Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027877.01.T01 | XP_003615144.1 | 95.253 | 316 | 14 | 1 | 1 | 315 | 1 | 316 | 0 | 617 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027877.01.T01 | O82161 | 73.397 | 312 | 73 | 5 | 9 | 315 | 7 | 313 | 3.17E-161 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027877.01.T01 | G7KBC1 | 95.253 | 316 | 14 | 1 | 1 | 315 | 1 | 316 | 0.0 | 617 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380017116.01 | MsG0580027877.01 | 0.854244 | 1.400407e-61 | 3.108159e-58 |
| MsG0580027860.01 | MsG0580027877.01 | 0.826332 | 2.875401e-54 | 2.688401e-51 |
| MsG0580027863.01 | MsG0580027877.01 | 0.847316 | 1.248973e-59 | 2.211001e-56 |
| MsG0580027875.01 | MsG0580027877.01 | 0.800032 | 1.742784e-48 | 8.031729e-46 |
| MsG0580027876.01 | MsG0580027877.01 | 0.865607 | 5.222656e-65 | 1.709719e-61 |
| MsG0580027877.01 | MsG0580029133.01 | 0.812821 | 3.495434e-51 | 2.244813e-48 |
| MsG0580027877.01 | MsG0680030621.01 | 0.825347 | 4.925088e-54 | 4.477480e-51 |
| MsG0580027877.01 | MsG0880046475.01 | 0.818408 | 1.991050e-52 | 1.489270e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027877.01.T01 | MTR_5g064360 | 95.253 | 316 | 14 | 1 | 1 | 315 | 1 | 316 | 0.0 | 617 |
| MsG0580027877.01.T01 | MTR_5g064345 | 93.333 | 315 | 21 | 0 | 1 | 315 | 1 | 315 | 0.0 | 606 |
| MsG0580027877.01.T01 | MTR_5g464340 | 92.063 | 315 | 25 | 0 | 1 | 315 | 1 | 315 | 0.0 | 598 |
| MsG0580027877.01.T01 | MTR_5g064340 | 92.063 | 315 | 25 | 0 | 1 | 315 | 1 | 315 | 0.0 | 598 |
| MsG0580027877.01.T01 | MTR_3g074890 | 77.441 | 297 | 53 | 4 | 20 | 315 | 21 | 304 | 6.86e-168 | 468 |
| MsG0580027877.01.T01 | MTR_3g074860 | 77.778 | 297 | 52 | 4 | 20 | 315 | 21 | 304 | 1.40e-167 | 468 |
| MsG0580027877.01.T01 | MTR_3g074830 | 70.740 | 311 | 86 | 4 | 9 | 315 | 36 | 345 | 3.53e-151 | 428 |
| MsG0580027877.01.T01 | MTR_4g094240 | 60.702 | 285 | 98 | 3 | 31 | 315 | 30 | 300 | 2.01e-120 | 348 |
| MsG0580027877.01.T01 | MTR_2g009070 | 52.665 | 319 | 131 | 8 | 1 | 315 | 2 | 304 | 1.19e-116 | 338 |
| MsG0580027877.01.T01 | MTR_1g076470 | 35.505 | 307 | 176 | 8 | 6 | 300 | 33 | 329 | 1.50e-45 | 158 |
| MsG0580027877.01.T01 | MTR_4g033790 | 34.602 | 289 | 167 | 8 | 23 | 300 | 52 | 329 | 1.70e-45 | 158 |
| MsG0580027877.01.T01 | MTR_8g071310 | 70.588 | 68 | 20 | 0 | 248 | 315 | 18 | 85 | 7.01e-27 | 101 |
| MsG0580027877.01.T01 | MTR_8g088900 | 59.375 | 96 | 28 | 1 | 231 | 315 | 277 | 372 | 1.13e-25 | 105 |
| MsG0580027877.01.T01 | MTR_4g013230 | 75.385 | 65 | 13 | 1 | 251 | 315 | 79 | 140 | 1.39e-25 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027877.01.T01 | AT4G08950 | 70.569 | 299 | 80 | 5 | 22 | 315 | 19 | 314 | 3.67e-147 | 416 |
