AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024152.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024152.01.T01 MTR_5g006450 94.915 177 9 0 90 266 14 190 6.74e-122 345
MsG0580024152.01.T01 MTR_5g006470 77.966 177 37 1 90 266 14 188 2.91e-95 278
MsG0580024152.01.T01 MTR_5g006510 75.281 178 41 2 90 266 16 191 6.28e-92 270
MsG0580024152.01.T01 MTR_5g006520 79.661 177 36 0 90 266 1732 1908 1.16e-91 296
MsG0580024152.01.T01 MTR_5g006520 52.000 75 13 1 173 247 1655 1706 1.74e-11 64.7
MsG0580024152.01.T01 MTR_5g006460 75.138 181 39 4 90 266 15 193 1.89e-89 263
MsG0580024152.01.T01 MTR_1g103110 67.241 174 55 1 93 266 19 190 1.66e-82 246
MsG0580024152.01.T01 MTR_1g103150 63.218 174 62 1 93 266 19 190 2.49e-77 233
MsG0580024152.01.T01 MTR_7g114410 42.442 172 96 1 92 263 3 171 4.21e-46 152
MsG0580024152.01.T01 MTR_3g463610 39.766 171 103 0 93 263 3 173 2.44e-43 147
MsG0580024152.01.T01 MTR_7g114410 42.038 157 88 1 92 248 3 156 3.92e-42 142
MsG0580024152.01.T01 MTR_7g024760 41.667 168 93 3 96 263 7 169 1.66e-37 130
MsG0580024152.01.T01 MTR_7g024780 39.766 171 99 2 93 263 4 170 1.29e-36 128
MsG0580024152.01.T01 MTR_7g024765 39.286 168 97 3 96 263 7 169 1.33e-35 125
MsG0580024152.01.T01 MTR_1g103320 53.846 78 34 1 129 206 13 88 5.58e-19 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024152.01.T01 AT2G32030 51.190 168 75 3 97 263 24 185 2.02e-56 179
MsG0580024152.01.T01 AT2G32020 50.595 168 76 2 97 263 19 180 8.18e-53 170
MsG0580024152.01.T01 AT3G22560 38.824 170 99 2 96 263 6 172 1.83e-35 125

Find 69 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTCTAGGCTCTAAATAT+TGG 0.292142 5:-1367837 MsG0580024152.01.T01:CDS
TCCTTAGAACTCCCTCCTTT+TGG 0.297796 5:+1367677 None:intergenic
GCAGAACTTGGCTATGTTCT+AGG 0.302641 5:-1367850 MsG0580024152.01.T01:CDS
TGTTCTAGGCTCTAAATATT+GGG 0.316974 5:-1367836 MsG0580024152.01.T01:CDS
GAAGGGCTCGGAGTGTGATT+TGG 0.319800 5:+1368094 None:intergenic
GAGTTCCCAAGAGCAGAATT+TGG 0.329740 5:+1368020 None:intergenic
GCTCTAAATATTGGGGTAAA+GGG 0.356917 5:-1367828 MsG0580024152.01.T01:CDS
AAGGGCTCGGAGTGTGATTT+GGG 0.367793 5:+1368095 None:intergenic
TATAGGTATTTCACAGAATC+TGG 0.383769 5:-1369772 MsG0580024152.01.T01:intron
CTAAACAATTGAATTATAGT+TGG 0.392086 5:+1367590 None:intergenic
TGCATCAATGATCATGCAAT+TGG 0.393506 5:-1367925 MsG0580024152.01.T01:CDS
ATATAGCTACCAAGTTTCTA+TGG 0.402105 5:-1367960 MsG0580024152.01.T01:CDS
GGCAAGAGTTCAAGCAGAAT+GGG 0.407135 5:-1370442 MsG0580024152.01.T01:CDS
TCCAAAAGGAGGGAGTTCTA+AGG 0.410439 5:-1367678 MsG0580024152.01.T01:CDS
AGGTTTAAAGAGGAGATAAC+AGG 0.410733 5:-1369858 MsG0580024152.01.T01:CDS
CAAGCAAGAAAAGGGAAGTA+AGG 0.418515 5:+1368338 None:intergenic
GTTCACCTGGTGATAAATCT+AGG 0.421080 5:-1367882 MsG0580024152.01.T01:CDS
GGCTCTAAATATTGGGGTAA+AGG 0.422886 5:-1367829 MsG0580024152.01.T01:CDS
AAGTGGCCAAATTCTGCTCT+TGG 0.423997 5:-1368026 MsG0580024152.01.T01:CDS
TCTTGGACAACACTAAATTC+TGG 0.426819 5:+1369813 None:intergenic
