AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031549.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031549.01.T01 MTR_6g026800 80.247 324 16 5 3 281 1 321 7.44e-174 483
MsG0680031549.01.T01 MTR_7g088090 50.453 331 101 10 3 281 1 320 1.70e-86 261
MsG0680031549.01.T01 MTR_8g043960 41.860 301 127 7 18 281 24 313 1.40e-62 200
MsG0680031549.01.T01 MTR_3g010660 39.820 334 134 8 3 281 1 322 2.22e-61 197
MsG0680031549.01.T01 MTR_3g101780 47.097 155 68 5 4 158 14 154 3.67e-30 117
MsG0680031549.01.T01 MTR_4g085910 44.776 134 66 3 18 150 18 144 1.17e-25 104
MsG0680031549.01.T01 MTR_5g088230 44.828 145 70 3 3 145 1 137 2.91e-24 99.0
MsG0680031549.01.T01 MTR_5g088230 44.828 145 70 3 3 145 6 142 3.44e-24 99.0
MsG0680031549.01.T01 MTR_7g104480 38.060 134 72 2 24 146 45 178 2.79e-19 87.4
MsG0680031549.01.T01 MTR_2g086340 39.706 136 66 4 19 147 23 149 9.57e-18 82.0
MsG0680031549.01.T01 MTR_2g086390 37.879 132 69 4 22 147 12 136 1.54e-14 72.4
MsG0680031549.01.T01 MTR_2g086390 37.879 132 69 4 22 147 12 136 1.83e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031549.01.T01 AT3G56850 45.679 324 104 8 3 281 1 297 3.58e-72 224
MsG0680031549.01.T01 AT2G41070 42.177 294 123 6 3 281 1 262 7.99e-57 183
MsG0680031549.01.T01 AT2G41070 42.177 294 123 6 3 281 1 262 7.99e-57 183
MsG0680031549.01.T01 AT2G41070 42.177 294 123 6 3 281 1 262 7.99e-57 183
MsG0680031549.01.T01 AT2G41070 42.177 294 123 6 3 281 10 271 8.93e-57 184
MsG0680031549.01.T01 AT2G41070 40.226 266 112 6 3 253 1 234 2.87e-43 148
MsG0680031549.01.T01 AT1G49720 49.660 147 62 4 7 146 12 153 2.15e-30 117
MsG0680031549.01.T01 AT1G49720 49.660 147 62 4 7 146 12 153 2.15e-30 117
MsG0680031549.01.T01 AT1G49720 49.660 147 62 4 7 146 12 153 2.33e-30 118
MsG0680031549.01.T01 AT3G19290 45.775 142 66 2 16 146 32 173 2.89e-28 112
MsG0680031549.01.T01 AT3G19290 45.775 142 66 2 16 146 32 173 3.94e-28 112
MsG0680031549.01.T01 AT3G19290 45.775 142 66 2 16 146 32 173 4.03e-28 112
MsG0680031549.01.T01 AT3G19290 45.775 142 66 2 16 146 32 173 4.18e-28 112
MsG0680031549.01.T01 AT3G19290 45.775 142 66 2 16 146 32 173 4.18e-28 112
MsG0680031549.01.T01 AT1G45249 43.373 166 65 7 18 163 21 177 3.23e-21 92.8
MsG0680031549.01.T01 AT1G45249 46.429 140 57 5 18 146 21 153 3.37e-21 92.4
MsG0680031549.01.T01 AT1G45249 46.429 140 57 5 18 146 21 153 3.37e-21 92.4
MsG0680031549.01.T01 AT1G45249 46.429 140 57 5 18 146 36 168 3.59e-21 92.8
MsG0680031549.01.T01 AT1G45249 46.429 140 57 5 18 146 36 168 3.59e-21 92.8
MsG0680031549.01.T01 AT1G45249 43.373 166 65 7 18 163 21 177 3.68e-21 92.8
MsG0680031549.01.T01 AT1G45249 46.429 140 57 5 18 146 21 153 4.17e-21 92.4
MsG0680031549.01.T01 AT1G45249 46.429 140 57 5 18 146 21 153 4.17e-21 92.4
MsG0680031549.01.T01 AT1G45249 46.429 140 57 5 18 146 21 153 4.17e-21 92.4
MsG0680031549.01.T01 AT1G45249 46.429 140 57 5 18 146 21 153 4.17e-21 92.4
MsG0680031549.01.T01 AT4G34000 38.690 168 63 6 15 146 24 187 1.49e-20 91.3
MsG0680031549.01.T01 AT4G34000 38.690 168 63 6 15 146 24 187 1.65e-20 91.3
MsG0680031549.01.T01 AT4G34000 38.690 168 63 6 15 146 24 187 1.65e-20 91.3
MsG0680031549.01.T01 AT4G34000 38.690 168 63 6 15 146 24 187 1.65e-20 91.3
MsG0680031549.01.T01 AT3G44460 42.857 140 58 4 17 146 34 161 1.29e-19 87.4
MsG0680031549.01.T01 AT2G36270 33.880 183 67 4 18 146 37 219 7.92e-16 77.4
