AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000836.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000836.01.T01 MTR_1g007460 89.464 541 30 2 1 514 1 541 0.0 983
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000836.01.T01 AT5G05240 40.240 333 163 9 188 496 85 405 4.58e-64 216
MsG0180000836.01.T01 AT5G05240 40.240 333 163 9 188 496 144 464 2.37e-63 216
MsG0180000836.01.T01 AT2G40630 34.451 328 140 12 199 501 203 480 1.96e-40 153
MsG0180000836.01.T01 AT2G40630 34.451 328 140 12 199 501 203 480 3.23e-40 153
MsG0180000836.01.T01 AT2G40630 42.188 128 59 4 199 311 203 330 2.66e-20 93.2

Find 112 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTGATGCACAATCTTTA+AGG 0.109076 1:-11873176 None:intergenic
CATCCATACACGATTGAAAT+TGG 0.142251 1:-11871426 None:intergenic
GAACGAGTCCTCATGGATTT+TGG 0.192385 1:+11873107 MsG0180000836.01.T01:CDS
TTCCTTATGTCGAAGGAATT+TGG 0.203422 1:+11873872 MsG0180000836.01.T01:CDS
ATCAGGTAGTCCCAGGGTTT+TGG 0.270569 1:+11872366 MsG0180000836.01.T01:CDS
TCGCATCTTTCACATGTTCT+AGG 0.282682 1:-11873029 None:intergenic
CTCATTGGATCTCTCTCCTT+TGG 0.293606 1:-11872667 None:intergenic
ATTTCAACTTCAACTGTTCA+TGG 0.325280 1:+11872721 MsG0180000836.01.T01:CDS
GACATCAAAGGGCGTCTTGC+GGG 0.344234 1:+11873702 MsG0180000836.01.T01:CDS
CAAGAGATTCAATAATTGTT+TGG 0.346689 1:-11872921 None:intergenic
AACATTGTTCAATCGTCATT+TGG 0.348124 1:+11872259 MsG0180000836.01.T01:CDS
TACCACAAGGATCATAATTC+TGG 0.358167 1:-11873901 None:intergenic
ATCCATACACGATTGAAATT+GGG 0.362060 1:-11871425 None:intergenic
TATGGTACAGAAAAGGCAAT+TGG 0.362075 1:+11872229 MsG0180000836.01.T01:intron
CCGGATAAAAGCAGTGGATT+TGG 0.363540 1:+11872433 MsG0180000836.01.T01:CDS
CGGATACAATGAAGGATATC+TGG 0.365233 1:-11872413 None:intergenic
GACTGCGTTGTTTGATCATA+TGG 0.368849 1:+11873982 MsG0180000836.01.T01:CDS
AGAAGAAAGAGAAAAGGGTT+TGG 0.378076 1:-11871397 None:intergenic
AGAGAGATCCAATGAGAATA+TGG 0.378755 1:+11872674 MsG0180000836.01.T01:CDS
CTCCAAATTCCTTCGACATA+AGG 0.391145 1:-11873874 None:intergenic
TCCCCAATTTCAATCGTGTA+TGG 0.394336 1:+11871423 MsG0180000836.01.T01:exon
CAAGATGGAAGGAGCACATC+AGG 0.394422 1:+11872349 MsG0180000836.01.T01:CDS
GGAAAGAGAAGAAAGAGAAA+AGG 0.405697 1:-11871403 None:intergenic
GAAAGAGAAGAAAGAGAAAA+GGG 0.406997 1:-11871402 None:intergenic
CTCCCGCGTTTCTTCGGCAC+CGG 0.412535 1:-11872751 None:intergenic
CTGCTACTGTTGCTTCTCAA+TGG 0.416406 1:+11873661 MsG0180000836.01.T01:CDS
ATCTCCGTCCATATTCTCAT+TGG 0.418166 1:-11872682 None:intergenic
ATTGGATCTCTCTCCTTTGG+AGG 0.421393 1:-11872664 None:intergenic
CATGGCATAGATTGACCTAA+AGG 0.432673 1:-11874091 None:intergenic
AACGAACCTTTGAAGCAGAT+TGG 0.437603 1:-11871486 None:intergenic
CAGATATCCTTCATTGTATC+CGG 0.438823 1:+11872414 MsG0180000836.01.T01:CDS
CAAAGAGAGAACAAATCAAC+AGG 0.439385 1:+11872815 MsG0180000836.01.T01:CDS
AACTGTTCATGGTGGCATTC+CGG 0.439849 1:+11872732 MsG0180000836.01.T01:CDS
GGAATTGTTGTCGGAAAAGC+AGG 0.454962 1:+11872477 MsG0180000836.01.T01:CDS
TACTGTTGCTTCTCAATGGT+TGG 0.455636 1:+11873665 MsG0180000836.01.T01:CDS
TTACTAGTGGGAAGTCCCTC+AGG 0.457820 1:-11873932 None:intergenic
GATCTTAACACTGAAGTTTG+TGG 0.464864 1:+11872388 MsG0180000836.01.T01:CDS
TGTTCTTTGTGAAAACTTGT+TGG 0.467575 1:-11872592 None:intergenic
CTTACATGATTAATAATCCC+AGG 0.474734 1:-11872883 None:intergenic
GACCGTCCAATCTGCTTCAA+AGG 0.478163 1:+11871480 MsG0180000836.01.T01:CDS