AAGGGAAGTAAGGGATTTCA+AGG 0.428536 5:+1368348 None:intergenic
GTTGATGCCATCATCCTTGC+TGG 0.429573 5:+1367993 None:intergenic
TCCAATATTCAGGTTTAAAG+AGG 0.429627 5:-1369868 MsG0580024152.01.T01:intron
AGAAGGAATCAAGCAAGAAA+AGG 0.437995 5:+1368329 None:intergenic
ATTCTGTGAGTTGTCTTACT+TGG 0.446468 5:-1367767 MsG0580024152.01.T01:CDS
TGCTGGGTCTCAAAGAGTGC+TGG 0.460731 5:-1367713 MsG0580024152.01.T01:CDS
TTTAGTGTTGTCCAAGATGC+TGG 0.470013 5:-1369807 MsG0580024152.01.T01:CDS
AGTGGCCAAATTCTGCTCTT+GGG 0.474265 5:-1368025 MsG0580024152.01.T01:CDS
ATTCATGTCTCTGCCTGCCA+TGG 0.476348 5:+1368374 None:intergenic
AGGAACAAATGTGCAGAACT+TGG 0.477895 5:-1367862 MsG0580024152.01.T01:CDS
AGGAAATATTTGTTCATGAA+AGG 0.480337 5:-1367658 MsG0580024152.01.T01:CDS
TGGCAAGAGTTCAAGCAGAA+TGG 0.482494 5:-1370443 MsG0580024152.01.T01:CDS
AAAGGAAGTTGCACGGAAGA+AGG 0.484276 5:+1368312 None:intergenic
GCTGGTATGCTTGATACTAT+AGG 0.487365 5:-1369789 MsG0580024152.01.T01:CDS
GTGAGTTGTCTTACTTGGAA+AGG 0.487957 5:-1367762 MsG0580024152.01.T01:CDS
GCTTGAAGCTTTAGTTGATG+TGG 0.488968 5:-1367740 MsG0580024152.01.T01:CDS
TATCAAGCATACCAGCATCT+TGG 0.489918 5:+1369796 None:intergenic
TGCTTTGCACCATAGAAACT+TGG 0.496119 5:+1367951 None:intergenic
TTCTGACCTTGATGATCTCA+TGG 0.505164 5:-1368067 MsG0580024152.01.T01:CDS
CATCAAGGTCAGAAAGTTGA+AGG 0.505953 5:+1368076 None:intergenic
GAAGGAATCAAGCAAGAAAA+GGG 0.508341 5:+1368330 None:intergenic
TGTTGTGAAACAAGTGGTTA+AGG 0.511157 5:-1367794 MsG0580024152.01.T01:CDS
CAAAGAGTGCTGGAGAAAGC+TGG 0.517457 5:-1367703 MsG0580024152.01.T01:CDS
ATATTCAAGTCAACCATGGC+AGG 0.521318 5:-1368387 MsG0580024152.01.T01:CDS
TTAGTTGATGTGGAAAATGC+TGG 0.527178 5:-1367730 MsG0580024152.01.T01:CDS
GGTCAGAAAGTTGAAGGGCT+CGG 0.528148 5:+1368082 None:intergenic
CAGGAAATGAAACGATTGAC+TGG 0.531802 5:-1369839 MsG0580024152.01.T01:CDS
TTGTTCCTAGATTTATCACC+AGG 0.541277 5:+1367877 None:intergenic
TCTCTATCCTCAAGTTCACC+TGG 0.545696 5:-1367895 MsG0580024152.01.T01:CDS
AAGCAAGAAAAGGGAAGTAA+GGG 0.556004 5:+1368339 None:intergenic
CTCTACACCAGCAAGGATGA+TGG 0.559987 5:-1368000 MsG0580024152.01.T01:CDS
GAAAGCTGGTTTCCAAAAGG+AGG 0.562242 5:-1367689 MsG0580024152.01.T01:CDS
CTCTAAATATTGGGGTAAAG+GGG 0.564900 5:-1367827 MsG0580024152.01.T01:CDS
GGAGAAAGCTGGTTTCCAAA+AGG 0.570344 5:-1367692 MsG0580024152.01.T01:CDS
TAGTTGATGTGGAAAATGCT+GGG 0.573363 5:-1367729 MsG0580024152.01.T01:CDS
TTTATCACCAGGTGAACTTG+AGG 0.575731 5:+1367888 None:intergenic
GCATCAATGATCATGCAATT+GGG 0.576565 5:-1367924 MsG0580024152.01.T01:CDS
GAGTTCAAGCAGAATGGGGA+AGG 0.588290 5:-1370437 MsG0580024152.01.T01:CDS
CACTTGTTTCACAACACATG+TGG 0.594420 5:+1367801 None:intergenic
ACCTTGATGATCTCATGGTG+TGG 0.606125 5:-1368062 MsG0580024152.01.T01:CDS
GTTCTAGGCTCTAAATATTG+GGG 0.619040 5:-1367835 MsG0580024152.01.T01:CDS
ATTGATATTCAAGTCAACCA+TGG 0.628821 5:-1368391 MsG0580024152.01.T01:CDS
TCCACACCATGAGATCATCA+AGG 0.646997 5:+1368061 None:intergenic
