 | 1 | 90 | 2.15e-39 | 126 |
| MsG0480021376.01.T01 | MTR_3g084160 | 71.277 | 94 | 25 | 1 | 1 | 94 | 1 | 92 | 2.30e-39 | 126 |
| MsG0480021376.01.T01 | MTR_4g072820 | 69.565 | 92 | 21 | 1 | 1 | 92 | 1 | 85 | 2.35e-39 | 125 |
| MsG0480021376.01.T01 | MTR_4g072580 | 68.817 | 93 | 20 | 2 | 1 | 92 | 1 | 85 | 5.21e-39 | 125 |
| MsG0480021376.01.T01 | MTR_4g072470 | 69.892 | 93 | 19 | 2 | 1 | 92 | 1 | 85 | 5.60e-39 | 125 |
| MsG0480021376.01.T01 | MTR_3g084230 | 72.826 | 92 | 23 | 1 | 1 | 92 | 1 | 90 | 8.28e-39 | 124 |
| MsG0480021376.01.T01 | MTR_3g084260 | 67.368 | 95 | 28 | 2 | 1 | 94 | 1 | 93 | 9.84e-39 | 124 |
| MsG0480021376.01.T01 | MTR_4g072630 | 68.478 | 92 | 23 | 1 | 1 | 92 | 1 | 86 | 1.69e-38 | 124 |
| MsG0480021376.01.T01 | MTR_4g072610 | 69.565 | 92 | 20 | 1 | 1 | 92 | 1 | 84 | 1.99e-38 | 123 |
| MsG0480021376.01.T01 | MTR_4g072550 | 76.712 | 73 | 17 | 0 | 22 | 94 | 31 | 103 | 2.36e-38 | 124 |
| MsG0480021376.01.T01 | MTR_4g072600 | 67.742 | 93 | 21 | 2 | 1 | 92 | 1 | 85 | 2.73e-38 | 123 |
| MsG0480021376.01.T01 | MTR_4g072540 | 67.391 | 92 | 24 | 1 | 1 | 92 | 1 | 86 | 3.80e-38 | 122 |
| MsG0480021376.01.T01 | MTR_4g072750 | 79.452 | 73 | 15 | 0 | 1 | 73 | 1 | 73 | 4.50e-38 | 122 |
| MsG0480021376.01.T01 | MTR_4g072940 | 71.739 | 92 | 26 | 0 | 3 | 94 | 33 | 124 | 8.06e-38 | 123 |
| MsG0480021376.01.T01 | MTR_4g072590 | 69.565 | 92 | 21 | 1 | 1 | 92 | 1 | 85 | 1.35e-37 | 121 |
| MsG0480021376.01.T01 | MTR_4g072650 | 68.478 | 92 | 21 | 1 | 1 | 92 | 1 | 84 | 2.37e-37 | 120 |
| MsG0480021376.01.T01 | MTR_4g072720 | 66.304 | 92 | 25 | 1 | 1 | 92 | 1 | 86 | 3.68e-37 | 120 |
| MsG0480021376.01.T01 | MTR_4g072465 | 66.304 | 92 | 25 | 1 | 1 | 92 | 1 | 86 | 4.06e-37 | 120 |
| MsG0480021376.01.T01 | MTR_3g110045 | 72.826 | 92 | 23 | 1 | 3 | 94 | 62 | 151 | 9.59e-37 | 121 |
| MsG0480021376.01.T01 | MTR_4g072380 | 65.591 | 93 | 24 | 2 | 1 | 92 | 1 | 86 | 1.09e-36 | 119 |
| MsG0480021376.01.T01 | MTR_4g072670 | 65.217 | 92 | 26 | 1 | 1 | 92 | 1 | 86 | 3.81e-36 | 117 |
| MsG0480021376.01.T01 | MTR_4g072510 | 65.217 | 92 | 26 | 1 | 1 | 92 | 1 | 86 | 5.84e-36 | 117 |
| MsG0480021376.01.T01 | MTR_4g072980 | 56.842 | 95 | 40 | 1 | 1 | 94 | 1 | 95 | 6.69e-33 | 110 |
| MsG0480021376.01.T01 | MTR_4g072690 | 77.273 | 66 | 15 | 0 | 27 | 92 | 20 | 85 | 1.64e-32 | 108 |
| MsG0480021376.01.T01 | MTR_4g072290 | 62.105 | 95 | 19 | 3 | 1 | 94 | 1 | 79 | 2.32e-32 | 108 |
