Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024474.01.T01 | RHN53703.1 | 95.259 | 232 | 10 | 1 | 2 | 233 | 49 | 279 | 4.92E-160 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024474.01.T01 | A0A396HMN4 | 95.259 | 232 | 10 | 1 | 2 | 233 | 49 | 279 | 2.35e-160 | 454 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001795.01 | MsG0580024474.01 | 0.850131 | 2.069712e-60 | 4.013461e-57 |
| MsG0180003128.01 | MsG0580024474.01 | 0.827311 | 1.677605e-54 | 1.613686e-51 |
| MsG0180003129.01 | MsG0580024474.01 | 0.814121 | 1.810295e-51 | 1.204278e-48 |
| MsG0280010942.01 | MsG0580024474.01 | 0.800972 | 1.121275e-48 | 5.292522e-46 |
| MsG0380013071.01 | MsG0580024474.01 | 0.803873 | 2.831155e-49 | 1.438805e-46 |
| MsG0380014920.01 | MsG0580024474.01 | 0.804441 | 2.157570e-49 | 1.112495e-46 |
| MsG0480021249.01 | MsG0580024474.01 | 0.848309 | 6.655660e-60 | 1.216340e-56 |
| MsG0580024474.01 | MsG0580024476.01 | 0.835554 | 1.568023e-56 | 1.924042e-53 |
| MsG0580024474.01 | MsG0580029256.01 | 0.839293 | 1.728117e-57 | 2.375762e-54 |
| MsG0580024474.01 | MsG0580029642.01 | 0.841503 | 4.567379e-58 | 6.724948e-55 |
| MsG0580024474.01 | MsG0880042368.01 | 0.815073 | 1.114271e-51 | 7.605706e-49 |
| MsG0580024474.01 | MsG0880046472.01 | 0.837215 | 5.928968e-57 | 7.648138e-54 |
| MsG0380016315.01 | MsG0580024474.01 | -0.855654 | 5.455654e-62 | 1.268691e-58 |
| MsG0380017254.01 | MsG0580024474.01 | 0.834411 | 3.044929e-56 | 3.610715e-53 |
| MsG0480018187.01 | MsG0580024474.01 | 0.867341 | 1.469505e-65 | 5.113293e-62 |
| MsG0280007915.01 | MsG0580024474.01 | 0.830965 | 2.181342e-55 | 2.334204e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024474.01.T01 | MTR_5g011800 | 96.087 | 230 | 8 | 1 | 4 | 233 | 1 | 229 | 1.40e-163 | 451 |
| MsG0580024474.01.T01 | MTR_5g011820 | 90.129 | 233 | 22 | 1 | 1 | 233 | 1 | 232 | 2.24e-154 | 428 |
| MsG0580024474.01.T01 | MTR_4g102220 | 58.898 | 236 | 80 | 6 | 4 | 233 | 1 | 225 | 9.91e-80 | 239 |
| MsG0580024474.01.T01 | MTR_4g024370 | 51.055 | 237 | 104 | 5 | 4 | 233 | 1 | 232 | 5.18e-74 | 224 |
| MsG0580024474.01.T01 | MTR_4g024370 | 51.055 | 237 | 104 | 5 | 4 | 233 | 1 | 232 | 5.18e-74 | 224 |
| MsG0580024474.01.T01 | MTR_6g060390 | 29.130 | 230 | 137 | 9 | 8 | 232 | 4 | 212 | 2.43e-22 | 91.7 |