| MsG0580027877.01.T01 | AT1G35140 | 62.739 | 314 | 111 | 2 | 1 | 314 | 1 | 308 | 4.50e-140 | 398 |
| MsG0580027877.01.T01 | AT5G64260 | 56.467 | 317 | 124 | 6 | 1 | 315 | 1 | 305 | 8.74e-121 | 349 |
| MsG0580027877.01.T01 | AT5G09440 | 59.124 | 274 | 83 | 7 | 44 | 315 | 32 | 278 | 2.70e-101 | 299 |
| MsG0580027877.01.T01 | AT5G51550 | 34.551 | 301 | 175 | 8 | 23 | 312 | 42 | 331 | 2.27e-46 | 160 |
| MsG0580027877.01.T01 | AT3G02970 | 31.229 | 301 | 169 | 7 | 45 | 313 | 36 | 330 | 1.65e-44 | 155 |
| MsG0580027877.01.T01 | AT2G35150 | 33.846 | 325 | 192 | 10 | 1 | 311 | 1 | 316 | 2.68e-42 | 149 |
| MsG0580027877.01.T01 | AT2G17230 | 33.007 | 306 | 183 | 9 | 19 | 312 | 62 | 357 | 4.01e-42 | 149 |
Find 75 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTCACCAACCAATTTA+TGG | 0.182864 | 5:+70161688 | MsG0580027877.01.T01:CDS |
| TCTTATGGTGCACACATAAA+TGG | 0.215092 | 5:+70161595 | MsG0580027877.01.T01:CDS |
| TCAAGACCCACATCATTATT+TGG | 0.238207 | 5:-70161736 | None:intergenic |
| CTTGACGAGAATTATTCTTT+AGG | 0.281724 | 5:+70161436 | MsG0580027877.01.T01:CDS |
| GGAACCCATGGTTCTTCTTA+TGG | 0.283880 | 5:+70161580 | MsG0580027877.01.T01:CDS |
| AATCAGTTATGATGGCTCTT+TGG | 0.297339 | 5:-70161267 | None:intergenic |
| GCACTTTGTGGACCATAAAT+TGG | 0.298303 | 5:-70161700 | None:intergenic |
| GCTTCCAAAGGAGCTTCTTT+TGG | 0.308698 | 5:-70161835 | None:intergenic |
| TACAATGCAAATGGTGATAA+TGG | 0.322947 | 5:+70161946 | MsG0580027877.01.T01:CDS |
| TTGATGCGAGTTTAAGGATT+TGG | 0.323024 | 5:-70161477 | None:intergenic |
| TGGTTATGCTGGGGACCTTT+TGG | 0.338446 | 5:+70161900 | MsG0580027877.01.T01:CDS |
| GAAACAAGTTCGCGTACATT+TGG | 0.347338 | 5:+70161623 | MsG0580027877.01.T01:CDS |
| GCAGTGAAATTGTGAGAAAA+AGG | 0.351171 | 5:-70161117 | None:intergenic |
| GTTAACTGATTTCTTGTTGT+TGG | 0.351760 | 5:-70161386 | None:intergenic |
| ATCAGTTATGATGGCTCTTT+GGG | 0.364014 | 5:-70161266 | None:intergenic |
| AGGACCAAAAGAAGCTCCTT+TGG | 0.376105 | 5:+70161831 | MsG0580027877.01.T01:CDS |
| CCATAAATTGGTTGGTGAAA+TGG | 0.381983 | 5:-70161688 | None:intergenic |
| AAATCTCAATCAACCTCATT+TGG | 0.382865 | 5:+70161224 | MsG0580027877.01.T01:CDS |
| GGAACTGTAACAAATCCTTT+TGG | 0.389276 | 5:+70161793 | MsG0580027877.01.T01:CDS |
| TTTCTTGTTGTTGGTGAGTT+GGG | 0.396018 | 5:-70161377 | None:intergenic |
| AAACAAGTTCGCGTACATTT+GGG | 0.409022 | 5:+70161624 | MsG0580027877.01.T01:CDS |
| GAAGCTGCTTCTGCTTGTAC+TGG | 0.410385 | 5:+70161853 | MsG0580027877.01.T01:CDS |
| CATTATTTGGTGCAACCAAT+GGG | 0.411373 | 5:-70161723 | None:intergenic |