ATGGTACAGAAAAGGCAATT+GGG 0.483116 1:+11872230 MsG0180000836.01.T01:intron
TCATGTAAGAAATAGAAAAC+AGG 0.494158 1:+11872897 MsG0180000836.01.T01:CDS
CTTTAGGTCAATCTATGCCA+TGG 0.497065 1:+11874092 MsG0180000836.01.T01:CDS
TTAGGTGATGAGTGAGAAGA+GGG 0.497120 1:+11871585 MsG0180000836.01.T01:intron
TTCTACATCAAGACATCAAA+GGG 0.503298 1:+11873691 MsG0180000836.01.T01:CDS
CATCGAATGAGTGGAAGTAT+AGG 0.503503 1:+11872991 MsG0180000836.01.T01:CDS
CTTGAATCTGTGGTTGCTGC+AGG 0.503538 1:+11871667 MsG0180000836.01.T01:CDS
CTACTGAATGATTTAAACCC+TGG 0.508197 1:+11872865 MsG0180000836.01.T01:CDS
TAAAATAGCAGAGTTGCATC+AGG 0.508788 1:+11873952 MsG0180000836.01.T01:CDS
CAGCTTTGCGTCGCAGTAGG+AGG 0.512130 1:+11873816 MsG0180000836.01.T01:intron
AAAATAGGAGCATAGGAAGT+AGG 0.512534 1:+11872959 MsG0180000836.01.T01:CDS
TCCATACACGATTGAAATTG+GGG 0.514783 1:-11871424 None:intergenic
TGGACGGAGATGAAGCGAAA+TGG 0.520042 1:+11872694 MsG0180000836.01.T01:CDS
TACTGAATGATTTAAACCCT+GGG 0.522493 1:+11872866 MsG0180000836.01.T01:CDS
CAGAGTTGCATCAGGCAAGA+TGG 0.523605 1:+11873960 MsG0180000836.01.T01:CDS
GGTGCCTTTGTCAGTGGACG+TGG 0.524014 1:+11872309 MsG0180000836.01.T01:CDS
GAAATTGTCATCTTCAATGA+AGG 0.527882 1:+11873233 MsG0180000836.01.T01:CDS
AAATCATTCAGTAGTCCACT+TGG 0.530652 1:-11872856 None:intergenic
TGACAAAGAACGAGTCCTCA+TGG 0.531969 1:+11873100 MsG0180000836.01.T01:CDS
GGAGCACATCAGGTAGTCCC+AGG 0.532878 1:+11872359 MsG0180000836.01.T01:CDS
TAAGGAGAAGGAATTGTTGT+CGG 0.533565 1:+11872468 MsG0180000836.01.T01:CDS
TGATACTAGATCCGTGAATG+TGG 0.555113 1:+11872567 MsG0180000836.01.T01:CDS
ACTTGTTGGTCCCACATTCA+CGG 0.556729 1:-11872578 None:intergenic
GTTGCCTTTCCTTATGTCGA+AGG 0.558470 1:+11873865 MsG0180000836.01.T01:CDS
AAACACGAAAATAGGAGCAT+AGG 0.561239 1:+11872952 MsG0180000836.01.T01:CDS
TTACAGCTTTGCGTCGCAGT+AGG 0.568245 1:+11873813 MsG0180000836.01.T01:intron
CACCAAGGTGCCTTTGTCAG+TGG 0.574240 1:+11872303 MsG0180000836.01.T01:CDS
CTTCTACATCAAGACATCAA+AGG 0.576241 1:+11873690 MsG0180000836.01.T01:CDS
TTACATGATTAATAATCCCA+GGG 0.576690 1:-11872882 None:intergenic
CAAAAGAAGAGCAAGATGGA+AGG 0.579626 1:+11872338 MsG0180000836.01.T01:CDS
AGACATCAAAGGGCGTCTTG+CGG 0.583767 1:+11873701 MsG0180000836.01.T01:CDS
GGATGAAGCACTTATTGAAG+AGG 0.586487 1:+11874003 MsG0180000836.01.T01:CDS
TGATGCTGAAACTATTTCCA+TGG 0.587090 1:-11874109 None:intergenic
TGAGAAACTCAGTAAGGAGA+AGG 0.588059 1:+11872456 MsG0180000836.01.T01:CDS
TTTAGGTGATGAGTGAGAAG+AGG 0.588914 1:+11871584 MsG0180000836.01.T01:intron
TTCATGCTTATCTCCCAAGT+GGG 0.592567 1:-11871614 None:intergenic
TTGTATCCGGATAAAAGCAG+TGG 0.593470 1:+11872427 MsG0180000836.01.T01:CDS
TTCCGGTGCCGAAGAAACGC+GGG 0.596896 1:+11872749 MsG0180000836.01.T01:CDS
GAAGAGGGTTAATACCCACT+TGG 0.597622 1:+11871600 MsG0180000836.01.T01:CDS
GTTTCAAAAGAAGAGCAAGA+TGG 0.600220 1:+11872334 MsG0180000836.01.T01:CDS
GTGTTAAGATCCAAAACCCT+GGG 0.601860 1:-11872376 None:intergenic
AACCTTTGAAGCAGATTGGA+CGG 0.604309 1:-11871482 None:intergenic
CAGGAAAGAGAACAACTTGG+TGG 0.607354 1:+11872496 MsG0180000836.01.T01:CDS
GAAGTATAGGCGTTAACAAG+AGG 0.608696 1:+11873004 MsG0180000836.01.T01:CDS
AATGAAAGATCTTGAATCTG+TGG 0.610845 1:+11871657 MsG0180000836.01.T01:CDS
ATTCCGGTGCCGAAGAAACG+CGG 0.611585 1:+11872748 MsG0180000836.01.T01:CDS
GTCCACTGACAAAGGCACCT+TGG 0.612422 1:-11872305 None:intergenic
AAGAGGGTTAATACCCACTT+GGG 0.613767 1:+11871601 MsG0180000836.01.T01:CDS