ATCAAGGTCAGAAAGTTGAA+GGG 0.653293 5:+1368077 None:intergenic
AAAGCTGGTTTCCAAAAGGA+GGG 0.657724 5:-1367688 MsG0580024152.01.T01:CDS
GAGATCAGTAGAAAGAACAC+TGG 0.658551 5:+1367612 None:intergenic
GCAAGAGTTCAAGCAGAATG+GGG 0.660328 5:-1370441 MsG0580024152.01.T01:CDS
TTGGGAACTCTACACCAGCA+AGG 0.679749 5:-1368007 MsG0580024152.01.T01:CDS
CACATGTGTTGTGAAACAAG+TGG 0.736637 5:-1367800 MsG0580024152.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTCAAATAAATAAGTA+TGG + Chr5:1368141-1368160 None:intergenic 10.0%
!! ATAATAAAGTTTAATCCTTT+GGG - Chr5:1368958-1368977 MsG0580024152.01.T01:intron 15.0%
!! GATATATTTCTTTAATCAAA+GGG + Chr5:1368329-1368348 None:intergenic 15.0%
!! GTAAATATAGTTTAACAAAA+AGG + Chr5:1368869-1368888 None:intergenic 15.0%
!! TGATATATTTCTTTAATCAA+AGG + Chr5:1368330-1368349 None:intergenic 15.0%
!!! ATTGAATATTTTATGTCAAA+AGG + Chr5:1367682-1367701 None:intergenic 15.0%
!!! TTATATTTTGTGTAAAAACT+AGG + Chr5:1367991-1368010 None:intergenic 15.0%
!!! TTATTTTATCTTGGTTAATT+TGG + Chr5:1369829-1369848 None:intergenic 15.0%
!!! TTGAATATTTTATGTCAAAA+GGG + Chr5:1367681-1367700 None:intergenic 15.0%
!! AAAAGAAAAAGTAGAGTTAA+AGG + Chr5:1369756-1369775 None:intergenic 20.0%
!! AATACAGAGAAAAAAATTCA+TGG - Chr5:1369129-1369148 MsG0580024152.01.T01:intron 20.0%
!! AATAGTAATAGAACTATCTT+TGG - Chr5:1367874-1367893 MsG0580024152.01.T01:CDS 20.0%
!! AGTTCTATTACTATTATATC+AGG + Chr5:1367869-1367888 None:intergenic 20.0%
!! ATAAGACAAACTTATATAGT+AGG - Chr5:1369444-1369463 MsG0580024152.01.T01:intron 20.0%
!! ATAGTAATAGAACTATCTTT+GGG - Chr5:1367875-1367894 MsG0580024152.01.T01:CDS 20.0%
!! ATCTAAACACACATTTAAAA+AGG + Chr5:1368727-1368746 None:intergenic 20.0%
!! CACAAAAATATTCCAAAAAT+AGG + Chr5:1368501-1368520 None:intergenic 20.0%
!! CATAATAAAGTTTAATCCTT+TGG - Chr5:1368957-1368976 MsG0580024152.01.T01:intron 20.0%
!! GAAGATTTAATATTTCTTTC+AGG - Chr5:1368915-1368934 MsG0580024152.01.T01:intron 20.0%
!! GGATTAAACTTTATTATGAA+AGG + Chr5:1368955-1368974 None:intergenic 20.0%
!! GTTAAACTATATTTACACTT+TGG - Chr5:1368873-1368892 MsG0580024152.01.T01:intron 20.0%
!! TTGTAAATAATTAACCAATC+TGG - Chr5:1368663-1368682 MsG0580024152.01.T01:intron 20.0%
!!! AAAATGCTTTCAATTTTACA+TGG - Chr5:1368610-1368629 MsG0580024152.01.T01:intron 20.0%
!!! CTATATAAGTTTGTCTTATT+TGG + Chr5:1369443-1369462 None:intergenic 20.0%
!!! CTATTTTTGGAATATTTTTG+TGG - Chr5:1368499-1368518 MsG0580024152.01.T01:intron 20.0%
!!! CTTGTGTTTTTATTTTATCT+TGG + Chr5:1369838-1369857 None:intergenic 20.0%
!!! TGAATATTTTATGTCAAAAG+GGG + Chr5:1367680-1367699 None:intergenic 20.0%
! AACACATAATAGTCCAAAAA+AGG + Chr5:1368645-1368664 None:intergenic 25.0%
! AAGGAATGATACAAAATGTA+TGG + Chr5:1368037-1368056 None:intergenic 25.0%
! AAGTTGCATGCTTAATTTAA+TGG + Chr5:1368423-1368442 None:intergenic 25.0%
! AGGAAATATTTGTTCATGAA+AGG - Chr5:1370389-1370408 MsG0580024152.01.T01:intron 25.0%
! ATAAATAAGTATGGAGAAGT+TGG + Chr5:1368132-1368151 None:intergenic 25.0%
