AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030621.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030621.01.T01 MTR_6g007807 99.376 641 4 0 1 641 26 666 0.0 1311
MsG0680030621.01.T01 MTR_4g006010 70.455 660 172 8 1 641 44 699 0.0 927
MsG0680030621.01.T01 MTR_3g109040 69.147 645 182 7 10 641 36 676 0.0 907
MsG0680030621.01.T01 MTR_3g109040 69.147 645 182 7 10 641 47 687 0.0 907
MsG0680030621.01.T01 MTR_3g103500 66.210 657 188 9 10 641 51 698 0.0 847
MsG0680030621.01.T01 MTR_8g012320 64.992 637 216 4 9 641 69 702 0.0 829
MsG0680030621.01.T01 MTR_3g103500 63.355 453 148 6 10 444 51 503 0.0 583
MsG0680030621.01.T01 MTR_1g061270 42.264 530 269 6 114 637 18 516 2.61e-149 442
MsG0680030621.01.T01 MTR_1g061510 42.075 530 271 4 114 637 18 517 6.22e-148 439
MsG0680030621.01.T01 MTR_1g061280 41.011 534 279 6 114 641 18 521 1.80e-145 432
MsG0680030621.01.T01 MTR_7g103590 41.431 531 275 4 113 637 26 526 3.86e-145 432
MsG0680030621.01.T01 MTR_1g061340 40.189 530 281 3 114 637 18 517 6.23e-145 431
MsG0680030621.01.T01 MTR_4g055520 41.651 545 273 11 113 640 26 542 1.40e-142 426
MsG0680030621.01.T01 MTR_1g492700 45.263 475 228 7 164 637 81 524 1.42e-140 420
MsG0680030621.01.T01 MTR_7g101950 40.789 532 280 6 115 640 25 527 4.21e-139 416
MsG0680030621.01.T01 MTR_4g055520 45.538 437 226 4 113 540 26 459 5.57e-139 415
MsG0680030621.01.T01 MTR_4g055520 43.791 459 224 8 191 640 29 462 3.50e-131 394
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030621.01.T01 AT3G28180 74.885 653 132 6 10 641 32 673 0.0 999
MsG0680030621.01.T01 AT2G24630 70.245 652 175 8 6 641 42 690 0.0 910
MsG0680030621.01.T01 AT2G24630 70.245 652 175 8 6 641 42 690 0.0 910
MsG0680030621.01.T01 AT4G31590 69.444 648 182 6 9 641 46 692 0.0 897
MsG0680030621.01.T01 AT3G07330 62.090 641 222 5 12 641 52 682 0.0 819
MsG0680030621.01.T01 AT3G07330 62.090 641 222 5 12 641 52 682 0.0 819
MsG0680030621.01.T01 AT4G07960 64.526 654 206 7 8 640 50 698 0.0 812
MsG0680030621.01.T01 AT4G07960 64.526 654 206 7 8 640 50 698 0.0 812
MsG0680030621.01.T01 AT5G22740 40.968 537 277 6 113 640 27 532 1.53e-144 431
MsG0680030621.01.T01 AT5G03760 41.604 536 273 7 113 640 27 530 5.89e-143 426
MsG0680030621.01.T01 AT1G23480 41.604 536 272 7 114 640 50 553 3.68e-139 417
MsG0680030621.01.T01 AT1G23480 41.604 536 272 7 114 640 50 553 3.68e-139 417
MsG0680030621.01.T01 AT1G23480 44.835 484 232 7 156 637 28 478 1.85e-138 413
MsG0680030621.01.T01 AT4G13410 39.245 530 281 4 114 637 42 536 1.23e-136 410
MsG0680030621.01.T01 AT5G16190 40.113 531 281 4 113 637 4 503 1.86e-136 409
MsG0680030621.01.T01 AT2G35650 44.977 438 235 2 115 546 51 488 2.93e-134 405
MsG0680030621.01.T01 AT1G24070 39.734 526 280 6 118 637 57 551 3.25e-134 405
MsG0680030621.01.T01 AT5G16190 43.197 463 231 3 176 637 11 442 1.37e-133 399
MsG0680030621.01.T01 AT5G16190 44.545 440 238 2 113 546 4 443 1.06e-132 397
MsG0680030621.01.T01 AT2G35650 49.340 379 190 2 170 546 38 416 3.34e-132 397
