AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028060.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028060.01.T01 MTR_5g069410 99.293 566 4 0 1 566 1 566 0.0 1179
MsG0580028060.01.T01 MTR_8g085780 48.501 567 264 6 14 561 16 573 0.0 565
MsG0580028060.01.T01 MTR_8g106395 23.948 309 190 9 271 553 75 364 6.36e-16 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028060.01.T01 AT4G12700 74.250 567 135 5 1 564 1 559 0.0 894
MsG0580028060.01.T01 AT2G04280 74.692 569 136 6 1 564 1 566 0.0 893
MsG0580028060.01.T01 AT4G08810 47.965 565 254 5 16 561 9 552 0.0 521
MsG0580028060.01.T01 AT3G56750 23.473 311 188 10 271 553 87 375 3.26e-16 81.3
MsG0580028060.01.T01 AT2G41150 22.581 310 193 10 271 553 87 376 4.12e-16 81.3

Find 132 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTACTATTGAGAAGTTTA+AGG 0.240125 5:-73893478 MsG0580028060.01.T01:CDS
TACGTTTAGTGTTGTTAGTA+TGG 0.260774 5:-73893307 MsG0580028060.01.T01:CDS
CAATAGCTTCAAGGTTAAAC+TGG 0.270199 5:-73892636 MsG0580028060.01.T01:CDS
GGTTTCAGACCAGAGAATTT+AGG 0.279478 5:-73893861 MsG0580028060.01.T01:CDS
AAAGGCCATGGCATTTGATT+TGG 0.289925 5:-73892690 MsG0580028060.01.T01:CDS
TTCATCTGGTGGAGGATTAC+AGG 0.293148 5:-73892831 MsG0580028060.01.T01:CDS
GCTTTAATCATGAGAAAGTT+TGG 0.298138 5:-73892775 MsG0580028060.01.T01:CDS
TTTATGTGGGTGGTGGAGAT+AGG 0.323850 5:-73893107 MsG0580028060.01.T01:CDS
ACTCAGTGTGAGGGGAATTC+AGG 0.333650 5:-73893546 MsG0580028060.01.T01:CDS
CCATAACCAATGTTCGGTTT+AGG 0.341807 5:+73893025 None:intergenic
AGTGTTTGTTATTGGTGTTT+TGG 0.342766 5:-73893799 MsG0580028060.01.T01:CDS
ACTCTATACCAATAGTTATC+AGG 0.346554 5:+73892742 None:intergenic
GGATGAAACAAAGGATCTTC+AGG 0.354420 5:+73893747 None:intergenic
TTCACATCCATAAGTTTCAT+TGG 0.367179 5:+73892802 None:intergenic
AGAGAAGACATCGTCGAATC+TGG 0.368044 5:-73893226 MsG0580028060.01.T01:CDS
GGTCACACCAATGAAACTTA+TGG 0.375350 5:-73892809 MsG0580028060.01.T01:CDS
TCAACGAGTATAAGGAACTT+TGG 0.387999 5:-73892408 MsG0580028060.01.T01:CDS
CCTAAACCGAACATTGGTTA+TGG 0.388632 5:-73893025 MsG0580028060.01.T01:CDS
TGTTGGACAAGGATCAGTTT+TGG 0.393147 5:-73892894 MsG0580028060.01.T01:CDS
GAGGTATGTGCATCAAGATT+TGG 0.397669 5:+73892556 None:intergenic
TTGGAAATCGAGGCGATTGA+TGG 0.399764 5:-73892671 MsG0580028060.01.T01:CDS
CAACGAGTATAAGGAACTTT+GGG 0.400281 5:-73892407 MsG0580028060.01.T01:CDS
CAGAATACCATGGCCATGAT+TGG 0.402764 5:-73893837 MsG0580028060.01.T01:CDS
GTGATATGGCGTGGAGGTAT+AGG 0.404031 5:-73893401 MsG0580028060.01.T01:CDS
TGCACTTCTCTCAACCTTAC+GGG 0.405105 5:-73892527 MsG0580028060.01.T01:CDS
AGGTAAATACTTGGTTTATG+TGG 0.409434 5:-73893121 MsG0580028060.01.T01:CDS
GAATGATAGTACCTGTGATA+TGG 0.418806 5:-73893415 MsG0580028060.01.T01:CDS
GCTACTAATGAGTCTGTGTT+TGG 0.419365 5:-73893633 MsG0580028060.01.T01:CDS
GCCGCAGCTTTCCCATCCTT+CGG 0.427555 5:+73893378 None:intergenic
GGCGTTCCAGTAGAATTTGA+TGG 0.427805 5:-73892340 MsG0580028060.01.T01:CDS
TGGAGTTTCTTGTGTGCTCT+AGG 0.434157 5:-73893060 MsG0580028060.01.T01:CDS
GATAACAGTGTTGTGAAAAC+TGG 0.435692 5:-73893669 MsG0580028060.01.T01:CDS
ACGTTTAGTGTTGTTAGTAT+GGG 0.436986 5:-73893306 MsG0580028060.01.T01:CDS
TAGTGTCTGCAATAGCTTCA+AGG 0.440816 5:-73892645 MsG0580028060.01.T01:CDS
