AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029133.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029133.01.T01 MTR_5g081710 87.413 286 2 1 1 286 55 306 8.02e-175 485
MsG0580029133.01.T01 MTR_3g070000 79.371 286 25 1 1 286 71 322 1.28e-158 444
MsG0580029133.01.T01 MTR_3g462070 71.678 286 47 1 1 286 56 307 9.66e-147 414
MsG0580029133.01.T01 MTR_4g018760 64.789 284 66 1 1 284 59 308 2.44e-125 360
MsG0580029133.01.T01 MTR_8g090130 64.211 285 66 3 1 284 58 307 3.38e-122 352
MsG0580029133.01.T01 MTR_4g101860 58.392 286 85 1 1 286 99 350 2.04e-102 303
MsG0580029133.01.T01 MTR_1g030320 31.449 283 158 3 1 283 60 306 1.70e-34 128
MsG0580029133.01.T01 MTR_3g072380 32.056 287 151 6 1 283 61 307 2.64e-34 127
MsG0580029133.01.T01 MTR_0011s0320 28.169 284 162 4 1 282 62 305 3.07e-19 86.7
MsG0580029133.01.T01 MTR_3g107470 26.429 280 160 5 7 282 72 309 4.00e-16 77.8
MsG0580029133.01.T01 MTR_4g114360 27.682 289 157 6 1 282 62 305 8.55e-16 76.6
MsG0580029133.01.T01 MTR_3g072380 29.143 175 88 2 1 175 61 199 1.36e-15 74.7
MsG0580029133.01.T01 MTR_7g110380 26.792 265 150 5 24 285 86 309 1.16e-14 73.9
MsG0580029133.01.T01 MTR_4g123900 30.435 161 102 4 128 285 152 305 1.60e-12 67.4
MsG0580029133.01.T01 MTR_4g105630 22.744 277 171 5 14 283 137 377 7.28e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029133.01.T01 AT3G11320 77.273 286 31 1 1 286 57 308 1.06e-155 437
MsG0580029133.01.T01 AT5G05820 75.874 286 35 1 1 286 57 308 1.71e-153 431
MsG0580029133.01.T01 AT3G10290 62.676 284 72 1 1 284 104 353 3.16e-122 353
MsG0580029133.01.T01 AT5G04160 63.028 284 71 1 1 284 58 307 4.56e-122 351
MsG0580029133.01.T01 AT1G12500 59.353 278 79 1 9 286 113 356 5.98e-107 315
MsG0580029133.01.T01 AT1G21870 33.333 285 150 6 1 283 61 307 3.73e-36 132
MsG0580029133.01.T01 AT1G77610 32.394 284 154 4 1 283 55 301 1.47e-34 128
MsG0580029133.01.T01 AT5G11230 28.881 277 149 8 8 282 79 309 1.51e-17 82.0
MsG0580029133.01.T01 AT4G32390 27.338 278 160 6 7 282 72 309 5.42e-16 77.4
MsG0580029133.01.T01 AT5G25400 27.143 280 158 5 7 282 72 309 8.95e-16 77.0
MsG0580029133.01.T01 AT2G25520 27.500 280 157 5 7 282 72 309 3.25e-15 75.1
MsG0580029133.01.T01 AT1G53660 24.514 257 152 7 30 285 1 216 8.08e-14 69.7
MsG0580029133.01.T01 AT1G53660 24.514 257 152 7 30 285 95 310 1.41e-13 70.5
MsG0580029133.01.T01 AT1G53660 24.514 257 152 7 30 285 61 276 1.59e-13 69.7
MsG0580029133.01.T01 AT1G53660 24.514 257 152 7 30 285 113 328 1.65e-13 70.1
MsG0580029133.01.T01 AT3G17430 25.660 265 153 5 24 285 83 306 4.39e-13 69.3
MsG0580029133.01.T01 AT3G17430 25.660 265 153 5 24 285 83 306 4.39e-13 69.3
MsG0580029133.01.T01 AT1G48230 30.526 190 114 5 103 285 55 233 6.40e-13 68.2
MsG0580029133.01.T01 AT1G48230 30.526 190 114 5 103 285 128 306 8.44e-13 68.2
MsG0580029133.01.T01 AT3G14410 23.954 263 151 4 30 286 93 312 1.28e-11 64.7

Find 73 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAAAATAAGAATCTTTA+TGG 0.073374 5:+92771935 MsG0580029133.01.T01:intron
GCTCTTGTTCCTGTTGTTAC+TGG 0.193329 5:+92770304 MsG0580029133.01.T01:CDS
TCTTCCTGCTACACTTTATA+TGG 0.210065 5:+92772260 MsG0580029133.01.T01:CDS
TTGGTACCATGAGCTATTTC+TGG 0.216098 5:-92773482 None:intergenic
TGAAGAAAGAGTTGTATAAT+TGG 0.239436 5:+92773579 MsG0580029133.01.T01:three_prime_UTR
GAACCAAGCTTCCATTTGTT+TGG 0.241327 5:+92772002 MsG0580029133.01.T01:CDS
ATCATTCCAGTGACTGAAAC+TGG 0.253281 5:-92773226 None:intergenic
AAGTTACAATAGTAATTATT+TGG 0.257624 5:+92773740 MsG0580029133.01.T01:three_prime_UTR
TGCAATCGCTTGGTTCAAAA+TGG 0.276655 5:+92770072 MsG0580029133.01.T01:CDS
