AlfalfaGEDB | MsG0580026075.01

M. sativa cultivar ZhongmuNo.1 / MsG0580026075.01

KEGG: K09338
GO: GO:0003677 GO:0006355 GO:0043565
PFAM: PF00046

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026075.01.T01	GAU19668.1	90.11	91	8	1	2	91	60	150	9.38E-50	165

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026075.01.T01	Q8LC03	85.882	85	11	1	8	91	72	156	3.02E-45	150

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026075.01.T01	A0A2Z6MBC4	90.110	91	8	1	2	91	60	150	4.48e-50	165

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TFs/TRs:

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Gene ID	Type	Classification
MsG0580026075.01.T01	TF	HB-other

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048856.01	MsG0580026075.01	0.828634	8.060399e-55	8.057549e-52
MsG0180000001.01	MsG0580026075.01	0.804146	2.485289e-49	1.271834e-46
MsG0180000144.01	MsG0580026075.01	0.807030	6.168814e-50	3.399677e-47
MsG0180000145.01	MsG0580026075.01	0.811253	7.677701e-51	4.729451e-48
MsG0180000178.01	MsG0580026075.01	0.832857	7.441254e-56	8.421793e-53
MsG0180000195.01	MsG0580026075.01	0.829136	6.094817e-55	6.182712e-52
MsG0180000334.01	MsG0580026075.01	0.811744	6.005185e-51	3.747425e-48
MsG0180000470.01	MsG0580026075.01	0.805726	1.161684e-49	6.191942e-47
MsG0180000836.01	MsG0580026075.01	0.807692	4.464900e-50	2.503261e-47
MsG0180001173.01	MsG0580026075.01	0.824757	6.788671e-54	6.069291e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026075.01.T01	MTR_5g039000	91.209	91	7	1	2	91	58	148	1.47e-52	166
MsG0580026075.01.T01	MTR_8g468210	89.412	85	8	1	8	91	64	148	6.02e-48	154
MsG0580026075.01.T01	MTR_6g011610	73.563	87	20	2	8	91	62	148	1.67e-37	126
MsG0580026075.01.T01	MTR_6g011610	73.563	87	20	2	8	91	81	167	1.99e-37	127
MsG0580026075.01.T01	MTR_7g010020	66.279	86	27	2	8	91	66	151	9.06e-34	117
MsG0580026075.01.T01	MTR_6g007647	72.368	76	20	1	17	91	29	104	8.67e-31	109
MsG0580026075.01.T01	MTR_3g080100	63.636	88	31	1	5	91	4	91	1.12e-30	107
MsG0580026075.01.T01	MTR_3g080100	63.636	88	31	1	5	91	43	130	2.33e-30	108
MsG0580026075.01.T01	MTR_6g007647	72.368	76	20	1	17	91	63	138	2.61e-30	108
MsG0580026075.01.T01	MTR_8g089895	63.953	86	28	2	9	91	40	125	3.66e-30	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026075.01.T01	AT1G69780	85.882	85	11	1	8	91	72	156	3.08e-46	150
MsG0580026075.01.T01	AT5G15150	71.277	94	23	3	2	91	93	186	1.30e-39	133
MsG0580026075.01.T01	AT1G26960	73.256	86	22	1	7	91	57	142	6.14e-38	127
MsG0580026075.01.T01	AT3G01220	65.591	93	29	2	2	91	66	158	2.35e-37	127
MsG0580026075.01.T01	AT5G65310	68.132	91	25	2	7	93	37	127	1.42e-32	114
MsG0580026075.01.T01	AT5G65310	68.132	91	25	2	7	93	55	145	1.74e-32	115
MsG0580026075.01.T01	AT4G40060	75.342	73	17	1	20	91	58	130	9.50e-31	110
MsG0580026075.01.T01	AT2G22430	75.342	73	17	1	20	91	61	133	9.77e-31	110
MsG0580026075.01.T01	AT3G01470	71.053	76	21	1	17	91	64	139	1.52e-29	106
MsG0580026075.01.T01	AT2G46680	56.944	72	30	1	22	92	33	104	3.96e-22	86.7

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Find 13 sgRNAs with CRISPR-Local