ACATCCACGTCCACTGACAA+AGG 0.613781 1:-11872313 None:intergenic
CAAGCAGCACATCGAATGAG+TGG 0.614102 1:+11872982 MsG0180000836.01.T01:CDS
ATTTGGTGAGAAACTCAGTA+AGG 0.617815 1:+11872450 MsG0180000836.01.T01:CDS
GAAAGAGAACAACTTGGTGG+TGG 0.618516 1:+11872499 MsG0180000836.01.T01:CDS
TTGTGGTATGAAATTTCCTG+AGG 0.620717 1:+11873916 MsG0180000836.01.T01:CDS
ACAAAGATTGCAGCTCCAAG+TGG 0.624079 1:+11872841 MsG0180000836.01.T01:CDS
GAGCAGTGCTGAACCTCCAA+AGG 0.625656 1:+11872651 MsG0180000836.01.T01:CDS
AAGTATAGGCGTTAACAAGA+GGG 0.629743 1:+11873005 MsG0180000836.01.T01:CDS
AGTGTTAAGATCCAAAACCC+TGG 0.632315 1:-11872377 None:intergenic
AATTCCTTCGACATAAGGAA+AGG 0.634583 1:-11873869 None:intergenic
TGTGGTATGAAATTTCCTGA+GGG 0.635397 1:+11873917 MsG0180000836.01.T01:CDS
GATACTAGATCCGTGAATGT+GGG 0.637534 1:+11872568 MsG0180000836.01.T01:CDS
AGATCCAATGAGAATATGGA+CGG 0.638354 1:+11872678 MsG0180000836.01.T01:CDS
GACCAGAATTATGATCCTTG+TGG 0.652264 1:+11873899 MsG0180000836.01.T01:CDS
TCAACTTCAACTGTTCATGG+TGG 0.666173 1:+11872724 MsG0180000836.01.T01:CDS
AAGCAGGAAAGAGAACAACT+TGG 0.671542 1:+11872493 MsG0180000836.01.T01:CDS
GTTCATGCTTATCTCCCAAG+TGG 0.674448 1:-11871615 None:intergenic
GAGCACATCAGGTAGTCCCA+GGG 0.680059 1:+11872360 MsG0180000836.01.T01:CDS
TCAGGAAATTTCATACCACA+AGG 0.683637 1:-11873914 None:intergenic
CGGTGCCGAAGAAACGCGGG+AGG 0.695908 1:+11872752 MsG0180000836.01.T01:CDS
GAACACGAGAGGAATTAATG+TGG 0.701018 1:+11872528 MsG0180000836.01.T01:CDS
TGAGATGTCACAAATCACCA+AGG 0.717810 1:+11872288 MsG0180000836.01.T01:CDS
GGTGGTGATGTGAACACGAG+AGG 0.718627 1:+11872517 MsG0180000836.01.T01:CDS
TTTACCCTCCAAAATCCATG+AGG 0.742859 1:-11873115 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCAAATATATATAAGA+AGG + Chr1:11873535-11873554 MsG0180000836.01.T01:intron 10.0%
!! AAATCAAATATATATAAGAA+GGG + Chr1:11873536-11873555 MsG0180000836.01.T01:intron 10.0%
!!! AACTTTAAAAGAAATAAATA+TGG - Chr1:11873733-11873752 None:intergenic 10.0%
!!! TTTCTTTTAAAGTTTTTAAA+CGG + Chr1:11873739-11873758 MsG0180000836.01.T01:intron 10.0%
!! AATAATGCATAATAAAAACA+AGG + Chr1:11873385-11873404 MsG0180000836.01.T01:intron 15.0%
!! ACTTTATGAATATTCATAAA+AGG - Chr1:11872079-11872098 None:intergenic 15.0%
!! ATAATGCATAATAAAAACAA+GGG + Chr1:11873386-11873405 MsG0180000836.01.T01:intron 15.0%
!! TGTAAATGATATTTCATATT+TGG + Chr1:11871809-11871828 MsG0180000836.01.T01:intron 15.0%
!!! TTCTTTTAAAGTTTTTAAAC+GGG + Chr1:11873740-11873759 MsG0180000836.01.T01:intron 15.0%
!! AATAAAATTTGATAGAGTCA+AGG + Chr1:11872052-11872071 MsG0180000836.01.T01:intron 20.0%
!! ATAGTAAGTAGATAAACTTA+AGG - Chr1:11871993-11872012 None:intergenic 20.0%
!! ATAGTAAGTTGTTGAATATT+AGG - Chr1:11871966-11871985 None:intergenic 20.0%
!! TATGAATATTCATAAAGTCA+GGG + Chr1:11872081-11872100 MsG0180000836.01.T01:intron 20.0%
!! TTATGAATATTCATAAAGTC+AGG + Chr1:11872080-11872099 MsG0180000836.01.T01:intron 20.0%
!!! AAAACACAAATATTTTGTCA+TGG + Chr1:11874046-11874065 MsG0180000836.01.T01:CDS 20.0%
!!! ATTTTTTTTCTTTCTGGTTT+AGG + Chr1:11871567-11871586 MsG0180000836.01.T01:intron 20.0%
!!! GTTTTGATTTTTTTTCTTTC+TGG + Chr1:11871561-11871580 MsG0180000836.01.T01:intron 20.0%
! AAACATAAGCAAAAGGAAAA+TGG - Chr1:11873342-11873361 None:intergenic 25.0%
! AGAATCATCAAATGTTACAA+CGG + Chr1:11873287-11873306 MsG0180000836.01.T01:intron 25.0%
! AGATTATGAGTATTTCAGAA+AGG + Chr1:11871910-11871929 MsG0180000836.01.T01:intron 25.0%