ATTCTATATAAGAATTCTTT+TGG 0.298235 5:+92773408 MsG0580029133.01.T01:three_prime_UTR
AACCAAGCTTCCATTTGTTT+GGG 0.304562 5:+92772003 MsG0580029133.01.T01:CDS
CTGGACAGTCGCTAATATAA+TGG 0.310617 5:-92773463 None:intergenic
TTCTCGGATTAGGCGTGTTC+CGG 0.320349 5:-92771079 None:intergenic
TACAGAGATCATTCACTTAC+TGG 0.338960 5:-92773508 None:intergenic
TGGACAGTCGCTAATATAAT+GGG 0.365917 5:-92773462 None:intergenic
TATGAAGCACAGACATTTCT+CGG 0.376004 5:-92771095 None:intergenic
GAGACAAATTGTTCAGAATC+AGG 0.384170 5:+92773376 MsG0580029133.01.T01:three_prime_UTR
GTAGTATATGGTACTCAATT+AGG 0.385578 5:+92773671 MsG0580029133.01.T01:three_prime_UTR
AATGGGGAACCCCTTCAATA+AGG 0.386988 5:-92773445 None:intergenic
TTCAATAAGGCTTTCTATGT+GGG 0.392147 5:-92773432 None:intergenic
TACCAGTGCTCTCACCCTTC+AGG 0.394449 5:+92772407 MsG0580029133.01.T01:CDS
GAGATGATGTGAAGATCATT+TGG 0.421654 5:+92772319 MsG0580029133.01.T01:CDS
AGTTTCAGTCACTGGAATGA+TGG 0.435874 5:+92773228 MsG0580029133.01.T01:CDS
GGTTATTCACTCACAGTCCT+TGG 0.450720 5:+92773250 MsG0580029133.01.T01:CDS
AGGTACTTGGGAATGCTAAA+GGG 0.451974 5:+92773164 MsG0580029133.01.T01:intron
CTGGTGTTATCATTGCTAGT+GGG 0.461823 5:+92770323 MsG0580029133.01.T01:CDS
AGAAACCCAGTTTCAGTCAC+TGG 0.462050 5:+92773220 MsG0580029133.01.T01:CDS
AGTTTGTTCATATAGGTACT+TGG 0.462356 5:+92773151 MsG0580029133.01.T01:intron
TTGGAGCCATGTAAAGTAGA+AGG 0.468805 5:-92772221 None:intergenic
CTTCAATAAGGCTTTCTATG+TGG 0.470060 5:-92773433 None:intergenic
ATCATTCACTTACTGGAACT+TGG 0.472047 5:-92773501 None:intergenic
TATGAACCTTCTACTTTACA+TGG 0.472403 5:+92772215 MsG0580029133.01.T01:CDS
GCACAGACATTTCTCGGATT+AGG 0.474688 5:-92771089 None:intergenic
TAGGTACTTGGGAATGCTAA+AGG 0.479924 5:+92773163 MsG0580029133.01.T01:intron
ATATTATGAACCCAAACAAA+TGG 0.482955 5:-92772013 None:intergenic
ATGATAACACCAGTAACAAC+AGG 0.491199 5:-92770313 None:intergenic
AATGATCTTCACATCATCTC+TGG 0.491323 5:-92772316 None:intergenic
AACCCAAACAAATGGAAGCT+TGG 0.492671 5:-92772005 None:intergenic
TCTTCCATATAAAGTGTAGC+AGG 0.499141 5:-92772264 None:intergenic
TCAGCTACGTTGCAATCGCT+TGG 0.501471 5:+92770062 None:intergenic
CATTCCTCAGTATGCCAACA+TGG 0.511027 5:-92773537 None:intergenic
AGAAGGAAAACAACAGCCAT+TGG 0.520144 5:-92772240 None:intergenic
GTTTGTTCATATAGGTACTT+GGG 0.521176 5:+92773152 MsG0580029133.01.T01:intron
TCTACTTTACATGGCTCCAA+TGG 0.521350 5:+92772224 MsG0580029133.01.T01:CDS
TACCTGAAGGGTGAGAGCAC+TGG 0.521847 5:-92772409 None:intergenic
GTTTCAGTCACTGGAATGAT+GGG 0.522262 5:+92773229 MsG0580029133.01.T01:CDS
CACATAGAAAGCCTTATTGA+AGG 0.522661 5:+92773434 MsG0580029133.01.T01:three_prime_UTR
TATAAAGTGTAGCAGGAAGA+AGG 0.527906 5:-92772257 None:intergenic
CGAGAACGCATGAATTGCAT+TGG 0.534806 5:-92770097 None:intergenic
ACATAGAAAGCCTTATTGAA+GGG 0.540008 5:+92773435 MsG0580029133.01.T01:three_prime_UTR
GTGTCGTTTAATCAAGCTAT+CGG 0.549847 5:+92770205 MsG0580029133.01.T01:CDS
GATTAGGCGTGTTCCGGTGT+CGG 0.552443 5:-92771073 None:intergenic
TGACGTTGAAGAGAGAAGCT+TGG 0.560897 5:+92770269 MsG0580029133.01.T01:CDS
ACTGGTGTTATCATTGCTAG+TGG 0.562721 5:+92770322 MsG0580029133.01.T01:CDS
TCATTCCAGTGACTGAAACT+GGG 0.574484 5:-92773225 None:intergenic
GCACGACACGTGTCCGACAC+CGG 0.583281 5:+92771060 MsG0580029133.01.T01:CDS
CAAGTGCGGAATTGAACAGC+AGG 0.586756 5:-92772344 None:intergenic
CATAGAAAGCCTTATTGAAG+GGG 0.588595 5:+92773436 MsG0580029133.01.T01:three_prime_UTR
AAAAGGGAGGCATACCTGAA+GGG 0.598277 5:-92772421 None:intergenic
GGTACTTGGGAATGCTAAAG+GGG 0.601716 5:+92773165 MsG0580029133.01.T01:intron