| MsG0580024474.01.T01 | MTR_6g060440 | 29.565 | 230 | 134 | 10 | 8 | 232 | 4 | 210 | 1.51e-21 | 89.4 |
| MsG0580024474.01.T01 | MTR_7g117380 | 28.384 | 229 | 150 | 7 | 8 | 232 | 3 | 221 | 3.87e-19 | 83.2 |
| MsG0580024474.01.T01 | MTR_1g076800 | 25.764 | 229 | 147 | 8 | 7 | 232 | 3 | 211 | 6.86e-19 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024474.01.T01 | AT2G45360 | 52.381 | 231 | 93 | 5 | 4 | 233 | 1 | 215 | 1.13e-72 | 220 |
| MsG0580024474.01.T01 | AT3G60780 | 50.215 | 233 | 98 | 6 | 4 | 233 | 1 | 218 | 2.07e-69 | 212 |
| MsG0580024474.01.T01 | AT1G62840 | 47.303 | 241 | 99 | 8 | 4 | 233 | 1 | 224 | 1.17e-54 | 175 |
| MsG0580024474.01.T01 | AT1G12320 | 43.290 | 231 | 103 | 7 | 4 | 229 | 1 | 208 | 2.41e-45 | 150 |
Find 66 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGGGATGTTCACTTTATT+AGG | 0.233385 | 5:-5409758 | MsG0580024474.01.T01:CDS |
| TTTATTTCTAAGATGGATTC+TGG | 0.260989 | 5:-5409969 | MsG0580024474.01.T01:CDS |
| TATGAGTTAGTTGCTCTCTC+TGG | 0.291619 | 5:+5410404 | None:intergenic |
| TTTGATTGGAATAGATTTCT+TGG | 0.340143 | 5:-5410084 | MsG0580024474.01.T01:CDS |
| ATGGCGGAGCGTGGTGGCGC+GGG | 0.351116 | 5:-5409940 | MsG0580024474.01.T01:CDS |
| AGATGGATTCTGGTTATATA+TGG | 0.373750 | 5:-5409959 | MsG0580024474.01.T01:CDS |
| TGGTATGTCACCGGAAGTTT+TGG | 0.390155 | 5:-5410135 | MsG0580024474.01.T01:CDS |
| ATTTCTTGGTTGTTGATTCT+CGG | 0.396616 | 5:-5410070 | MsG0580024474.01.T01:CDS |
| TGAAAGACATGAAACTTGTT+TGG | 0.407611 | 5:-5410430 | MsG0580024474.01.T01:CDS |
| AGCACGTCCCTTATGCTTCA+TGG | 0.413780 | 5:+5409818 | None:intergenic |
| TGTTCGGTCAGTATTTCTTC+CGG | 0.416161 | 5:-5409904 | MsG0580024474.01.T01:CDS |
| GAAGTGATGGATGGTTTGAT+TGG | 0.429509 | 5:-5410098 | MsG0580024474.01.T01:CDS |
| ATGAGTTAGTTGCTCTCTCT+GGG | 0.435811 | 5:+5410405 | None:intergenic |
| AAGCATGTTGATCAACGATC+AGG | 0.439670 | 5:-5409777 | MsG0580024474.01.T01:CDS |
| TCCGATCTTGACCGTTCATC+AGG | 0.440907 | 5:+5410182 | None:intergenic |
| GGTTCTCCCACCAAAACTTC+CGG | 0.450365 | 5:+5410125 | None:intergenic |
| AGAATCCGGTGCGGCGGAGC+TGG | 0.456364 | 5:-5410336 | MsG0580024474.01.T01:CDS |
| TGGATAAACCAACACTCGTT+GGG | 0.457594 | 5:+5410246 | None:intergenic |
| GGGGATCACGACGACTTGTT+CGG | 0.470863 | 5:-5409920 | MsG0580024474.01.T01:CDS |
| ACCTGTGTGACCGCTTGCTA+TGG | 0.473046 | 5:+5410226 | None:intergenic |