| MsG0480021376.01.T01 | MTR_4g072450 | 75.758 | 66 | 16 | 0 | 27 | 92 | 20 | 85 | 5.98e-32 | 107 |
| MsG0480021376.01.T01 | MTR_4g072910 | 67.568 | 74 | 24 | 0 | 19 | 92 | 27 | 100 | 6.44e-32 | 107 |
| MsG0480021376.01.T01 | MTR_4g072770 | 74.242 | 66 | 17 | 0 | 27 | 92 | 15 | 80 | 1.21e-31 | 106 |
| MsG0480021376.01.T01 | MTR_4g072560 | 54.639 | 97 | 38 | 2 | 1 | 91 | 1 | 97 | 2.85e-31 | 105 |
| MsG0480021376.01.T01 | MTR_5g008350 | 63.415 | 82 | 21 | 2 | 1 | 81 | 1 | 74 | 2.94e-31 | 105 |
| MsG0480021376.01.T01 | MTR_3g084200 | 70.667 | 75 | 18 | 2 | 1 | 74 | 1 | 72 | 7.56e-31 | 105 |
| MsG0480021376.01.T01 | MTR_3g117640 | 55.446 | 101 | 37 | 2 | 1 | 93 | 1 | 101 | 2.32e-29 | 101 |
| MsG0480021376.01.T01 | MTR_4g072280 | 62.338 | 77 | 26 | 2 | 1 | 76 | 1 | 75 | 6.00e-27 | 94.4 |
| MsG0480021376.01.T01 | MTR_3g110035 | 66.667 | 66 | 22 | 0 | 29 | 94 | 73 | 138 | 6.35e-27 | 96.3 |
| MsG0480021376.01.T01 | MTR_3g113310 | 59.091 | 66 | 26 | 1 | 26 | 91 | 41 | 105 | 1.56e-25 | 91.7 |
| MsG0480021376.01.T01 | MTR_6g077850 | 55.072 | 69 | 31 | 0 | 24 | 92 | 31 | 99 | 7.95e-25 | 89.7 |
| MsG0480021376.01.T01 | MTR_3g117610 | 60.606 | 66 | 25 | 1 | 26 | 91 | 44 | 108 | 9.97e-25 | 89.7 |
| MsG0480021376.01.T01 | MTR_4g072190 | 60.606 | 66 | 25 | 1 | 26 | 91 | 35 | 99 | 3.48e-24 | 88.2 |
| MsG0480021376.01.T01 | MTR_8g076040 | 55.714 | 70 | 30 | 1 | 22 | 91 | 36 | 104 | 8.67e-23 | 84.7 |
| MsG0480021376.01.T01 | MTR_4g072930 | 44.330 | 97 | 45 | 2 | 5 | 92 | 14 | 110 | 1.60e-22 | 84.3 |
| MsG0480021376.01.T01 | MTR_5g021820 | 56.061 | 66 | 28 | 1 | 26 | 91 | 39 | 103 | 1.06e-21 | 82.0 |
| MsG0480021376.01.T01 | MTR_8g461400 | 51.579 | 95 | 16 | 3 | 1 | 94 | 1 | 66 | 1.55e-21 | 80.5 |
| MsG0480021376.01.T01 | MTR_4g124750 | 43.182 | 88 | 49 | 1 | 4 | 91 | 46 | 132 | 2.76e-21 | 82.4 |
| MsG0480021376.01.T01 | MTR_2g043960 | 42.045 | 88 | 50 | 1 | 4 | 91 | 53 | 139 | 1.24e-20 | 80.9 |
| MsG0480021376.01.T01 | MTR_4g072840 | 48.387 | 93 | 14 | 3 | 1 | 92 | 1 | 60 | 4.65e-19 | 73.9 |
| MsG0480021376.01.T01 | MTR_1g024085 | 48.101 | 79 | 40 | 1 | 7 | 85 | 17 | 94 | 3.80e-18 | 73.9 |
| MsG0480021376.01.T01 | MTR_1g009150 | 51.471 | 68 | 32 | 1 | 20 | 87 | 64 | 130 | 7.67e-18 | 73.9 |
| MsG0480021376.01.T01 | MTR_4g005310 | 51.515 | 66 | 31 | 1 | 23 | 87 | 58 | 123 | 2.81e-17 | 72.0 |