TAATAGTGATTAAGAATGTT+GGG 0.441086 5:-73893909 None:intergenic
GGATCAGGTGAATGCGTTGC+CGG 0.441220 5:-73893205 MsG0580028060.01.T01:CDS
TAAATTTGGGAAACCTGTCC+CGG 0.447559 5:-73893442 MsG0580028060.01.T01:CDS
GTATTCTGACCTAAATTCTC+TGG 0.452690 5:+73893852 None:intergenic
CGTTTAGTGTTGTTAGTATG+GGG 0.454205 5:-73893305 MsG0580028060.01.T01:CDS
AATGTTGTAATCTTAGTTGA+AGG 0.455380 5:+73893726 None:intergenic
GTGAATGCGTTGCCGGTTGT+TGG 0.456460 5:-73893198 MsG0580028060.01.T01:CDS
TTCACAAATTCTCCAACAAC+CGG 0.456505 5:+73893186 None:intergenic
ATGTAACCATCAAATTCTAC+TGG 0.457405 5:+73892334 None:intergenic
AGATGGGATGAATCTTCATC+TGG 0.466104 5:-73892845 MsG0580028060.01.T01:CDS
GATTTACACTTCATCGAAGC+AGG 0.470121 5:-73892980 MsG0580028060.01.T01:CDS
GAACTTTCCGACTCAACTAC+AGG 0.470123 5:+73893153 None:intergenic
AGGCGAGGAACAAAGAGCTT+TGG 0.473800 5:-73892579 MsG0580028060.01.T01:CDS
TCAGGGTTCTTACAATCAAT+AGG 0.475567 5:+73893522 None:intergenic
TCATGTTGTGAGAGGGGAAA+AGG 0.479362 5:-73892599 MsG0580028060.01.T01:CDS
TTCGTCAACCTTGTCCCGTA+AGG 0.484068 5:+73892513 None:intergenic
ATCAGACTTAAAAGTAGCAT+TGG 0.486545 5:+73893689 None:intergenic
AAGGTTGAGAGAAGTGCATC+GGG 0.490128 5:+73892532 None:intergenic
TTCTCTGGTCTGAAACCTCC+AGG 0.490679 5:+73893867 None:intergenic
GGCATTTGATTTGGAAATCG+AGG 0.491237 5:-73892681 MsG0580028060.01.T01:CDS
ATGCACTTCTCTCAACCTTA+CGG 0.491937 5:-73892528 MsG0580028060.01.T01:CDS
TTTGGACAGATTGGAGTAAG+TGG 0.497087 5:-73892876 MsG0580028060.01.T01:CDS
ATTTAGTCAAGGTAAATACT+TGG 0.498121 5:-73893130 MsG0580028060.01.T01:CDS
TCAAATCCATAACCAATGTT+CGG 0.500832 5:+73893019 None:intergenic
AGAATACCATGGCCATGATT+GGG 0.502720 5:-73893836 MsG0580028060.01.T01:CDS
GACATCGTCGAATCTGGATC+AGG 0.504087 5:-73893220 MsG0580028060.01.T01:CDS
ATGTCGAGCCTGATAACTAT+TGG 0.506139 5:-73892750 MsG0580028060.01.T01:CDS
AAAACAAACATTCCCAATCA+TGG 0.507885 5:+73893824 None:intergenic
CACTTCATCGAAGCAGGATG+AGG 0.511044 5:-73892974 MsG0580028060.01.T01:CDS
GGTAAATACTTGGTTTATGT+GGG 0.513383 5:-73893120 MsG0580028060.01.T01:CDS
GGATCAAAGAAAGATGCATC+AGG 0.513790 5:+73892460 None:intergenic
GAAGGAGGCGGCATCTGTGT+TGG 0.517714 5:-73892911 MsG0580028060.01.T01:CDS
CTGGTATGAATGCGAGGAAG+AGG 0.518699 5:-73893272 MsG0580028060.01.T01:CDS
ATCTTTCTTTGATCCTCTGA+AGG 0.524319 5:-73892452 MsG0580028060.01.T01:CDS
AGGAAGAAGAATCAGAAGGC+TGG 0.529198 5:-73893252 MsG0580028060.01.T01:CDS
TGGAGGTATAGGCCGAAGGA+TGG 0.536112 5:-73893390 MsG0580028060.01.T01:CDS
TACTTGGTTTATGTGGGTGG+TGG 0.539901 5:-73893114 MsG0580028060.01.T01:CDS
TCTCTCAACCTTACGGGACA+AGG 0.545064 5:-73892521 MsG0580028060.01.T01:CDS
GATACCATCCTTGCAATCAC+TGG 0.552369 5:+73892243 None:intergenic
TTGACCAGTGATTGCAAGGA+TGG 0.552652 5:-73892247 MsG0580028060.01.T01:CDS
GTTTAGTGTTGTTAGTATGG+GGG 0.554390 5:-73893304 MsG0580028060.01.T01:CDS
CTATCATTCGAACCCGGGAC+AGG 0.556337 5:+73893429 None:intergenic
GTTCATTTGTAGCAATGTAG+AGG 0.561206 5:+73892482 None:intergenic
CGGCGAGACTAATGAGGCTG+AGG 0.563477 5:-73893571 MsG0580028060.01.T01:CDS
AAATACTTGGTTTATGTGGG+TGG 0.565916 5:-73893117 MsG0580028060.01.T01:CDS
TATGACTGATGTTGATAACT+CGG 0.569096 5:-73893598 MsG0580028060.01.T01:CDS