| TTCTCTAGGAAGGTGATTGA+TGG | 0.483897 | 5:+5410355 | None:intergenic |
| GGCGGAGCTGGTATCATCTA+TGG | 0.484116 | 5:-5410324 | MsG0580024474.01.T01:CDS |
| AATCACCTTCCTAGAGAATC+CGG | 0.490375 | 5:-5410350 | MsG0580024474.01.T01:CDS |
| AAGGTGATTGATGGTAGTTA+TGG | 0.490442 | 5:+5410364 | None:intergenic |
| GACGTGCTGTTCATAATAGA+TGG | 0.491292 | 5:-5409803 | MsG0580024474.01.T01:CDS |
| TGTTACGGCCATGAAGCATA+AGG | 0.493546 | 5:-5409826 | MsG0580024474.01.T01:CDS |
| TGGCGGAGCGTGGTGGCGCG+GGG | 0.493800 | 5:-5409939 | MsG0580024474.01.T01:CDS |
| AGTATTTCTTCCGGTGGGAA+AGG | 0.497245 | 5:-5409895 | MsG0580024474.01.T01:CDS |
| TGGTGGTGACAACTCTGTTA+CGG | 0.498458 | 5:-5409841 | MsG0580024474.01.T01:CDS |
| TTAGCAAAGTTGAGTGGTAA+AGG | 0.503228 | 5:-5410020 | MsG0580024474.01.T01:CDS |
| GTATTTCTTCCGGTGGGAAA+GGG | 0.503243 | 5:-5409894 | MsG0580024474.01.T01:CDS |
| TATGGCGGAGCGTGGTGGCG+CGG | 0.506489 | 5:-5409941 | MsG0580024474.01.T01:CDS |
| AAACCATCCATCACTTCCTC+CGG | 0.520767 | 5:+5410104 | None:intergenic |
| CTGGTATCATCTATGGCAGC+AGG | 0.522629 | 5:-5410317 | MsG0580024474.01.T01:CDS |
| AACAGAGTTGTCACCACCAC+CGG | 0.522950 | 5:+5409845 | None:intergenic |
| GGTGGGAAAGGGAATTCATA+TGG | 0.529266 | 5:-5409883 | MsG0580024474.01.T01:CDS |
| GTTACGGCCATGAAGCATAA+GGG | 0.544486 | 5:-5409825 | MsG0580024474.01.T01:CDS |
| TCCTGATGAACGGTCAAGAT+CGG | 0.549497 | 5:-5410183 | MsG0580024474.01.T01:CDS |
| GGGAGAACCGGAGGAAGTGA+TGG | 0.550221 | 5:-5410111 | MsG0580024474.01.T01:CDS |
| TGATACCAGCTCCGCCGCAC+CGG | 0.550329 | 5:+5410331 | None:intergenic |
| ATGGATAAACCAACACTCGT+TGG | 0.556717 | 5:+5410245 | None:intergenic |
| TCGGTCAGTATTTCTTCCGG+TGG | 0.561365 | 5:-5409901 | MsG0580024474.01.T01:CDS |
| AGCATGTTGATCAACGATCA+GGG | 0.563826 | 5:-5409776 | MsG0580024474.01.T01:CDS |
| TCCTAGAGAATCCGGTGCGG+CGG | 0.565345 | 5:-5410342 | MsG0580024474.01.T01:CDS |
| GGAGTTATCCCAACGAGTGT+TGG | 0.567790 | 5:-5410254 | MsG0580024474.01.T01:CDS |
| CGGTCAGTATTTCTTCCGGT+GGG | 0.578946 | 5:-5409900 | MsG0580024474.01.T01:CDS |
| TCCGCCGCACCGGATTCTCT+AGG | 0.590144 | 5:+5410341 | None:intergenic |
| CTCAGCTGATAGTAGAAACA+TGG | 0.594393 | 5:-5410286 | MsG0580024474.01.T01:CDS |
| GGGAGAAGCTGGTATGTCAC+CGG | 0.594972 | 5:-5410144 | MsG0580024474.01.T01:CDS |