| MsG0480021376.01.T01 | MTR_1g094750 | 45.000 | 80 | 41 | 2 | 10 | 87 | 31 | 109 | 7.89e-17 | 69.7 |
| MsG0480021376.01.T01 | MTR_7g118010 | 48.529 | 68 | 32 | 2 | 27 | 92 | 23 | 89 | 1.55e-16 | 68.9 |
| MsG0480021376.01.T01 | MTR_4g005320 | 52.459 | 61 | 28 | 1 | 27 | 87 | 70 | 129 | 2.77e-16 | 69.7 |
| MsG0480021376.01.T01 | MTR_3g109160 | 41.667 | 84 | 48 | 1 | 10 | 93 | 52 | 134 | 2.77e-16 | 69.7 |
| MsG0480021376.01.T01 | MTR_3g092220 | 45.714 | 70 | 35 | 2 | 18 | 85 | 24 | 92 | 4.70e-16 | 67.8 |
| MsG0480021376.01.T01 | MTR_1g061570 | 50.725 | 69 | 33 | 1 | 25 | 93 | 17 | 84 | 1.04e-15 | 67.4 |
| MsG0480021376.01.T01 | MTR_4g072160 | 53.968 | 63 | 26 | 2 | 26 | 87 | 36 | 96 | 1.23e-15 | 67.4 |
| MsG0480021376.01.T01 | MTR_4g025830 | 47.059 | 68 | 32 | 2 | 25 | 89 | 77 | 143 | 1.23e-15 | 68.2 |
| MsG0480021376.01.T01 | MTR_8g461210 | 41.026 | 78 | 45 | 1 | 14 | 91 | 22 | 98 | 2.28e-15 | 66.2 |
| MsG0480021376.01.T01 | MTR_8g026730 | 44.118 | 68 | 35 | 2 | 27 | 92 | 27 | 93 | 3.06e-15 | 65.5 |
| MsG0480021376.01.T01 | MTR_1g063950 | 42.105 | 76 | 43 | 1 | 15 | 90 | 36 | 110 | 5.72e-15 | 65.5 |
| MsG0480021376.01.T01 | MTR_0388s0020 | 39.506 | 81 | 45 | 2 | 14 | 91 | 62 | 141 | 8.69e-15 | 65.5 |
| MsG0480021376.01.T01 | MTR_1g059770 | 41.096 | 73 | 39 | 2 | 24 | 93 | 46 | 117 | 2.39e-14 | 63.9 |
| MsG0480021376.01.T01 | MTR_7g101740 | 44.000 | 75 | 41 | 1 | 15 | 89 | 28 | 101 | 4.92e-14 | 62.8 |
| MsG0480021376.01.T01 | MTR_3g098970 | 29.545 | 88 | 61 | 1 | 7 | 94 | 33 | 119 | 6.67e-13 | 60.5 |
| MsG0480021376.01.T01 | MTR_4g021810 | 51.613 | 62 | 28 | 2 | 27 | 87 | 26 | 86 | 9.48e-13 | 59.3 |
| MsG0480021376.01.T01 | MTR_3g105900 | 64.286 | 42 | 15 | 0 | 25 | 66 | 1170 | 1211 | 1.97e-12 | 61.6 |
| MsG0480021376.01.T01 | MTR_2g066830 | 35.165 | 91 | 50 | 2 | 2 | 92 | 41 | 122 | 2.17e-12 | 59.3 |
| MsG0480021376.01.T01 | MTR_7g405740 | 45.902 | 61 | 32 | 1 | 27 | 87 | 67 | 126 | 2.88e-12 | 59.3 |
| MsG0480021376.01.T01 | MTR_3g097120 | 44.595 | 74 | 32 | 2 | 22 | 87 | 4 | 76 | 2.93e-12 | 57.8 |
| MsG0480021376.01.T01 | MTR_7g104940 | 40.323 | 62 | 36 | 1 | 30 | 91 | 53 | 113 | 3.35e-12 | 58.5 |
| MsG0480021376.01.T01 | MTR_7g104950 | 35.526 | 76 | 44 | 2 | 16 | 91 | 43 | 113 | 3.85e-12 | 58.2 |
| MsG0480021376.01.T01 | MTR_8g101520 | 37.931 | 87 | 51 | 2 | 8 | 92 | 29 | 114 | 1.17e-11 | 57.8 |