! CTCTAAATTTGTGATGATAT+AGG + Chr5:1369228-1369247 None:intergenic 25.0%
! TAAATCAATTCTCTCTTCTT+TGG + Chr5:1369931-1369950 None:intergenic 25.0%
! TAAATTTGTGATGATATAGG+TGG + Chr5:1369225-1369244 None:intergenic 25.0%
! TAACTCTGTAGGTATTATAT+GGG - Chr5:1369483-1369502 MsG0580024152.01.T01:intron 25.0%
!!! AACTTTAGAATTAAGAGATG+TGG + Chr5:1367956-1367975 None:intergenic 25.0%
!!! AATATTTTAGTCTGATAGTG+TGG - Chr5:1367744-1367763 MsG0580024152.01.T01:CDS 25.0%
!!! ATGGTTTTATGTACCTTTTT+TGG - Chr5:1368629-1368648 MsG0580024152.01.T01:intron 25.0%
!!! CTATAAGATTATAGCTTTGT+AGG - Chr5:1367778-1367797 MsG0580024152.01.T01:CDS 25.0%
!!! TATTTTTAAATCCACTTGCA+GGG + Chr5:1367815-1367834 None:intergenic 25.0%
AACCTATATAGTAACTCTGT+AGG - Chr5:1369472-1369491 MsG0580024152.01.T01:intron 30.0%
AACTCTGTAGGTATTATATG+GGG - Chr5:1369484-1369503 MsG0580024152.01.T01:intron 30.0%
ACTTGAATATAACATGTTGC+TGG - Chr5:1368782-1368801 MsG0580024152.01.T01:intron 30.0%
ATATAGCTACCAAGTTTCTA+TGG - Chr5:1370087-1370106 MsG0580024152.01.T01:intron 30.0%
ATTGATATTCAAGTCAACCA+TGG - Chr5:1369656-1369675 MsG0580024152.01.T01:intron 30.0%
GCTATAATCTTATAGCTATG+CGG + Chr5:1367773-1367792 None:intergenic 30.0%
GGTATACTATTGCTGAAAAT+GGG - Chr5:1368296-1368315 MsG0580024152.01.T01:intron 30.0%
GTAACTCTGTAGGTATTATA+TGG - Chr5:1369482-1369501 MsG0580024152.01.T01:intron 30.0%
TACCTACAGAGTTACTATAT+AGG + Chr5:1369477-1369496 None:intergenic 30.0%
TATACAACAATTAGTCCCAA+AGG + Chr5:1368976-1368995 None:intergenic 30.0%
TATAGGTATTTCACAGAATC+TGG - Chr5:1368275-1368294 MsG0580024152.01.T01:intron 30.0%
TCCTCTTTAAACCTGAATAT+TGG + Chr5:1368183-1368202 None:intergenic 30.0%
TGGTATACTATTGCTGAAAA+TGG - Chr5:1368295-1368314 MsG0580024152.01.T01:intron 30.0%
! ATCATCACAAATTTAGAGCA+TGG - Chr5:1369230-1369249 MsG0580024152.01.T01:intron 30.0%
! TCCAATATTCAGGTTTAAAG+AGG - Chr5:1368179-1368198 MsG0580024152.01.T01:intron 30.0%
! TTATGTTGCTTCCAATATTC+AGG - Chr5:1368169-1368188 MsG0580024152.01.T01:intron 30.0%
! TTTACACTTCACAGCTATTT+TGG + Chr5:1367726-1367745 None:intergenic 30.0%
!! ATGTTCTAGGCTCTAAATAT+TGG - Chr5:1370210-1370229 MsG0580024152.01.T01:intron 30.0%
!! CACTTGTTTCTTTCTGTTTT+TGG + Chr5:1369869-1369888 None:intergenic 30.0%
!! GTATTTTTAAATCCACTTGC+AGG + Chr5:1367816-1367835 None:intergenic 30.0%
!! TGAACAGCAGGATTTTAATA+AGG - Chr5:1369619-1369638 MsG0580024152.01.T01:intron 30.0%
!! TGTTCTAGGCTCTAAATATT+GGG - Chr5:1370211-1370230 MsG0580024152.01.T01:intron 30.0%
!!! AGTTGCATTTTTCAAGCAAT+AGG - Chr5:1368450-1368469 MsG0580024152.01.T01:intron 30.0%
!!! GCCTTAAAGTGTTGAATTTT+GGG + Chr5:1369804-1369823 None:intergenic 30.0%
!!! TGCCTTAAAGTGTTGAATTT+TGG + Chr5:1369805-1369824 None:intergenic 30.0%
AAACTAATACACCACTTGCA+AGG + Chr5:1367844-1367863 None:intergenic 35.0%
AAAGTGAATGACAAGTGAAG+AGG - Chr5:1367633-1367652 MsG0580024152.01.T01:CDS 35.0%
AAATACAAAAGCCTTGCAAG+TGG - Chr5:1367830-1367849 MsG0580024152.01.T01:CDS 35.0%