| GGAGCTTATCCTGGTTATGC+TGG | 0.426719 | 5:+70161889 | MsG0580027877.01.T01:CDS |
| GGTATTGAAATTTAAGTTGT+TGG | 0.428857 | 5:-70161177 | None:intergenic |
| CTAACACATCAACAGCTGTT+AGG | 0.440071 | 5:-70161531 | None:intergenic |
| GATGTGGTTGTTCCTTGTTT+AGG | 0.441091 | 5:-70161310 | None:intergenic |
| ATTTCTTGTTGTTGGTGAGT+TGG | 0.453236 | 5:-70161378 | None:intergenic |
| TCATTATTTGGTGCAACCAA+TGG | 0.455875 | 5:-70161724 | None:intergenic |
| TGAAAATATCCATTACCAAA+AGG | 0.461381 | 5:-70161808 | None:intergenic |
| CACTGAGGAGAGGACCTTTG+TGG | 0.465051 | 5:-70161198 | None:intergenic |
| AATAATGATGTGGGTCTTGA+CGG | 0.466291 | 5:+70161739 | MsG0580027877.01.T01:CDS |
| GCAACCAATGGGGCACTTTG+TGG | 0.467257 | 5:-70161712 | None:intergenic |
| TGTACTGGTGTTTATGCTAA+AGG | 0.474337 | 5:+70161868 | MsG0580027877.01.T01:CDS |
| ATCCTTAAACTCGCATCAAA+AGG | 0.475704 | 5:+70161481 | MsG0580027877.01.T01:CDS |
| AGCTGTTAGGACAACATTGA+TGG | 0.491325 | 5:-70161518 | None:intergenic |
| TCAATCAACCTCATTTGGTA+TGG | 0.491730 | 5:+70161229 | MsG0580027877.01.T01:CDS |
| GAGTAGCTAGTGAGAGAGCT+AGG | 0.494212 | 5:-70161408 | None:intergenic |
| TATGCTAAAGGAGCTTATCC+TGG | 0.497752 | 5:+70161880 | MsG0580027877.01.T01:CDS |
| GCTGTTGATGTGTTAGTTGA+CGG | 0.514424 | 5:+70161538 | MsG0580027877.01.T01:CDS |
| GTTATGATGGCTCTTTGGGA+TGG | 0.520405 | 5:-70161262 | None:intergenic |
| GGTTATGAAATCAGTTATGA+TGG | 0.523193 | 5:-70161275 | None:intergenic |
| GAGCTTATCCTGGTTATGCT+GGG | 0.526776 | 5:+70161890 | MsG0580027877.01.T01:CDS |
| TGGTCCACAAAGTGCCCCAT+TGG | 0.532886 | 5:+70161708 | MsG0580027877.01.T01:CDS |
| TCCTTGTTTAGGAGAAGAGA+GGG | 0.537003 | 5:-70161299 | None:intergenic |
| TTCCTTGTTTAGGAGAAGAG+AGG | 0.538941 | 5:-70161300 | None:intergenic |
| TTCCACCACATGGCAACGGA+TGG | 0.549250 | 5:-70161337 | None:intergenic |
| AACCATCCGTTGCCATGTGG+TGG | 0.557856 | 5:+70161335 | MsG0580027877.01.T01:CDS |
| ATGCAAATGGTGATAATGGA+AGG | 0.560708 | 5:+70161950 | MsG0580027877.01.T01:CDS |
| AAGTTCGCGTACATTTGGGT+TGG | 0.562836 | 5:+70161628 | MsG0580027877.01.T01:CDS |
| TCAAGTAGGTGTGGAACCCA+TGG | 0.564282 | 5:+70161568 | MsG0580027877.01.T01:CDS |
| AAAAGGTCCCCAGCATAACC+AGG | 0.566674 | 5:-70161898 | None:intergenic |
| TGATTTCCACCACATGGCAA+CGG | 0.566765 | 5:-70161341 | None:intergenic |
| AACCTCAGTTTGTTCTACGT+TGG | 0.567385 | 5:+70162005 | MsG0580027877.01.T01:CDS |
| TTCGGTTGATTTCCACCACA+TGG | 0.571976 | 5:-70161347 | None:intergenic |
| TGATGTGGGTCTTGACGGAA+TGG | 0.585857 | 5:+70161744 | MsG0580027877.01.T01:CDS |
| GGTGCTAGTTACAATGCAAA+TGG | 0.592911 | 5:+70161937 | MsG0580027877.01.T01:CDS |