TATATGGAAGAAAATGTGAT+CGG 0.604039 5:+92772276 MsG0580029133.01.T01:CDS
TCTCTGTACTATACCCATGT+TGG 0.610836 5:+92773523 MsG0580029133.01.T01:three_prime_UTR
TCAATAAGGCTTTCTATGTG+GGG 0.615474 5:-92773431 None:intergenic
GACTGTCCAGAAATAGCTCA+TGG 0.619818 5:+92773476 MsG0580029133.01.T01:three_prime_UTR
TGGTGTTATCATTGCTAGTG+GGG 0.620873 5:+92770324 MsG0580029133.01.T01:CDS
CACTATAAAGTACAACTCCA+AGG 0.624587 5:-92773267 None:intergenic
ATTGACAAAATATGCAAGTG+CGG 0.636129 5:-92772358 None:intergenic
AATATGTGTTGCAGCTACAG+CGG 0.656983 5:+92772031 MsG0580029133.01.T01:CDS
ATTCCTCAGTATGCCAACAT+GGG 0.659167 5:-92773536 None:intergenic
ATACCCATGTTGGCATACTG+AGG 0.672852 5:+92773533 MsG0580029133.01.T01:three_prime_UTR
AAATGTGATCGGCATCACGT+TGG 0.673641 5:+92772287 MsG0580029133.01.T01:CDS
GGACAGTCGCTAATATAATG+GGG 0.684201 5:-92773461 None:intergenic
ATAGCTTGATTAAACGACAC+AGG 0.688704 5:-92770202 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCAAGTTATATAATAAAT+GGG + Chr5:92772152-92772171 MsG0580029133.01.T01:intron 10.0%
!! TTATCAAGTTATATAATAAA+TGG + Chr5:92772151-92772170 MsG0580029133.01.T01:intron 10.0%
!!! AAATGTAAATATTTGTTTTT+AGG + Chr5:92772957-92772976 MsG0580029133.01.T01:intron 10.0%
!!! AAATTTGAAATAAATAAGTT+TGG - Chr5:92770680-92770699 None:intergenic 10.0%
!!! ATTTTTACTTATATTTAAGA+TGG + Chr5:92770717-92770736 MsG0580029133.01.T01:intron 10.0%
!!! TATTTTTTTATTGTAGTATA+TGG + Chr5:92773659-92773678 MsG0580029133.01.T01:three_prime_UTR 10.0%
!!! TTTTGTAATTTTTTATTGTT+GGG + Chr5:92770575-92770594 MsG0580029133.01.T01:intron 10.0%
!! AAGTTACAATAGTAATTATT+TGG + Chr5:92773740-92773759 MsG0580029133.01.T01:three_prime_UTR 15.0%
!! AATCAAATTAAGCAAAATTA+TGG + Chr5:92771506-92771525 MsG0580029133.01.T01:intron 15.0%
!! ATTTCTCAATTAAAAAAATC+TGG + Chr5:92771162-92771181 MsG0580029133.01.T01:intron 15.0%
!! TATGAAAATAAGAATCTTTA+TGG + Chr5:92771935-92771954 MsG0580029133.01.T01:intron 15.0%
!!! AAAATAAGAAGTATAAAAGT+TGG + Chr5:92770907-92770926 MsG0580029133.01.T01:intron 15.0%
!!! AAAGTTTATAAATTGCATTT+TGG + Chr5:92770526-92770545 MsG0580029133.01.T01:intron 15.0%
!!! AAGTTTATAAATTGCATTTT+GGG + Chr5:92770527-92770546 MsG0580029133.01.T01:intron 15.0%
!!! AATATAATTTTCTTAAGCAA+GGG - Chr5:92770606-92770625 None:intergenic 15.0%
!!! AGATTTTTTTAATTGAGAAA+TGG - Chr5:92771163-92771182 None:intergenic 15.0%
!!! ATTCTATATAAGAATTCTTT+TGG + Chr5:92773408-92773427 MsG0580029133.01.T01:three_prime_UTR 15.0%
!!! CTTTTGTAATTTTTTATTGT+TGG + Chr5:92770574-92770593 MsG0580029133.01.T01:intron 15.0%
!!! TAATATAATTTTCTTAAGCA+AGG - Chr5:92770607-92770626 None:intergenic 15.0%
!! AATGATCAAATCTTTATCAT+AGG + Chr5:92771829-92771848 MsG0580029133.01.T01:intron 20.0%
!! AATTTAGTGTGATTATATGT+TGG + Chr5:92771020-92771039 MsG0580029133.01.T01:intron 20.0%
!! ATTAATCACAACAAATGAAA+TGG + Chr5:92770785-92770804 MsG0580029133.01.T01:intron 20.0%
!! TAATGAGTATGATTCAAATA+AGG + Chr5:92773021-92773040 MsG0580029133.01.T01:intron 20.0%
!!! AAGAAACTTGTTTATAACAA+TGG - Chr5:92772542-92772561 None:intergenic 20.0%
!!! AGATTCTTATTTTCATAGTT+TGG - Chr5:92771932-92771951 None:intergenic 20.0%
!!! AGTTTATAAATTGCATTTTG+GGG + Chr5:92770528-92770547 MsG0580029133.01.T01:intron 20.0%
!!! ATCATGTTATTTATGTTTTC+GGG + Chr5:92771262-92771281 MsG0580029133.01.T01:intron 20.0%
!!! ATCTGATTTAAGTTTATCTT+AGG + Chr5:92771721-92771740 MsG0580029133.01.T01:intron 20.0%
!!! GATCATGTTATTTATGTTTT+CGG + Chr5:92771261-92771280 MsG0580029133.01.T01:intron 20.0%
!!! TTTGCTTACATTTTTTTTAG+AGG - Chr5:92770654-92770673 None:intergenic 20.0%