MsG0680030621.01.T01 AT2G35650 49.340 379 190 2 170 546 38 416 3.34e-132 397
MsG0680030621.01.T01 AT5G16190 38.121 564 279 6 113 637 4 536 6.45e-130 393
MsG0680030621.01.T01 AT3G56000 41.328 467 238 5 178 640 92 526 2.25e-123 376
MsG0680030621.01.T01 AT4G16590 36.654 532 262 8 114 637 55 519 2.42e-114 352
MsG0680030621.01.T01 AT1G23480 42.959 419 206 5 224 640 21 408 2.95e-111 340
MsG0680030621.01.T01 AT4G13410 39.364 409 212 2 230 637 2 375 3.83e-106 326
MsG0680030621.01.T01 AT2G35650 46.951 328 172 2 221 546 3 330 4.63e-106 327
MsG0680030621.01.T01 AT4G13410 47.205 322 165 2 114 430 42 363 1.15e-100 313
MsG0680030621.01.T01 AT1G24070 47.799 318 161 2 118 430 57 374 1.75e-100 313

Find 118 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAAGTTTGTGAAGTTTA+AGG 0.118814 6:-6190455 None:intergenic
AAGTTCAATGCAATGGTTTC+TGG 0.121832 6:+6194139 MsG0680030621.01.T01:CDS
TATAACCTTGTTGTGTTCTT+AGG 0.143034 6:-6190567 None:intergenic
TTTGTTCTTGATTCAATCTT+TGG 0.162323 6:+6190791 MsG0680030621.01.T01:CDS
TTCTTTGTCTTGGATGCTTT+TGG 0.162589 6:+6190823 MsG0680030621.01.T01:CDS
GGAGAGTTATATAATTTATT+TGG 0.212266 6:+6194742 MsG0680030621.01.T01:three_prime_UTR
ACAAGGAAAGGGACTGATTT+TGG 0.216482 6:-6194079 None:intergenic
TTGATAAGCATCTGTAAATT+AGG 0.220610 6:-6191724 None:intergenic
AGGTTTGGCATTCCTTGTTA+TGG 0.243994 6:+6194471 MsG0680030621.01.T01:CDS
AAATTAGAATCACCAATTAT+TGG 0.253424 6:-6194560 None:intergenic
TAGTTCTTTCAACTGATATA+TGG 0.264534 6:-6194588 None:intergenic
TGAACTAGTATTCTGTCTTT+TGG 0.274513 6:-6191679 None:intergenic
CAACAACATCGTTGGCATTC+TGG 0.276703 6:+6192798 MsG0680030621.01.T01:CDS
AGAATTTCATTATCTGATAT+TGG 0.285395 6:+6190534 MsG0680030621.01.T01:CDS
GGCATTCCTTGTTATGGGTT+TGG 0.289107 6:+6194477 MsG0680030621.01.T01:CDS
AAATTACATTCTTGTCTCTA+TGG 0.290216 6:-6194679 None:intergenic
GGTTTGGCATTCCTTGTTAT+GGG 0.296512 6:+6194472 MsG0680030621.01.T01:CDS
GAATAGAGTGAATGAGTAGA+AGG 0.304418 6:-6193951 None:intergenic
AGCTGGTGTTTGGAGGATTA+AGG 0.304743 6:+6192623 MsG0680030621.01.T01:CDS
TTTCTAGACTTCAAATTTGT+TGG 0.306232 6:+6194721 MsG0680030621.01.T01:three_prime_UTR
AGAAGATTATGTTGCTCCTT+TGG 0.310727 6:+6190740 MsG0680030621.01.T01:CDS
TGTACTTTCAATTGTTGCTT+TGG 0.311913 6:+6190611 MsG0680030621.01.T01:CDS
AAAGAACTTTAACATCATTA+AGG 0.316833 6:-6192740 None:intergenic
TTTGTAAGCTTCATAGGATT+CGG 0.325734 6:-6192772 None:intergenic
TGTTTGGAGGATTAAGGCTT+TGG 0.326554 6:+6192629 MsG0680030621.01.T01:CDS
TCAAAGATGAGGTTTCTTCT+TGG 0.332162 6:+6191743 MsG0680030621.01.T01:CDS
GAATCGGGTTTGGAGTTATT+AGG 0.334902 6:+6194301 MsG0680030621.01.T01:CDS
GGCTATTTCTTGAATTTCTT+CGG 0.340859 6:+6192588 MsG0680030621.01.T01:CDS
TGCATGAGGTAATCAGGATT+TGG 0.350956 6:-6191904 None:intergenic
CAAAGGGGTAGTTCTGATTC+AGG 0.359856 6:-6194004 None:intergenic
TTGAATTTCTTCGGATTCAA+TGG 0.361556 6:+6192597 MsG0680030621.01.T01:CDS
ATGGTTTGCATGAGGTAATC+AGG 0.371179 6:-6191910 None:intergenic
GTGCTGCTTGTCAACTTGAT+TGG 0.371683 6:+6191656 MsG0680030621.01.T01:CDS
TTCAGGTATGAACATTGTTA+AGG 0.381616 6:-6193987 None:intergenic