| AATTCAGAGACACAATGTGC+TGG | 0.594460 | 5:+70161652 | MsG0580027877.01.T01:CDS |
| CAAGCAGAAGCAGCTTCCAA+AGG | 0.596865 | 5:-70161847 | None:intergenic |
| TTTGTGGACCATAAATTGGT+TGG | 0.611426 | 5:-70161696 | None:intergenic |
| TTGTTTAGGAGAAGAGAGGG+AGG | 0.623459 | 5:-70161296 | None:intergenic |
| CTTAAATTTCAATACCACAA+AGG | 0.628204 | 5:+70161184 | MsG0580027877.01.T01:CDS |
| AGCTTATCCTGGTTATGCTG+GGG | 0.628401 | 5:+70161891 | MsG0580027877.01.T01:CDS |
| GGTTGCACCAAATAATGATG+TGG | 0.630115 | 5:+70161729 | MsG0580027877.01.T01:CDS |
| ATGGTGCACACATAAATGGA+AGG | 0.634156 | 5:+70161599 | MsG0580027877.01.T01:CDS |
| GTGCACCATAAGAAGAACCA+TGG | 0.640198 | 5:-70161585 | None:intergenic |
| TGCACCATAAGAAGAACCAT+GGG | 0.641337 | 5:-70161584 | None:intergenic |
| TCCCTCTCTTCTCCTAAACA+AGG | 0.657496 | 5:+70161298 | MsG0580027877.01.T01:CDS |
| CACAAAGGTCCTCTCCTCAG+TGG | 0.675763 | 5:+70161199 | MsG0580027877.01.T01:CDS |
| TACCAACGTAGAACAAACTG+AGG | 0.678933 | 5:-70162007 | None:intergenic |
| CACAACCATCCGTTGCCATG+TGG | 0.679241 | 5:+70161332 | MsG0580027877.01.T01:CDS |
| ATTATTTGGTGCAACCAATG+GGG | 0.687486 | 5:-70161722 | None:intergenic |
| GTTGCACCAAATAATGATGT+GGG | 0.702712 | 5:+70161730 | MsG0580027877.01.T01:CDS |
| GGCAACGGATGGTTGTGATG+TGG | 0.719972 | 5:-70161326 | None:intergenic |
| AATGTGCTGGTCAATGCGCG+TGG | 0.729505 | 5:+70161665 | MsG0580027877.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CTTAAATTTCAATACCACAA+AGG | + | Chr5:70161184-70161203 | MsG0580027877.01.T01:CDS | 25.0% |
| ! | TGAAAATATCCATTACCAAA+AGG | - | Chr5:70161811-70161830 | None:intergenic | 25.0% |
| !!! | GGTATTGAAATTTAAGTTGT+TGG | - | Chr5:70161180-70161199 | None:intergenic | 25.0% |
| !!! | TTTGGTAATGGATATTTTCA+AGG | + | Chr5:70161811-70161830 | MsG0580027877.01.T01:CDS | 25.0% |
| AAATCTCAATCAACCTCATT+TGG | + | Chr5:70161224-70161243 | MsG0580027877.01.T01:CDS | 30.0% | |
| CAGTGAAATTGTGAGAAAAA+GGG | - | Chr5:70161119-70161138 | None:intergenic | 30.0% | |
| CTTGACGAGAATTATTCTTT+AGG | + | Chr5:70161436-70161455 | MsG0580027877.01.T01:CDS | 30.0% | |
| GGTTATGAAATCAGTTATGA+TGG | - | Chr5:70161278-70161297 | None:intergenic | 30.0% | |
| TACAATGCAAATGGTGATAA+TGG | + | Chr5:70161946-70161965 | MsG0580027877.01.T01:CDS | 30.0% | |
| ! | GTAACAAATCCTTTTGGTAA+TGG | + | Chr5:70161799-70161818 | MsG0580027877.01.T01:CDS | 30.0% |
| ! | GTTAACTGATTTCTTGTTGT+TGG | - | Chr5:70161389-70161408 | None:intergenic | 30.0% |
| ! | TAGAACAAACTGAGGTTTTT+GGG | - | Chr5:70162002-70162021 | None:intergenic | 30.0% |