| MsG0480021376.01.T01 | MTR_7g101890 | 34.884 | 86 | 50 | 3 | 4 | 87 | 32 | 113 | 1.21e-11 | 56.6 |
| MsG0480021376.01.T01 | MTR_2g095430 | 38.667 | 75 | 41 | 2 | 9 | 79 | 27 | 100 | 2.38e-11 | 56.2 |
| MsG0480021376.01.T01 | MTR_1g063310 | 38.202 | 89 | 49 | 4 | 8 | 92 | 6 | 92 | 3.11e-11 | 55.1 |
| MsG0480021376.01.T01 | MTR_8g096470 | 45.000 | 60 | 32 | 1 | 28 | 87 | 47 | 105 | 8.16e-11 | 54.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021376.01.T01 | AT5G18020 | 65.753 | 73 | 24 | 1 | 18 | 89 | 15 | 87 | 2.90e-32 | 108 |
| MsG0480021376.01.T01 | AT4G34770 | 62.069 | 87 | 31 | 1 | 9 | 93 | 17 | 103 | 3.90e-32 | 108 |
| MsG0480021376.01.T01 | AT5G18060 | 64.474 | 76 | 26 | 1 | 18 | 92 | 15 | 90 | 5.43e-32 | 107 |
| MsG0480021376.01.T01 | AT4G38840 | 70.588 | 68 | 19 | 1 | 26 | 92 | 32 | 99 | 8.47e-32 | 107 |
| MsG0480021376.01.T01 | AT5G18080 | 63.158 | 76 | 27 | 1 | 18 | 92 | 15 | 90 | 1.01e-31 | 107 |
| MsG0480021376.01.T01 | AT4G38825 | 55.056 | 89 | 39 | 1 | 5 | 92 | 1 | 89 | 2.12e-31 | 106 |
| MsG0480021376.01.T01 | AT5G18050 | 61.842 | 76 | 28 | 1 | 18 | 92 | 15 | 90 | 3.35e-31 | 105 |
| MsG0480021376.01.T01 | AT5G18030 | 58.333 | 84 | 34 | 1 | 10 | 92 | 5 | 88 | 4.20e-31 | 105 |
| MsG0480021376.01.T01 | AT4G34800 | 62.821 | 78 | 26 | 1 | 10 | 84 | 4 | 81 | 6.42e-31 | 105 |
| MsG0480021376.01.T01 | AT2G21200 | 66.197 | 71 | 23 | 1 | 22 | 91 | 16 | 86 | 1.31e-30 | 103 |
| MsG0480021376.01.T01 | AT5G18010 | 60.526 | 76 | 29 | 1 | 18 | 92 | 15 | 90 | 9.45e-30 | 102 |
| MsG0480021376.01.T01 | AT2G21210 | 51.579 | 95 | 43 | 2 | 1 | 92 | 1 | 95 | 3.28e-29 | 100 |
| MsG0480021376.01.T01 | AT4G38850 | 65.714 | 70 | 21 | 1 | 23 | 89 | 17 | 86 | 3.31e-29 | 100 |
| MsG0480021376.01.T01 | AT3G03840 | 61.644 | 73 | 26 | 1 | 23 | 93 | 23 | 95 | 1.06e-28 | 99.4 |
| MsG0480021376.01.T01 | AT3G03820 | 60.811 | 74 | 26 | 1 | 23 | 93 | 23 | 96 | 1.12e-28 | 99.4 |
| MsG0480021376.01.T01 | AT2G21210 | 51.579 | 95 | 43 | 2 | 1 | 92 | 68 | 162 | 1.91e-28 | 100 |
| MsG0480021376.01.T01 | AT3G03850 | 67.647 | 68 | 20 | 1 | 28 | 93 | 26 | 93 | 8.58e-28 | 97.1 |
| MsG0480021376.01.T01 | AT4G34810 | 54.878 | 82 | 33 | 1 | 7 | 84 | 28 | 109 | 2.32e-27 | 96.7 |
| MsG0480021376.01.T01 | AT3G03830 | 61.972 | 71 | 24 | 1 | 22 | 89 | 19 | 89 | 1.06e-26 | 94.4 |
| MsG0480021376.01.T01 | AT4G13790 | 51.163 | 86 | 32 | 2 | 6 | 89 | 12 | 89 | 8.54e-26 | 92.0 |