| ATATGAATTCCCTTTCCCAC+CGG | 0.597083 | 5:+5409885 | None:intergenic |
| TTGAGGTTAGCAAAGTTGAG+TGG | 0.609267 | 5:-5410026 | MsG0580024474.01.T01:CDS |
| TTATATATGGCGGAGCGTGG+TGG | 0.612287 | 5:-5409946 | MsG0580024474.01.T01:CDS |
| CCGCACCGGATTCTCTAGGA+AGG | 0.614758 | 5:+5410345 | None:intergenic |
| GAACCGGAGGAAGTGATGGA+TGG | 0.618455 | 5:-5410107 | MsG0580024474.01.T01:CDS |
| TCCATAGCAAGCGGTCACAC+AGG | 0.622700 | 5:-5410227 | MsG0580024474.01.T01:CDS |
| TGGTTATATATGGCGGAGCG+TGG | 0.623341 | 5:-5409949 | MsG0580024474.01.T01:CDS |
| TATCATCTATGGCAGCAGGA+TGG | 0.632923 | 5:-5410313 | MsG0580024474.01.T01:CDS |
| TGTGCATAGTTCCTGATGAA+CGG | 0.633781 | 5:-5410193 | MsG0580024474.01.T01:CDS |
| ATAGCAAGCGGTCACACAGG+TGG | 0.636263 | 5:-5410224 | MsG0580024474.01.T01:CDS |
| TGGATTCTGGTTATATATGG+CGG | 0.643639 | 5:-5409956 | MsG0580024474.01.T01:CDS |
| GCATGTTGATCAACGATCAG+GGG | 0.659538 | 5:-5409775 | MsG0580024474.01.T01:CDS |
| GTTGGTTTATCCATAGCAAG+CGG | 0.671936 | 5:-5410236 | MsG0580024474.01.T01:CDS |
| TGAGTTAGTTGCTCTCTCTG+GGG | 0.683268 | 5:+5410406 | None:intergenic |
| ATAGTAGAAACATGGTCACA+CGG | 0.693003 | 5:-5410278 | MsG0580024474.01.T01:CDS |
| CCTTCCTAGAGAATCCGGTG+CGG | 0.793946 | 5:-5410345 | MsG0580024474.01.T01:CDS |
| GTAGAAACATGGTCACACGG+CGG | 0.823354 | 5:-5410275 | MsG0580024474.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGCTAATTTTATTTCTAAGA+TGG | - | Chr5:5410207-5410226 | MsG0580024474.01.T01:CDS | 20.0% |
| ! | TTTGATTGGAATAGATTTCT+TGG | - | Chr5:5410099-5410118 | MsG0580024474.01.T01:CDS | 25.0% |
| !!! | TTTATTTCTAAGATGGATTC+TGG | - | Chr5:5410214-5410233 | MsG0580024474.01.T01:CDS | 25.0% |
| ! | AATTCATATGGCACACTTTT+CGG | - | Chr5:5410312-5410331 | MsG0580024474.01.T01:CDS | 30.0% |
| ! | AGATGGATTCTGGTTATATA+TGG | - | Chr5:5410224-5410243 | MsG0580024474.01.T01:CDS | 30.0% |
| ! | TGAAAGACATGAAACTTGTT+TGG | - | Chr5:5409753-5409772 | MsG0580024474.01.T01:CDS | 30.0% |
| !! | ATTTCTTGGTTGTTGATTCT+CGG | - | Chr5:5410113-5410132 | MsG0580024474.01.T01:CDS | 30.0% |
| !!! | AAGATTTTACAAGAGTGTTG+AGG | - | Chr5:5410140-5410159 | MsG0580024474.01.T01:CDS | 30.0% |
| ATAGTAGAAACATGGTCACA+CGG | - | Chr5:5409905-5409924 | MsG0580024474.01.T01:CDS | 35.0% | |
| ATCGGAGTATGCAAAAAACA+TGG | - | Chr5:5410018-5410037 | MsG0580024474.01.T01:CDS | 35.0% | |