MsG0680031549.01.T01 AT2G36270 33.880 183 67 4 18 146 37 219 7.92e-16 77.4
MsG0680031549.01.T01 AT2G36270 33.880 183 67 4 18 146 37 219 1.48e-15 76.6
MsG0680031549.01.T01 AT5G42910 38.636 132 54 3 18 145 20 128 1.95e-14 73.2

Find 69 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAACCATCTTGGTAATTT+AGG 0.046059 6:-22125310 MsG0680031549.01.T01:CDS
GATATCGCCATCTTCTTTAA+TGG 0.187061 6:-22124744 MsG0680031549.01.T01:CDS
AAAACCATCTTGGTAATTTA+GGG 0.238621 6:-22125309 MsG0680031549.01.T01:CDS
GCTGGCGAGGTTTCGGATTT+CGG 0.287074 6:-22125229 MsG0680031549.01.T01:CDS
GATGACTTTGGAGGATTTCT+TGG 0.296873 6:-22125014 MsG0680031549.01.T01:CDS
GGAAGAAGAGGGGTGTTGAT+AGG 0.304171 6:-22125075 MsG0680031549.01.T01:CDS
CAAGGGAGTTTAACTTTGTC+TGG 0.325021 6:-22125145 MsG0680031549.01.T01:CDS
TGTTGAAGCTGGCGAGGTTT+CGG 0.333824 6:-22125236 MsG0680031549.01.T01:CDS
GGTTGCCGGGAATCAAGTTT+TGG 0.343807 6:-22124774 MsG0680031549.01.T01:CDS
TTTCGCAACATGGTCTTCAT+TGG 0.353409 6:-22124898 MsG0680031549.01.T01:CDS
ATATCGCCATCTTCTTTAAT+GGG 0.357518 6:-22124743 MsG0680031549.01.T01:CDS
AGGATGATGGTGGTTTGTTA+AGG 0.362877 6:-22124952 MsG0680031549.01.T01:CDS
CAAAGACTTTACCTTTATCT+AGG 0.373965 6:-22125369 MsG0680031549.01.T01:CDS
TGCATCCAAAACTTGATTCC+CGG 0.395693 6:+22124769 None:intergenic
GTGAAACTTAGAAGAAGAAA+TGG 0.400612 6:-22125419 None:intergenic
GGCTCGGGTGGTGGCGCAGT+TGG 0.406451 6:+22122508 None:intergenic
GAGGATTTCTTGGTGAAAGC+TGG 0.421412 6:-22125004 MsG0680031549.01.T01:CDS
GGATGATGGTGGTTTGTTAA+GGG 0.422756 6:-22124951 MsG0680031549.01.T01:CDS
GAAGAAGAGGGGTGTTGATA+GGG 0.424019 6:-22125074 MsG0680031549.01.T01:CDS
ACTTTACCTTTATCTAGGTC+AGG 0.424724 6:-22125364 MsG0680031549.01.T01:CDS
AAAGATCCTGACCTAGATAA+AGG 0.429936 6:+22125358 None:intergenic
TGATTCCCGGCAACCTGAAA+AGG 0.430801 6:+22124782 None:intergenic
GATGAAGTTCAAAACCATCT+TGG 0.441683 6:-22125319 MsG0680031549.01.T01:CDS
TTGGTGAAAGCTGGAGTTGT+TGG 0.447659 6:-22124995 MsG0680031549.01.T01:CDS
TGAAACTTAGAAGAAGAAAT+GGG 0.451354 6:-22125418 None:intergenic
TTTCATAACAATAAGGATGA+TGG 0.459884 6:-22124965 MsG0680031549.01.T01:CDS
GCAGGCTTATACACAAGAAC+TGG 0.460547 6:-22123956 MsG0680031549.01.T01:intron
TTGATTCGAATGAGGATTCT+CGG 0.469255 6:-22124928 MsG0680031549.01.T01:CDS
CGGCATAATGTTTCGCAACA+TGG 0.481536 6:-22124908 MsG0680031549.01.T01:CDS
AGTGATGTTGCTGCTGCTGC+TGG 0.483550 6:-22125202 MsG0680031549.01.T01:CDS
TCTTCATTGGATGCAATATC+CGG 0.491078 6:-22124885 MsG0680031549.01.T01:CDS
GACACTTGGTGAGATGACTT+TGG 0.498834 6:-22125026 MsG0680031549.01.T01:CDS
GTTTCCCTAAATTACCAAGA+TGG 0.502080 6:+22125305 None:intergenic
GTTGCAATGAAGACATCAAA+AGG 0.505109 6:+22122453 None:intergenic
CAACTTGGTTTGAGTTCACA+AGG 0.505242 6:-22125163 MsG0680031549.01.T01:CDS
AGAGGGGTGTTGATAGGGAT+AGG 0.509576 6:-22125069 MsG0680031549.01.T01:CDS
GTAGTACCCATTAAAGAAGA+TGG 0.510152 6:+22124737 None:intergenic
GCATGAACTGCCGCAAAACC+CGG 0.510299 6:+22124815 None:intergenic
GTATGAAAAGCATATGATGC+CGG 0.511392 6:-22124834 MsG0680031549.01.T01:CDS
GTTAAGGGTTGATTCGAATG+AGG 0.514656 6:-22124936 MsG0680031549.01.T01:CDS
TAAAGTTTCGCGTTTAGAAG+AGG 0.534492 6:-22123929 MsG0680031549.01.T01:CDS
AACCTGAAAAGGCTGTTGAA+TGG 0.537317 6:+22124793 None:intergenic
AGATATGCAAGGGAAGAAGA+GGG 0.542486 6:-22125086 MsG0680031549.01.T01:CDS
AAGATATGCAAGGGAAGAAG+AGG 0.548251 6:-22125087 MsG0680031549.01.T01:CDS