| MsG0480021376.01.T01 | AT1G75580 | 63.077 | 65 | 23 | 1 | 27 | 91 | 44 | 107 | 9.93e-25 | 89.7 |
| MsG0480021376.01.T01 | AT4G38860 | 58.209 | 67 | 28 | 0 | 26 | 92 | 39 | 105 | 3.28e-24 | 88.6 |
| MsG0480021376.01.T01 | AT4G34790 | 61.538 | 65 | 23 | 1 | 27 | 89 | 39 | 103 | 3.68e-24 | 88.2 |
| MsG0480021376.01.T01 | AT4G34760 | 60.938 | 64 | 24 | 1 | 26 | 89 | 42 | 104 | 2.67e-23 | 86.3 |
| MsG0480021376.01.T01 | AT2G21220 | 57.576 | 66 | 27 | 1 | 26 | 91 | 39 | 103 | 7.10e-23 | 85.1 |
| MsG0480021376.01.T01 | AT4G34780 | 61.765 | 68 | 23 | 1 | 27 | 91 | 28 | 95 | 1.07e-22 | 84.7 |
| MsG0480021376.01.T01 | AT1G19830 | 61.765 | 68 | 24 | 2 | 26 | 92 | 47 | 113 | 2.44e-22 | 84.0 |
| MsG0480021376.01.T01 | AT3G43120 | 45.122 | 82 | 44 | 1 | 12 | 93 | 64 | 144 | 9.69e-22 | 83.6 |
| MsG0480021376.01.T01 | AT4G36110 | 45.783 | 83 | 44 | 1 | 7 | 89 | 20 | 101 | 3.10e-21 | 80.9 |
| MsG0480021376.01.T01 | AT5G20810 | 43.182 | 88 | 49 | 1 | 4 | 91 | 56 | 142 | 3.74e-21 | 82.4 |
| MsG0480021376.01.T01 | AT2G16580 | 57.812 | 64 | 26 | 1 | 26 | 89 | 43 | 105 | 5.05e-21 | 80.5 |
| MsG0480021376.01.T01 | AT5G20810 | 43.182 | 88 | 49 | 1 | 4 | 91 | 56 | 142 | 5.90e-21 | 82.4 |
| MsG0480021376.01.T01 | AT3G20220 | 48.649 | 74 | 36 | 2 | 15 | 87 | 35 | 107 | 2.09e-19 | 76.6 |
| MsG0480021376.01.T01 | AT5G66260 | 45.349 | 86 | 46 | 1 | 7 | 92 | 14 | 98 | 2.18e-19 | 75.9 |
| MsG0480021376.01.T01 | AT2G18010 | 50.000 | 72 | 35 | 1 | 18 | 89 | 39 | 109 | 3.88e-19 | 75.9 |
| MsG0480021376.01.T01 | AT1G75590 | 45.122 | 82 | 42 | 2 | 6 | 85 | 19 | 99 | 9.53e-17 | 70.9 |
| MsG0480021376.01.T01 | AT3G51200 | 51.562 | 64 | 29 | 2 | 22 | 84 | 34 | 96 | 3.40e-16 | 68.2 |
| MsG0480021376.01.T01 | AT2G46690 | 39.744 | 78 | 43 | 2 | 19 | 93 | 16 | 92 | 6.42e-16 | 67.8 |
| MsG0480021376.01.T01 | AT2G37030 | 49.231 | 65 | 32 | 1 | 26 | 90 | 48 | 111 | 2.15e-15 | 66.6 |
| MsG0480021376.01.T01 | AT5G10990 | 47.826 | 69 | 35 | 1 | 17 | 85 | 31 | 98 | 2.79e-15 | 66.6 |
| MsG0480021376.01.T01 | AT4G34750 | 46.154 | 65 | 34 | 1 | 25 | 89 | 35 | 98 | 2.85e-15 | 66.6 |
| MsG0480021376.01.T01 | AT4G34750 | 46.154 | 65 | 34 | 1 | 25 | 89 | 35 | 98 | 2.85e-15 | 66.6 |
| MsG0480021376.01.T01 | AT3G61900 | 44.286 | 70 | 35 | 2 | 26 | 92 | 29 | 97 | 5.27e-15 | 65.9 |