| TCGGAGTATGCAAAAAACAT+GGG | - | Chr5:5410019-5410038 | MsG0580024474.01.T01:CDS | 35.0% | |
| TTAGCAAAGTTGAGTGGTAA+AGG | - | Chr5:5410163-5410182 | MsG0580024474.01.T01:CDS | 35.0% | |
| ! | AAGGTGATTGATGGTAGTTA+TGG | + | Chr5:5409822-5409841 | None:intergenic | 35.0% |
| ! | TGGATTCTGGTTATATATGG+CGG | - | Chr5:5410227-5410246 | MsG0580024474.01.T01:CDS | 35.0% |
| AAGCATGTTGATCAACGATC+AGG | - | Chr5:5410406-5410425 | MsG0580024474.01.T01:CDS | 40.0% | |
| AATCACCTTCCTAGAGAATC+CGG | - | Chr5:5409833-5409852 | MsG0580024474.01.T01:CDS | 40.0% | |
| AGCATGTTGATCAACGATCA+GGG | - | Chr5:5410407-5410426 | MsG0580024474.01.T01:CDS | 40.0% | |
| ATATGAATTCCCTTTCCCAC+CGG | + | Chr5:5410301-5410320 | None:intergenic | 40.0% | |
| ATGAGTTAGTTGCTCTCTCT+GGG | + | Chr5:5409781-5409800 | None:intergenic | 40.0% | |
| ATGGATAAACCAACACTCGT+TGG | + | Chr5:5409941-5409960 | None:intergenic | 40.0% | |
| CAGGGGATGTTCACTTTATT+AGG | - | Chr5:5410425-5410444 | MsG0580024474.01.T01:CDS | 40.0% | |
| CTCAGCTGATAGTAGAAACA+TGG | - | Chr5:5409897-5409916 | MsG0580024474.01.T01:CDS | 40.0% | |
| TATGAGTTAGTTGCTCTCTC+TGG | + | Chr5:5409782-5409801 | None:intergenic | 40.0% | |
| TGGATAAACCAACACTCGTT+GGG | + | Chr5:5409940-5409959 | None:intergenic | 40.0% | |
| TGTGCATAGTTCCTGATGAA+CGG | - | Chr5:5409990-5410009 | MsG0580024474.01.T01:CDS | 40.0% | |
| TGTTCGGTCAGTATTTCTTC+CGG | - | Chr5:5410279-5410298 | MsG0580024474.01.T01:CDS | 40.0% | |
| TTGAGGTTAGCAAAGTTGAG+TGG | - | Chr5:5410157-5410176 | MsG0580024474.01.T01:CDS | 40.0% | |
| ! | GACGTGCTGTTCATAATAGA+TGG | - | Chr5:5410380-5410399 | MsG0580024474.01.T01:CDS | 40.0% |
| ! | GTTGGTTTATCCATAGCAAG+CGG | - | Chr5:5409947-5409966 | MsG0580024474.01.T01:CDS | 40.0% |
| ! | TTCTCTAGGAAGGTGATTGA+TGG | + | Chr5:5409831-5409850 | None:intergenic | 40.0% |
| !! | GAAGTGATGGATGGTTTGAT+TGG | - | Chr5:5410085-5410104 | MsG0580024474.01.T01:CDS | 40.0% |
| AAACCATCCATCACTTCCTC+CGG | + | Chr5:5410082-5410101 | None:intergenic | 45.0% | |
| AGTATTTCTTCCGGTGGGAA+AGG | - | Chr5:5410288-5410307 | MsG0580024474.01.T01:CDS | 45.0% | |
| GCAAAAAACATGGGAGAAGC+TGG | - | Chr5:5410028-5410047 | MsG0580024474.01.T01:CDS | 45.0% | |
| GCATGTTGATCAACGATCAG+GGG | - | Chr5:5410408-5410427 | MsG0580024474.01.T01:CDS | 45.0% | |