!!! TTTTTGTCTTAATTCCTAAA+GGG + Chr5:92770817-92770836 MsG0580029133.01.T01:intron 20.0%
!!! TTTTTTGTCTTAATTCCTAA+AGG + Chr5:92770816-92770835 MsG0580029133.01.T01:intron 20.0%
! ACTTAAATCAGATATTTCAC+TGG - Chr5:92771714-92771733 None:intergenic 25.0%
! AGTTGTATGACTATATGAAA+AGG - Chr5:92772441-92772460 None:intergenic 25.0%
! ATATTATGAACCCAAACAAA+TGG - Chr5:92772016-92772035 None:intergenic 25.0%
! CAGAAGAAAACAAATTAATG+AGG - Chr5:92772131-92772150 None:intergenic 25.0%
! CATAATTATTTCAAACCTCT+TGG + Chr5:92772598-92772617 MsG0580029133.01.T01:intron 25.0%
! GTTATTCAATTTGTACGATT+TGG + Chr5:92770455-92770474 MsG0580029133.01.T01:intron 25.0%
! GTTGTATGACTATATGAAAA+GGG - Chr5:92772440-92772459 None:intergenic 25.0%
! TATAACAATGGAAAAAAGCT+AGG - Chr5:92772530-92772549 None:intergenic 25.0%
! TATATGGAAGAAAATGTGAT+CGG + Chr5:92772276-92772295 MsG0580029133.01.T01:CDS 25.0%
! TGAAGAAAGAGTTGTATAAT+TGG + Chr5:92773579-92773598 MsG0580029133.01.T01:three_prime_UTR 25.0%
! TGATGTTCTCAAATTATTAG+CGG - Chr5:92770997-92771016 None:intergenic 25.0%
! TTCAGATCATTAGATTTCTT+TGG + Chr5:92772835-92772854 MsG0580029133.01.T01:intron 25.0%
!! AGATTCTTTTATGTACACAA+TGG - Chr5:92771679-92771698 None:intergenic 25.0%
!! ATGTTTTGTGACCAAAAAAT+TGG - Chr5:92772388-92772407 None:intergenic 25.0%
!! TACTAATGACTTTTGATAAG+TGG - Chr5:92771538-92771557 None:intergenic 25.0%
!!! AATGCTGCTTATATTTTCAT+TGG + Chr5:92772636-92772655 MsG0580029133.01.T01:intron 25.0%
!!! ACAATTGTTTCTGATTTACA+AGG - Chr5:92770844-92770863 None:intergenic 25.0%
!!! AGTATATTCTAGAACAGTTT+TGG + Chr5:92770745-92770764 MsG0580029133.01.T01:intron 25.0%
!!! TATTTATGTTTTCGGGATTT+TGG + Chr5:92771269-92771288 MsG0580029133.01.T01:intron 25.0%
!!! TCAATTGTTTTTATGAGCAA+TGG + Chr5:92771623-92771642 MsG0580029133.01.T01:intron 25.0%
!!! TGGACTTTGTTTTTAAAACT+GGG + Chr5:92771452-92771471 MsG0580029133.01.T01:intron 25.0%
!!! TTGGACTTTGTTTTTAAAAC+TGG + Chr5:92771451-92771470 MsG0580029133.01.T01:intron 25.0%
!!! TTTTTGGTAATGTTTCGTTA+CGG + Chr5:92770173-92770192 MsG0580029133.01.T01:CDS 25.0%
ACAATTGAACTAGATCTGTA+TGG - Chr5:92771611-92771630 None:intergenic 30.0%
AGCGGATATCATATAAATCA+AGG - Chr5:92771758-92771777 None:intergenic 30.0%
ATTGACAAAATATGCAAGTG+CGG - Chr5:92772361-92772380 None:intergenic 30.0%
CGAAACATTACCAAAAACAA+CGG - Chr5:92770170-92770189 None:intergenic 30.0%
CTTCATAGTCTACATGTATA+CGG + Chr5:92771111-92771130 MsG0580029133.01.T01:intron 30.0%
CTTGATATGTTCATATTGTG+TGG + Chr5:92771854-92771873 MsG0580029133.01.T01:intron 30.0%
GAGAGTTCATTAACAACTTA+AGG + Chr5:92771236-92771255 MsG0580029133.01.T01:intron 30.0%
GTAGTATATGGTACTCAATT+AGG + Chr5:92773671-92773690 MsG0580029133.01.T01:three_prime_UTR 30.0%
GTTTGTTCATATAGGTACTT+GGG + Chr5:92773152-92773171 MsG0580029133.01.T01:intron 30.0%
TATGAACCTTCTACTTTACA+TGG + Chr5:92772215-92772234 MsG0580029133.01.T01:CDS 30.0%
TTCAATAAGGCTTTCTATGT+GGG - Chr5:92773435-92773454 None:intergenic 30.0%
TTCACTTTGCAGTTACTAAT+AGG + Chr5:92771799-92771818 MsG0580029133.01.T01:intron 30.0%
! AAATTGACATCCTTAGTTCT+AGG - Chr5:92772724-92772743 None:intergenic 30.0%
! AATTAGGTAGTGCAGTTTTA+TGG + Chr5:92773687-92773706 MsG0580029133.01.T01:three_prime_UTR 30.0%
! AGTTTGTTCATATAGGTACT+TGG + Chr5:92773151-92773170 MsG0580029133.01.T01:intron 30.0%
! ATCGAAGAGTTTGTTCATAT+AGG + Chr5:92773144-92773163 MsG0580029133.01.T01:intron 30.0%
! CTTTTCTTTCTTTGCTTACA+GGG + Chr5:92771978-92771997 MsG0580029133.01.T01:CDS 30.0%
! GAATTTTGCTTTCATCTGAA+GGG + Chr5:92772081-92772100 MsG0580029133.01.T01:CDS 30.0%
! TCTTTTCTTTCTTTGCTTAC+AGG + Chr5:92771977-92771996 MsG0580029133.01.T01:CDS 30.0%