ATTAAGGCTTTGGAGGAATC+AGG 0.382115 6:+6192639 MsG0680030621.01.T01:CDS
TTGTAAGCTTCATAGGATTC+GGG 0.384558 6:-6192771 None:intergenic
GATCGGCTTGTTCTTTGTCT+TGG 0.385003 6:+6190813 MsG0680030621.01.T01:CDS
CAAGTACAAAACAGTTTACA+TGG 0.399324 6:+6190424 MsG0680030621.01.T01:CDS
TCAATGGAACAGCTGGTGTT+TGG 0.399437 6:+6192613 MsG0680030621.01.T01:CDS
AACTAGGAAGTGCTTATGAA+TGG 0.406621 6:+6194170 MsG0680030621.01.T01:CDS
GCTGTTAGAGCTCATTTGAA+TGG 0.419519 6:+6192702 MsG0680030621.01.T01:CDS
CTGAATCAGAACTACCCCTT+TGG 0.424047 6:+6194005 MsG0680030621.01.T01:CDS
AAGGTTTATTCACAATCAAT+TGG 0.427259 6:+6191634 MsG0680030621.01.T01:intron
TTGGAGGATTAAGGCTTTGG+AGG 0.432850 6:+6192632 MsG0680030621.01.T01:CDS
AGACATAGATTGATCAGAAC+TGG 0.436769 6:+6191793 MsG0680030621.01.T01:CDS
AAGACACTCAGAATCGGGTT+TGG 0.439191 6:+6194291 MsG0680030621.01.T01:CDS
TTTGCATGTGATTCAACCTT+GGG 0.444305 6:+6190668 MsG0680030621.01.T01:CDS
ATCAGAACTGGTTATAAAGC+AGG 0.449774 6:+6191805 MsG0680030621.01.T01:CDS
TTCGGATTCAATGGAACAGC+TGG 0.450845 6:+6192606 MsG0680030621.01.T01:CDS
TGTATAATCATAAGATGATA+AGG 0.452259 6:+6194654 MsG0680030621.01.T01:three_prime_UTR
CATAGAAGACACTCAGAATC+GGG 0.454828 6:+6194286 MsG0680030621.01.T01:CDS
AAAAGTTGATTTGAGACCAT+TGG 0.458146 6:-6190496 None:intergenic
GTTATGGGTTTGGACTTGAT+TGG 0.459333 6:+6194487 MsG0680030621.01.T01:CDS
TCAGGTATGAACATTGTTAA+GGG 0.460385 6:-6193986 None:intergenic
GCAAACCATTCCACATTTCA+AGG 0.461691 6:+6191924 MsG0680030621.01.T01:CDS
GGATCCTTTGAGCTTTCCTA+TGG 0.463637 6:+6190899 MsG0680030621.01.T01:CDS
GTTTCTTCTTGGAAAGAGAA+AGG 0.463915 6:+6191754 MsG0680030621.01.T01:CDS
CAGAATACTAGTTCAAGTAT+TGG 0.468734 6:+6191687 MsG0680030621.01.T01:CDS
GCATAGAAGACACTCAGAAT+CGG 0.469925 6:+6194285 MsG0680030621.01.T01:CDS
GACATAACAGATTACCCAAA+GGG 0.470550 6:-6194020 None:intergenic
ACTAGGAAGTGCTTATGAAT+GGG 0.484196 6:+6194171 MsG0680030621.01.T01:CDS
TTAGAGCTCATTTGAATGGA+TGG 0.488550 6:+6192706 MsG0680030621.01.T01:CDS
TGAATCAGAACTACCCCTTT+GGG 0.489082 6:+6194006 MsG0680030621.01.T01:CDS
TCTTGATTCAATCTTTGGAT+CGG 0.494682 6:+6190796 MsG0680030621.01.T01:CDS
TGGGTTGTGACAAAGAAAAC+AGG 0.496608 6:+6194190 MsG0680030621.01.T01:CDS
ATGGAACAGCTGGTGTTTGG+AGG 0.497020 6:+6192616 MsG0680030621.01.T01:CDS
GCTTGAACTAGTCCCAAGTC+AGG 0.499333 6:-6192471 None:intergenic
AGAAGATAAGGGACAAGGAA+AGG 0.499401 6:-6194091 None:intergenic
GAGGTTGAACAACAAGTGAA+TGG 0.500232 6:+6192567 MsG0680030621.01.T01:CDS
TTTCTTCTTGGAAAGAGAAA+GGG 0.503845 6:+6191755 MsG0680030621.01.T01:CDS
GTTGAAAGAACTATATCAGC+TGG 0.504119 6:+6194598 MsG0680030621.01.T01:three_prime_UTR
TCTGAGTGTCTTCTATGCAA+TGG 0.510526 6:-6194280 None:intergenic
TTTATAGGGAAAACCTGACT+TGG 0.513915 6:+6192458 MsG0680030621.01.T01:intron
AGGTTAAGAAGTTGAAGCCT+AGG 0.514390 6:+6190850 MsG0680030621.01.T01:CDS
TGTTCTCGAAAAGAAGATAA+GGG 0.514946 6:-6194102 None:intergenic
AAAAGATTCTTAACTTCCCA+AGG 0.515319 6:-6190684 None:intergenic
GTGTTCTCGAAAAGAAGATA+AGG 0.521135 6:-6194103 None:intergenic