| GGTGGGAAAGGGAATTCATA+TGG | - | Chr5:5410300-5410319 | MsG0580024474.01.T01:CDS | 45.0% | |
| GTATTTCTTCCGGTGGGAAA+GGG | - | Chr5:5410289-5410308 | MsG0580024474.01.T01:CDS | 45.0% | |
| GTTACGGCCATGAAGCATAA+GGG | - | Chr5:5410358-5410377 | MsG0580024474.01.T01:CDS | 45.0% | |
| TATCATCTATGGCAGCAGGA+TGG | - | Chr5:5409870-5409889 | MsG0580024474.01.T01:CDS | 45.0% | |
| TCCTGATGAACGGTCAAGAT+CGG | - | Chr5:5410000-5410019 | MsG0580024474.01.T01:CDS | 45.0% | |
| TGAGTTAGTTGCTCTCTCTG+GGG | + | Chr5:5409780-5409799 | None:intergenic | 45.0% | |
| TGTTACGGCCATGAAGCATA+AGG | - | Chr5:5410357-5410376 | MsG0580024474.01.T01:CDS | 45.0% | |
| ! | TGGTATGTCACCGGAAGTTT+TGG | - | Chr5:5410048-5410067 | MsG0580024474.01.T01:CDS | 45.0% |
| ! | TGGTGGTGACAACTCTGTTA+CGG | - | Chr5:5410342-5410361 | MsG0580024474.01.T01:CDS | 45.0% |
| !! | ATGTCACCGGAAGTTTTGGT+GGG | - | Chr5:5410052-5410071 | MsG0580024474.01.T01:CDS | 45.0% |
| !! | TATGTCACCGGAAGTTTTGG+TGG | - | Chr5:5410051-5410070 | MsG0580024474.01.T01:CDS | 45.0% |
| AACAGAGTTGTCACCACCAC+CGG | + | Chr5:5410341-5410360 | None:intergenic | 50.0% | |
| AGCACGTCCCTTATGCTTCA+TGG | + | Chr5:5410368-5410387 | None:intergenic | 50.0% | |
| CGGTCAGTATTTCTTCCGGT+GGG | - | Chr5:5410283-5410302 | MsG0580024474.01.T01:CDS | 50.0% | |
| CTGGTATCATCTATGGCAGC+AGG | - | Chr5:5409866-5409885 | MsG0580024474.01.T01:CDS | 50.0% | |
| GGAGTTATCCCAACGAGTGT+TGG | - | Chr5:5409929-5409948 | MsG0580024474.01.T01:CDS | 50.0% | |
| GGTTCTCCCACCAAAACTTC+CGG | + | Chr5:5410061-5410080 | None:intergenic | 50.0% | |
| GTAGAAACATGGTCACACGG+CGG | - | Chr5:5409908-5409927 | MsG0580024474.01.T01:CDS | 50.0% | |
| TCCGATCTTGACCGTTCATC+AGG | + | Chr5:5410004-5410023 | None:intergenic | 50.0% | |
| TCGGTCAGTATTTCTTCCGG+TGG | - | Chr5:5410282-5410301 | MsG0580024474.01.T01:CDS | 50.0% | |
| ! | TGGTTATATATGGCGGAGCG+TGG | - | Chr5:5410234-5410253 | MsG0580024474.01.T01:CDS | 50.0% |
| ! | TTATATATGGCGGAGCGTGG+TGG | - | Chr5:5410237-5410256 | MsG0580024474.01.T01:CDS | 50.0% |
| !! | GGAAGTTTTGGTGGGAGAAC+CGG | - | Chr5:5410060-5410079 | MsG0580024474.01.T01:CDS | 50.0% |
| ATAGCAAGCGGTCACACAGG+TGG | - | Chr5:5409959-5409978 | MsG0580024474.01.T01:CDS | 55.0% | |
| CCTTCCTAGAGAATCCGGTG+CGG | - | Chr5:5409838-5409857 | MsG0580024474.01.T01:CDS | 55.0% | |