!! AACTTTTCCTGATCTAGAAT+AGG - Chr5:92773001-92773020 None:intergenic 30.0%
!! ACATAGAAAGCCTTATTGAA+GGG + Chr5:92773435-92773454 MsG0580029133.01.T01:three_prime_UTR 30.0%
!!! ATAAATTGCATTTTGGGGTA+TGG + Chr5:92770533-92770552 MsG0580029133.01.T01:intron 30.0%
!!! CTTATTTGGTGTTTTGATGA+TGG + Chr5:92771895-92771914 MsG0580029133.01.T01:intron 30.0%
!!! TAAATTGCATTTTGGGGTAT+GGG + Chr5:92770534-92770553 MsG0580029133.01.T01:intron 30.0%
!!! TGTCAATCTGACCAATTTTT+TGG + Chr5:92772374-92772393 MsG0580029133.01.T01:CDS 30.0%
!!! TTCTTATTTTTCTCTCTCCT+CGG - Chr5:92770897-92770916 None:intergenic 30.0%
AACCAAGCTTCCATTTGTTT+GGG + Chr5:92772003-92772022 MsG0580029133.01.T01:CDS 35.0%
AATGATCTTCACATCATCTC+TGG - Chr5:92772319-92772338 None:intergenic 35.0%
ACAAAAAAAATTGCAGCAGC+CGG - Chr5:92772868-92772887 None:intergenic 35.0%
ACAATGGAAAAAAGCTAGGT+TGG - Chr5:92772526-92772545 None:intergenic 35.0%
AGTTGGAGATAATCTAAGCA+CGG + Chr5:92770924-92770943 MsG0580029133.01.T01:intron 35.0%
ATAGCTTGATTAAACGACAC+AGG - Chr5:92770205-92770224 None:intergenic 35.0%
ATCACAAGAACCTAGAACTA+AGG + Chr5:92772711-92772730 MsG0580029133.01.T01:intron 35.0%
ATCATTCACTTACTGGAACT+TGG - Chr5:92773504-92773523 None:intergenic 35.0%
ATGATAACACCAGTAACAAC+AGG - Chr5:92770316-92770335 None:intergenic 35.0%
CACTATAAAGTACAACTCCA+AGG - Chr5:92773270-92773289 None:intergenic 35.0%
CAGTAAAACCTGAAATGTCA+TGG - Chr5:92772814-92772833 None:intergenic 35.0%
CGTGTTTGATTGAAATGTGT+CGG + Chr5:92770481-92770500 MsG0580029133.01.T01:intron 35.0%
CTTCAATAAGGCTTTCTATG+TGG - Chr5:92773436-92773455 None:intergenic 35.0%
GAGACAAATTGTTCAGAATC+AGG + Chr5:92773376-92773395 MsG0580029133.01.T01:three_prime_UTR 35.0%
GAGATGATGTGAAGATCATT+TGG + Chr5:92772319-92772338 MsG0580029133.01.T01:CDS 35.0%
GCAAAAACCGCAGTAAAAAA+CGG - Chr5:92770241-92770260 None:intergenic 35.0%
GGATGAGTGAGTAGATATAT+TGG + Chr5:92773042-92773061 MsG0580029133.01.T01:intron 35.0%
GTATGACTATATGAAAAGGG+AGG - Chr5:92772437-92772456 None:intergenic 35.0%
TACAGAGATCATTCACTTAC+TGG - Chr5:92773511-92773530 None:intergenic 35.0%
TATAAAGTGTAGCAGGAAGA+AGG - Chr5:92772260-92772279 None:intergenic 35.0%
TATGAAGCACAGACATTTCT+CGG - Chr5:92771098-92771117 None:intergenic 35.0%
TCAATAAGGCTTTCTATGTG+GGG - Chr5:92773434-92773453 None:intergenic 35.0%
TCATACACCTATTCTAGATC+AGG + Chr5:92772991-92773010 MsG0580029133.01.T01:intron 35.0%
TCCAGTATGTAACTGAACTT+GGG + Chr5:92771196-92771215 MsG0580029133.01.T01:intron 35.0%
TCTTCCATATAAAGTGTAGC+AGG - Chr5:92772267-92772286 None:intergenic 35.0%
TCTTCCTGCTACACTTTATA+TGG + Chr5:92772260-92772279 MsG0580029133.01.T01:CDS 35.0%
TCTTTGTTCCATGACATTTC+AGG + Chr5:92772803-92772822 MsG0580029133.01.T01:intron 35.0%
TGGACAGTCGCTAATATAAT+GGG - Chr5:92773465-92773484 None:intergenic 35.0%
TTCCAGTATGTAACTGAACT+TGG + Chr5:92771195-92771214 MsG0580029133.01.T01:intron 35.0%
TTTCAAACCTCTTGGAAAAG+AGG + Chr5:92772606-92772625 MsG0580029133.01.T01:intron 35.0%
! ATGACTTTTGATAAGTGGCA+AGG - Chr5:92771533-92771552 None:intergenic 35.0%
! ATTGTGTGGTGTTCTGTTTT+TGG + Chr5:92771868-92771887 MsG0580029133.01.T01:intron 35.0%
! GAATCACTTGCTTCTCTTTT+TGG - Chr5:92773296-92773315 None:intergenic 35.0%
! GGAATTTTGCTTTCATCTGA+AGG + Chr5:92772080-92772099 MsG0580029133.01.T01:CDS 35.0%
! TTTTTGTACCTCTGCAACTA+AGG - Chr5:92771404-92771423 None:intergenic 35.0%
!! CACATAGAAAGCCTTATTGA+AGG + Chr5:92773434-92773453 MsG0580029133.01.T01:three_prime_UTR 35.0%
!! CATAGAAAGCCTTATTGAAG+GGG + Chr5:92773436-92773455 MsG0580029133.01.T01:three_prime_UTR 35.0%