CTTTGGAGGAATCAGGCGGT+TGG 0.522058 6:+6192646 MsG0680030621.01.T01:CDS
AATAGAGTGAATGAGTAGAA+GGG 0.524542 6:-6193950 None:intergenic
GGAGGAATCAGGCGGTTGGT+TGG 0.525711 6:+6192650 MsG0680030621.01.T01:CDS
AATCAGGCGGTTGGTTGGAA+AGG 0.526492 6:+6192655 MsG0680030621.01.T01:CDS
GAAGATAAGGGACAAGGAAA+GGG 0.526734 6:-6194090 None:intergenic
TAAGCATCATCATCAATCCT+AGG 0.529060 6:-6190867 None:intergenic
ACCTTGGCAGTTAATACAGC+AGG 0.530600 6:-6192849 None:intergenic
ATAATGCTTACCTTGAAATG+TGG 0.531008 6:-6191934 None:intergenic
GGTTACAAAGTTCAATGCAA+TGG 0.535120 6:+6194132 MsG0680030621.01.T01:CDS
ATTTGCATGTGATTCAACCT+TGG 0.549569 6:+6190667 MsG0680030621.01.T01:CDS
TTTAAGAACGACATGACGAT+AGG 0.555206 6:-6194043 None:intergenic
GGAATCTGAACAAGAACCAT+AGG 0.556670 6:-6190915 None:intergenic
GTTTCTGGACTATTTCAACT+AGG 0.563242 6:+6194154 MsG0680030621.01.T01:CDS
TTATAGGGAAAACCTGACTT+GGG 0.571386 6:+6192459 MsG0680030621.01.T01:intron
AAGGACAACAGTTGAGGACA+TGG 0.574551 6:+6192674 MsG0680030621.01.T01:CDS
ACAGATGCTTATCAAAGATG+AGG 0.575011 6:+6191732 MsG0680030621.01.T01:CDS
CGAAAAGAAGATAAGGGACA+AGG 0.577643 6:-6194096 None:intergenic
CAAAATTCAGAAAACAGAAG+TGG 0.579115 6:+6194324 MsG0680030621.01.T01:CDS
ACCTCTCTTTCATTACACAT+TGG 0.581973 6:-6190936 None:intergenic
TTCTTCTTGGAAAGAGAAAG+GGG 0.584512 6:+6191756 MsG0680030621.01.T01:CDS
TCCAATGTGTAATGAAAGAG+AGG 0.588056 6:+6190935 MsG0680030621.01.T01:CDS
TCCTGCTGTATTAACTGCCA+AGG 0.589090 6:+6192848 MsG0680030621.01.T01:CDS
GCTTACCTTGAAATGTGGAA+TGG 0.591995 6:-6191929 None:intergenic
TTTGACACAAACAAAACCAA+AGG 0.592147 6:-6190756 None:intergenic
GTTGGAAAGGACAACAGTTG+AGG 0.595256 6:+6192668 MsG0680030621.01.T01:CDS
TGGGACTAGTTCAAGCAAGA+TGG 0.596166 6:+6192478 MsG0680030621.01.T01:CDS
GCAGATATCAGTATGGAAGA+AGG 0.599135 6:+6193883 MsG0680030621.01.T01:intron
TTAAGAACGACATGACGATA+GGG 0.607062 6:-6194042 None:intergenic
TCAGAACTGGTTATAAAGCA+GGG 0.612201 6:+6191806 MsG0680030621.01.T01:CDS
TGATGATGCTTATGATGTTG+AGG 0.612756 6:+6190878 MsG0680030621.01.T01:CDS
AACTTCTGACATGTTTGACA+TGG 0.637406 6:+6190469 MsG0680030621.01.T01:CDS
TGTTTGACATGGTTGACCAA+TGG 0.637450 6:+6190480 MsG0680030621.01.T01:CDS
TCAAGTCCAAACCCATAACA+AGG 0.641675 6:-6194483 None:intergenic
AGAACCATAGGAAAGCTCAA+AGG 0.660564 6:-6190903 None:intergenic
AAGATGAGAATCTTCTAACA+AGG 0.662993 6:+6192514 MsG0680030621.01.T01:CDS
AAGTACAAAACAGTTTACAT+GGG 0.663618 6:+6190425 MsG0680030621.01.T01:CDS
GGACATAACAGATTACCCAA+AGG 0.694073 6:-6194021 None:intergenic
AATGTGGAATGGTTTGCATG+AGG 0.700691 6:-6191918 None:intergenic
AAGGCTTTGGAGGAATCAGG+CGG 0.701186 6:+6192642 MsG0680030621.01.T01:CDS
ACATAACAGATTACCCAAAG+GGG 0.714598 6:-6194019 None:intergenic
AAAATCCTAAGAACACAACA+AGG 0.736658 6:+6190562 MsG0680030621.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATATAATATTGGAAAA+TGG + Chr6:6192017-6192036 MsG0680030621.01.T01:intron 15.0%
!! ATAAGAAGAACAAAAATATT+AGG - Chr6:6193913-6193932 None:intergenic 15.0%
!! TACCAAAAATAATGTAAAAT+TGG - Chr6:6191079-6191098 None:intergenic 15.0%