ACTTGGTGAGATGACTTTGG+AGG 0.554555 6:-22125023 MsG0680031549.01.T01:CDS
GTTGTCACAGGAGATAGAGA+AGG 0.566153 6:-22122536 MsG0680031549.01.T01:intron
AACATACAGCATAATCAACT+TGG 0.566933 6:-22125178 MsG0680031549.01.T01:CDS
CATAACAATAAGGATGATGG+TGG 0.567397 6:-22124962 MsG0680031549.01.T01:CDS
TATGAAAAGCATATGATGCC+GGG 0.578298 6:-22124833 MsG0680031549.01.T01:CDS
GTTGTTGCTGCTGAACAGAA+TGG 0.584868 6:+22124861 None:intergenic
GGTAATTTAGGGAAACCACT+TGG 0.595722 6:-22125298 MsG0680031549.01.T01:CDS
TAGTAAGAAAACTGTTGATG+AGG 0.605589 6:-22125116 MsG0680031549.01.T01:CDS
AGAAAACTGTTGATGAGGTG+TGG 0.606026 6:-22125111 MsG0680031549.01.T01:CDS
AGGTGTGGAAAGATATGCAA+GGG 0.611551 6:-22125096 MsG0680031549.01.T01:CDS
GATATGCAAGGGAAGAAGAG+GGG 0.613310 6:-22125085 MsG0680031549.01.T01:CDS
AGTGTGTGGAGTGTTGAAGC+TGG 0.616392 6:-22125247 MsG0680031549.01.T01:CDS
ATGAGTTGCTTAAGAGTGTG+TGG 0.618901 6:-22125261 MsG0680031549.01.T01:CDS
TGCTGCTGAACAGAATGGAC+CGG 0.626230 6:+22124866 None:intergenic
GAAGAAGAAATGGGGTCACA+AGG 0.627188 6:-22125409 MsG0680031549.01.T01:CDS
GTCACAGGAGATAGAGAAGG+AGG 0.631775 6:-22122533 MsG0680031549.01.T01:intron
GTGGAGTGTTGAAGCTGGCG+AGG 0.635886 6:-22125242 MsG0680031549.01.T01:CDS
TCAAGATTCATACTTCCAAG+TGG 0.648117 6:+22125283 None:intergenic
GTTTAGAAGAGGAAAATGAA+AGG 0.656611 6:-22123918 MsG0680031549.01.T01:CDS
GAAGAAATGGGGTCACAAGG+TGG 0.673383 6:-22125406 MsG0680031549.01.T01:CDS
GAAACTTAGAAGAAGAAATG+GGG 0.674810 6:-22125417 None:intergenic
AACTTGGTTTGAGTTCACAA+GGG 0.674938 6:-22125162 MsG0680031549.01.T01:CDS
GGCGAGGTTTCGGATTTCGG+CGG 0.691722 6:-22125226 MsG0680031549.01.T01:CDS
AGGATGCTGAATTAGTTCTG+CGG 0.716972 6:+22122473 None:intergenic
GAGGTGTGGAAAGATATGCA+AGG 0.743009 6:-22125097 MsG0680031549.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATAAAAAAAGATGAAATA+AGG - Chr6:22123356-22123375 MsG0680031549.01.T01:intron 15.0%
!! GTTATTATCAATAATATTCT+AGG - Chr6:22123628-22123647 MsG0680031549.01.T01:intron 15.0%
!! TTATAGATATATATCTTCAA+GGG + Chr6:22124733-22124752 None:intergenic 15.0%
!!! AAGTAAAAAGAAAATTTTCT+TGG - Chr6:22124130-22124149 MsG0680031549.01.T01:intron 15.0%
!!! AGAATATTATTGATAATAAC+TGG + Chr6:22123628-22123647 None:intergenic 15.0%
!!! AGTAAAAAGAAAATTTTCTT+GGG - Chr6:22124131-22124150 MsG0680031549.01.T01:intron 15.0%
!!! ATTACTTTTGAATATTGAAT+CGG + Chr6:22124496-22124515 None:intergenic 15.0%
!!! TAAAGATTTTATATTTCCTT+TGG - Chr6:22124307-22124326 MsG0680031549.01.T01:intron 15.0%
!! AAAAGAATACATATTCATGA+AGG + Chr6:22124007-22124026 None:intergenic 20.0%
!! AAAAGAGGATGATAAAAAAT+AGG - Chr6:22123762-22123781 MsG0680031549.01.T01:intron 20.0%
!! AAAATAGAGTTATATAGCTT+AGG + Chr6:22125049-22125068 None:intergenic 20.0%
!! AAAGAGGATGATAAAAAATA+GGG - Chr6:22123763-22123782 MsG0680031549.01.T01:intron 20.0%
!! CCTTCAAAAAAAAAAACTTA+GGG + Chr6:22123558-22123577 None:intergenic 20.0%
!! GTTATAGATATATATCTTCA+AGG + Chr6:22124734-22124753 None:intergenic 20.0%
!! TCCTTCAAAAAAAAAAACTT+AGG + Chr6:22123559-22123578 None:intergenic 20.0%
!!! AAGCTATATAACTCTATTTT+AGG - Chr6:22125049-22125068 MsG0680031549.01.T01:CDS 20.0%
!!! AGCTTTATACAAAAGATTAA+GGG + Chr6:22123589-22123608 None:intergenic 20.0%
!!! ATTAAGTTGTTTATCCAAAT+AGG + Chr6:22123297-22123316 None:intergenic 20.0%
!!! CTATAACTTTCTAAGATATT+AGG + Chr6:22124274-22124293 None:intergenic 20.0%