ACTCAGTTCATGTTGTGAGA+GGG 0.571566 5:-73892606 MsG0580028060.01.T01:CDS
AGACAGAATCCGTTGTTCAA+AGG 0.574269 5:-73892708 MsG0580028060.01.T01:CDS
GACTCAGTTCATGTTGTGAG+AGG 0.575510 5:-73892607 MsG0580028060.01.T01:CDS
GGCGGCATCTGTGTTGGACA+AGG 0.576333 5:-73892905 MsG0580028060.01.T01:CDS
CAGGTACTATCATTCGAACC+CGG 0.579588 5:+73893423 None:intergenic
TCATCTGGTGGAGGATTACA+GGG 0.582386 5:-73892830 MsG0580028060.01.T01:CDS
ATGCCATGGCCTTTGAACAA+CGG 0.582631 5:+73892699 None:intergenic
GTTGAATACTTATCCTTCAG+AGG 0.583499 5:+73892439 None:intergenic
CAGCCTCCCTGTAGTTGAGT+CGG 0.583590 5:-73893160 MsG0580028060.01.T01:CDS
AATCCGTTGTTCAAAGGCCA+TGG 0.583673 5:-73892702 MsG0580028060.01.T01:CDS
GATGTTGATAACTCGGTTAG+CGG 0.585015 5:-73893591 MsG0580028060.01.T01:CDS
CTCAGTTCATGTTGTGAGAG+GGG 0.585625 5:-73892605 MsG0580028060.01.T01:CDS
TAAGGTTGAGAGAAGTGCAT+CGG 0.587272 5:+73892531 None:intergenic
ATACCTCCACGCCATATCAC+AGG 0.588167 5:+73893404 None:intergenic
AATAGCTTCAAGGTTAAACT+GGG 0.590944 5:-73892635 MsG0580028060.01.T01:CDS
GAGACAACAAAACTCAATAA+CGG 0.592530 5:-73892361 MsG0580028060.01.T01:CDS
GGAGGTATAGGCCGAAGGAT+GGG 0.595782 5:-73893389 MsG0580028060.01.T01:CDS
GGTTAGCGGCGAGACTAATG+AGG 0.597233 5:-73893577 MsG0580028060.01.T01:CDS
TCGGAAAGTTCATTTAGTCA+AGG 0.597241 5:-73893141 MsG0580028060.01.T01:CDS
TGATTTGACCAGTGATTGCA+AGG 0.600244 5:-73892251 MsG0580028060.01.T01:CDS
ATCATACTGGTATGAATGCG+AGG 0.603806 5:-73893278 MsG0580028060.01.T01:CDS
TGGGATGAATCTTCATCTGG+TGG 0.606565 5:-73892842 MsG0580028060.01.T01:CDS
TCATCGAAGCAGGATGAGGA+AGG 0.609494 5:-73892970 MsG0580028060.01.T01:CDS
AAATTTGGGAAACCTGTCCC+GGG 0.610006 5:-73893441 MsG0580028060.01.T01:CDS
TTAGTTGAAGGATGAAACAA+AGG 0.610506 5:+73893738 None:intergenic
GATGAATCTTCATCTGGTGG+AGG 0.613587 5:-73892839 MsG0580028060.01.T01:CDS
CTGAGGTGACTCAGTGTGAG+GGG 0.614034 5:-73893554 MsG0580028060.01.T01:CDS
GGCGTGGAGGTATAGGCCGA+AGG 0.618753 5:-73893394 MsG0580028060.01.T01:CDS
GATTTCCAAATCAAATGCCA+TGG 0.622239 5:+73892685 None:intergenic
AACATTCCCAATCATGGCCA+TGG 0.624245 5:+73893830 None:intergenic
AACTTTCCGACTCAACTACA+GGG 0.628434 5:+73893154 None:intergenic
AGTGATTAAGAATGTTGGGT+CGG 0.631650 5:-73893905 None:intergenic
TCAGTACCTAAACCGAACAT+TGG 0.632278 5:-73893031 MsG0580028060.01.T01:CDS
TTTGGGATGAGACTAGTGAA+TGG 0.636894 5:-73892390 MsG0580028060.01.T01:CDS
AGGTACTATCATTCGAACCC+GGG 0.639825 5:+73893424 None:intergenic
AGAGCATGAATCATTTCCTG+TGG 0.642097 5:-73893080 MsG0580028060.01.T01:CDS
GAGCACACAAGAAACTCCAC+AGG 0.642310 5:+73893064 None:intergenic
GCTGAGGTGACTCAGTGTGA+GGG 0.644517 5:-73893555 MsG0580028060.01.T01:CDS
TTGTGAGAGGGGAAAAGGCG+AGG 0.644621 5:-73892594 MsG0580028060.01.T01:CDS
GGTTGAGAGAAGTGCATCGG+GGG 0.648446 5:+73892534 None:intergenic
TATTGGTATAGAGTCTGCGA+AGG 0.653670 5:-73892733 MsG0580028060.01.T01:CDS
GAAGAGGAAGAAGAATCAGA+AGG 0.658325 5:-73893256 MsG0580028060.01.T01:CDS
GCCGAAGGATGGGAAAGCTG+CGG 0.671173 5:-73893379 MsG0580028060.01.T01:CDS
GGCTGAGGTGACTCAGTGTG+AGG 0.673349 5:-73893556 MsG0580028060.01.T01:CDS
ATAGTACCTGTGATATGGCG+TGG 0.678671 5:-73893410 MsG0580028060.01.T01:CDS
CAGTGTTGTGAAAACTGGTG+AGG 0.689827 5:-73893664 MsG0580028060.01.T01:CDS