| ! | TGAATTTTCCATACCAAATG+AGG | - | Chr5:70161240-70161259 | None:intergenic | 30.0% |
| !!! | AATGTTGCTAGTCTTTTAAC+TGG | + | Chr5:70161772-70161791 | MsG0580027877.01.T01:CDS | 30.0% |
| AAACAAGTTCGCGTACATTT+GGG | + | Chr5:70161624-70161643 | MsG0580027877.01.T01:CDS | 35.0% | |
| AATAATGATGTGGGTCTTGA+CGG | + | Chr5:70161739-70161758 | MsG0580027877.01.T01:CDS | 35.0% | |
| AATCAGTTATGATGGCTCTT+TGG | - | Chr5:70161270-70161289 | None:intergenic | 35.0% | |
| ATCAGTTATGATGGCTCTTT+GGG | - | Chr5:70161269-70161288 | None:intergenic | 35.0% | |
| ATCCTTAAACTCGCATCAAA+AGG | + | Chr5:70161481-70161500 | MsG0580027877.01.T01:CDS | 35.0% | |
| CCATTTCACCAACCAATTTA+TGG | + | Chr5:70161688-70161707 | MsG0580027877.01.T01:CDS | 35.0% | |
| GCAGTGAAATTGTGAGAAAA+AGG | - | Chr5:70161120-70161139 | None:intergenic | 35.0% | |
| GTTGCACCAAATAATGATGT+GGG | + | Chr5:70161730-70161749 | MsG0580027877.01.T01:CDS | 35.0% | |
| TCAAGACCCACATCATTATT+TGG | - | Chr5:70161739-70161758 | None:intergenic | 35.0% | |
| TCAATCAACCTCATTTGGTA+TGG | + | Chr5:70161229-70161248 | MsG0580027877.01.T01:CDS | 35.0% | |
| TCTTATGGTGCACACATAAA+TGG | + | Chr5:70161595-70161614 | MsG0580027877.01.T01:CDS | 35.0% | |
| TTGATGCGAGTTTAAGGATT+TGG | - | Chr5:70161480-70161499 | None:intergenic | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | Chr5:70161699-70161718 | None:intergenic | 35.0% | |
| ! | CTTTTGGTCGATAAAACAAG+TGG | + | Chr5:70161916-70161935 | MsG0580027877.01.T01:CDS | 35.0% |
| ! | GGAACTGTAACAAATCCTTT+TGG | + | Chr5:70161793-70161812 | MsG0580027877.01.T01:CDS | 35.0% |
| ! | GTAGAACAAACTGAGGTTTT+TGG | - | Chr5:70162003-70162022 | None:intergenic | 35.0% |
| ! | TGTACTGGTGTTTATGCTAA+AGG | + | Chr5:70161868-70161887 | MsG0580027877.01.T01:CDS | 35.0% |
| ! | TTGACGGTTTTTGTTCAAGT+AGG | + | Chr5:70161554-70161573 | MsG0580027877.01.T01:CDS | 35.0% |
| !! | ATGCAAATGGTGATAATGGA+AGG | + | Chr5:70161950-70161969 | MsG0580027877.01.T01:CDS | 35.0% |
| !! | ATTATTTGGTGCAACCAATG+GGG | - | Chr5:70161725-70161744 | None:intergenic | 35.0% |
| !! | ATTTCTTGTTGTTGGTGAGT+TGG | - | Chr5:70161381-70161400 | None:intergenic | 35.0% |
| !! | CATTATTTGGTGCAACCAAT+GGG | - | Chr5:70161726-70161745 | None:intergenic | 35.0% |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | Chr5:70161691-70161710 | None:intergenic | 35.0% |
| !! | GGTGAGTTGGGAATATTTTT+CGG | - | Chr5:70161368-70161387 | None:intergenic | 35.0% |
| !! | TCATTATTTGGTGCAACCAA+TGG | - | Chr5:70161727-70161746 | None:intergenic | 35.0% |
| !! | TTTCTTGTTGTTGGTGAGTT+GGG | - | Chr5:70161380-70161399 | None:intergenic | 35.0% |