!!! CTATCTAGAATGATATTTTA+TGG + Chr6:22125291-22125310 None:intergenic 20.0%
!!! TGAATCTTTTCATAACAATA+AGG - Chr6:22122902-22122921 MsG0680031549.01.T01:intron 20.0%
!!! TTAAGTTGTTTATCCAAATA+GGG + Chr6:22123296-22123315 None:intergenic 20.0%
!!! TTTCTTGTTTGTTGATTTTT+CGG - Chr6:22124916-22124935 MsG0680031549.01.T01:CDS 20.0%
!!! TTTCTTTTCGATAAAATTCT+AGG - Chr6:22125179-22125198 MsG0680031549.01.T01:CDS 20.0%
! AGACTCAAACCTAAATAAAA+GGG + Chr6:22123267-22123286 None:intergenic 25.0%
! CTTGTTAAGGATTCAAAAAA+TGG + Chr6:22124655-22124674 None:intergenic 25.0%
! GTATTAAGGAAATATCAACA+TGG + Chr6:22124240-22124259 None:intergenic 25.0%
! TAAATAAACAAACCAACCAA+AGG + Chr6:22124326-22124345 None:intergenic 25.0%
! TAGACTCAAACCTAAATAAA+AGG + Chr6:22123268-22123287 None:intergenic 25.0%
! TCAAACCAAAAAAAACAAAC+AGG + Chr6:22123866-22123885 None:intergenic 25.0%
! TTAAAATGGAAACTTTGTCT+TGG - Chr6:22124561-22124580 MsG0680031549.01.T01:intron 25.0%
! TTTCATAACAATAAGGATGA+TGG - Chr6:22122909-22122928 MsG0680031549.01.T01:intron 25.0%
!! AAAACCATCTTGGTAATTTA+GGG - Chr6:22122565-22122584 MsG0680031549.01.T01:intron 25.0%
!! CAGCTTTATACAAAAGATTA+AGG + Chr6:22123590-22123609 None:intergenic 25.0%
!! GATTTTATATTTCCTTTGGT+TGG - Chr6:22124311-22124330 MsG0680031549.01.T01:intron 25.0%
!! TACTTAAGAGCATAAAACTT+AGG - Chr6:22124974-22124993 MsG0680031549.01.T01:CDS 25.0%
!! TTACTTTATTTCCTACTACT+AGG - Chr6:22123213-22123232 MsG0680031549.01.T01:intron 25.0%
!!! ATAACTCTATTTTAGGCTTT+TGG - Chr6:22125056-22125075 MsG0680031549.01.T01:CDS 25.0%
!!! CCCTAAGTTTTTTTTTTTGA+AGG - Chr6:22123555-22123574 MsG0680031549.01.T01:intron 25.0%
!!! TAGTTTGTAACTTTTGTTAG+AGG - Chr6:22125207-22125226 MsG0680031549.01.T01:CDS 25.0%
!!! TTCTTGTTTGTTGATTTTTC+GGG - Chr6:22124917-22124936 MsG0680031549.01.T01:CDS 25.0%
AACATACAGCATAATCAACT+TGG - Chr6:22122696-22122715 MsG0680031549.01.T01:intron 30.0%
ACCTAAATAAAAGGGAAATC+AGG + Chr6:22123259-22123278 None:intergenic 30.0%
AGGCATATCGATAAGTATTA+AGG + Chr6:22124254-22124273 None:intergenic 30.0%
ATATCGCCATCTTCTTTAAT+GGG - Chr6:22123131-22123150 MsG0680031549.01.T01:intron 30.0%
CAAAGACTTTACCTTTATCT+AGG - Chr6:22122505-22122524 MsG0680031549.01.T01:CDS 30.0%
CAGCTTATATGAAAACAGAA+TGG + Chr6:22123382-22123401 None:intergenic 30.0%
GAAAAACAACAGTAGTTAGT+AGG + Chr6:22124900-22124919 None:intergenic 30.0%
GTTTAGAAGAGGAAAATGAA+AGG - Chr6:22123956-22123975 MsG0680031549.01.T01:intron 30.0%
GTTTGTTTATTTAGACAGAG+TGG - Chr6:22124333-22124352 MsG0680031549.01.T01:intron 30.0%
TAGTAAGAAAACTGTTGATG+AGG - Chr6:22122758-22122777 MsG0680031549.01.T01:intron 30.0%
TTATCAGATACACAAACACT+AGG - Chr6:22123686-22123705 MsG0680031549.01.T01:intron 30.0%
TTTCTCTACTAAAATACCAG+AGG + Chr6:22123726-22123745 None:intergenic 30.0%
! AAGCATTTGTGAGAATGTTT+TGG + Chr6:22123495-22123514 None:intergenic 30.0%
! CAAAACCATCTTGGTAATTT+AGG - Chr6:22122564-22122583 MsG0680031549.01.T01:intron 30.0%
! GAGCATAAAACTTAGGTTTT+TGG - Chr6:22124981-22125000 MsG0680031549.01.T01:CDS 30.0%
! GTTTTCTGTAATGCATCAAT+TGG + Chr6:22124207-22124226 None:intergenic 30.0%
!! TCCTGATTTCCCTTTTATTT+AGG - Chr6:22123255-22123274 MsG0680031549.01.T01:intron 30.0%
!!! GAAGTCCTGTTTGTTTTTTT+TGG - Chr6:22123858-22123877 MsG0680031549.01.T01:intron 30.0%