| MsG0480021376.01.T01 | AT1G19840 | 52.459 | 61 | 28 | 1 | 25 | 85 | 39 | 98 | 9.17e-15 | 65.5 |
| MsG0480021376.01.T01 | AT2G45210 | 43.662 | 71 | 36 | 2 | 22 | 89 | 74 | 143 | 9.24e-15 | 65.9 |
| MsG0480021376.01.T01 | AT4G00880 | 46.479 | 71 | 35 | 2 | 24 | 92 | 25 | 94 | 1.73e-14 | 63.9 |
| MsG0480021376.01.T01 | AT3G09870 | 50.769 | 65 | 29 | 2 | 25 | 87 | 43 | 106 | 1.76e-14 | 63.9 |
| MsG0480021376.01.T01 | AT3G60690 | 45.714 | 70 | 34 | 2 | 23 | 89 | 84 | 152 | 2.81e-14 | 64.7 |
| MsG0480021376.01.T01 | AT3G12830 | 37.975 | 79 | 48 | 1 | 14 | 92 | 37 | 114 | 4.54e-14 | 63.2 |
| MsG0480021376.01.T01 | AT4G31320 | 46.970 | 66 | 34 | 1 | 22 | 87 | 75 | 139 | 4.62e-14 | 64.3 |
| MsG0480021376.01.T01 | AT4G09530 | 42.466 | 73 | 39 | 2 | 24 | 93 | 25 | 97 | 8.38e-14 | 62.0 |
| MsG0480021376.01.T01 | AT2G24400 | 52.459 | 61 | 28 | 1 | 27 | 87 | 64 | 123 | 1.42e-13 | 63.2 |
| MsG0480021376.01.T01 | AT5G53590 | 41.667 | 72 | 36 | 2 | 26 | 92 | 45 | 115 | 1.49e-13 | 62.0 |
| MsG0480021376.01.T01 | AT1G56150 | 36.634 | 101 | 49 | 2 | 6 | 92 | 3 | 102 | 1.64e-13 | 61.2 |
| MsG0480021376.01.T01 | AT3G53250 | 43.077 | 65 | 33 | 1 | 26 | 90 | 51 | 111 | 5.23e-13 | 60.5 |
| MsG0480021376.01.T01 | AT2G36210 | 38.667 | 75 | 46 | 0 | 17 | 91 | 44 | 118 | 7.44e-13 | 60.1 |
| MsG0480021376.01.T01 | AT3G53250 | 43.077 | 65 | 33 | 1 | 26 | 90 | 82 | 142 | 1.02e-12 | 60.5 |
| MsG0480021376.01.T01 | AT4G12410 | 45.312 | 64 | 31 | 2 | 27 | 87 | 76 | 138 | 1.13e-12 | 60.1 |
| MsG0480021376.01.T01 | AT4G22620 | 41.176 | 68 | 36 | 2 | 23 | 87 | 75 | 141 | 3.34e-12 | 58.9 |
| MsG0480021376.01.T01 | AT1G76190 | 44.286 | 70 | 37 | 2 | 18 | 87 | 12 | 79 | 7.32e-12 | 57.4 |
| MsG0480021376.01.T01 | AT1G16510 | 39.437 | 71 | 42 | 1 | 21 | 91 | 48 | 117 | 8.10e-12 | 57.8 |
| MsG0480021376.01.T01 | AT1G20470 | 37.349 | 83 | 50 | 2 | 5 | 87 | 1 | 81 | 2.17e-11 | 56.6 |
| MsG0480021376.01.T01 | AT1G79130 | 38.356 | 73 | 44 | 1 | 19 | 91 | 40 | 111 | 7.88e-11 | 55.1 |
Find 26 sgRNAs with CRISPR-Local
Find 27 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTGTTCAAGTATGATAT+TGG | 0.253620 | 4:-57224719 | None:intergenic |
| CATATTACCTCTTGCTTGAA+TGG | 0.296831 | 4:+57224839 | MsG0480021376.01.T01:CDS |
| GTTTGTTCAAGTATGATATT+GGG | 0.356462 | 4:-57224718 | None:intergenic |
| AGTCAAGCTGAGGAAGAGTT+TGG | 0.376098 | 4:+57224761 | MsG0480021376.01.T01:CDS |