| !!! | CACTTGTTTTATCGACCAAA+AGG | - | Chr5:70161918-70161937 | None:intergenic | 35.0% |
| AATTCAGAGACACAATGTGC+TGG | + | Chr5:70161652-70161671 | MsG0580027877.01.T01:CDS | 40.0% | |
| AGCTGTTAGGACAACATTGA+TGG | - | Chr5:70161521-70161540 | None:intergenic | 40.0% | |
| ATGGTGCACACATAAATGGA+AGG | + | Chr5:70161599-70161618 | MsG0580027877.01.T01:CDS | 40.0% | |
| CTAACACATCAACAGCTGTT+AGG | - | Chr5:70161534-70161553 | None:intergenic | 40.0% | |
| GAAACAAGTTCGCGTACATT+TGG | + | Chr5:70161623-70161642 | MsG0580027877.01.T01:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | Chr5:70161703-70161722 | None:intergenic | 40.0% | |
| GCTGTTGATGTGTTAGTTGA+CGG | + | Chr5:70161538-70161557 | MsG0580027877.01.T01:CDS | 40.0% | |
| GGTGCTAGTTACAATGCAAA+TGG | + | Chr5:70161937-70161956 | MsG0580027877.01.T01:CDS | 40.0% | |
| GGTTGCACCAAATAATGATG+TGG | + | Chr5:70161729-70161748 | MsG0580027877.01.T01:CDS | 40.0% | |
| TACCAACGTAGAACAAACTG+AGG | - | Chr5:70162010-70162029 | None:intergenic | 40.0% | |
| TATGCTAAAGGAGCTTATCC+TGG | + | Chr5:70161880-70161899 | MsG0580027877.01.T01:CDS | 40.0% | |
| TGCACCATAAGAAGAACCAT+GGG | - | Chr5:70161587-70161606 | None:intergenic | 40.0% | |
| ! | AACCTCAGTTTGTTCTACGT+TGG | + | Chr5:70162005-70162024 | MsG0580027877.01.T01:CDS | 40.0% |
| ! | GATGTGGTTGTTCCTTGTTT+AGG | - | Chr5:70161313-70161332 | None:intergenic | 40.0% |
| ! | GGTTTTTGTTCAAGTAGGTG+TGG | + | Chr5:70161559-70161578 | MsG0580027877.01.T01:CDS | 40.0% |
| ! | GTCCTTTTGATGCGAGTTTA+AGG | - | Chr5:70161486-70161505 | None:intergenic | 40.0% |
| ! | TCCTTGTTTAGGAGAAGAGA+GGG | - | Chr5:70161302-70161321 | None:intergenic | 40.0% |
| ! | TGATTGAGATTTTGCCACTG+AGG | - | Chr5:70161216-70161235 | None:intergenic | 40.0% |
| ! | TTCCTTGTTTAGGAGAAGAG+AGG | - | Chr5:70161303-70161322 | None:intergenic | 40.0% |
| AAGTTCGCGTACATTTGGGT+TGG | + | Chr5:70161628-70161647 | MsG0580027877.01.T01:CDS | 45.0% | |
| AGCTTATCCTGGTTATGCTG+GGG | + | Chr5:70161891-70161910 | MsG0580027877.01.T01:CDS | 45.0% | |
| AGGACCAAAAGAAGCTCCTT+TGG | + | Chr5:70161831-70161850 | MsG0580027877.01.T01:CDS | 45.0% | |
| GAGCTTATCCTGGTTATGCT+GGG | + | Chr5:70161890-70161909 | MsG0580027877.01.T01:CDS | 45.0% | |
| GGAACCCATGGTTCTTCTTA+TGG | + | Chr5:70161580-70161599 | MsG0580027877.01.T01:CDS | 45.0% | |
| GTGCACCATAAGAAGAACCA+TGG | - | Chr5:70161588-70161607 | None:intergenic | 45.0% | |
| TCCCTCTCTTCTCCTAAACA+AGG | + | Chr5:70161298-70161317 | MsG0580027877.01.T01:CDS | 45.0% | |
| TGATTTCCACCACATGGCAA+CGG | - | Chr5:70161344-70161363 | None:intergenic | 45.0% | |