AAGCAAGAAAAGGGAAGTAA+GGG + Chr5:1369711-1369730 None:intergenic 35.0%
AATATAACATGTTGCTGGTG+TGG - Chr5:1368787-1368806 MsG0580024152.01.T01:intron 35.0%
AATTAAGAGATGTGGAGTGA+AGG + Chr5:1367948-1367967 None:intergenic 35.0%
AGAAGGAATCAAGCAAGAAA+AGG + Chr5:1369721-1369740 None:intergenic 35.0%
AGGTTTAAAGAGGAGATAAC+AGG - Chr5:1368189-1368208 MsG0580024152.01.T01:intron 35.0%
ATCAAGGTCAGAAAGTTGAA+GGG + Chr5:1369973-1369992 None:intergenic 35.0%
ATTCTGTGAGTTGTCTTACT+TGG - Chr5:1370280-1370299 MsG0580024152.01.T01:intron 35.0%
CTCTAAATATTGGGGTAAAG+GGG - Chr5:1370220-1370239 MsG0580024152.01.T01:intron 35.0%
CTGCTCAATAACTAATAGAC+TGG - Chr5:1368822-1368841 MsG0580024152.01.T01:intron 35.0%
CTTGAAAAATGCAACTAGCA+AGG + Chr5:1368446-1368465 None:intergenic 35.0%
GAAGGAATCAAGCAAGAAAA+GGG + Chr5:1369720-1369739 None:intergenic 35.0%
GCATCAATGATCATGCAATT+GGG - Chr5:1370123-1370142 MsG0580024152.01.T01:intron 35.0%
GCCCAAAATTCAACACTTTA+AGG - Chr5:1369800-1369819 MsG0580024152.01.T01:CDS 35.0%
GGGAAGGATTATTTATCAAG+TGG - Chr5:1369504-1369523 MsG0580024152.01.T01:intron 35.0%
GTATCATTCCTTCCAAAAAG+TGG - Chr5:1368045-1368064 MsG0580024152.01.T01:CDS 35.0%
TAGAGTTAAAGGAAGTTGCA+CGG + Chr5:1369745-1369764 None:intergenic 35.0%
TCTTGGACAACACTAAATTC+TGG + Chr5:1368237-1368256 None:intergenic 35.0%
TGCATCAATGATCATGCAAT+TGG - Chr5:1370122-1370141 MsG0580024152.01.T01:intron 35.0%
TGTTGATCTATATCCTCCAA+TGG - Chr5:1369198-1369217 MsG0580024152.01.T01:intron 35.0%
TGTTGTGAAACAAGTGGTTA+AGG - Chr5:1370253-1370272 MsG0580024152.01.T01:intron 35.0%
TTGGGCTATTTATAGAGTCT+TGG + Chr5:1369786-1369805 None:intergenic 35.0%
TTGTTCCTAGATTTATCACC+AGG + Chr5:1370173-1370192 None:intergenic 35.0%
! ACTTTGCAAAGAGAGTATGA+AGG - Chr5:1369313-1369332 MsG0580024152.01.T01:intron 35.0%
! CTTTGCAAAGAGAGTATGAA+GGG - Chr5:1369314-1369333 MsG0580024152.01.T01:intron 35.0%
! GAAAGAAACAAGTGTTGTGA+TGG - Chr5:1369875-1369894 MsG0580024152.01.T01:intron 35.0%
! GCTCTAAATATTGGGGTAAA+GGG - Chr5:1370219-1370238 MsG0580024152.01.T01:intron 35.0%
! TAGTTGATGTGGAAAATGCT+GGG - Chr5:1370318-1370337 MsG0580024152.01.T01:intron 35.0%
! TTAGTTCTCAAAGCAAGTGA+AGG + Chr5:1367906-1367925 None:intergenic 35.0%
! TTAGTTGATGTGGAAAATGC+TGG - Chr5:1370317-1370336 MsG0580024152.01.T01:intron 35.0%
!! GTTCTAGGCTCTAAATATTG+GGG - Chr5:1370212-1370231 MsG0580024152.01.T01:intron 35.0%
!!! AATAGGCTTTTTTGCTTGTG+GGG - Chr5:1368467-1368486 MsG0580024152.01.T01:intron 35.0%
!!! ATCAAATAAGCGCCACTTTT+TGG + Chr5:1368060-1368079 None:intergenic 35.0%
!!! CAATAGGCTTTTTTGCTTGT+GGG - Chr5:1368466-1368485 MsG0580024152.01.T01:intron 35.0%
AAGGGAAGTAAGGGATTTCA+AGG + Chr5:1369702-1369721 None:intergenic 40.0%
ACATCCACTTGCAATTGCAA+TGG + Chr5:1369547-1369566 None:intergenic 40.0%
ACCACCAGAATTGATTGTGA+GGG - Chr5:1368544-1368563 MsG0580024152.01.T01:intron 40.0%
AGCTGTGTAAACCTATGGAT+TGG - Chr5:1369050-1369069 MsG0580024152.01.T01:intron 40.0%
AGGAACAAATGTGCAGAACT+TGG - Chr5:1370185-1370204 MsG0580024152.01.T01:intron 40.0%