| ATATTACCTCTTGCTTGAAT+GGG | 0.458776 | 4:+57224840 | MsG0480021376.01.T01:CDS |
| GTTTGGATATGATCATCCTA+TGG | 0.460845 | 4:+57224778 | MsG0480021376.01.T01:CDS |
| CCCGTCGAATAACGTTTAAA+CGG | 0.487929 | 4:-57224592 | None:intergenic |
| CCGTTTAAACGTTATTCGAC+GGG | 0.508828 | 4:+57224592 | MsG0480021376.01.T01:CDS |
| AATATGTTGGAAGGCATCTT+CGG | 0.510466 | 4:-57224822 | None:intergenic |
| TACACTGCAAGATATCCCTT+TGG | 0.534094 | 4:-57224665 | None:intergenic |
| CTCAACAAGTATTGAAACGA+TGG | 0.539880 | 4:-57224740 | None:intergenic |
| GGCATCTTCGGTGCAAGGAA+TGG | 0.540062 | 4:-57224810 | None:intergenic |
| GGATATCTTGCAGTGTATGT+TGG | 0.542806 | 4:+57224671 | MsG0480021376.01.T01:CDS |
| TCCGTTTAAACGTTATTCGA+CGG | 0.544009 | 4:+57224591 | MsG0480021376.01.T01:CDS |
| AAAATCATCAGAAGTACCAA+AGG | 0.569679 | 4:+57224649 | MsG0480021376.01.T01:CDS |
| TGGAAGGCATCTTCGGTGCA+AGG | 0.581063 | 4:-57224815 | None:intergenic |
| TCAAGCAAGAGGTAATATGT+TGG | 0.581622 | 4:-57224835 | None:intergenic |
| AAATCATCAGAAGTACCAAA+GGG | 0.583576 | 4:+57224650 | MsG0480021376.01.T01:CDS |
| TCATAGCCCATTCAAGCAAG+AGG | 0.588293 | 4:-57224846 | None:intergenic |
| GCAAGAGGTAATATGTTGGA+AGG | 0.588982 | 4:-57224831 | None:intergenic |
| TTTGGATATGATCATCCTAT+GGG | 0.589729 | 4:+57224779 | MsG0480021376.01.T01:CDS |
| GGATATGATCATCCTATGGG+TGG | 0.607666 | 4:+57224782 | MsG0480021376.01.T01:CDS |
| ATACTTGTTGAGTCAAGCTG+AGG | 0.622437 | 4:+57224751 | MsG0480021376.01.T01:CDS |
| GGAATGGTGAGGCCACCCAT+AGG | 0.638989 | 4:-57224794 | None:intergenic |
| CTTCGGTGCAAGGAATGGTG+AGG | 0.671810 | 4:-57224805 | None:intergenic |
| ATGTTGGCGAGAAAATGAAG+CGG | 0.743921 | 4:+57224687 | MsG0480021376.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GTTTGTTCAAGTATGATATT+GGG | - | Chr4:57224721-57224740 | None:intergenic | 25.0% |
| ATATTACCTCTTGCTTGAAT+GGG | + | Chr4:57224840-57224859 | MsG0480021376.01.T01:CDS | 30.0% | |
| TTTGGATATGATCATCCTAT+GGG | + | Chr4:57224779-57224798 | MsG0480021376.01.T01:CDS | 30.0% | |
| ! | GGTTTGTTCAAGTATGATAT+TGG | - | Chr4:57224722-57224741 | None:intergenic | 30.0% |
| !! | AAAATCATCAGAAGTACCAA+AGG | + | Chr4:57224649-57224668 | MsG0480021376.01.T01:CDS | 30.0% |
| !! | AAATCATCAGAAGTACCAAA+GGG | + | Chr4:57224650-57224669 | MsG0480021376.01.T01:CDS | 30.0% |
| CATATTACCTCTTGCTTGAA+TGG | + | Chr4:57224839-57224858 | MsG0480021376.01.T01:CDS | 35.0% | |