!!! TGTTGATTTTTCGGGATAAT+TGG - Chr6:22124925-22124944 MsG0680031549.01.T01:CDS 30.0%
AAAGATCCTGACCTAGATAA+AGG + Chr6:22122519-22122538 None:intergenic 35.0%
AAATATCAACATGGCCAAAG+TGG + Chr6:22124231-22124250 None:intergenic 35.0%
ACAAACACTAGGTCGAAAAA+GGG - Chr6:22123697-22123716 MsG0680031549.01.T01:intron 35.0%
ACTTTACCTTTATCTAGGTC+AGG - Chr6:22122510-22122529 MsG0680031549.01.T01:CDS 35.0%
AGATAGTTCATCTCTACTCA+CGG - Chr6:22125305-22125324 MsG0680031549.01.T01:CDS 35.0%
AGGGGTTAAGAGGTTTAAAA+TGG - Chr6:22124547-22124566 MsG0680031549.01.T01:intron 35.0%
CACTAATCAAAGTGAGACTT+GGG - Chr6:22125153-22125172 MsG0680031549.01.T01:CDS 35.0%
CATTACAGAAAACTCCACTT+TGG - Chr6:22124214-22124233 MsG0680031549.01.T01:intron 35.0%
CTCTTAAGTAGAGACATGAA+TGG + Chr6:22124964-22124983 None:intergenic 35.0%
GATATCGCCATCTTCTTTAA+TGG - Chr6:22123130-22123149 MsG0680031549.01.T01:intron 35.0%
GATGAAGTTCAAAACCATCT+TGG - Chr6:22122555-22122574 MsG0680031549.01.T01:intron 35.0%
GGGAAATCAGGAAAAGAATA+AGG + Chr6:22123247-22123266 None:intergenic 35.0%
GTAGTACCCATTAAAGAAGA+TGG + Chr6:22123140-22123159 None:intergenic 35.0%
GTTTATTTAGACAGAGTGGT+TGG - Chr6:22124337-22124356 MsG0680031549.01.T01:intron 35.0%
GTTTCCCTAAATTACCAAGA+TGG + Chr6:22122572-22122591 None:intergenic 35.0%
TAAAGTTTCGCGTTTAGAAG+AGG - Chr6:22123945-22123964 MsG0680031549.01.T01:CDS 35.0%
TACCAATAACATGTCGTCTA+TGG - Chr6:22124830-22124849 MsG0680031549.01.T01:CDS 35.0%
TATAAGCCTGCACATTTCAT+TGG + Chr6:22123909-22123928 None:intergenic 35.0%
TCAAGATTCATACTTCCAAG+TGG + Chr6:22122594-22122613 None:intergenic 35.0%
TCACTAATCAAAGTGAGACT+TGG - Chr6:22125152-22125171 MsG0680031549.01.T01:CDS 35.0%
TCTTCATTGGATGCAATATC+CGG - Chr6:22122989-22123008 MsG0680031549.01.T01:intron 35.0%
TGAGTCTATGTATCCCTATT+TGG - Chr6:22123280-22123299 MsG0680031549.01.T01:intron 35.0%
TGCACATTTCATTGGCATAT+GGG + Chr6:22123901-22123920 None:intergenic 35.0%
TTAAACCTCTTAACCCCTAA+GGG + Chr6:22124545-22124564 None:intergenic 35.0%
TTAACACAACCCTACAAAAC+CGG - Chr6:22125005-22125024 MsG0680031549.01.T01:CDS 35.0%
TTCATCAAACTGTAAGACCT+CGG - Chr6:22124775-22124794 MsG0680031549.01.T01:CDS 35.0%
TTTAAACCTCTTAACCCCTA+AGG + Chr6:22124546-22124565 None:intergenic 35.0%
! AACTTGGTTTGAGTTCACAA+GGG - Chr6:22122712-22122731 MsG0680031549.01.T01:intron 35.0%
! CATAACAATAAGGATGATGG+TGG - Chr6:22122912-22122931 MsG0680031549.01.T01:intron 35.0%
! GTATGAAAAGCATATGATGC+CGG - Chr6:22123040-22123059 MsG0680031549.01.T01:intron 35.0%
! GTTATACTCTTTTCTCTGTG+AGG - Chr6:22123818-22123837 MsG0680031549.01.T01:intron 35.0%
! TATGAAAAGCATATGATGCC+GGG - Chr6:22123041-22123060 MsG0680031549.01.T01:intron 35.0%
! TCTGATAATGTACCTGTTGA+AGG + Chr6:22123674-22123693 None:intergenic 35.0%
! TTGATTCGAATGAGGATTCT+CGG - Chr6:22122946-22122965 MsG0680031549.01.T01:intron 35.0%
!! GGTAACATTTTTGTTGTCAC+AGG - Chr6:22125326-22125345 MsG0680031549.01.T01:CDS 35.0%
!!! GCTTTGAAATCAGTTTTGTG+AGG + Chr6:22125093-22125112 None:intergenic 35.0%
!!! GTTTTTTTTGGTTTGACACG+AGG - Chr6:22123870-22123889 MsG0680031549.01.T01:intron 35.0%
AAATGCTAACAAGTGCCCTT+AGG - Chr6:22124527-22124546 MsG0680031549.01.T01:intron 40.0%
AACCTGAAAAGGCTGTTGAA+TGG + Chr6:22123084-22123103 None:intergenic 40.0%
AAGATATGCAAGGGAAGAAG+AGG - Chr6:22122787-22122806 MsG0680031549.01.T01:intron 40.0%
AATGCTAACAAGTGCCCTTA+GGG - Chr6:22124528-22124547 MsG0680031549.01.T01:intron 40.0%