!!! AATTTTCAAAACATTGTTTT+CGG - Chr6:6192303-6192322 None:intergenic 15.0%
!!! ATAATGGATTAAATTATGAT+TGG + Chr6:6191365-6191384 MsG0680030621.01.T01:intron 15.0%
!!! ATTTGGTTTTTTTATTTTTG+TGG + Chr6:6194759-6194778 MsG0680030621.01.T01:three_prime_UTR 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - Chr6:6193248-6193267 None:intergenic 15.0%
!!! TTCCAATTTTACATTATTTT+TGG + Chr6:6191074-6191093 MsG0680030621.01.T01:intron 15.0%
!!! TTGTTTTTTATACCAATAAT+TGG + Chr6:6194548-6194567 MsG0680030621.01.T01:three_prime_UTR 15.0%
!! AAACTAACCAATAGTTAATA+AGG + Chr6:6193262-6193281 MsG0680030621.01.T01:intron 20.0%
!! AAAGAACTTTAACATCATTA+AGG - Chr6:6192743-6192762 None:intergenic 20.0%
!! AAATTAGAATCACCAATTAT+TGG - Chr6:6194563-6194582 None:intergenic 20.0%
!! AAATTTCAGTTGCAAAAATT+TGG - Chr6:6193808-6193827 None:intergenic 20.0%
!! AATAGTTAATAAGGATACTT+TGG + Chr6:6193271-6193290 MsG0680030621.01.T01:intron 20.0%
!! AATGTAAAATTGGAAAATCA+TGG - Chr6:6191069-6191088 None:intergenic 20.0%
!! AATTTCAGTTGCAAAAATTT+GGG - Chr6:6193807-6193826 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - Chr6:6193185-6193204 None:intergenic 20.0%
!! AGAATTTCATTATCTGATAT+TGG + Chr6:6190534-6190553 MsG0680030621.01.T01:CDS 20.0%
!! ATTAAATTATGATTGGAACT+TGG + Chr6:6191372-6191391 MsG0680030621.01.T01:intron 20.0%
!! ATTCAATTATGATTGCAATT+TGG + Chr6:6191030-6191049 MsG0680030621.01.T01:intron 20.0%
!! GGAGAGTTATATAATTTATT+TGG + Chr6:6194742-6194761 MsG0680030621.01.T01:three_prime_UTR 20.0%
!! TAAGACAAAAAATGGAAAAA+TGG - Chr6:6191421-6191440 None:intergenic 20.0%
!! TAATTAAGCACTTATAGTAT+AGG - Chr6:6193708-6193727 None:intergenic 20.0%
!! TGTATAATCATAAGATGATA+AGG + Chr6:6194654-6194673 MsG0680030621.01.T01:three_prime_UTR 20.0%
!! TTGATTCTAATCTATGATTT+AGG + Chr6:6190975-6190994 MsG0680030621.01.T01:intron 20.0%
!!! AAAGTATCCTTATTAACTAT+TGG - Chr6:6193272-6193291 None:intergenic 20.0%
!!! AATTTTTCATTGTCCTTATT+TGG - Chr6:6192167-6192186 None:intergenic 20.0%
!!! CTACTTTTTATAAACTATCT+TGG + Chr6:6193500-6193519 MsG0680030621.01.T01:intron 20.0%
!!! TAATACATATTTTATCTGTG+AGG + Chr6:6192382-6192401 MsG0680030621.01.T01:intron 20.0%
!!! TATTTTTGTTCTTCTTATTG+AGG + Chr6:6193915-6193934 MsG0680030621.01.T01:CDS 20.0%
!!! TCATTTTGAAACAGTTTTTT+TGG - Chr6:6193146-6193165 None:intergenic 20.0%
! AAATTACATTCTTGTCTCTA+TGG - Chr6:6194682-6194701 None:intergenic 25.0%
! AAGGTTTATTCACAATCAAT+TGG + Chr6:6191634-6191653 MsG0680030621.01.T01:intron 25.0%
! AAGTACAAAACAGTTTACAT+GGG + Chr6:6190425-6190444 MsG0680030621.01.T01:CDS 25.0%
! AATAAGAATTAGCAATACCT+TGG - Chr6:6192868-6192887 None:intergenic 25.0%
! AGAAGAAAAACAAACTCTAT+AGG + Chr6:6194356-6194375 MsG0680030621.01.T01:CDS 25.0%
! ATTTCAGTTGCAAAAATTTG+GGG - Chr6:6193806-6193825 None:intergenic 25.0%
! CAAACATCTTATGTGTATAT+TGG + Chr6:6191007-6191026 MsG0680030621.01.T01:intron 25.0%
! TAAGCATTATAAATAAGCCA+AGG + Chr6:6191947-6191966 MsG0680030621.01.T01:intron 25.0%
! TAGTTCTTTCAACTGATATA+TGG - Chr6:6194591-6194610 None:intergenic 25.0%