!! CTTGTGCTGATTCTAACTAT+TGG + Chr5:92771574-92771593 MsG0580029133.01.T01:intron 35.0%
!! GAAAAGCGTTTCATTTCACA+TGG - Chr5:92771782-92771801 None:intergenic 35.0%
!! GCTCTAAAAACAGTGTTACA+AGG + Chr5:92772059-92772078 MsG0580029133.01.T01:CDS 35.0%
!! GTGTCGTTTAATCAAGCTAT+CGG + Chr5:92770205-92770224 MsG0580029133.01.T01:CDS 35.0%
!! TGAAGTGTTTCCCTTTTAAC+AGG - Chr5:92771487-92771506 None:intergenic 35.0%
!! TGTTTTTATGAGCAATGGAG+TGG + Chr5:92771628-92771647 MsG0580029133.01.T01:intron 35.0%
!! TTCTGTGTTTCCGTTGTTTT+TGG + Chr5:92770157-92770176 MsG0580029133.01.T01:CDS 35.0%
!!! CTGTTTTTGGTGGACTTATT+TGG + Chr5:92771881-92771900 MsG0580029133.01.T01:intron 35.0%
AAAGTCCAAGACCGCAATTT+GGG - Chr5:92771440-92771459 None:intergenic 40.0%
AACCCAAACAAATGGAAGCT+TGG - Chr5:92772008-92772027 None:intergenic 40.0%
AATATGTGTTGCAGCTACAG+CGG + Chr5:92772031-92772050 MsG0580029133.01.T01:CDS 40.0%
ACCTCTGCAACTAAGGTTAA+GGG - Chr5:92771397-92771416 None:intergenic 40.0%
AGAAGGAAAACAACAGCCAT+TGG - Chr5:92772243-92772262 None:intergenic 40.0%
AGATTTCTTTGGCCAAAAGC+CGG + Chr5:92772846-92772865 MsG0580029133.01.T01:intron 40.0%
AGGTACTTGGGAATGCTAAA+GGG + Chr5:92773164-92773183 MsG0580029133.01.T01:intron 40.0%
AGTTTCAGTCACTGGAATGA+TGG + Chr5:92773228-92773247 MsG0580029133.01.T01:CDS 40.0%
ATCATTCCAGTGACTGAAAC+TGG - Chr5:92773229-92773248 None:intergenic 40.0%
ATTCCTCAGTATGCCAACAT+GGG - Chr5:92773539-92773558 None:intergenic 40.0%
CAATTAAAAAGACAGCTGGC+AGG - Chr5:92772501-92772520 None:intergenic 40.0%
CCAGTATGTAACTGAACTTG+GGG + Chr5:92771197-92771216 MsG0580029133.01.T01:intron 40.0%
CTGATTTACAAGGACCCTTT+AGG - Chr5:92770834-92770853 None:intergenic 40.0%
CTGGACAGTCGCTAATATAA+TGG - Chr5:92773466-92773485 None:intergenic 40.0%
GAACCAAGCTTCCATTTGTT+TGG + Chr5:92772002-92772021 MsG0580029133.01.T01:CDS 40.0%
GAGCTAGACTCCTGTTAAAA+GGG + Chr5:92771474-92771493 MsG0580029133.01.T01:intron 40.0%
GGACAGTCGCTAATATAATG+GGG - Chr5:92773464-92773483 None:intergenic 40.0%
GGACCAATTAAAAAGACAGC+TGG - Chr5:92772505-92772524 None:intergenic 40.0%
GGTATTCAGAAGGTAGATCA+AGG + Chr5:92771290-92771309 MsG0580029133.01.T01:intron 40.0%
GTTTCAGTCACTGGAATGAT+GGG + Chr5:92773229-92773248 MsG0580029133.01.T01:CDS 40.0%
TACCTCTGCAACTAAGGTTA+AGG - Chr5:92771398-92771417 None:intergenic 40.0%
TACTGATAGCAACTCTACGT+CGG - Chr5:92772782-92772801 None:intergenic 40.0%
TAGGTACTTGGGAATGCTAA+AGG + Chr5:92773163-92773182 MsG0580029133.01.T01:intron 40.0%
TCATTCCAGTGACTGAAACT+GGG - Chr5:92773228-92773247 None:intergenic 40.0%
TCTACTTTACATGGCTCCAA+TGG + Chr5:92772224-92772243 MsG0580029133.01.T01:CDS 40.0%
TCTCTGTACTATACCCATGT+TGG + Chr5:92773523-92773542 MsG0580029133.01.T01:three_prime_UTR 40.0%
TGAATATACTGCCCTACTAC+AGG - Chr5:92772672-92772691 None:intergenic 40.0%
TGCAATCGCTTGGTTCAAAA+TGG + Chr5:92770072-92770091 MsG0580029133.01.T01:CDS 40.0%
TGTCGGTGATCACATATTGT+CGG + Chr5:92770498-92770517 MsG0580029133.01.T01:intron 40.0%
TTACCAATGTGTGTGAACCT+CGG + Chr5:92770869-92770888 MsG0580029133.01.T01:intron 40.0%
TTGGAGCCATGTAAAGTAGA+AGG - Chr5:92772224-92772243 None:intergenic 40.0%
! CTGCCAGCTGTCTTTTTAAT+TGG + Chr5:92772499-92772518 MsG0580029133.01.T01:intron 40.0%
! GACATCCTTGTTGTGTCTTA+GGG + Chr5:92772179-92772198 MsG0580029133.01.T01:intron 40.0%
! TGACATCCTTGTTGTGTCTT+AGG + Chr5:92772178-92772197 MsG0580029133.01.T01:intron 40.0%
! TGGGGTATGGGAAATGTTTT+TGG + Chr5:92770546-92770565 MsG0580029133.01.T01:intron 40.0%
! TTGGTACCATGAGCTATTTC+TGG - Chr5:92773485-92773504 None:intergenic 40.0%