Find 14 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCATATAGCAACTTGTCT+AGG	0.569003	5:+30220698	None:intergenic
AACCTAGACAAGTTGCTATA+TGG	0.331625	5:-30220700	MsG0580026075.01.T01:CDS
AACTTGAAAGAGTTTGAACT+TGG	0.505947	5:-30220776	MsG0580026075.01.T01:CDS
AAGCTGGAGAGAAGAAGAGG+AGG	0.613532	5:-30220820	MsG0580026075.01.T01:CDS
CACAAGCTGGAGAGAAGAAG+AGG	0.557400	5:-30220823	MsG0580026075.01.T01:CDS
CTATATGGTTTCAAAATAGA+AGG	0.336540	5:-30220685	MsG0580026075.01.T01:CDS
GAAGAAGAGGAGGCTTAATA+TGG	0.330137	5:-30220810	MsG0580026075.01.T01:CDS
GAAGAAGATTTATCAGATGA+TGG	0.488868	5:-30220848	MsG0580026075.01.T01:CDS
GTAATAAGCTTGAGCCTGAG+AGG	0.611232	5:-30220754	MsG0580026075.01.T01:CDS
TAGATGGAAGACAAAGCAGT+TGG	0.627956	5:-30220660	MsG0580026075.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTTGAAAGAGTTTGAACT+TGG	-	Chr5:30220703-30220722	MsG0580026075.01.T01:CDS	30.0%
GAAGAAGATTTATCAGATGA+TGG	-	Chr5:30220631-30220650	MsG0580026075.01.T01:CDS	30.0%
AACCATATAGCAACTTGTCT+AGG	+	Chr5:30220784-30220803	None:intergenic	35.0%
AACCTAGACAAGTTGCTATA+TGG	-	Chr5:30220779-30220798	MsG0580026075.01.T01:CDS	35.0%
TTCAAAATAGAAGGGCTAGA+TGG	-	Chr5:30220803-30220822	MsG0580026075.01.T01:CDS	35.0%
GAAGAAGAGGAGGCTTAATA+TGG	-	Chr5:30220669-30220688	MsG0580026075.01.T01:CDS	40.0%
TAGATGGAAGACAAAGCAGT+TGG	-	Chr5:30220819-30220838	MsG0580026075.01.T01:CDS	40.0%
GTAATAAGCTTGAGCCTGAG+AGG	-	Chr5:30220725-30220744	MsG0580026075.01.T01:CDS	45.0%
AAGCTGGAGAGAAGAAGAGG+AGG	-	Chr5:30220659-30220678	MsG0580026075.01.T01:CDS	50.0%
CACAAGCTGGAGAGAAGAAG+AGG	-	Chr5:30220656-30220675	MsG0580026075.01.T01:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	30220610	30220891	30220610	ID=MsG0580026075.01;Name=MsG0580026075.01
Chr5	mRNA	30220610	30220891	30220610	ID=MsG0580026075.01.T01;Parent=MsG0580026075.01;Name=MsG0580026075.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|93
Chr5	exon	30220610	30220891	30220610	ID=MsG0580026075.01.T01:exon:7274;Parent=MsG0580026075.01.T01
Chr5	CDS	30220610	30220891	30220610	ID=MsG0580026075.01.T01:cds;Parent=MsG0580026075.01.T01

Gene Sequence	>MsG0580026075.01.T01 CTGGAGAAGAAGAAAATCTCTGAAGAAGATTTATCAGATGATGGATCACAAGCTGGAGAGAAGAAGAGGAGGCTTAATATGGAACAAGTGAAGAACTTGAAAGAGTTTGAACTTGGTAATAAGCTTGAGCCTGAGAGGAAAATGCAGCTTGCAAGAGCTCTTAACTTGCAACCTAGACAAGTTGCTATATGGTTTCAAAATAGAAGGGCTAGATGGAAGACAAAGCAGTTGGAAAAAGACTATGATGTTCGTAAAAGACAATATGATGCTATAAGTAGATAA
Protein sequence	>MsG0580026075.01.T01 LEKKKISEEDLSDDGSQAGEKKRRLNMEQVKNLKEFELGNKLEPERKMQLARALNLQPRQVAIWFQNRRARWKTKQLEKDYDVRKRQYDAISR*