AGATATGCAAGGGAAGAAGA+GGG - Chr6:22122788-22122807 MsG0680031549.01.T01:intron 40.0%
AGGAACTTGATCCTAGTAGT+AGG + Chr6:22123227-22123246 None:intergenic 40.0%
AGGTGTGGAAAGATATGCAA+GGG - Chr6:22122778-22122797 MsG0680031549.01.T01:intron 40.0%
CACAAACACTAGGTCGAAAA+AGG - Chr6:22123696-22123715 MsG0680031549.01.T01:intron 40.0%
CATATGCCAATGAAATGTGC+AGG - Chr6:22123900-22123919 MsG0680031549.01.T01:intron 40.0%
CGTGAAAAACAACAGACACT+TGG - Chr6:22122834-22122853 MsG0680031549.01.T01:intron 40.0%
CTGCACATTTCATTGGCATA+TGG + Chr6:22123902-22123921 None:intergenic 40.0%
GCATTCTTCACCTTACAAAC+CGG + Chr6:22125027-22125046 None:intergenic 40.0%
GGATTTCAAGCAATGAGAGT+TGG - Chr6:22124358-22124377 MsG0680031549.01.T01:intron 40.0%
GGTAATTTAGGGAAACCACT+TGG - Chr6:22122576-22122595 MsG0680031549.01.T01:intron 40.0%
GTCCATAGACGACATGTTAT+TGG + Chr6:22124835-22124854 None:intergenic 40.0%
TAATGTACCTGTTGAAGGTG+TGG + Chr6:22123669-22123688 None:intergenic 40.0%
TAGTAGAGAAAACTGTCGAG+AGG - Chr6:22123735-22123754 MsG0680031549.01.T01:intron 40.0%
TCAAGCAATGAGAGTTGGAA+TGG - Chr6:22124363-22124382 MsG0680031549.01.T01:intron 40.0%
TGCATCCAAAACTTGATTCC+CGG + Chr6:22123108-22123127 None:intergenic 40.0%
TTTCGCAACATGGTCTTCAT+TGG - Chr6:22122976-22122995 MsG0680031549.01.T01:intron 40.0%
TTTGCTAACAAGTGCCCTTA+GGG + Chr6:22124691-22124710 None:intergenic 40.0%
! AATGTACCTGTTGAAGGTGT+GGG + Chr6:22123668-22123687 None:intergenic 40.0%
! AGAAAACTGTTGATGAGGTG+TGG - Chr6:22122763-22122782 MsG0680031549.01.T01:intron 40.0%
! ATGAGTTGCTTAAGAGTGTG+TGG - Chr6:22122613-22122632 MsG0680031549.01.T01:intron 40.0%
! CAACTTGGTTTGAGTTCACA+AGG - Chr6:22122711-22122730 MsG0680031549.01.T01:intron 40.0%
! CAAGGGAGTTTAACTTTGTC+TGG - Chr6:22122729-22122748 MsG0680031549.01.T01:intron 40.0%
! GACATAATCCCAAAAGTGCA+GGG + Chr6:22124411-22124430 None:intergenic 40.0%
! GATGACTTTGGAGGATTTCT+TGG - Chr6:22122860-22122879 MsG0680031549.01.T01:intron 40.0%
! TGACATAATCCCAAAAGTGC+AGG + Chr6:22124412-22124431 None:intergenic 40.0%
! TTTTGCTAACAAGTGCCCTT+AGG + Chr6:22124692-22124711 None:intergenic 40.0%
!! AAGGGCACTTGTTAGCAAAA+GGG - Chr6:22124692-22124711 MsG0680031549.01.T01:intron 40.0%
!! ACCTTACAAACCGGTTTTGT+AGG + Chr6:22125018-22125037 None:intergenic 40.0%
!! AGGATGATGGTGGTTTGTTA+AGG - Chr6:22122922-22122941 MsG0680031549.01.T01:intron 40.0%
!! AGGATGCTGAATTAGTTCTG+CGG + Chr6:22125404-22125423 None:intergenic 40.0%
!! CAGTTTTGTGAGGTTGTCTT+CGG + Chr6:22125083-22125102 None:intergenic 40.0%
!! CCTTACAAACCGGTTTTGTA+GGG + Chr6:22125017-22125036 None:intergenic 40.0%
!! GGATGATGGTGGTTTGTTAA+GGG - Chr6:22122923-22122942 MsG0680031549.01.T01:intron 40.0%
!! GTTAAGGGTTGATTCGAATG+AGG - Chr6:22122938-22122957 MsG0680031549.01.T01:intron 40.0%
!! TAAGGGCACTTGTTAGCAAA+AGG - Chr6:22124691-22124710 MsG0680031549.01.T01:intron 40.0%
!!! GCTGCTTTTATTAGCTATCC+TGG - Chr6:22123405-22123424 MsG0680031549.01.T01:intron 40.0%
AAAACTCCCACACCTTCAAC+AGG - Chr6:22123659-22123678 MsG0680031549.01.T01:intron 45.0%
ACCAACCATATGGTATGTGG+TGG - Chr6:22124853-22124872 MsG0680031549.01.T01:CDS 45.0%
ATGCTAACAAGTGCCCTTAG+GGG - Chr6:22124529-22124548 MsG0680031549.01.T01:intron 45.0%
CATACTTCAACAAGCTCTCC+AGG + Chr6:22123426-22123445 None:intergenic 45.0%
CGGCATAATGTTTCGCAACA+TGG - Chr6:22122966-22122985 MsG0680031549.01.T01:intron 45.0%