AGGTTTACACAGCTAACTCA+TGG + Chr5:1369044-1369063 None:intergenic 40.0%
ATATTCAAGTCAACCATGGC+AGG - Chr5:1369660-1369679 MsG0580024152.01.T01:intron 40.0%
ATTCTCTCTTCTTTGGCACA+TGG + Chr5:1369924-1369943 None:intergenic 40.0%
CAAACCATTGCAATTGCAAG+TGG - Chr5:1369540-1369559 MsG0580024152.01.T01:intron 40.0%
CAAGCAAGAAAAGGGAAGTA+AGG + Chr5:1369712-1369731 None:intergenic 40.0%
CACATGTGTTGTGAAACAAG+TGG - Chr5:1370247-1370266 MsG0580024152.01.T01:intron 40.0%
CACTTGTTTCACAACACATG+TGG + Chr5:1370249-1370268 None:intergenic 40.0%
CAGGAAATGAAACGATTGAC+TGG - Chr5:1368208-1368227 MsG0580024152.01.T01:intron 40.0%
CATCAAGGTCAGAAAGTTGA+AGG + Chr5:1369974-1369993 None:intergenic 40.0%
CTGTAGGTATTATATGGGGA+AGG - Chr5:1369488-1369507 MsG0580024152.01.T01:intron 40.0%
GAGATCAGTAGAAAGAACAC+TGG + Chr5:1370438-1370457 None:intergenic 40.0%
GAGTTAGCTGTGTAAACCTA+TGG - Chr5:1369045-1369064 MsG0580024152.01.T01:intron 40.0%
GATGGAATGCACTTCAACAA+AGG - Chr5:1369395-1369414 MsG0580024152.01.T01:intron 40.0%
GCTGGTATGCTTGATACTAT+AGG - Chr5:1368258-1368277 MsG0580024152.01.T01:intron 40.0%
GCTTGCATTCTATTCCAGAT+TGG + Chr5:1368680-1368699 None:intergenic 40.0%
GGTTTACACAGCTAACTCAT+GGG + Chr5:1369043-1369062 None:intergenic 40.0%
GTGAGTTGTCTTACTTGGAA+AGG - Chr5:1370285-1370304 MsG0580024152.01.T01:intron 40.0%
GTGGACAACTGATGAAAAAG+TGG - Chr5:1370004-1370023 MsG0580024152.01.T01:intron 40.0%
GTTCACCTGGTGATAAATCT+AGG - Chr5:1370165-1370184 MsG0580024152.01.T01:intron 40.0%
TATACTGCCAGCATGATCAA+TGG + Chr5:1368572-1368591 None:intergenic 40.0%
TATCAAGCATACCAGCATCT+TGG + Chr5:1368254-1368273 None:intergenic 40.0%
TGATGATATAGGTGGTCCAT+TGG + Chr5:1369217-1369236 None:intergenic 40.0%
TGCAATTTCATGCCTCTTCT+TGG + Chr5:1369079-1369098 None:intergenic 40.0%
TGCTTTGCACCATAGAAACT+TGG + Chr5:1370099-1370118 None:intergenic 40.0%
TGGAGAAGTTGGAAACAAAG+TGG + Chr5:1368121-1368140 None:intergenic 40.0%
TTTAGTGTTGTCCAAGATGC+TGG - Chr5:1368240-1368259 MsG0580024152.01.T01:intron 40.0%
TTTATCACCAGGTGAACTTG+AGG + Chr5:1370162-1370181 None:intergenic 40.0%
TTTATTCGCGTTTGAACAGC+AGG - Chr5:1369607-1369626 MsG0580024152.01.T01:intron 40.0%
! AAAGCTGGTTTCCAAAAGGA+GGG - Chr5:1370359-1370378 MsG0580024152.01.T01:intron 40.0%
! AATTCTGGTGGTGATAACAC+TGG + Chr5:1368536-1368555 None:intergenic 40.0%
! ATCCCAAAGAGAGAGTATGA+AGG - Chr5:1369357-1369376 MsG0580024152.01.T01:intron 40.0%
! GCTTGAAGCTTTAGTTGATG+TGG - Chr5:1370307-1370326 MsG0580024152.01.T01:intron 40.0%
! TCCCAAAGAGAGAGTATGAA+GGG - Chr5:1369358-1369377 MsG0580024152.01.T01:intron 40.0%
! TTCTGACCTTGATGATCTCA+TGG - Chr5:1369980-1369999 MsG0580024152.01.T01:intron 40.0%
!! GCAGGATTTTAATAAGGCTG+TGG - Chr5:1369625-1369644 MsG0580024152.01.T01:intron 40.0%
!! GGCTCTAAATATTGGGGTAA+AGG - Chr5:1370218-1370237 MsG0580024152.01.T01:intron 40.0%
!! TCATACTCTCTCTTTGGGAT+AGG + Chr5:1369357-1369376 None:intergenic 40.0%
!!! AATAAGCGCCACTTTTTGGA+AGG + Chr5:1368056-1368075 None:intergenic 40.0%