! TGGAAAATCATGTATGAATT+AGG - Chr6:6191401-6191420 None:intergenic 25.0%
! TGTCAAAAACTATGAATTTG+TGG + Chr6:6191858-6191877 MsG0680030621.01.T01:CDS 25.0%
! TTCAACTTTATAGTGTAACA+TGG + Chr6:6192893-6192912 MsG0680030621.01.T01:intron 25.0%
! TTGATAAGCATCTGTAAATT+AGG - Chr6:6191727-6191746 None:intergenic 25.0%
! TTTCTAGACTTCAAATTTGT+TGG + Chr6:6194721-6194740 MsG0680030621.01.T01:three_prime_UTR 25.0%
! TTTGTTCTTGATTCAATCTT+TGG + Chr6:6190791-6190810 MsG0680030621.01.T01:CDS 25.0%
!! AAGTTAAGAATCTTTTGCAA+TGG + Chr6:6190691-6190710 MsG0680030621.01.T01:CDS 25.0%
!! ATGTAAGTAAATTCTAGCTA+AGG + Chr6:6191170-6191189 MsG0680030621.01.T01:intron 25.0%
!! GTTTTTCACTTATGTAAAGT+AGG + Chr6:6194781-6194800 MsG0680030621.01.T01:three_prime_UTR 25.0%
!! TATGAACATAGTTTGACTTT+AGG + Chr6:6193397-6193416 MsG0680030621.01.T01:intron 25.0%
!!! ATTTTCGTGACTTTGTTTAT+AGG + Chr6:6192443-6192462 MsG0680030621.01.T01:intron 25.0%
!!! TCATTGCTCATTTTAATCAA+TGG + Chr6:6190643-6190662 MsG0680030621.01.T01:CDS 25.0%
!!! TCTCAAATCAACTTTTTCAT+TGG + Chr6:6190503-6190522 MsG0680030621.01.T01:CDS 25.0%
!!! TCTTTTGCAATGGTTTTATA+TGG + Chr6:6190701-6190720 MsG0680030621.01.T01:CDS 25.0%
!!! TTCTATTTCTTGCTTTTTCA+AGG + Chr6:6194451-6194470 MsG0680030621.01.T01:CDS 25.0%
!!! TTGTTTTTTGTAAGCTTCAT+AGG - Chr6:6192781-6192800 None:intergenic 25.0%
!!! TTTGTTTTGTTTTTGAGTGA+AGG + Chr6:6191615-6191634 MsG0680030621.01.T01:intron 25.0%
!!! TTTTCGTGACTTTGTTTATA+GGG + Chr6:6192444-6192463 MsG0680030621.01.T01:intron 25.0%
AAAAGATTCTTAACTTCCCA+AGG - Chr6:6190687-6190706 None:intergenic 30.0%
AAAATCCTAAGAACACAACA+AGG + Chr6:6190562-6190581 MsG0680030621.01.T01:CDS 30.0%
AACAAGTTAGCTGAAAAACA+AGG + Chr6:6194512-6194531 MsG0680030621.01.T01:exon 30.0%
AAGATGAGAATCTTCTAACA+AGG + Chr6:6192514-6192533 MsG0680030621.01.T01:CDS 30.0%
AATAGAGTGAATGAGTAGAA+GGG - Chr6:6193953-6193972 None:intergenic 30.0%
ACAAAAAACAACAACATCGT+TGG + Chr6:6192790-6192809 MsG0680030621.01.T01:CDS 30.0%
ATAATGCTTACCTTGAAATG+TGG - Chr6:6191937-6191956 None:intergenic 30.0%
ATGTATTACATACAACAGTG+AGG - Chr6:6192370-6192389 None:intergenic 30.0%
CAAAATTCAGAAAACAGAAG+TGG + Chr6:6194324-6194343 MsG0680030621.01.T01:CDS 30.0%
CAAGTACAAAACAGTTTACA+TGG + Chr6:6190424-6190443 MsG0680030621.01.T01:CDS 30.0%
CAGAATACTAGTTCAAGTAT+TGG + Chr6:6191687-6191706 MsG0680030621.01.T01:CDS 30.0%
CCATGAATATTGAATCAATC+AGG - Chr6:6191530-6191549 None:intergenic 30.0%
CTTGTACAAATTTCTAAGCA+TGG - Chr6:6193835-6193854 None:intergenic 30.0%
GCAATTAAAAAGTCTGATCA+AGG + Chr6:6191281-6191300 MsG0680030621.01.T01:intron 30.0%
GCTAGAATTTACTTACATAC+CGG - Chr6:6191168-6191187 None:intergenic 30.0%
TATTGGTATAAGAACTTGTG+AGG - Chr6:6193599-6193618 None:intergenic 30.0%
TCAGAAGTTTGTGAAGTTTA+AGG - Chr6:6190458-6190477 None:intergenic 30.0%
TCAGGTATGAACATTGTTAA+GGG - Chr6:6193989-6194008 None:intergenic 30.0%
TCTTGATTCAATCTTTGGAT+CGG + Chr6:6190796-6190815 MsG0680030621.01.T01:CDS 30.0%
TGAAAACTGTAAATGTGGTT+AGG - Chr6:6192205-6192224 None:intergenic 30.0%