TATTGATTGTAAGAACCCTG+AGG 0.692288 5:-73893520 MsG0580028060.01.T01:CDS
TTACGGGACAAGGTTGACGA+AGG 0.696825 5:-73892511 MsG0580028060.01.T01:CDS
GAATTTAGGTCAGAATACCA+TGG 0.698175 5:-73893847 MsG0580028060.01.T01:CDS
GTACCTGTGATATGGCGTGG+AGG 0.742102 5:-73893407 MsG0580028060.01.T01:CDS
AGGTTGAGAGAAGTGCATCG+GGG 0.747201 5:+73892533 None:intergenic
TTTCCGACTCAACTACAGGG+AGG 0.771122 5:+73893157 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTCATTTTTATAAATTT+GGG - Chr5:73892655-73892674 MsG0580028060.01.T01:CDS 10.0%
!!! GATGTTCATTTTTATAAATT+TGG - Chr5:73892654-73892673 MsG0580028060.01.T01:CDS 15.0%
! AATGTTGTAATCTTAGTTGA+AGG + Chr5:73892387-73892406 None:intergenic 25.0%
! ATTTAGTCAAGGTAAATACT+TGG - Chr5:73892980-73892999 MsG0580028060.01.T01:CDS 25.0%
!! CATTTTATAAGGATTATAGG+AGG - Chr5:73892754-73892773 MsG0580028060.01.T01:CDS 25.0%
!!! TGTTTTGGTTTTCACTATTA+TGG - Chr5:73892326-73892345 MsG0580028060.01.T01:CDS 25.0%
!!! TGTTTTTCAGTGTTTGTTAT+TGG - Chr5:73892303-73892322 MsG0580028060.01.T01:CDS 25.0%
AAAACAAACATTCCCAATCA+TGG + Chr5:73892289-73892308 None:intergenic 30.0%
AATAGCTTCAAGGTTAAACT+GGG - Chr5:73893475-73893494 MsG0580028060.01.T01:CDS 30.0%
ACTCTATACCAATAGTTATC+AGG + Chr5:73893371-73893390 None:intergenic 30.0%
AGGTAAATACTTGGTTTATG+TGG - Chr5:73892989-73893008 MsG0580028060.01.T01:CDS 30.0%
ATCAGACTTAAAAGTAGCAT+TGG + Chr5:73892424-73892443 None:intergenic 30.0%
ATCATCAAATGAAAAACCTC+AGG + Chr5:73892609-73892628 None:intergenic 30.0%
ATGTAACCATCAAATTCTAC+TGG + Chr5:73893779-73893798 None:intergenic 30.0%
CAAAAACACTTCTGTATCAA+TGG + Chr5:73893810-73893829 None:intergenic 30.0%
GAGACAACAAAACTCAATAA+CGG - Chr5:73893749-73893768 MsG0580028060.01.T01:CDS 30.0%
GCTTTAATCATGAGAAAGTT+TGG - Chr5:73893335-73893354 MsG0580028060.01.T01:CDS 30.0%
GGTAAATACTTGGTTTATGT+GGG - Chr5:73892990-73893009 MsG0580028060.01.T01:CDS 30.0%
TCAAATCCATAACCAATGTT+CGG + Chr5:73893094-73893113 None:intergenic 30.0%
TCATCAAATGAAAAACCTCA+GGG + Chr5:73892608-73892627 None:intergenic 30.0%
TTAGTTGAAGGATGAAACAA+AGG + Chr5:73892375-73892394 None:intergenic 30.0%
TTCACATCCATAAGTTTCAT+TGG + Chr5:73893311-73893330 None:intergenic 30.0%
! ACGTTTAGTGTTGTTAGTAT+GGG - Chr5:73892804-73892823 MsG0580028060.01.T01:CDS 30.0%
! CGGCATTTTATAAGGATTAT+AGG - Chr5:73892751-73892770 MsG0580028060.01.T01:CDS 30.0%
! TACGTTTAGTGTTGTTAGTA+TGG - Chr5:73892803-73892822 MsG0580028060.01.T01:CDS 30.0%
! TCATTTTCTCAACGAGTATA+AGG - Chr5:73893694-73893713 MsG0580028060.01.T01:CDS 30.0%
!! CTTTGATTTTGAGCATTTGA+AGG - Chr5:73893181-73893200 MsG0580028060.01.T01:CDS 30.0%
!! TATGACTGATGTTGATAACT+CGG - Chr5:73892512-73892531 MsG0580028060.01.T01:CDS 30.0%
!!! AGGTTTTTCATTTGATGATG+AGG - Chr5:73892610-73892629 MsG0580028060.01.T01:CDS 30.0%
!!! AGTGTTTGTTATTGGTGTTT+TGG - Chr5:73892311-73892330 MsG0580028060.01.T01:CDS 30.0%
!!! GGTTTTTCATTTGATGATGA+GGG - Chr5:73892611-73892630 MsG0580028060.01.T01:CDS 30.0%
!!! GTTATTGAGTTTTGTTGTCT+CGG + Chr5:73893750-73893769 None:intergenic 30.0%
AAATACTTGGTTTATGTGGG+TGG - Chr5:73892993-73893012 MsG0580028060.01.T01:CDS 35.0%
AGTAAGTGGCAACAAAAAGA+TGG - Chr5:73893248-73893267 MsG0580028060.01.T01:CDS 35.0%