!! ACTGGTGTTATCATTGCTAG+TGG + Chr5:92770322-92770341 MsG0580029133.01.T01:CDS 40.0%
!! CTGGTGTTATCATTGCTAGT+GGG + Chr5:92770323-92770342 MsG0580029133.01.T01:CDS 40.0%
!! GGTAGTGCAGTTTTATGGTT+TGG + Chr5:92773692-92773711 MsG0580029133.01.T01:three_prime_UTR 40.0%
!! TCGGGATTTTGGTATTCAGA+AGG + Chr5:92771280-92771299 MsG0580029133.01.T01:intron 40.0%
!! TGGTGTTATCATTGCTAGTG+GGG + Chr5:92770324-92770343 MsG0580029133.01.T01:CDS 40.0%
!!! TACTACGCCGTTTTTTACTG+CGG + Chr5:92770231-92770250 MsG0580029133.01.T01:CDS 40.0%
AAATGTGATCGGCATCACGT+TGG + Chr5:92772287-92772306 MsG0580029133.01.T01:CDS 45.0%
AATGGGGAACCCCTTCAATA+AGG - Chr5:92773448-92773467 None:intergenic 45.0%
ACCTCTTGGAAAAGAGGTTC+AGG + Chr5:92772612-92772631 MsG0580029133.01.T01:intron 45.0%
AGAAACCCAGTTTCAGTCAC+TGG + Chr5:92773220-92773239 MsG0580029133.01.T01:CDS 45.0%
ATACCCATGTTGGCATACTG+AGG + Chr5:92773533-92773552 MsG0580029133.01.T01:three_prime_UTR 45.0%
CAAAGTCCAAGACCGCAATT+TGG - Chr5:92771441-92771460 None:intergenic 45.0%
CATGTATACGGTGTAGACGT+TGG + Chr5:92771123-92771142 MsG0580029133.01.T01:intron 45.0%
CATTCCTCAGTATGCCAACA+TGG - Chr5:92773540-92773559 None:intergenic 45.0%
CCCCAAGTTCAGTTACATAC+TGG - Chr5:92771200-92771219 None:intergenic 45.0%
CCTCTGCAACTAAGGTTAAG+GGG - Chr5:92771396-92771415 None:intergenic 45.0%
CCTCTTGGAAAAGAGGTTCA+GGG + Chr5:92772613-92772632 MsG0580029133.01.T01:intron 45.0%
CGAGAACGCATGAATTGCAT+TGG - Chr5:92770100-92770119 None:intergenic 45.0%
CGTCATGATCCTTCAAAGTG+CGG + Chr5:92771342-92771361 MsG0580029133.01.T01:intron 45.0%
CGTTTCATTTCACATGGCAG+CGG - Chr5:92771776-92771795 None:intergenic 45.0%
CTTCTCCCTAAGACACAACA+AGG - Chr5:92772187-92772206 None:intergenic 45.0%
GACTGTCCAGAAATAGCTCA+TGG + Chr5:92773476-92773495 MsG0580029133.01.T01:three_prime_UTR 45.0%
GATCCCTAAAGCCTGTAGTA+GGG + Chr5:92772658-92772677 MsG0580029133.01.T01:intron 45.0%
GCACAGACATTTCTCGGATT+AGG - Chr5:92771092-92771111 None:intergenic 45.0%
GCTCTTGTTCCTGTTGTTAC+TGG + Chr5:92770304-92770323 MsG0580029133.01.T01:CDS 45.0%
GGAGCTAGACTCCTGTTAAA+AGG + Chr5:92771473-92771492 MsG0580029133.01.T01:intron 45.0%
GGTACTTGGGAATGCTAAAG+GGG + Chr5:92773165-92773184 MsG0580029133.01.T01:intron 45.0%
GGTTATTCACTCACAGTCCT+TGG + Chr5:92773250-92773269 MsG0580029133.01.T01:CDS 45.0%
TCGATGTTGTGCCCAAATTG+CGG + Chr5:92771426-92771445 MsG0580029133.01.T01:intron 45.0%
TCTAAGCACGGATACAGACA+CGG + Chr5:92770936-92770955 MsG0580029133.01.T01:intron 45.0%
TGACGTTGAAGAGAGAAGCT+TGG + Chr5:92770269-92770288 MsG0580029133.01.T01:CDS 45.0%
! AAAAGGGAGGCATACCTGAA+GGG - Chr5:92772424-92772443 None:intergenic 45.0%
!! TGTTGGTGTCGTGTCAGTAT+CGG + Chr5:92771037-92771056 MsG0580029133.01.T01:intron 45.0%
!!! GTGTGGTGTTCTGTTTTTGG+TGG + Chr5:92771871-92771890 MsG0580029133.01.T01:intron 45.0%
ACTGCCCTACTACAGGCTTT+AGG - Chr5:92772665-92772684 None:intergenic 50.0%
CAAGTGCGGAATTGAACAGC+AGG - Chr5:92772347-92772366 None:intergenic 50.0%
CCCCTTAACCTTAGTTGCAG+AGG + Chr5:92771393-92771412 MsG0580029133.01.T01:intron 50.0%
CTGCCCTACTACAGGCTTTA+GGG - Chr5:92772664-92772683 None:intergenic 50.0%
GATCCGAGGTTCACACACAT+TGG - Chr5:92770875-92770894 None:intergenic 50.0%
GCAATTTGGGCACAACATCG+AGG - Chr5:92771427-92771446 None:intergenic 50.0%
GGATCCCTAAAGCCTGTAGT+AGG + Chr5:92772657-92772676 MsG0580029133.01.T01:intron 50.0%
TGCAGTTCTCCGCACTTTGA+AGG - Chr5:92771354-92771373 None:intergenic 50.0%
TTGTGCCCAAATTGCGGTCT+TGG + Chr5:92771432-92771451 MsG0580029133.01.T01:intron 50.0%
! CCCTGAACCTCTTTTCCAAG+AGG - Chr5:92772616-92772635 None:intergenic 50.0%