! AGGTAATTTCATTATTGGAT+TGG + Chr1:11871687-11871706 MsG0180000836.01.T01:intron 25.0%
! ATAATGAAAATGCTTACATG+TGG + Chr1:11873769-11873788 MsG0180000836.01.T01:intron 25.0%
! CAAGAGATTCAATAATTGTT+TGG - Chr1:11872924-11872943 None:intergenic 25.0%
! GGAAAATTAATCTTCACATT+AGG + Chr1:11873447-11873466 MsG0180000836.01.T01:intron 25.0%
! GGTAATTTCATTATTGGATT+GGG + Chr1:11871688-11871707 MsG0180000836.01.T01:intron 25.0%
! GGTTTAAATTTACATGCATA+TGG + Chr1:11871709-11871728 MsG0180000836.01.T01:intron 25.0%
! TAACTGAAAAACACGAAAAT+AGG + Chr1:11872944-11872963 MsG0180000836.01.T01:CDS 25.0%
! TACAAAGTTAGAGACTAATT+TGG + Chr1:11872122-11872141 MsG0180000836.01.T01:intron 25.0%
! TAGTATAGATGTCATCTAAT+GGG + Chr1:11873471-11873490 MsG0180000836.01.T01:intron 25.0%
! TCATGTAAGAAATAGAAAAC+AGG + Chr1:11872897-11872916 MsG0180000836.01.T01:CDS 25.0%
! TGAAATTCTTGAGCAAAAAA+TGG + Chr1:11872786-11872805 MsG0180000836.01.T01:CDS 25.0%
! TTACATGATTAATAATCCCA+GGG - Chr1:11872885-11872904 None:intergenic 25.0%
! TTGTATTTATGGTACAGAAA+AGG + Chr1:11872222-11872241 MsG0180000836.01.T01:intron 25.0%
! TTTGTTGAACATCCTTAAAT+AGG + Chr1:11871881-11871900 MsG0180000836.01.T01:intron 25.0%
!! ATGATACGCTTTTGTATTTA+TGG + Chr1:11872211-11872230 MsG0180000836.01.T01:intron 25.0%
!! CTATATTGTTGTATGCATTT+TGG + Chr1:11872154-11872173 MsG0180000836.01.T01:intron 25.0%
AAAGTTAGAGACTAATTTGG+TGG + Chr1:11872125-11872144 MsG0180000836.01.T01:intron 30.0%
AACATTGTTCAATCGTCATT+TGG + Chr1:11872259-11872278 MsG0180000836.01.T01:CDS 30.0%
AATGAAAGATCTTGAATCTG+TGG + Chr1:11871657-11871676 MsG0180000836.01.T01:CDS 30.0%
ACTCTCTTAAACTGACAAAT+TGG + Chr1:11871939-11871958 MsG0180000836.01.T01:intron 30.0%
AGACAAGAAACATAAGCAAA+AGG - Chr1:11873349-11873368 None:intergenic 30.0%
ATCCATACACGATTGAAATT+GGG - Chr1:11871428-11871447 None:intergenic 30.0%
ATTTCAACTTCAACTGTTCA+TGG + Chr1:11872721-11872740 MsG0180000836.01.T01:CDS 30.0%
CATTTGATGCACAATCTTTA+AGG - Chr1:11873179-11873198 None:intergenic 30.0%
CTAGTATAGATGTCATCTAA+TGG + Chr1:11873470-11873489 MsG0180000836.01.T01:intron 30.0%
CTGAAATACTCATAATCTCA+AGG - Chr1:11871908-11871927 None:intergenic 30.0%
CTTACATGATTAATAATCCC+AGG - Chr1:11872886-11872905 None:intergenic 30.0%
GAAAGAGAAGAAAGAGAAAA+GGG - Chr1:11871405-11871424 None:intergenic 30.0%
GAAATTGTCATCTTCAATGA+AGG + Chr1:11873233-11873252 MsG0180000836.01.T01:CDS 30.0%
GCATAATAAAAACAAGGGAT+TGG + Chr1:11873391-11873410 MsG0180000836.01.T01:intron 30.0%
GCTTGTTCATGATAAAAAGT+AGG - Chr1:11873066-11873085 None:intergenic 30.0%
GTACCATAAAAAGTTGTCTA+GGG + Chr1:11873493-11873512 MsG0180000836.01.T01:intron 30.0%
GTCCATCAAAGAATACAATA+AGG - Chr1:11872025-11872044 None:intergenic 30.0%
GTCCTTATTGTATTCTTTGA+TGG + Chr1:11872020-11872039 MsG0180000836.01.T01:intron 30.0%
GTTTCATCTCTTTCTCTAAA+AGG + Chr1:11873309-11873328 MsG0180000836.01.T01:intron 30.0%
TAATCTCAAGGACCTATTTA+AGG - Chr1:11871896-11871915 None:intergenic 30.0%
TACTGAATGATTTAAACCCT+GGG + Chr1:11872866-11872885 MsG0180000836.01.T01:CDS 30.0%
TGATTCTTCATTCGACATAT+TGG - Chr1:11873274-11873293 None:intergenic 30.0%
TGTTCTTTGTGAAAACTTGT+TGG - Chr1:11872595-11872614 None:intergenic 30.0%
TTCTACATCAAGACATCAAA+GGG + Chr1:11873691-11873710 MsG0180000836.01.T01:CDS 30.0%
! ACAAGTTTTCACAAAGAACA+TGG + Chr1:11872595-11872614 MsG0180000836.01.T01:CDS 30.0%
! ATACCCTAGACAACTTTTTA+TGG - Chr1:11873499-11873518 None:intergenic 30.0%