ATCTTTCTTTGATCCTCTGA+AGG - Chr5:73893658-73893677 MsG0580028060.01.T01:CDS 35.0%
CAACGAGTATAAGGAACTTT+GGG - Chr5:73893703-73893722 MsG0580028060.01.T01:CDS 35.0%
CAATAGCTTCAAGGTTAAAC+TGG - Chr5:73893474-73893493 MsG0580028060.01.T01:CDS 35.0%
GAATGATAGTACCTGTGATA+TGG - Chr5:73892695-73892714 MsG0580028060.01.T01:CDS 35.0%
GAATTTAGGTCAGAATACCA+TGG - Chr5:73892263-73892282 MsG0580028060.01.T01:CDS 35.0%
GATAACAGTGTTGTGAAAAC+TGG - Chr5:73892441-73892460 MsG0580028060.01.T01:CDS 35.0%
GATTTCCAAATCAAATGCCA+TGG + Chr5:73893428-73893447 None:intergenic 35.0%
GGCTACTATTGAGAAGTTTA+AGG - Chr5:73892632-73892651 MsG0580028060.01.T01:CDS 35.0%
GTAAGTGGCAACAAAAAGAT+GGG - Chr5:73893249-73893268 MsG0580028060.01.T01:CDS 35.0%
GTATTCTGACCTAAATTCTC+TGG + Chr5:73892261-73892280 None:intergenic 35.0%
GTTCATTTGTAGCAATGTAG+AGG + Chr5:73893631-73893650 None:intergenic 35.0%
GTTGAATACTTATCCTTCAG+AGG + Chr5:73893674-73893693 None:intergenic 35.0%
TCAACGAGTATAAGGAACTT+TGG - Chr5:73893702-73893721 MsG0580028060.01.T01:CDS 35.0%
TCAGGGTTCTTACAATCAAT+AGG + Chr5:73892591-73892610 None:intergenic 35.0%
TCGGAAAGTTCATTTAGTCA+AGG - Chr5:73892969-73892988 MsG0580028060.01.T01:CDS 35.0%
TTCACAAATTCTCCAACAAC+CGG + Chr5:73892927-73892946 None:intergenic 35.0%
! ATGAGGAAGGCAAAGATTTT+AGG - Chr5:73893153-73893172 MsG0580028060.01.T01:CDS 35.0%
! CGTTTAGTGTTGTTAGTATG+GGG - Chr5:73892805-73892824 MsG0580028060.01.T01:CDS 35.0%
! GAAAACTGGTGAGGATTTTA+TGG - Chr5:73892455-73892474 MsG0580028060.01.T01:CDS 35.0%
! GTTTAGTGTTGTTAGTATGG+GGG - Chr5:73892806-73892825 MsG0580028060.01.T01:CDS 35.0%
! TATTGATTGTAAGAACCCTG+AGG - Chr5:73892590-73892609 MsG0580028060.01.T01:CDS 35.0%
! TGATTTTGAGCATTTGAAGG+AGG - Chr5:73893184-73893203 MsG0580028060.01.T01:CDS 35.0%
!!! GATACAGAAGTGTTTTTGAG+AGG - Chr5:73893812-73893831 MsG0580028060.01.T01:CDS 35.0%
AAAGGCCATGGCATTTGATT+TGG - Chr5:73893420-73893439 MsG0580028060.01.T01:CDS 40.0%
AACTTTCCGACTCAACTACA+GGG + Chr5:73892959-73892978 None:intergenic 40.0%
ACTCAGTTCATGTTGTGAGA+GGG - Chr5:73893504-73893523 MsG0580028060.01.T01:CDS 40.0%
AGAATACCATGGCCATGATT+GGG - Chr5:73892274-73892293 MsG0580028060.01.T01:CDS 40.0%
AGACAGAATCCGTTGTTCAA+AGG - Chr5:73893402-73893421 MsG0580028060.01.T01:CDS 40.0%
AGAGCATGAATCATTTCCTG+TGG - Chr5:73893030-73893049 MsG0580028060.01.T01:CDS 40.0%
AGATGGGATGAATCTTCATC+TGG - Chr5:73893265-73893284 MsG0580028060.01.T01:CDS 40.0%
AGTATGGGGGATTATCATAC+TGG - Chr5:73892819-73892838 MsG0580028060.01.T01:CDS 40.0%
ATCATACTGGTATGAATGCG+AGG - Chr5:73892832-73892851 MsG0580028060.01.T01:CDS 40.0%
ATGCACTTCTCTCAACCTTA+CGG - Chr5:73893582-73893601 MsG0580028060.01.T01:CDS 40.0%
ATGTCGAGCCTGATAACTAT+TGG - Chr5:73893360-73893379 MsG0580028060.01.T01:CDS 40.0%
CCATAACCAATGTTCGGTTT+AGG + Chr5:73893088-73893107 None:intergenic 40.0%
GAAGAGGAAGAAGAATCAGA+AGG - Chr5:73892854-73892873 MsG0580028060.01.T01:CDS 40.0%
GAGGTATGTGCATCAAGATT+TGG + Chr5:73893557-73893576 None:intergenic 40.0%
GATTTACACTTCATCGAAGC+AGG - Chr5:73893130-73893149 MsG0580028060.01.T01:CDS 40.0%
GCTACTAATGAGTCTGTGTT+TGG - Chr5:73892477-73892496 MsG0580028060.01.T01:CDS 40.0%
GGATCAAAGAAAGATGCATC+AGG + Chr5:73893653-73893672 None:intergenic 40.0%