| GGCGGAGCTGGTATCATCTA+TGG | - | Chr5:5409859-5409878 | MsG0580024474.01.T01:CDS | 55.0% | |
| GGGAGAAGCTGGTATGTCAC+CGG | - | Chr5:5410039-5410058 | MsG0580024474.01.T01:CDS | 55.0% | |
| TCCATAGCAAGCGGTCACAC+AGG | - | Chr5:5409956-5409975 | MsG0580024474.01.T01:CDS | 55.0% | |
| ! | ACCTGTGTGACCGCTTGCTA+TGG | + | Chr5:5409960-5409979 | None:intergenic | 55.0% |
| ! | ATGGCACACTTTTCGGCTGC+CGG | - | Chr5:5410319-5410338 | MsG0580024474.01.T01:CDS | 55.0% |
| ! | GAACCGGAGGAAGTGATGGA+TGG | - | Chr5:5410076-5410095 | MsG0580024474.01.T01:CDS | 55.0% |
| ! | GGGGATCACGACGACTTGTT+CGG | - | Chr5:5410263-5410282 | MsG0580024474.01.T01:CDS | 55.0% |
| !! | AGTTTTGGTGGGAGAACCGG+AGG | - | Chr5:5410063-5410082 | MsG0580024474.01.T01:CDS | 55.0% |
| GGGAGAACCGGAGGAAGTGA+TGG | - | Chr5:5410072-5410091 | MsG0580024474.01.T01:CDS | 60.0% | |
| TCCTAGAGAATCCGGTGCGG+CGG | - | Chr5:5409841-5409860 | MsG0580024474.01.T01:CDS | 60.0% | |
| ! | CCGCACCGGATTCTCTAGGA+AGG | + | Chr5:5409841-5409860 | None:intergenic | 60.0% |
| TCCGCCGCACCGGATTCTCT+AGG | + | Chr5:5409845-5409864 | None:intergenic | 65.0% | |
| TGATACCAGCTCCGCCGCAC+CGG | + | Chr5:5409855-5409874 | None:intergenic | 65.0% | |
| ! | CACTTTTCGGCTGCCGGTGG+TGG | - | Chr5:5410325-5410344 | MsG0580024474.01.T01:CDS | 65.0% |
| ! | GCACACTTTTCGGCTGCCGG+TGG | - | Chr5:5410322-5410341 | MsG0580024474.01.T01:CDS | 65.0% |
| AGAATCCGGTGCGGCGGAGC+TGG | - | Chr5:5409847-5409866 | MsG0580024474.01.T01:CDS | 70.0% | |
| ! | TATGGCGGAGCGTGGTGGCG+CGG | - | Chr5:5410242-5410261 | MsG0580024474.01.T01:CDS | 70.0% |
| ! | ATGGCGGAGCGTGGTGGCGC+GGG | - | Chr5:5410243-5410262 | MsG0580024474.01.T01:CDS | 75.0% |
| !! | TGGCGGAGCGTGGTGGCGCG+GGG | - | Chr5:5410244-5410263 | MsG0580024474.01.T01:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 5409752 | 5410453 | 5409752 | ID=MsG0580024474.01;Name=MsG0580024474.01 |
| Chr5 | mRNA | 5409752 | 5410453 | 5409752 | ID=MsG0580024474.01.T01;Parent=MsG0580024474.01;Name=MsG0580024474.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|233 |
| Chr5 | exon | 5409752 | 5410453 | 5409752 | ID=MsG0580024474.01.T01:exon:25659;Parent=MsG0580024474.01.T01 |
| Chr5 | CDS | 5409752 | 5410453 | 5409752 | ID=MsG0580024474.01.T01:cds;Parent=MsG0580024474.01.T01 |
| Gene Sequence |
| Protein sequence |