! TGATTTTACAAGCTGAAACA+TGG - Chr1:11873522-11873541 None:intergenic 30.0%
!! AATATTTTGTCATGGTCTTG+AGG + Chr1:11874054-11874073 MsG0180000836.01.T01:CDS 30.0%
!! ACATGGTCATTTTAAGTCAA+AGG + Chr1:11872612-11872631 MsG0180000836.01.T01:CDS 30.0%
!! AGAAGTATTCGTATCAGTAA+AGG - Chr1:11873632-11873651 None:intergenic 30.0%
!! ATTTTGACACGTTTTCTAAG+GGG - Chr1:11871640-11871659 None:intergenic 30.0%
!! CATTTTGACACGTTTTCTAA+GGG - Chr1:11871641-11871660 None:intergenic 30.0%
!! TCATTTTGACACGTTTTCTA+AGG - Chr1:11871642-11871661 None:intergenic 30.0%
!!! AACTCTGCTATTTTACTAGT+GGG - Chr1:11873947-11873966 None:intergenic 30.0%
!!! AGGGTTTGGATTTTGAAATT+AGG - Chr1:11871386-11871405 None:intergenic 30.0%
!!! GCTTATTTTAGGTTTCCTTT+AGG + Chr1:11874076-11874095 MsG0180000836.01.T01:CDS 30.0%
!!! GGGTTTGGATTTTGAAATTA+GGG - Chr1:11871385-11871404 None:intergenic 30.0%
AAATCATTCAGTAGTCCACT+TGG - Chr1:11872859-11872878 None:intergenic 35.0%
AAGTATAGGCGTTAACAAGA+GGG + Chr1:11873005-11873024 MsG0180000836.01.T01:CDS 35.0%
AATTCCTTCGACATAAGGAA+AGG - Chr1:11873872-11873891 None:intergenic 35.0%
AGAAGAAAGAGAAAAGGGTT+TGG - Chr1:11871400-11871419 None:intergenic 35.0%
AGAGAGATCCAATGAGAATA+TGG + Chr1:11872674-11872693 MsG0180000836.01.T01:CDS 35.0%
AGATCCAATGAGAATATGGA+CGG + Chr1:11872678-11872697 MsG0180000836.01.T01:CDS 35.0%
ATGGTACAGAAAAGGCAATT+GGG + Chr1:11872230-11872249 MsG0180000836.01.T01:intron 35.0%
CAAAGAGAGAACAAATCAAC+AGG + Chr1:11872815-11872834 MsG0180000836.01.T01:CDS 35.0%
CAGATATCCTTCATTGTATC+CGG + Chr1:11872414-11872433 MsG0180000836.01.T01:CDS 35.0%
CATCCATACACGATTGAAAT+TGG - Chr1:11871429-11871448 None:intergenic 35.0%
CTACTGAATGATTTAAACCC+TGG + Chr1:11872865-11872884 MsG0180000836.01.T01:CDS 35.0%
CTTCTACATCAAGACATCAA+AGG + Chr1:11873690-11873709 MsG0180000836.01.T01:CDS 35.0%
GATCTTAACACTGAAGTTTG+TGG + Chr1:11872388-11872407 MsG0180000836.01.T01:CDS 35.0%
GCATACAATGTAGAAAAAGC+TGG + Chr1:11873153-11873172 MsG0180000836.01.T01:CDS 35.0%
GCTGCAGGTAATTTCATTAT+TGG + Chr1:11871682-11871701 MsG0180000836.01.T01:intron 35.0%
GGAAAGAGAAGAAAGAGAAA+AGG - Chr1:11871406-11871425 None:intergenic 35.0%
GGTACCATAAAAAGTTGTCT+AGG + Chr1:11873492-11873511 MsG0180000836.01.T01:intron 35.0%
GTTTCAAAAGAAGAGCAAGA+TGG + Chr1:11872334-11872353 MsG0180000836.01.T01:CDS 35.0%
TAAAATAGCAGAGTTGCATC+AGG + Chr1:11873952-11873971 MsG0180000836.01.T01:CDS 35.0%
TAAGGAGAAGGAATTGTTGT+CGG + Chr1:11872468-11872487 MsG0180000836.01.T01:CDS 35.0%
TACCACAAGGATCATAATTC+TGG - Chr1:11873904-11873923 None:intergenic 35.0%
TATGGTACAGAAAAGGCAAT+TGG + Chr1:11872229-11872248 MsG0180000836.01.T01:intron 35.0%
TCAGGAAATTTCATACCACA+AGG - Chr1:11873917-11873936 None:intergenic 35.0%
TCCATACACGATTGAAATTG+GGG - Chr1:11871427-11871446 None:intergenic 35.0%
TGTGGTATGAAATTTCCTGA+GGG + Chr1:11873917-11873936 MsG0180000836.01.T01:CDS 35.0%
TTCCTTATGTCGAAGGAATT+TGG + Chr1:11873872-11873891 MsG0180000836.01.T01:CDS 35.0%
TTCTTCATTCGACATATTGG+TGG - Chr1:11873271-11873290 None:intergenic 35.0%
TTGTGGTATGAAATTTCCTG+AGG + Chr1:11873916-11873935 MsG0180000836.01.T01:CDS 35.0%
TTTGTCAGTTTAAGAGAGTC+AGG - Chr1:11871938-11871957 None:intergenic 35.0%
! AAAATAGGAGCATAGGAAGT+AGG + Chr1:11872959-11872978 MsG0180000836.01.T01:CDS 35.0%
! AAACACGAAAATAGGAGCAT+AGG + Chr1:11872952-11872971 MsG0180000836.01.T01:CDS 35.0%