GGATGAAACAAAGGATCTTC+AGG + Chr5:73892366-73892385 None:intergenic 40.0%
GGTCACACCAATGAAACTTA+TGG - Chr5:73893301-73893320 MsG0580028060.01.T01:CDS 40.0%
GGTTTCAGACCAGAGAATTT+AGG - Chr5:73892249-73892268 MsG0580028060.01.T01:CDS 40.0%
TAAATTTGGGAAACCTGTCC+CGG - Chr5:73892668-73892687 MsG0580028060.01.T01:CDS 40.0%
TAGTGTCTGCAATAGCTTCA+AGG - Chr5:73893465-73893484 MsG0580028060.01.T01:CDS 40.0%
TATTGGTATAGAGTCTGCGA+AGG - Chr5:73893377-73893396 MsG0580028060.01.T01:CDS 40.0%
TCAGTACCTAAACCGAACAT+TGG - Chr5:73893079-73893098 MsG0580028060.01.T01:CDS 40.0%
TGATTTGACCAGTGATTGCA+AGG - Chr5:73893859-73893878 MsG0580028060.01.T01:CDS 40.0%
TTTGGACAGATTGGAGTAAG+TGG - Chr5:73893234-73893253 MsG0580028060.01.T01:CDS 40.0%
! CCTAAACCGAACATTGGTTA+TGG - Chr5:73893085-73893104 MsG0580028060.01.T01:CDS 40.0%
! GAAAGCTGCGGCATTTTATA+AGG - Chr5:73892743-73892762 MsG0580028060.01.T01:CDS 40.0%
! TAAGGTTGAGAGAAGTGCAT+CGG + Chr5:73893582-73893601 None:intergenic 40.0%
! TGTTGGACAAGGATCAGTTT+TGG - Chr5:73893216-73893235 MsG0580028060.01.T01:CDS 40.0%
! TTTGGGATGAGACTAGTGAA+TGG - Chr5:73893720-73893739 MsG0580028060.01.T01:CDS 40.0%
! TTTTGAGCATTTGAAGGAGG+CGG - Chr5:73893187-73893206 MsG0580028060.01.T01:CDS 40.0%
!! GATGTTGATAACTCGGTTAG+CGG - Chr5:73892519-73892538 MsG0580028060.01.T01:CDS 40.0%
!! GGCATTTGATTTGGAAATCG+AGG - Chr5:73893429-73893448 MsG0580028060.01.T01:CDS 40.0%
!!! AGGATCAGTTTTGGACAGAT+TGG - Chr5:73893225-73893244 MsG0580028060.01.T01:CDS 40.0%
AAATTTGGGAAACCTGTCCC+GGG - Chr5:73892669-73892688 MsG0580028060.01.T01:CDS 45.0%
AACATTCCCAATCATGGCCA+TGG + Chr5:73892283-73892302 None:intergenic 45.0%
AATCCGTTGTTCAAAGGCCA+TGG - Chr5:73893408-73893427 MsG0580028060.01.T01:CDS 45.0%
AGAGAAGACATCGTCGAATC+TGG - Chr5:73892884-73892903 MsG0580028060.01.T01:CDS 45.0%
AGGAAGAAGAATCAGAAGGC+TGG - Chr5:73892858-73892877 MsG0580028060.01.T01:CDS 45.0%
AGGTACTATCATTCGAACCC+GGG + Chr5:73892689-73892708 None:intergenic 45.0%
ATAGTACCTGTGATATGGCG+TGG - Chr5:73892700-73892719 MsG0580028060.01.T01:CDS 45.0%
ATGCCATGGCCTTTGAACAA+CGG + Chr5:73893414-73893433 None:intergenic 45.0%
CAGAATACCATGGCCATGAT+TGG - Chr5:73892273-73892292 MsG0580028060.01.T01:CDS 45.0%
CAGGTACTATCATTCGAACC+CGG + Chr5:73892690-73892709 None:intergenic 45.0%
CAGTGTTGTGAAAACTGGTG+AGG - Chr5:73892446-73892465 MsG0580028060.01.T01:CDS 45.0%
CTCAGTTCATGTTGTGAGAG+GGG - Chr5:73893505-73893524 MsG0580028060.01.T01:CDS 45.0%
GAACTTTCCGACTCAACTAC+AGG + Chr5:73892960-73892979 None:intergenic 45.0%
GACTCAGTTCATGTTGTGAG+AGG - Chr5:73893503-73893522 MsG0580028060.01.T01:CDS 45.0%
GATACCATCCTTGCAATCAC+TGG + Chr5:73893870-73893889 None:intergenic 45.0%
GATGAATCTTCATCTGGTGG+AGG - Chr5:73893271-73893290 MsG0580028060.01.T01:CDS 45.0%
GGCGTTCCAGTAGAATTTGA+TGG - Chr5:73893770-73893789 MsG0580028060.01.T01:CDS 45.0%
TACTTGGTTTATGTGGGTGG+TGG - Chr5:73892996-73893015 MsG0580028060.01.T01:CDS 45.0%
TCATCTGGTGGAGGATTACA+GGG - Chr5:73893280-73893299 MsG0580028060.01.T01:CDS 45.0%
TCATGTTGTGAGAGGGGAAA+AGG - Chr5:73893511-73893530 MsG0580028060.01.T01:CDS 45.0%
TGCACTTCTCTCAACCTTAC+GGG - Chr5:73893583-73893602 MsG0580028060.01.T01:CDS 45.0%