| TTGTTTAGGAGAAGAGAGGG+AGG | - | Chr5:70161299-70161318 | None:intergenic | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | Chr5:70161838-70161857 | None:intergenic | 45.0% |
| ! | GTTATGATGGCTCTTTGGGA+TGG | - | Chr5:70161265-70161284 | None:intergenic | 45.0% |
| ! | TTCGGTTGATTTCCACCACA+TGG | - | Chr5:70161350-70161369 | None:intergenic | 45.0% |
| !!! | GTTTTTGGGTCAACAATCGC+AGG | - | Chr5:70161988-70162007 | None:intergenic | 45.0% |
| AAAAGGTCCCCAGCATAACC+AGG | - | Chr5:70161901-70161920 | None:intergenic | 50.0% | |
| CAAGCAGAAGCAGCTTCCAA+AGG | - | Chr5:70161850-70161869 | None:intergenic | 50.0% | |
| GAAGCTGCTTCTGCTTGTAC+TGG | + | Chr5:70161853-70161872 | MsG0580027877.01.T01:CDS | 50.0% | |
| GAGTAGCTAGTGAGAGAGCT+AGG | - | Chr5:70161411-70161430 | None:intergenic | 50.0% | |
| GGAGCTTATCCTGGTTATGC+TGG | + | Chr5:70161889-70161908 | MsG0580027877.01.T01:CDS | 50.0% | |
| TCAAGTAGGTGTGGAACCCA+TGG | + | Chr5:70161568-70161587 | MsG0580027877.01.T01:CDS | 50.0% | |
| TGATGTGGGTCTTGACGGAA+TGG | + | Chr5:70161744-70161763 | MsG0580027877.01.T01:CDS | 50.0% | |
| ! | GAGATTTTGCCACTGAGGAG+AGG | - | Chr5:70161211-70161230 | None:intergenic | 50.0% |
| ! | TGGTTATGCTGGGGACCTTT+TGG | + | Chr5:70161900-70161919 | MsG0580027877.01.T01:CDS | 50.0% |
| AACCATCCGTTGCCATGTGG+TGG | + | Chr5:70161335-70161354 | MsG0580027877.01.T01:CDS | 55.0% | |
| CACAAAGGTCCTCTCCTCAG+TGG | + | Chr5:70161199-70161218 | MsG0580027877.01.T01:CDS | 55.0% | |
| CACAACCATCCGTTGCCATG+TGG | + | Chr5:70161332-70161351 | MsG0580027877.01.T01:CDS | 55.0% | |
| CACTGAGGAGAGGACCTTTG+TGG | - | Chr5:70161201-70161220 | None:intergenic | 55.0% | |
| GGCAACGGATGGTTGTGATG+TGG | - | Chr5:70161329-70161348 | None:intergenic | 55.0% | |
| TTCCACCACATGGCAACGGA+TGG | - | Chr5:70161340-70161359 | None:intergenic | 55.0% | |
| ! | AATGTGCTGGTCAATGCGCG+TGG | + | Chr5:70161665-70161684 | MsG0580027877.01.T01:CDS | 55.0% |
| ! | GCAACCAATGGGGCACTTTG+TGG | - | Chr5:70161715-70161734 | None:intergenic | 55.0% |
| ! | TGGTCCACAAAGTGCCCCAT+TGG | + | Chr5:70161708-70161727 | MsG0580027877.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 70161085 | 70162032 | 70161085 | ID=MsG0580027877.01;Name=MsG0580027877.01 |
| Chr5 | mRNA | 70161085 | 70162032 | 70161085 | ID=MsG0580027877.01.T01;Parent=MsG0580027877.01;Name=MsG0580027877.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|315 |
| Chr5 | exon | 70161085 | 70162032 | 70161085 | ID=MsG0580027877.01.T01:exon:25522;Parent=MsG0580027877.01.T01 |
| Chr5 | CDS | 70161085 | 70162032 | 70161085 | ID=MsG0580027877.01.T01:cds;Parent=MsG0580027877.01.T01 |
| Gene Sequence |
| Protein sequence |