!!! GCAATAGGCTTTTTTGCTTG+TGG - Chr5:1368465-1368484 MsG0580024152.01.T01:intron 40.0%
!!! TTTTTTTGTGCCTGTGTTGC+TGG - Chr5:1368999-1369018 MsG0580024152.01.T01:intron 40.0%
AAAGGAAGTTGCACGGAAGA+AGG + Chr5:1369738-1369757 None:intergenic 45.0%
AAGTGGCCAAATTCTGCTCT+TGG - Chr5:1370021-1370040 MsG0580024152.01.T01:intron 45.0%
AGCCCTTCATACTCTCTCTT+TGG + Chr5:1369363-1369382 None:intergenic 45.0%
AGTGGCCAAATTCTGCTCTT+GGG - Chr5:1370022-1370041 MsG0580024152.01.T01:intron 45.0%
CACCACCAGAATTGATTGTG+AGG - Chr5:1368543-1368562 MsG0580024152.01.T01:intron 45.0%
CTTCTTGGTCTCCAATCCAT+AGG + Chr5:1369064-1369083 None:intergenic 45.0%
GAGTTCCCAAGAGCAGAATT+TGG + Chr5:1370030-1370049 None:intergenic 45.0%
GCAAGAGTTCAAGCAGAATG+GGG - Chr5:1367606-1367625 MsG0580024152.01.T01:CDS 45.0%
GCAGAACTTGGCTATGTTCT+AGG - Chr5:1370197-1370216 MsG0580024152.01.T01:intron 45.0%
GCCCTTCATACTCTCTCTTT+GGG + Chr5:1369362-1369381 None:intergenic 45.0%
GGCAAGAGTTCAAGCAGAAT+GGG - Chr5:1367605-1367624 MsG0580024152.01.T01:CDS 45.0%
GGTTCCCTCACAATCAATTC+TGG + Chr5:1368551-1368570 None:intergenic 45.0%
TAACACAAATGCCCTGCAAG+TGG - Chr5:1367801-1367820 MsG0580024152.01.T01:CDS 45.0%
TCCAAAAGGAGGGAGTTCTA+AGG - Chr5:1370369-1370388 MsG0580024152.01.T01:intron 45.0%
TCCACACCATGAGATCATCA+AGG + Chr5:1369989-1370008 None:intergenic 45.0%
TCCCTCACAATCAATTCTGG+TGG + Chr5:1368548-1368567 None:intergenic 45.0%
TCTCTATCCTCAAGTTCACC+TGG - Chr5:1370152-1370171 MsG0580024152.01.T01:intron 45.0%
TGATATAGGTGGTCCATTGG+AGG + Chr5:1369214-1369233 None:intergenic 45.0%
TGGCAAGAGTTCAAGCAGAA+TGG - Chr5:1367604-1367623 MsG0580024152.01.T01:CDS 45.0%
! ACCTTGATGATCTCATGGTG+TGG - Chr5:1369985-1370004 MsG0580024152.01.T01:intron 45.0%
! GAAAGCTGGTTTCCAAAAGG+AGG - Chr5:1370358-1370377 MsG0580024152.01.T01:intron 45.0%
! GGAGAAAGCTGGTTTCCAAA+AGG - Chr5:1370355-1370374 MsG0580024152.01.T01:intron 45.0%
! GGGGATGAGTTGCCTATTTT+TGG - Chr5:1368486-1368505 MsG0580024152.01.T01:intron 45.0%
! TCCTTAGAACTCCCTCCTTT+TGG + Chr5:1370373-1370392 None:intergenic 45.0%
! TGGTGGTGATAACACTGGTT+GGG + Chr5:1368531-1368550 None:intergenic 45.0%
!! ATGGATTGGAGACCAAGAAG+AGG - Chr5:1369064-1369083 MsG0580024152.01.T01:intron 45.0%
AAGGGCTCGGAGTGTGATTT+GGG + Chr5:1369955-1369974 None:intergenic 50.0%
ATTCATGTCTCTGCCTGCCA+TGG + Chr5:1369676-1369695 None:intergenic 50.0%
CTCTACACCAGCAAGGATGA+TGG - Chr5:1370047-1370066 MsG0580024152.01.T01:intron 50.0%
GAGGGAACCATTGATCATGC+TGG - Chr5:1368562-1368581 MsG0580024152.01.T01:intron 50.0%
GAGTTCAAGCAGAATGGGGA+AGG - Chr5:1367610-1367629 MsG0580024152.01.T01:CDS 50.0%
GGTCAGAAAGTTGAAGGGCT+CGG + Chr5:1369968-1369987 None:intergenic 50.0%
GTTGATGCCATCATCCTTGC+TGG + Chr5:1370057-1370076 None:intergenic 50.0%
TTGGGAACTCTACACCAGCA+AGG - Chr5:1370040-1370059 MsG0580024152.01.T01:intron 50.0%
! CTGGTGGTGATAACACTGGT+TGG + Chr5:1368532-1368551 None:intergenic 50.0%