! ATTTGGTGAGAAACTCAGTA+AGG + Chr1:11872450-11872469 MsG0180000836.01.T01:CDS 35.0%
! CTTTTATCCGGATACAATGA+AGG - Chr1:11872424-11872443 None:intergenic 35.0%
!! ATGGTCTTGAGGCTTATTTT+AGG + Chr1:11874065-11874084 MsG0180000836.01.T01:CDS 35.0%
!!! CAACTCTGCTATTTTACTAG+TGG - Chr1:11873948-11873967 None:intergenic 35.0%
AAGAGGGTTAATACCCACTT+GGG + Chr1:11871601-11871620 MsG0180000836.01.T01:CDS 40.0%
AAGCAGGAAAGAGAACAACT+TGG + Chr1:11872493-11872512 MsG0180000836.01.T01:CDS 40.0%
AGTGTTAAGATCCAAAACCC+TGG - Chr1:11872380-11872399 None:intergenic 40.0%
ATCTCCGTCCATATTCTCAT+TGG - Chr1:11872685-11872704 None:intergenic 40.0%
CAAAAGAAGAGCAAGATGGA+AGG + Chr1:11872338-11872357 MsG0180000836.01.T01:CDS 40.0%
CATGGCATAGATTGACCTAA+AGG - Chr1:11874094-11874113 None:intergenic 40.0%
CGGATACAATGAAGGATATC+TGG - Chr1:11872416-11872435 None:intergenic 40.0%
CTCCAAATTCCTTCGACATA+AGG - Chr1:11873877-11873896 None:intergenic 40.0%
CTTTAGGTCAATCTATGCCA+TGG + Chr1:11874092-11874111 MsG0180000836.01.T01:CDS 40.0%
GAACACGAGAGGAATTAATG+TGG + Chr1:11872528-11872547 MsG0180000836.01.T01:CDS 40.0%
GAAGTATAGGCGTTAACAAG+AGG + Chr1:11873004-11873023 MsG0180000836.01.T01:CDS 40.0%
GACCAGAATTATGATCCTTG+TGG + Chr1:11873899-11873918 MsG0180000836.01.T01:CDS 40.0%
GACTGCGTTGTTTGATCATA+TGG + Chr1:11873982-11874001 MsG0180000836.01.T01:CDS 40.0%
GATACTAGATCCGTGAATGT+GGG + Chr1:11872568-11872587 MsG0180000836.01.T01:CDS 40.0%
GCTGCATTAGTTCATCACAA+CGG - Chr1:11873427-11873446 None:intergenic 40.0%
GTGTTAAGATCCAAAACCCT+GGG - Chr1:11872379-11872398 None:intergenic 40.0%
GTTGTGATGAACTAATGCAG+CGG + Chr1:11873426-11873445 MsG0180000836.01.T01:intron 40.0%
TCAACTTCAACTGTTCATGG+TGG + Chr1:11872724-11872743 MsG0180000836.01.T01:CDS 40.0%
TCCCCAATTTCAATCGTGTA+TGG + Chr1:11871423-11871442 MsG0180000836.01.T01:exon 40.0%
TCGCATCTTTCACATGTTCT+AGG - Chr1:11873032-11873051 None:intergenic 40.0%
TGAGAAACTCAGTAAGGAGA+AGG + Chr1:11872456-11872475 MsG0180000836.01.T01:CDS 40.0%
TGAGATGTCACAAATCACCA+AGG + Chr1:11872288-11872307 MsG0180000836.01.T01:CDS 40.0%
TGATACTAGATCCGTGAATG+TGG + Chr1:11872567-11872586 MsG0180000836.01.T01:CDS 40.0%
TTAGGTGATGAGTGAGAAGA+GGG + Chr1:11871585-11871604 MsG0180000836.01.T01:intron 40.0%
TTCATGCTTATCTCCCAAGT+GGG - Chr1:11871617-11871636 None:intergenic 40.0%
TTGTATCCGGATAAAAGCAG+TGG + Chr1:11872427-11872446 MsG0180000836.01.T01:CDS 40.0%
TTTACCCTCCAAAATCCATG+AGG - Chr1:11873118-11873137 None:intergenic 40.0%
TTTAGGTGATGAGTGAGAAG+AGG + Chr1:11871584-11871603 MsG0180000836.01.T01:intron 40.0%
! CATCGAATGAGTGGAAGTAT+AGG + Chr1:11872991-11873010 MsG0180000836.01.T01:CDS 40.0%
! GGATGAAGCACTTATTGAAG+AGG + Chr1:11874003-11874022 MsG0180000836.01.T01:CDS 40.0%
! TACTGTTGCTTCTCAATGGT+TGG + Chr1:11873665-11873684 MsG0180000836.01.T01:CDS 40.0%
!! AACCTTTGAAGCAGATTGGA+CGG - Chr1:11871485-11871504 None:intergenic 40.0%
!! AACGAACCTTTGAAGCAGAT+TGG - Chr1:11871489-11871508 None:intergenic 40.0%
!! CCAAATCCACTGCTTTTATC+CGG - Chr1:11872436-11872455 None:intergenic 40.0%
!! TCATGGATTTTGGAGGGTAA+AGG + Chr1:11873117-11873136 MsG0180000836.01.T01:CDS 40.0%
AACTGTTCATGGTGGCATTC+CGG + Chr1:11872732-11872751 MsG0180000836.01.T01:CDS 45.0%
ACAAAGATTGCAGCTCCAAG+TGG + Chr1:11872841-11872860 MsG0180000836.01.T01:CDS 45.0%
ATTGGATCTCTCTCCTTTGG+AGG - Chr1:11872667-11872686 None:intergenic 45.0%
CAGGAAAGAGAACAACTTGG+TGG + Chr1:11872496-11872515 MsG0180000836.01.T01:CDS 45.0%