GAGGATTTCTTGGTGAAAGC+TGG - Chr6:22122870-22122889 MsG0680031549.01.T01:intron 45.0%
GAGGTGTGGAAAGATATGCA+AGG - Chr6:22122777-22122796 MsG0680031549.01.T01:intron 45.0%
GATATGCAAGGGAAGAAGAG+GGG - Chr6:22122789-22122808 MsG0680031549.01.T01:intron 45.0%
GCACTTTGTTCTGTGAGCTT+TGG - Chr6:22124057-22124076 MsG0680031549.01.T01:intron 45.0%
GCAGGCTTATACACAAGAAC+TGG - Chr6:22123918-22123937 MsG0680031549.01.T01:CDS 45.0%
GTTGTCACAGGAGATAGAGA+AGG - Chr6:22125338-22125357 MsG0680031549.01.T01:CDS 45.0%
GTTGTTGCTGCTGAACAGAA+TGG + Chr6:22123016-22123035 None:intergenic 45.0%
TAGAGAAAACTGTCGAGAGG+AGG - Chr6:22123738-22123757 MsG0680031549.01.T01:intron 45.0%
TCAGTCCACCACATACCATA+TGG + Chr6:22124861-22124880 None:intergenic 45.0%
TCCACCACATACCATATGGT+TGG + Chr6:22124857-22124876 None:intergenic 45.0%
TCGTCTATGGACCAACCATA+TGG - Chr6:22124843-22124862 MsG0680031549.01.T01:CDS 45.0%
TGGACCAACCATATGGTATG+TGG - Chr6:22124850-22124869 MsG0680031549.01.T01:CDS 45.0%
TTGGTGAAAGCTGGAGTTGT+TGG - Chr6:22122879-22122898 MsG0680031549.01.T01:intron 45.0%
! ACTCTTTTCTCTGTGAGGTG+TGG - Chr6:22123823-22123842 MsG0680031549.01.T01:intron 45.0%
! ACTTGGTGAGATGACTTTGG+AGG - Chr6:22122851-22122870 MsG0680031549.01.T01:intron 45.0%
! ATCAGAATGCCCTGCACTTT+TGG - Chr6:22124399-22124418 MsG0680031549.01.T01:intron 45.0%
! GACACTTGGTGAGATGACTT+TGG - Chr6:22122848-22122867 MsG0680031549.01.T01:intron 45.0%
! TCAGAATGCCCTGCACTTTT+GGG - Chr6:22124400-22124419 MsG0680031549.01.T01:intron 45.0%
! TGCCATTCAACAGCCTTTTC+AGG - Chr6:22123079-22123098 MsG0680031549.01.T01:intron 45.0%
!! CACTTGAAGGGCACTTGTTA+AGG + Chr6:22124668-22124687 None:intergenic 45.0%
!! CCCTACAAAACCGGTTTGTA+AGG - Chr6:22125014-22125033 MsG0680031549.01.T01:CDS 45.0%
!! GAAGAAGAGGGGTGTTGATA+GGG - Chr6:22122800-22122819 MsG0680031549.01.T01:intron 45.0%
!! GTTCTGCGGAGCTGATTTTT+AGG + Chr6:22125390-22125409 None:intergenic 45.0%
AAGTGCCCTTAGGGGTTAAG+AGG - Chr6:22124537-22124556 MsG0680031549.01.T01:intron 50.0%
CTGTAAGACCTCGGAACAAG+CGG - Chr6:22124784-22124803 MsG0680031549.01.T01:CDS 50.0%
GAAGAAATGGGGTCACAAGG+TGG - Chr6:22122468-22122487 MsG0680031549.01.T01:CDS 50.0%
GTCACAGGAGATAGAGAAGG+AGG - Chr6:22125341-22125360 MsG0680031549.01.T01:CDS 50.0%
TCGTTCACGAGCAAGAAGAC+AGG - Chr6:22123796-22123815 MsG0680031549.01.T01:intron 50.0%
TGATTCCCGGCAACCTGAAA+AGG + Chr6:22123095-22123114 None:intergenic 50.0%
TGCTGCTGAACAGAATGGAC+CGG + Chr6:22123011-22123030 None:intergenic 50.0%
TGTTGAAGCTGGCGAGGTTT+CGG - Chr6:22122638-22122657 MsG0680031549.01.T01:intron 50.0%
! GCATATGATGCCGGGTTTTG+CGG - Chr6:22123049-22123068 MsG0680031549.01.T01:intron 50.0%
! GGTTGCCGGGAATCAAGTTT+TGG - Chr6:22123100-22123119 MsG0680031549.01.T01:intron 50.0%
!! AGAGGGGTGTTGATAGGGAT+AGG - Chr6:22122805-22122824 MsG0680031549.01.T01:intron 50.0%
!! AGCTGATTTTTAGGCTCGGG+TGG + Chr6:22125381-22125400 None:intergenic 50.0%
!! AGTGTGTGGAGTGTTGAAGC+TGG - Chr6:22122627-22122646 MsG0680031549.01.T01:intron 50.0%
!! CGGAGCTGATTTTTAGGCTC+GGG + Chr6:22125384-22125403 None:intergenic 50.0%
!! GCGGAGCTGATTTTTAGGCT+CGG + Chr6:22125385-22125404 None:intergenic 50.0%
!! GGAAGAAGAGGGGTGTTGAT+AGG - Chr6:22122799-22122818 MsG0680031549.01.T01:intron 50.0%
!! TGATTTTTAGGCTCGGGTGG+TGG + Chr6:22125378-22125397 None:intergenic 50.0%