TGGAGTTTCTTGTGTGCTCT+AGG - Chr5:73893050-73893069 MsG0580028060.01.T01:CDS 45.0%
TGGGATGAATCTTCATCTGG+TGG - Chr5:73893268-73893287 MsG0580028060.01.T01:CDS 45.0%
TTCATCTGGTGGAGGATTAC+AGG - Chr5:73893279-73893298 MsG0580028060.01.T01:CDS 45.0%
TTGACCAGTGATTGCAAGGA+TGG - Chr5:73893863-73893882 MsG0580028060.01.T01:CDS 45.0%
TTGGAAATCGAGGCGATTGA+TGG - Chr5:73893439-73893458 MsG0580028060.01.T01:CDS 45.0%
! AAGGTTGAGAGAAGTGCATC+GGG + Chr5:73893581-73893600 None:intergenic 45.0%
! TCTGCATTTTCTAGACCTGG+AGG - Chr5:73892228-73892247 MsG0580028060.01.T01:CDS 45.0%
!! TTTATGTGGGTGGTGGAGAT+AGG - Chr5:73893003-73893022 MsG0580028060.01.T01:CDS 45.0%
ACTCAGTGTGAGGGGAATTC+AGG - Chr5:73892564-73892583 MsG0580028060.01.T01:CDS 50.0%
AGGCGAGGAACAAAGAGCTT+TGG - Chr5:73893531-73893550 MsG0580028060.01.T01:CDS 50.0%
ATACCTCCACGCCATATCAC+AGG + Chr5:73892709-73892728 None:intergenic 50.0%
CACTTCATCGAAGCAGGATG+AGG - Chr5:73893136-73893155 MsG0580028060.01.T01:CDS 50.0%
CTGGTATGAATGCGAGGAAG+AGG - Chr5:73892838-73892857 MsG0580028060.01.T01:CDS 50.0%
GACATCGTCGAATCTGGATC+AGG - Chr5:73892890-73892909 MsG0580028060.01.T01:CDS 50.0%
GAGCACACAAGAAACTCCAC+AGG + Chr5:73893049-73893068 None:intergenic 50.0%
TCATCGAAGCAGGATGAGGA+AGG - Chr5:73893140-73893159 MsG0580028060.01.T01:CDS 50.0%
TCTCTCAACCTTACGGGACA+AGG - Chr5:73893589-73893608 MsG0580028060.01.T01:CDS 50.0%
TTACGGGACAAGGTTGACGA+AGG - Chr5:73893599-73893618 MsG0580028060.01.T01:CDS 50.0%
TTCGTCAACCTTGTCCCGTA+AGG + Chr5:73893600-73893619 None:intergenic 50.0%
TTTCCGACTCAACTACAGGG+AGG + Chr5:73892956-73892975 None:intergenic 50.0%
! AGGTTGAGAGAAGTGCATCG+GGG + Chr5:73893580-73893599 None:intergenic 50.0%
! CGGTCTGCATTTTCTAGACC+TGG - Chr5:73892225-73892244 MsG0580028060.01.T01:CDS 50.0%
! GTGATATGGCGTGGAGGTAT+AGG - Chr5:73892709-73892728 MsG0580028060.01.T01:CDS 50.0%
! TTCTCTGGTCTGAAACCTCC+AGG + Chr5:73892246-73892265 None:intergenic 50.0%
CAGCCTCCCTGTAGTTGAGT+CGG - Chr5:73892950-73892969 MsG0580028060.01.T01:CDS 55.0%
CTATCATTCGAACCCGGGAC+AGG + Chr5:73892684-73892703 None:intergenic 55.0%
CTGAGGTGACTCAGTGTGAG+GGG - Chr5:73892556-73892575 MsG0580028060.01.T01:CDS 55.0%
GCTGAGGTGACTCAGTGTGA+GGG - Chr5:73892555-73892574 MsG0580028060.01.T01:CDS 55.0%
GGATCAGGTGAATGCGTTGC+CGG - Chr5:73892905-73892924 MsG0580028060.01.T01:CDS 55.0%
GGTTAGCGGCGAGACTAATG+AGG - Chr5:73892533-73892552 MsG0580028060.01.T01:CDS 55.0%
GTACCTGTGATATGGCGTGG+AGG - Chr5:73892703-73892722 MsG0580028060.01.T01:CDS 55.0%
TTGTGAGAGGGGAAAAGGCG+AGG - Chr5:73893516-73893535 MsG0580028060.01.T01:CDS 55.0%
! GGAGGTATAGGCCGAAGGAT+GGG - Chr5:73892721-73892740 MsG0580028060.01.T01:CDS 55.0%
! GGTTGAGAGAAGTGCATCGG+GGG + Chr5:73893579-73893598 None:intergenic 55.0%
! GTGAATGCGTTGCCGGTTGT+TGG - Chr5:73892912-73892931 MsG0580028060.01.T01:CDS 55.0%
! TGGAGGTATAGGCCGAAGGA+TGG - Chr5:73892720-73892739 MsG0580028060.01.T01:CDS 55.0%
CGGCGAGACTAATGAGGCTG+AGG - Chr5:73892539-73892558 MsG0580028060.01.T01:CDS 60.0%
GAAGGAGGCGGCATCTGTGT+TGG - Chr5:73893199-73893218 MsG0580028060.01.T01:CDS 60.0%
GCCGAAGGATGGGAAAGCTG+CGG - Chr5:73892731-73892750 MsG0580028060.01.T01:CDS 60.0%
GCCGCAGCTTTCCCATCCTT+CGG + Chr5:73892735-73892754 None:intergenic 60.0%