CTCATTGGATCTCTCTCCTT+TGG - Chr1:11872670-11872689 None:intergenic 45.0%
GAAGAGGGTTAATACCCACT+TGG + Chr1:11871600-11871619 MsG0180000836.01.T01:CDS 45.0%
GCTTATTGAGCCTTTGCTGA+TGG + Chr1:11873594-11873613 MsG0180000836.01.T01:intron 45.0%
GGAATTGTTGTCGGAAAAGC+AGG + Chr1:11872477-11872496 MsG0180000836.01.T01:CDS 45.0%
GTTCATGCTTATCTCCCAAG+TGG - Chr1:11871618-11871637 None:intergenic 45.0%
GTTGCCTTTCCTTATGTCGA+AGG + Chr1:11873865-11873884 MsG0180000836.01.T01:CDS 45.0%
TGACAAAGAACGAGTCCTCA+TGG + Chr1:11873100-11873119 MsG0180000836.01.T01:CDS 45.0%
! ACTTGTTGGTCCCACATTCA+CGG - Chr1:11872581-11872600 None:intergenic 45.0%
! CCGGATAAAAGCAGTGGATT+TGG + Chr1:11872433-11872452 MsG0180000836.01.T01:CDS 45.0%
! CTGCTACTGTTGCTTCTCAA+TGG + Chr1:11873661-11873680 MsG0180000836.01.T01:CDS 45.0%
! GAAAGAGAACAACTTGGTGG+TGG + Chr1:11872499-11872518 MsG0180000836.01.T01:CDS 45.0%
! GAACGAGTCCTCATGGATTT+TGG + Chr1:11873107-11873126 MsG0180000836.01.T01:CDS 45.0%
! GAGTCCTCATGGATTTTGGA+GGG + Chr1:11873111-11873130 MsG0180000836.01.T01:CDS 45.0%
!! CAAGAAGCATCCATCAGCAA+AGG - Chr1:11873607-11873626 None:intergenic 45.0%
ACATCCACGTCCACTGACAA+AGG - Chr1:11872316-11872335 None:intergenic 50.0%
CAAGCAGCACATCGAATGAG+TGG + Chr1:11872982-11873001 MsG0180000836.01.T01:CDS 50.0%
CAGAGTTGCATCAGGCAAGA+TGG + Chr1:11873960-11873979 MsG0180000836.01.T01:CDS 50.0%
CTTGAATCTGTGGTTGCTGC+AGG + Chr1:11871667-11871686 MsG0180000836.01.T01:CDS 50.0%
GACCGTCCAATCTGCTTCAA+AGG + Chr1:11871480-11871499 MsG0180000836.01.T01:CDS 50.0%
TGGACGGAGATGAAGCGAAA+TGG + Chr1:11872694-11872713 MsG0180000836.01.T01:CDS 50.0%
TTACAGCTTTGCGTCGCAGT+AGG + Chr1:11873813-11873832 MsG0180000836.01.T01:intron 50.0%
TTACTAGTGGGAAGTCCCTC+AGG - Chr1:11873935-11873954 None:intergenic 50.0%
! ATCAGGTAGTCCCAGGGTTT+TGG + Chr1:11872366-11872385 MsG0180000836.01.T01:CDS 50.0%
! CAAGATGGAAGGAGCACATC+AGG + Chr1:11872349-11872368 MsG0180000836.01.T01:CDS 50.0%
! CGAGTCCTCATGGATTTTGG+AGG + Chr1:11873110-11873129 MsG0180000836.01.T01:CDS 50.0%
! CTTTTCCTCCCGCGTTTCTT+CGG - Chr1:11872760-11872779 None:intergenic 50.0%
!! AGACATCAAAGGGCGTCTTG+CGG + Chr1:11873701-11873720 MsG0180000836.01.T01:CDS 50.0%
GAGCACATCAGGTAGTCCCA+GGG + Chr1:11872360-11872379 MsG0180000836.01.T01:CDS 55.0%
! ATTCCGGTGCCGAAGAAACG+CGG + Chr1:11872748-11872767 MsG0180000836.01.T01:CDS 55.0%
! CACCAAGGTGCCTTTGTCAG+TGG + Chr1:11872303-11872322 MsG0180000836.01.T01:CDS 55.0%
! GAGCAGTGCTGAACCTCCAA+AGG + Chr1:11872651-11872670 MsG0180000836.01.T01:CDS 55.0%
! GGTGGTGATGTGAACACGAG+AGG + Chr1:11872517-11872536 MsG0180000836.01.T01:CDS 55.0%
!! GACATCAAAGGGCGTCTTGC+GGG + Chr1:11873702-11873721 MsG0180000836.01.T01:CDS 55.0%
!! GTCCACTGACAAAGGCACCT+TGG - Chr1:11872308-11872327 None:intergenic 55.0%
CAGCTTTGCGTCGCAGTAGG+AGG + Chr1:11873816-11873835 MsG0180000836.01.T01:intron 60.0%
GGAGCACATCAGGTAGTCCC+AGG + Chr1:11872359-11872378 MsG0180000836.01.T01:CDS 60.0%
GGTGCCTTTGTCAGTGGACG+TGG + Chr1:11872309-11872328 MsG0180000836.01.T01:CDS 60.0%
! TTCCGGTGCCGAAGAAACGC+GGG + Chr1:11872749-11872768 MsG0180000836.01.T01:CDS 60.0%
CTCCCGCGTTTCTTCGGCAC+CGG - Chr1:11872754-11872773 None:intergenic 65.0%
! CGGTGCCGAAGAAACGCGGG+AGG + Chr1:11872752-11872771 MsG0180000836.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 11871371 11874120 11871371 ID=MsG0180000836.01;Name=MsG0180000836.01