TGATTTATTAGCATAAGCAC+TGG + Chr6:6192985-6193004 MsG0680030621.01.T01:intron 30.0%
TGTTCTCGAAAAGAAGATAA+GGG - Chr6:6194105-6194124 None:intergenic 30.0%
TTCAGGTATGAACATTGTTA+AGG - Chr6:6193990-6194009 None:intergenic 30.0%
TTGAATTTCTTCGGATTCAA+TGG + Chr6:6192597-6192616 MsG0680030621.01.T01:CDS 30.0%
TTGCAAAAATTTGGGGATAA+TGG - Chr6:6193799-6193818 None:intergenic 30.0%
TTTCTTCTTGGAAAGAGAAA+GGG + Chr6:6191755-6191774 MsG0680030621.01.T01:CDS 30.0%
TTTGACACAAACAAAACCAA+AGG - Chr6:6190759-6190778 None:intergenic 30.0%
TTTGTAAGCTTCATAGGATT+CGG - Chr6:6192775-6192794 None:intergenic 30.0%
! AACATTGTTTTCGGTATTTC+TGG - Chr6:6192294-6192313 None:intergenic 30.0%
! ACATATTTTATCTGTGAGGA+TGG + Chr6:6192386-6192405 MsG0680030621.01.T01:intron 30.0%
! ATTGTCCTTATTTGGCTTAT+GGG - Chr6:6192159-6192178 None:intergenic 30.0%
! CCTGATTGATTCAATATTCA+TGG + Chr6:6191527-6191546 MsG0680030621.01.T01:intron 30.0%
! GATTGATTCAATATTCATGG+AGG + Chr6:6191530-6191549 MsG0680030621.01.T01:intron 30.0%
! TATAACCTTGTTGTGTTCTT+AGG - Chr6:6190570-6190589 None:intergenic 30.0%
! TCCATTATACACATTAGCTT+CGG - Chr6:6191353-6191372 None:intergenic 30.0%
! TGAACTAGTATTCTGTCTTT+TGG - Chr6:6191682-6191701 None:intergenic 30.0%
! TGTACTTTCAATTGTTGCTT+TGG + Chr6:6190611-6190630 MsG0680030621.01.T01:CDS 30.0%
! TTTTGCTTCTCTTGAAACAT+TGG - Chr6:6190396-6190415 None:intergenic 30.0%
! TTTTTGTGCAGATATCAGTA+TGG + Chr6:6193876-6193895 MsG0680030621.01.T01:intron 30.0%
!! AAAAGTTGATTTGAGACCAT+TGG - Chr6:6190499-6190518 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + Chr6:6193354-6193373 MsG0680030621.01.T01:intron 30.0%
!! GGCTATTTCTTGAATTTCTT+CGG + Chr6:6192588-6192607 MsG0680030621.01.T01:CDS 30.0%
!!! TGCAATGGTTTTATATGGTT+TGG + Chr6:6190706-6190725 MsG0680030621.01.T01:CDS 30.0%
!!! TGTAACATGGTTTTAGATTG+CGG + Chr6:6192906-6192925 MsG0680030621.01.T01:intron 30.0%
!!! TTTCTTGCTTTTTCAAGGTT+TGG + Chr6:6194456-6194475 MsG0680030621.01.T01:CDS 30.0%
AACTTCTGACATGTTTGACA+TGG + Chr6:6190469-6190488 MsG0680030621.01.T01:CDS 35.0%
AAGTTCAATGCAATGGTTTC+TGG + Chr6:6194139-6194158 MsG0680030621.01.T01:CDS 35.0%
AATGTGGTTAGGAAGTAAAC+AGG - Chr6:6192194-6192213 None:intergenic 35.0%
ACAAAGTCACGAAAATCGTT+AGG - Chr6:6192439-6192458 None:intergenic 35.0%
ACAGATGCTTATCAAAGATG+AGG + Chr6:6191732-6191751 MsG0680030621.01.T01:CDS 35.0%
ACATAACAGATTACCCAAAG+GGG - Chr6:6194022-6194041 None:intergenic 35.0%
ACCTCTCTTTCATTACACAT+TGG - Chr6:6190939-6190958 None:intergenic 35.0%
AGAAGATTATGTTGCTCCTT+TGG + Chr6:6190740-6190759 MsG0680030621.01.T01:CDS 35.0%
AGACATAGATTGATCAGAAC+TGG + Chr6:6191793-6191812 MsG0680030621.01.T01:CDS 35.0%
ATCAGAACTGGTTATAAAGC+AGG + Chr6:6191805-6191824 MsG0680030621.01.T01:CDS 35.0%
ATTTGCATGTGATTCAACCT+TGG + Chr6:6190667-6190686 MsG0680030621.01.T01:CDS 35.0%
CAAAGTCACGAAAATCGTTA+GGG - Chr6:6192438-6192457 None:intergenic 35.0%
CAGAGGGTTAAGACAAAAAA+TGG - Chr6:6191429-6191448 None:intergenic 35.0%
CATAGCCTAAAAAGTTGCAT+AGG - Chr6:6192825-6192844 None:intergenic 35.0%