GGCGGCATCTGTGTTGGACA+AGG - Chr5:73893205-73893224 MsG0580028060.01.T01:CDS 60.0%
GGCTGAGGTGACTCAGTGTG+AGG - Chr5:73892554-73892573 MsG0580028060.01.T01:CDS 60.0%
! TGAGAGAAGTGCATCGGGGG+AGG + Chr5:73893576-73893595 None:intergenic 60.0%
! GGCGTGGAGGTATAGGCCGA+AGG - Chr5:73892716-73892735 MsG0580028060.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 73892216 73893916 73892216 ID=MsG0580028060.01;Name=MsG0580028060.01
Chr5 mRNA 73892216 73893916 73892216 ID=MsG0580028060.01.T01;Parent=MsG0580028060.01;Name=MsG0580028060.01.T01;_AED=0.17;_eAED=0.17;_QI=0|-1|0|1|-1|1|1|0|566
Chr5 exon 73892216 73893916 73892216 ID=MsG0580028060.01.T01:exon:23644;Parent=MsG0580028060.01.T01
Chr5 CDS 73892216 73893916 73892216 ID=MsG0580028060.01.T01:cds;Parent=MsG0580028060.01.T01
Gene Sequence

>MsG0580028060.01.T01

ATGTTGGGTCGGTCTGCATTTTCTAGACCTGGAGGTTTCAGACCAGAGAATTTAGGTCAGAATACCATGGCCATGATTGGGAATGTTTGTTTTTCAGTGTTTGTTATTGGTGTTTTGGTTTTCACTATTATGGCTGCTACTTATGAACCTGAAGATCCTTTGTTTCATCCTTCAACTAAGATTACAACATTGTTCACTTCTAAGTCCAATGCTACTTTTAAGTCTGATAACAGTGTTGTGAAAACTGGTGAGGATTTTATGGCTACTAATGAGTCTGTGTTTGGCTCTATTCTTAATATGACTGATGTTGATAACTCGGTTAGCGGCGAGACTAATGAGGCTGAGGTGACTCAGTGTGAGGGGAATTCAGGTCCTATTGATTGTAAGAACCCTGAGGTTTTTCATTTGATGATGAGGGCTACTATTGAGAAGTTTAAGGATGTTCATTTTTATAAATTTGGGAAACCTGTCCCGGGTTCGAATGATAGTACCTGTGATATGGCGTGGAGGTATAGGCCGAAGGATGGGAAAGCTGCGGCATTTTATAAGGATTATAGGAGGTTTGTGATTGAAAAGTATGAGAATTGTACGTTTAGTGTTGTTAGTATGGGGGATTATCATACTGGTATGAATGCGAGGAAGAGGAAGAAGAATCAGAAGGCTGGACTAGAGAAGACATCGTCGAATCTGGATCAGGTGAATGCGTTGCCGGTTGTTGGAGAATTTGTGAATGACAGCCTCCCTGTAGTTGAGTCGGAAAGTTCATTTAGTCAAGGTAAATACTTGGTTTATGTGGGTGGTGGAGATAGGTGTAAGAGCATGAATCATTTCCTGTGGAGTTTCTTGTGTGCTCTAGGAGAAGCTCAGTACCTAAACCGAACATTGGTTATGGATTTGAGCATATGTCTGTCTTCGATTTACACTTCATCGAAGCAGGATGAGGAAGGCAAAGATTTTAGGTTTTACTTTGATTTTGAGCATTTGAAGGAGGCGGCATCTGTGTTGGACAAGGATCAGTTTTGGACAGATTGGAGTAAGTGGCAACAAAAAGATGGGATGAATCTTCATCTGGTGGAGGATTACAGGGTCACACCAATGAAACTTATGGATGTGAAAGATGCTTTAATCATGAGAAAGTTTGGAGATGTCGAGCCTGATAACTATTGGTATAGAGTCTGCGAAGGAGAGACAGAATCCGTTGTTCAAAGGCCATGGCATTTGATTTGGAAATCGAGGCGATTGATGGAAATAGTGTCTGCAATAGCTTCAAGGTTAAACTGGGATTATGACTCAGTTCATGTTGTGAGAGGGGAAAAGGCGAGGAACAAAGAGCTTTGGCCAAATCTTGATGCACATACCTCCCCCGATGCACTTCTCTCAACCTTACGGGACAAGGTTGACGAAGGAAGAAACCTCTACATTGCTACAAATGAACCTGATGCATCTTTCTTTGATCCTCTGAAGGATAAGTATTCAACTCATTTTCTCAACGAGTATAAGGAACTTTGGGATGAGACTAGTGAATGGTACTCCGAGACAACAAAACTCAATAACGGCGTTCCAGTAGAATTTGATGGTTACATGAGAGTATCCATTGATACAGAAGTGTTTTTGAGAGGTAAGAAGCAACTTGAAACTTTCAATGATTTGACCAGTGATTGCAAGGATGGTATCAATACATGTAATGTTGCTGAAAACTAA

Protein sequence

>MsG0580028060.01.T01

MLGRSAFSRPGGFRPENLGQNTMAMIGNVCFSVFVIGVLVFTIMAATYEPEDPLFHPSTKITTLFTSKSNATFKSDNSVVKTGEDFMATNESVFGSILNMTDVDNSVSGETNEAEVTQCEGNSGPIDCKNPEVFHLMMRATIEKFKDVHFYKFGKPVPGSNDSTCDMAWRYRPKDGKAAAFYKDYRRFVIEKYENCTFSVVSMGDYHTGMNARKRKKNQKAGLEKTSSNLDQVNALPVVGEFVNDSLPVVESESSFSQGKYLVYVGGGDRCKSMNHFLWSFLCALGEAQYLNRTLVMDLSICLSSIYTSSKQDEEGKDFRFYFDFEHLKEAASVLDKDQFWTDWSKWQQKDGMNLHLVEDYRVTPMKLMDVKDALIMRKFGDVEPDNYWYRVCEGETESVVQRPWHLIWKSRRLMEIVSAIASRLNWDYDSVHVVRGEKARNKELWPNLDAHTSPDALLSTLRDKVDEGRNLYIATNEPDASFFDPLKDKYSTHFLNEYKELWDETSEWYSETTKLNNGVPVEFDGYMRVSIDTEVFLRGKKQLETFNDLTSDCKDGINTCNVAEN*