AlfalfaGEDB | MsG0580026786.01

M. sativa cultivar ZhongmuNo.1 / MsG0580026786.01

KEGG: K15028
GO: GO:0003743 GO:0005488 GO:0005852 GO:0006446 GO:0043022
PFAM: PF10075

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026786.01.T01	XP_003609944.1	94.22	173	5	1	20	192	1	168	2.85E-113	333

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026786.01.T01	Q94HF1	79.487	156	32	0	37	192	5	160	4.19E-90	266

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026786.01.T01	G7JS43	94.220	173	5	1	20	192	1	168	1.36e-113	333

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280006465.01	MsG0580026786.01	-0.846261	2.427027e-59	4.153349e-56
MsG0280008932.01	MsG0580026786.01	-0.828267	9.887256e-55	9.777967e-52
MsG0380016812.01	MsG0580026786.01	0.818477	1.920659e-52	1.439286e-49
MsG0480021739.01	MsG0580026786.01	-0.800429	1.447321e-48	6.737770e-46
MsG0580026786.01	MsG0680031377.01	0.809894	1.510093e-50	8.973492e-48
MsG0580026786.01	MsG0680032814.01	-0.833142	6.319748e-56	7.214299e-53
MsG0580026786.01	MsG0880047519.01	-0.814134	1.797941e-51	1.196512e-48

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PPI

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Gene1	Gene2	Type
MsG0580026786.01	MsG0780040280.01	PPI
MsG0580026786.01	MsG0780036859.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026786.01.T01	MTR_4g124640	94.220	173	5	1	20	192	1	168	3.46e-117	333

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026786.01.T01	AT4G33250	79.874	159	30	1	34	192	6	162	6.84e-91	266

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Find 38 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGACACAGGCTGAAGTC+TGG	0.427245	5:+44805370	None:intergenic
ACAAGTACAACAGCAAGGAC+AGG	0.520513	5:-44805614	MsG0580026786.01.T01:CDS
ACCTCAGCAAGCACAGTTCT+AGG	0.298434	5:+44805148	None:intergenic
AGCCGTGCCAGGATTTGAGC+AGG	0.543997	5:-44805221	MsG0580026786.01.T01:CDS
CAAACTGGTAGAGGCGAAGA+AGG	0.520837	5:+44805461	None:intergenic
CAAGTACAACAGCAAGGACA+GGG	0.623697	5:-44805613	MsG0580026786.01.T01:CDS
CACAGGCTGAAGTCTGGAGC+TGG	0.532716	5:+44805376	None:intergenic
CACATTGAAAATTAGGAATA+TGG	0.260139	5:+44805689	None:intergenic
CATATAGTTGAAGCCGTGCC+AGG	0.433378	5:-44805232	MsG0580026786.01.T01:CDS
CATATTGGTTAAGGCCCTCA+TGG	0.529992	5:-44805404	MsG0580026786.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAGATCTTGAAGAATATC+AGG	+	Chr5:44805279-44805298	None:intergenic	30.0%
CTCACTATTTAGAGACTGGA+AGG	-	Chr5:44805526-44805545	MsG0580026786.01.T01:CDS	40.0%
CTGTCTCACTATTTAGAGAC+TGG	-	Chr5:44805522-44805541	MsG0580026786.01.T01:CDS	40.0%
ACAAGTACAACAGCAAGGAC+AGG	-	Chr5:44805203-44805222	MsG0580026786.01.T01:CDS	45.0%
CAAGTACAACAGCAAGGACA+GGG	-	Chr5:44805204-44805223	MsG0580026786.01.T01:CDS	45.0%
CCGGAATCAAAAAGAGACAC+AGG	+	Chr5:44805461-44805480	None:intergenic	45.0%
GAACATGAATCGCATAGCCT+TGG	+	Chr5:44805626-44805645	None:intergenic	45.0%
TCAGATCGTTGCTCGCATAT+TGG	-	Chr5:44805398-44805417	MsG0580026786.01.T01:CDS	45.0%
TCTCAGGTTCAAACTGGTAG+AGG	+	Chr5:44805368-44805387	None:intergenic	45.0%
TGGAAGGTTTCGTCAGTTCT+GGG	-	Chr5:44805542-44805561	MsG0580026786.01.T01:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	44805114	44805725	44805114	ID=MsG0580026786.01;Name=MsG0580026786.01
Chr5	mRNA	44805114	44805725	44805114	ID=MsG0580026786.01.T01;Parent=MsG0580026786.01;Name=MsG0580026786.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|203
Chr5	exon	44805114	44805725	44805114	ID=MsG0580026786.01.T01:exon:13954;Parent=MsG0580026786.01.T01
Chr5	CDS	44805114	44805725	44805114	ID=MsG0580026786.01.T01:cds;Parent=MsG0580026786.01.T01

Gene Sequence

>MsG0580026786.01.T01

ATGTTGCAAAACATCCATATTCCTAATTTTCAATGTGATGATAACTTGATTTTGATCATGGGAAGAGAAGCAGCAGCAGCAGCAGCCGTACAAGTACAACAGCAAGGACAGGGAGGAACCGCTTACACTGTCGAACAGCTCGTTGCATTCAATCGTTACAATCCTGATATTCTTCAAGATCTTGAAAATTATGTCAATGATCAGGTTTCATCGCAAACTTACAGCCTCGAATCAAATCTATGCCTTCTTCGCCTCTACCAGTTTGAACCTGAGAAAATGAGTTCTCAGATCGTTGCTCGCATATTGGTTAAGGCCCTCATGGCTATGCCAGCTCCAGACTTCAGCCTGTGTCTCTTTTTGATTCCGGAACGTGTGCAAATGGAGGAGCAGTTCAAGACTCTGATTGTTCTGTCTCACTATTTAGAGACTGGAAGGTTTCGTCAGTTCTGGGATGAATCATCGAAAAGTCGTCATATAGTTGAAGCCGTGCCAGGATTTGAGCAGGCAATCCAAGGCTATGCGATTCATGTTCTATCCTTGACTTACCAAAAGATTCCTAGAACTGTGCTTGCTGAGGTTTATCCTTGGACAAATTCCTTGAAAACCAAGTAG

Protein sequence

>MsG0580026786.01.T01

MLQNIHIPNFQCDDNLILIMGREAAAAAAVQVQQQGQGGTAYTVEQLVAFNRYNPDILQDLENYVNDQVSSQTYSLESNLCLLRLYQFEPEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDESSKSRHIVEAVPGFEQAIQGYAIHVLSLTYQKIPRTVLAEVYPWTNSLKTK*