Chr1 mRNA 11871371 11874120 11871371 ID=MsG0180000836.01.T01;Parent=MsG0180000836.01;Name=MsG0180000836.01.T01;_AED=0.39;_eAED=0.39;_QI=71|0.75|0.6|1|1|1|5|0|516
Chr1 exon 11873819 11874120 11873819 ID=MsG0180000836.01.T01:exon:538;Parent=MsG0180000836.01.T01
Chr1 exon 11873661 11873723 11873661 ID=MsG0180000836.01.T01:exon:537;Parent=MsG0180000836.01.T01
Chr1 exon 11872239 11873264 11872239 ID=MsG0180000836.01.T01:exon:536;Parent=MsG0180000836.01.T01
Chr1 exon 11871589 11871688 11871589 ID=MsG0180000836.01.T01:exon:535;Parent=MsG0180000836.01.T01
Chr1 exon 11871371 11871501 11871371 ID=MsG0180000836.01.T01:exon:534;Parent=MsG0180000836.01.T01
Chr1 five_prime_UTR 11871371 11871441 11871371 ID=MsG0180000836.01.T01:five_prime_utr;Parent=MsG0180000836.01.T01
Chr1 CDS 11871442 11871501 11871442 ID=MsG0180000836.01.T01:cds;Parent=MsG0180000836.01.T01
Chr1 CDS 11871589 11871688 11871589 ID=MsG0180000836.01.T01:cds;Parent=MsG0180000836.01.T01
Chr1 CDS 11872239 11873264 11872239 ID=MsG0180000836.01.T01:cds;Parent=MsG0180000836.01.T01
Chr1 CDS 11873661 11873723 11873661 ID=MsG0180000836.01.T01:cds;Parent=MsG0180000836.01.T01
Chr1 CDS 11873819 11874120 11873819 ID=MsG0180000836.01.T01:cds;Parent=MsG0180000836.01.T01
Gene Sequence

>MsG0180000836.01.T01

ATGGATGAAGAATGCAACTCATCGCAGCAATCGATTTTGACCGTCCAATCTGCTTCAAAGGTGATGAGTGAGAAGAGGGTTAATACCCACTTGGGAGATAAGCATGAACCCCTTAGAAAACGTGTCAAAATGAAAGATCTTGAATCTGTGGTTGCTGCAGAAAAGGCAATTGGGAAAGAAAACATTGTTCAATCGTCATTTGGTGATAATGAGATGTCACAAATCACCAAGGTGCCTTTGTCAGTGGACGTGGATGTTTCAAAAGAAGAGCAAGATGGAAGGAGCACATCAGGTAGTCCCAGGGTTTTGGATCTTAACACTGAAGTTTGTGGTACCAGATATCCTTCATTGTATCCGGATAAAAGCAGTGGATTTGGTGAGAAACTCAGTAAGGAGAAGGAATTGTTGTCGGAAAAGCAGGAAAGAGAACAACTTGGTGGTGGTGATGTGAACACGAGAGGAATTAATGTGGATCTCAACGCAGAAGATGATACTAGATCCGTGAATGTGGGACCAACAAGTTTTCACAAAGAACATGGTCATTTTAAGTCAAAGGATTTGTCTGAGAGTGCGAGCAGTGCTGAACCTCCAAAGGAGAGAGATCCAATGAGAATATGGACGGAGATGAAGCGAAATGGTTTTATTTCAACTTCAACTGTTCATGGTGGCATTCCGGTGCCGAAGAAACGCGGGAGGAAAAGTAAGAGTGAAATTCTTGAGCAAAAAATGGAGCTTGCAAAGAGAGAACAAATCAACAGGTTTACAAAGATTGCAGCTCCAAGTGGACTACTGAATGATTTAAACCCTGGGATTATTAATCATGTAAGAAATAGAAAACAGGTCCAAACAATTATTGAATCTCTTGTAACTGAAAAACACGAAAATAGGAGCATAGGAAGTAGGCAAGCAGCACATCGAATGAGTGGAAGTATAGGCGTTAACAAGAGGGACCTAGAACATGTGAAAGATGCGAGTAAGCATCAGCCTACTTTTTATCATGAACAAGCACGAAAGAGTCATGTGACAAAGAACGAGTCCTCATGGATTTTGGAGGGTAAAGGTTATGATTGTGACGCATACAATGTAGAAAAAGCTGGCCTTAAAGATTGTGCATCAAATGCAAGTCATGTCACAGAAGATGACATTTTATCGCTGAAATTGTCATCTTCAATGAAGGCATCAGTCACTGCTACTGTTGCTTCTCAATGGTTGGAGCTTCTACATCAAGACATCAAAGGGCGTCTTGCGGCTTTGCGTCGCAGTAGGAGGAGAGTTCGATCTGTAATCACTACTGAGTTGCCTTTCCTTATGTCGAAGGAATTTGGAGATGACCAGAATTATGATCCTTGTGGTATGAAATTTCCTGAGGGACTTCCCACTAGTAAAATAGCAGAGTTGCATCAGGCAAGATGGACTGCGTTGTTTGATCATATGGATGAAGCACTTATTGAAGAGGAAAAGCAACTTGTGAGTTCTAAAACACAAATATTTTGTCATGGTCTTGAGGCTTATTTTAGGTTTCCTTTAGGTCAATCTATGCCATGGAAATAG

Protein sequence

>MsG0180000836.01.T01

MDEECNSSQQSILTVQSASKVMSEKRVNTHLGDKHEPLRKRVKMKDLESVVAAEKAIGKENIVQSSFGDNEMSQITKVPLSVDVDVSKEEQDGRSTSGSPRVLDLNTEVCGTRYPSLYPDKSSGFGEKLSKEKELLSEKQEREQLGGGDVNTRGINVDLNAEDDTRSVNVGPTSFHKEHGHFKSKDLSESASSAEPPKERDPMRIWTEMKRNGFISTSTVHGGIPVPKKRGRKSKSEILEQKMELAKREQINRFTKIAAPSGLLNDLNPGIINHVRNRKQVQTIIESLVTEKHENRSIGSRQAAHRMSGSIGVNKRDLEHVKDASKHQPTFYHEQARKSHVTKNESSWILEGKGYDCDAYNVEKAGLKDCASNASHVTEDDILSLKLSSSMKASVTATVASQWLELLHQDIKGRLAALRRSRRRVRSVITTELPFLMSKEFGDDQNYDPCGMKFPEGLPTSKIAELHQARWTALFDHMDEALIEEEKQLVSSKTQIFCHGLEAYFRFPLGQSMPWK*