! GGTGATAACACTGGTTGGGA+AGG + Chr5:1368527-1368546 None:intergenic 50.0%
!! ATGAAGGGCTCTGAGCACAA+GGG - Chr5:1369373-1369392 MsG0580024152.01.T01:intron 50.0%
!! CAAAGAGTGCTGGAGAAAGC+TGG - Chr5:1370344-1370363 MsG0580024152.01.T01:intron 50.0%
!! TATGAAGGGCTCTGAGCACA+AGG - Chr5:1369372-1369391 MsG0580024152.01.T01:intron 50.0%
AGCAACCACACCAGCAACAC+AGG + Chr5:1369012-1369031 None:intergenic 55.0%
GAAGGGCTCGGAGTGTGATT+TGG + Chr5:1369956-1369975 None:intergenic 55.0%
GTTGCTGGTGTGGTTGCTTC+AGG - Chr5:1368797-1368816 MsG0580024152.01.T01:intron 55.0%
! TGCTGGGTCTCAAAGAGTGC+TGG - Chr5:1370334-1370353 MsG0580024152.01.T01:intron 55.0%
! TTGTGCCTGTGTTGCTGGTG+TGG - Chr5:1369004-1369023 MsG0580024152.01.T01:intron 55.0%
!! AGGGCTCTGAGCACAAGGGA+TGG - Chr5:1369377-1369396 MsG0580024152.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 1367603 1370466 1367603 ID=MsG0580024152.01;Name=MsG0580024152.01
Chr5 mRNA 1367603 1370466 1367603 ID=MsG0580024152.01.T01;Parent=MsG0580024152.01;Name=MsG0580024152.01.T01;_AED=0.43;_eAED=0.62;_QI=0|0|0|1|1|1|4|0|266
Chr5 exon 1370423 1370466 1370423 ID=MsG0580024152.01.T01:exon:452;Parent=MsG0580024152.01.T01
Chr5 exon 1369773 1369878 1369773 ID=MsG0580024152.01.T01:exon:451;Parent=MsG0580024152.01.T01
Chr5 exon 1368326 1368443 1368326 ID=MsG0580024152.01.T01:exon:450;Parent=MsG0580024152.01.T01
Chr5 exon 1367603 1368135 1367603 ID=MsG0580024152.01.T01:exon:449;Parent=MsG0580024152.01.T01
Chr5 CDS 1370423 1370466 1370423 ID=MsG0580024152.01.T01:cds;Parent=MsG0580024152.01.T01
Chr5 CDS 1369773 1369878 1369773 ID=MsG0580024152.01.T01:cds;Parent=MsG0580024152.01.T01
Chr5 CDS 1368326 1368443 1368326 ID=MsG0580024152.01.T01:cds;Parent=MsG0580024152.01.T01
Chr5 CDS 1367603 1368135 1367603 ID=MsG0580024152.01.T01:cds;Parent=MsG0580024152.01.T01
Gene Sequence

>MsG0580024152.01.T01

ATGGCAAGAGTTCAAGCAGAATGGGGAAGGAAAGTGAATGACAAGTTTAAAGAGGAGATAACAGGAAATGAAACGATTGACTGGAGTCCAGAATTTAGTGTTGTCCAAGATGCTGGTATGCTTGATACTATAGGTATTTCACAGAATCTGCAGGATTTTAATAAGGCTGTGGTTAAGATTATTGATATTCAAGTCAACCATGGCAGGCAGAGACATGAATCAACCTTGAAATCCCTTACTTCCCTTTTCTTGCTTGATTCCTTCTTCCAAGAGAGAATTGATTTAACCCAAATCACACTCCGAGCCCTTCAACTTTCTGACCTTGATGATCTCATGGTGTGGACAACTGATGAAAAAGTGGCCAAATTCTGCTCTTGGGAACTCTACACCAGCAAGGATGATGGCATCAACTTCATTGAAAATATAGCTACCAAGTTTCTATGGTGCAAAGCAATATGCATCAATGATCATGCAATTGGGTGTGTTTCTCTATCCTCAAGTTCACCTGGTGATAAATCTAGGAACAAATGTGCAGAACTTGGCTATGTTCTAGGCTCTAAATATTGGGGTAAAGGGGTTGCCACATGTGTTGTGAAACAAGTGGTTAAGGTTGCATTCTGTGAGTTGTCTTACTTGGAAAGGCTTGAAGCTTTAGTTGATGTGGAAAATGCTGGGTCTCAAAGAGTGCTGGAGAAAGCTGGTTTCCAAAAGGAGGGAGTTCTAAGGAAATATTTGTTCATGAAAGGAAAAAGTAGAGATATGATCATGTCCAGTGTTCTTTCTACTGATCTCCAACTATAA
Protein sequence

>MsG0580024152.01.T01

MARVQAEWGRKVNDKFKEEITGNETIDWSPEFSVVQDAGMLDTIGISQNLQDFNKAVVKIIDIQVNHGRQRHESTLKSLTSLFLLDSFFQERIDLTQITLRALQLSDLDDLMVWTTDEKVAKFCSWELYTSKDDGINFIENIATKFLWCKAICINDHAIGCVSLSSSSPGDKSRNKCAELGYVLGSKYWGKGVATCVVKQVVKVAFCELSYLERLEALVDVENAGSQRVLEKAGFQKEGVLRKYLFMKGKSRDMIMSSVLSTDLQL*