| GTTTGGATATGATCATCCTA+TGG | + | Chr4:57224778-57224797 | MsG0480021376.01.T01:CDS | 35.0% | |
| TCAAGCAAGAGGTAATATGT+TGG | - | Chr4:57224838-57224857 | None:intergenic | 35.0% | |
| TCCGTTTAAACGTTATTCGA+CGG | + | Chr4:57224591-57224610 | MsG0480021376.01.T01:CDS | 35.0% | |
| !! | AATATGTTGGAAGGCATCTT+CGG | - | Chr4:57224825-57224844 | None:intergenic | 35.0% |
| !! | CTCAACAAGTATTGAAACGA+TGG | - | Chr4:57224743-57224762 | None:intergenic | 35.0% |
| ATGTTGGCGAGAAAATGAAG+CGG | + | Chr4:57224687-57224706 | MsG0480021376.01.T01:CDS | 40.0% | |
| CCCGTCGAATAACGTTTAAA+CGG | - | Chr4:57224595-57224614 | None:intergenic | 40.0% | |
| CCGTTTAAACGTTATTCGAC+GGG | + | Chr4:57224592-57224611 | MsG0480021376.01.T01:CDS | 40.0% | |
| GCAAGAGGTAATATGTTGGA+AGG | - | Chr4:57224834-57224853 | None:intergenic | 40.0% | |
| GGATATCTTGCAGTGTATGT+TGG | + | Chr4:57224671-57224690 | MsG0480021376.01.T01:CDS | 40.0% | |
| TACACTGCAAGATATCCCTT+TGG | - | Chr4:57224668-57224687 | None:intergenic | 40.0% | |
| ! | ATACTTGTTGAGTCAAGCTG+AGG | + | Chr4:57224751-57224770 | MsG0480021376.01.T01:CDS | 40.0% |
| !!! | CTGATGATTTTGAAGCTGCT+TGG | - | Chr4:57224640-57224659 | None:intergenic | 40.0% |
| AGTCAAGCTGAGGAAGAGTT+TGG | + | Chr4:57224761-57224780 | MsG0480021376.01.T01:CDS | 45.0% | |
| GGATATGATCATCCTATGGG+TGG | + | Chr4:57224782-57224801 | MsG0480021376.01.T01:CDS | 45.0% | |
| TCATAGCCCATTCAAGCAAG+AGG | - | Chr4:57224849-57224868 | None:intergenic | 45.0% | |
| ! | CTTCGGTGCAAGGAATGGTG+AGG | - | Chr4:57224808-57224827 | None:intergenic | 55.0% |
| ! | GGCATCTTCGGTGCAAGGAA+TGG | - | Chr4:57224813-57224832 | None:intergenic | 55.0% |
| !! | TGGAAGGCATCTTCGGTGCA+AGG | - | Chr4:57224818-57224837 | None:intergenic | 55.0% |
| GGAATGGTGAGGCCACCCAT+AGG | - | Chr4:57224797-57224816 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 57224584 | 57224868 | 57224584 | ID=MsG0480021376.01;Name=MsG0480021376.01 |
| Chr4 | mRNA | 57224584 | 57224868 | 57224584 | ID=MsG0480021376.01.T01;Parent=MsG0480021376.01;Name=MsG0480021376.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|94 |
| Chr4 | exon | 57224584 | 57224868 | 57224584 | ID=MsG0480021376.01.T01:exon:7186;Parent=MsG0480021376.01.T01 |
| Chr4 | CDS | 57224584 | 57224868 | 57224584 | ID=MsG0480021376.01.T01:cds;Parent=MsG0480021376.01.T01 |
| Gene Sequence |
| Protein sequence |