! GAAAAGGGAGGCATACCTGA+AGG - Chr5:92772425-92772444 None:intergenic 50.0%
! TTCTCGGATTAGGCGTGTTC+CGG - Chr5:92771082-92771101 None:intergenic 50.0%
!! AAATTGCAGCAGCCGGCTTT+TGG - Chr5:92772861-92772880 None:intergenic 50.0%
!! GTTGGTGTCGTGTCAGTATC+GGG + Chr5:92771038-92771057 MsG0580029133.01.T01:intron 50.0%
ACGGATACAGACACGGACAC+TGG + Chr5:92770943-92770962 MsG0580029133.01.T01:intron 55.0%
GATTAGGCGTGTTCCGGTGT+CGG - Chr5:92771076-92771095 None:intergenic 55.0%
TACCAGTGCTCTCACCCTTC+AGG + Chr5:92772407-92772426 MsG0580029133.01.T01:CDS 55.0%
TTTCTCTCTCCTCGGATCCG+AGG - Chr5:92770889-92770908 None:intergenic 55.0%
! TACCTGAAGGGTGAGAGCAC+TGG - Chr5:92772412-92772431 None:intergenic 55.0%
CACGGACACTGGACACTGCA+TGG + Chr5:92770954-92770973 MsG0580029133.01.T01:intron 60.0%
GTGTGTGAACCTCGGATCCG+AGG + Chr5:92770877-92770896 MsG0580029133.01.T01:intron 60.0%
GCACGACACGTGTCCGACAC+CGG + Chr5:92771060-92771079 MsG0580029133.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 92770067 92773776 92770067 ID=MsG0580029133.01;Name=MsG0580029133.01
Chr5 mRNA 92770067 92773776 92770067 ID=MsG0580029133.01.T01;Parent=MsG0580029133.01;Name=MsG0580029133.01.T01;_AED=0.36;_eAED=0.41;_QI=0|0.5|0.4|1|0.75|0.4|5|464|286
Chr5 exon 92770067 92770345 92770067 ID=MsG0580029133.01.T01:exon:26506;Parent=MsG0580029133.01.T01
Chr5 exon 92771054 92771103 92771054 ID=MsG0580029133.01.T01:exon:26507;Parent=MsG0580029133.01.T01
Chr5 exon 92771947 92772102 92771947 ID=MsG0580029133.01.T01:exon:26508;Parent=MsG0580029133.01.T01
Chr5 exon 92772200 92772428 92772200 ID=MsG0580029133.01.T01:exon:26509;Parent=MsG0580029133.01.T01
Chr5 exon 92773166 92773776 92773166 ID=MsG0580029133.01.T01:exon:26510;Parent=MsG0580029133.01.T01
Chr5 CDS 92770067 92770345 92770067 ID=MsG0580029133.01.T01:cds;Parent=MsG0580029133.01.T01
Chr5 CDS 92771054 92771103 92771054 ID=MsG0580029133.01.T01:cds;Parent=MsG0580029133.01.T01
Chr5 CDS 92771947 92772102 92771947 ID=MsG0580029133.01.T01:cds;Parent=MsG0580029133.01.T01
Chr5 CDS 92772200 92772428 92772200 ID=MsG0580029133.01.T01:cds;Parent=MsG0580029133.01.T01
Chr5 CDS 92773166 92773312 92773166 ID=MsG0580029133.01.T01:cds;Parent=MsG0580029133.01.T01
Chr5 three_prime_UTR 92773313 92773776 92773313 ID=MsG0580029133.01.T01:three_prime_utr;Parent=MsG0580029133.01.T01
Gene Sequence

>MsG0580029133.01.T01

TACGTTGCAATCGCTTGGTTCAAAATGGTTCCAATGCAATTCATGCGTTCTCGTCTTCAATTCTTTAAGATCGCTACTCTAAGTTTTATTTTCTGTGTTTCCGTTGTTTTTGGTAATGTTTCGTTACGGTATCTTCCTGTGTCGTTTAATCAAGCTATCGGTGCTACTACGCCGTTTTTTACTGCGGTTTTTGCTTATGCTATGACGTTGAAGAGAGAAGCTTGGCTTACTTATCTTGCTCTTGTTCCTGTTGTTACTGGTGTTATCATTGCTAGTGGGTATCGGGCACGACACGTGTCCGACACCGGAACACGCCTAATCCGAGAAATAATCTTTATGGATTCTGATACATTTGCTATTCTTTTCTTTCTTTGCTTACAGGGTGAACCAAGCTTCCATTTGTTTGGGTTCATAATATGTGTTGCAGCTACAGCGGCACGAGCTCTAAAAACAGTGTTACAAGGAATTTTGCTTTCATCTGAAGGGGAGAAGCTGAATTCTATGAACCTTCTACTTTACATGGCTCCAATGGCTGTTGTTTTCCTTCTTCCTGCTACACTTTATATGGAAGAAAATGTGATCGGCATCACGTTGGCTCTTGCCAGAGATGATGTGAAGATCATTTGGTACCTGCTGTTCAATTCCGCACTTGCATATTTTGTCAATCTGACCAATTTTTTGGTCACAAAACATACCAGTGCTCTCACCCTTCAGGTACTTGGGAATGCTAAAGGGGCTGTAGCAGTTGTAGTTTCAATTCTAATATTTAGAAACCCAGTTTCAGTCACTGGAATGATGGGTTATTCACTCACAGTCCTTGGAGTTGTACTTTATAGTGAAGCCAAAAAGAGAAGCAAGTGA
Protein sequence

>MsG0580029133.01.T01

YVAIAWFKMVPMQFMRSRLQFFKIATLSFIFCVSVVFGNVSLRYLPVSFNQAIGATTPFFTAVFAYAMTLKREAWLTYLALVPVVTGVIIASGYRARHVSDTGTRLIREIIFMDSDTFAILFFLCLQGEPSFHLFGFIICVAATAARALKTVLQGILLSSEGEKLNSMNLLLYMAPMAVVFLLPATLYMEENVIGITLALARDDVKIIWYLLFNSALAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFRNPVSVTGMMGYSLTVLGVVLYSEAKKRSK*