!!! AACAGCCTTTTCAGGTTGCC+GGG - Chr6:22123087-22123106 MsG0680031549.01.T01:intron 50.0%
!!! CAACAGCCTTTTCAGGTTGC+CGG - Chr6:22123086-22123105 MsG0680031549.01.T01:intron 50.0%
AGTGATGTTGCTGCTGCTGC+TGG - Chr6:22122672-22122691 MsG0680031549.01.T01:intron 55.0%
AGTGCCCTTCAAGTGCCCTA+AGG - Chr6:22124673-22124692 MsG0680031549.01.T01:intron 55.0%
CTGTCGAGAGGAGGCAAAAG+AGG - Chr6:22123747-22123766 MsG0680031549.01.T01:intron 55.0%
GCATGAACTGCCGCAAAACC+CGG + Chr6:22123062-22123081 None:intergenic 55.0%
GCTATGTACCGCTTGTTCCG+AGG + Chr6:22124795-22124814 None:intergenic 55.0%
GCTGGCGAGGTTTCGGATTT+CGG - Chr6:22122645-22122664 MsG0680031549.01.T01:intron 55.0%
GGTCGAAAAAGGGTTGCCTC+TGG - Chr6:22123707-22123726 MsG0680031549.01.T01:intron 55.0%
GTGCCCTTCAAGTGCCCTAA+GGG - Chr6:22124674-22124693 MsG0680031549.01.T01:intron 55.0%
! AGTGCCCTTAGGGCACTTGA+AGG + Chr6:22124681-22124700 None:intergenic 55.0%
! GTGCCCTTAGGGCACTTGAA+GGG + Chr6:22124680-22124699 None:intergenic 55.0%
GGCGAGGTTTCGGATTTCGG+CGG - Chr6:22122648-22122667 MsG0680031549.01.T01:intron 60.0%
!! GTGGAGTGTTGAAGCTGGCG+AGG - Chr6:22122632-22122651 MsG0680031549.01.T01:intron 60.0%
! GGCTCGGGTGGTGGCGCAGT+TGG + Chr6:22125369-22125388 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr6 gene 22122468 22125428 22122468 ID=MsG0680031549.01;Name=MsG0680031549.01
Chr6 mRNA 22122468 22125428 22122468 ID=MsG0680031549.01.T01;Parent=MsG0680031549.01;Name=MsG0680031549.01.T01;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|0.5|0.66|3|0|281
Chr6 exon 22124736 22125428 22124736 ID=MsG0680031549.01.T01:exon:13948;Parent=MsG0680031549.01.T01
Chr6 exon 22123903 22123974 22123903 ID=MsG0680031549.01.T01:exon:13947;Parent=MsG0680031549.01.T01
Chr6 exon 22122468 22122548 22122468 ID=MsG0680031549.01.T01:exon:13946;Parent=MsG0680031549.01.T01
Chr6 CDS 22124736 22125428 22124736 ID=MsG0680031549.01.T01:cds;Parent=MsG0680031549.01.T01
Chr6 CDS 22123903 22123974 22123903 ID=MsG0680031549.01.T01:cds;Parent=MsG0680031549.01.T01
Chr6 CDS 22122468 22122548 22122468 ID=MsG0680031549.01.T01:cds;Parent=MsG0680031549.01.T01
Gene Sequence

>MsG0680031549.01.T01

GAAGAAATGGGGTCACAAGGTGGAACAGTTTCAGAGTCAAAGACTTTACCTTTATCTAGGTCAGGATCTTTGTATAATCTAACACTTGATGAAGTTCAAAACCATCTTGGTAATTTAGGGAAACCACTTGGAAGTATGAATCTTGATGAGTTGCTTAAGAGTGTGTGGAGTGTTGAAGCTGGCGAGGTTTCGGATTTCGGCGGTAGTGATGTTGCTGCTGCTGCTGGTAACATACAGCATAATCAACTTGGTTTGAGTTCACAAGGGAGTTTAACTTTGTCTGGAGATCTTAGTAAGAAAACTGTTGATGAGGTGTGGAAAGATATGCAAGGGAAGAAGAGGGGTGTTGATAGGGATAGGAAATCGCGTGAAAAACAACAGACACTTGGTGAGATGACTTTGGAGGATTTCTTGGTGAAAGCTGGAGTTGTTGGTGAATCTTTTCATAACAATAAGGATGATGGTGGTTTGTTAAGGGTTGATTCGAATGAGGATTCTCGGCATAATGTTTCGCAACATGGTCTTCATTGGATGCAATATCCGGTCCATTCTGTTCAGCAGCAACAACATCAGTATGAAAAGCATATGATGCCGGGTTTTGCGGCAGTTCATGCCATTCAACAGCCTTTTCAGGTTGCCGGGAATCAAGTTTTGGATGCAGCGATATCGCCATCTTCTTTAATGGGTACTACTGCTTATACACAAGAACTGGAACTTAAAGTTTCGCGTTTAGAAGAGGAAAATGAAAGGCTTAGAAGACAGAATGAGATAGAGAAGGAGGTACCAACTGCGCCACCACCCGAGCCTAAAAATCAGCTCCGCAGAACTAATTCAGCATCCTTTTGA

Protein sequence

>MsG0680031549.01.T01

EEMGSQGGTVSESKTLPLSRSGSLYNLTLDEVQNHLGNLGKPLGSMNLDELLKSVWSVEAGEVSDFGGSDVAAAAGNIQHNQLGLSSQGSLTLSGDLSKKTVDEVWKDMQGKKRGVDRDRKSREKQQTLGEMTLEDFLVKAGVVGESFHNNKDDGGLLRVDSNEDSRHNVSQHGLHWMQYPVHSVQQQQHQYEKHMMPGFAAVHAIQQPFQVAGNQVLDAAISPSSLMGTTAYTQELELKVSRLEEENERLRRQNEIEKEVPTAPPPEPKNQLRRTNSASF*