GAATAGAGTGAATGAGTAGA+AGG - Chr6:6193954-6193973 None:intergenic 35.0%
GACACTGAAAACTGTAAATG+TGG - Chr6:6192210-6192229 None:intergenic 35.0%
GACATAACAGATTACCCAAA+GGG - Chr6:6194023-6194042 None:intergenic 35.0%
GGTTACAAAGTTCAATGCAA+TGG + Chr6:6194132-6194151 MsG0680030621.01.T01:CDS 35.0%
GTGTTCTCGAAAAGAAGATA+AGG - Chr6:6194106-6194125 None:intergenic 35.0%
GTTGAAAGAACTATATCAGC+TGG + Chr6:6194598-6194617 MsG0680030621.01.T01:three_prime_UTR 35.0%
GTTTCTTCTTGGAAAGAGAA+AGG + Chr6:6191754-6191773 MsG0680030621.01.T01:CDS 35.0%
TAAGCATCATCATCAATCCT+AGG - Chr6:6190870-6190889 None:intergenic 35.0%
TATTAGCAAGAGTTCGAACT+CGG + Chr6:6191197-6191216 MsG0680030621.01.T01:intron 35.0%
TCAAAGATGAGGTTTCTTCT+TGG + Chr6:6191743-6191762 MsG0680030621.01.T01:CDS 35.0%
TCAGAACTGGTTATAAAGCA+GGG + Chr6:6191806-6191825 MsG0680030621.01.T01:CDS 35.0%
TCCAATGTGTAATGAAAGAG+AGG + Chr6:6190935-6190954 MsG0680030621.01.T01:CDS 35.0%
TTAAGAACGACATGACGATA+GGG - Chr6:6194045-6194064 None:intergenic 35.0%
TTAGAGCTCATTTGAATGGA+TGG + Chr6:6192706-6192725 MsG0680030621.01.T01:CDS 35.0%
TTATAGGGAAAACCTGACTT+GGG + Chr6:6192459-6192478 MsG0680030621.01.T01:intron 35.0%
TTATCTGTGAGGATGGAATA+AGG + Chr6:6192393-6192412 MsG0680030621.01.T01:intron 35.0%
TTCTATCTTCACCGGTAATT+TGG + Chr6:6191234-6191253 MsG0680030621.01.T01:intron 35.0%
TTCTTCTTGGAAAGAGAAAG+GGG + Chr6:6191756-6191775 MsG0680030621.01.T01:CDS 35.0%
TTGTAAGCTTCATAGGATTC+GGG - Chr6:6192774-6192793 None:intergenic 35.0%
TTTAAGAACGACATGACGAT+AGG - Chr6:6194046-6194065 None:intergenic 35.0%
TTTATAAGCTCTCCACCATA+TGG - Chr6:6193457-6193476 None:intergenic 35.0%
TTTATAGGGAAAACCTGACT+TGG + Chr6:6192458-6192477 MsG0680030621.01.T01:intron 35.0%
TTTATCCAAACAAGTCCTAG+AGG + Chr6:6193733-6193752 MsG0680030621.01.T01:intron 35.0%
TTTGCATGTGATTCAACCTT+GGG + Chr6:6190668-6190687 MsG0680030621.01.T01:CDS 35.0%
! CAAAAATTTGGGGATAATGG+TGG - Chr6:6193796-6193815 None:intergenic 35.0%
! CAACTTGTGTTTTCACTTTG+AGG + Chr6:6192548-6192567 MsG0680030621.01.T01:CDS 35.0%
! CATTGTCCTTATTTGGCTTA+TGG - Chr6:6192160-6192179 None:intergenic 35.0%
! CCATTATACACATTAGCTTC+GGG - Chr6:6191352-6191371 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - Chr6:6193223-6193242 None:intergenic 35.0%
! GTTTCTGGACTATTTCAACT+AGG + Chr6:6194154-6194173 MsG0680030621.01.T01:CDS 35.0%
! GTTTGACTTTAGGCTCTATT+TGG + Chr6:6193407-6193426 MsG0680030621.01.T01:intron 35.0%
! TGATGATGCTTATGATGTTG+AGG + Chr6:6190878-6190897 MsG0680030621.01.T01:CDS 35.0%
! TGCTGCAACATAAGGTTTTA+GGG + Chr6:6192937-6192956 MsG0680030621.01.T01:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - Chr6:6193219-6193238 None:intergenic 35.0%
! TTCTTTGTCTTGGATGCTTT+TGG + Chr6:6190823-6190842 MsG0680030621.01.T01:CDS 35.0%
!! AACTAGGAAGTGCTTATGAA+TGG + Chr6:6194170-6194189 MsG0680030621.01.T01:CDS 35.0%
!! ACTAGGAAGTGCTTATGAAT+GGG + Chr6:6194171-6194190 MsG0680030621.01.T01:CDS 35.0%
!! TCTTTTCGAGAACACAATGT+CGG + Chr6:6194111-6194130 MsG0680030621.01.T01:CDS 35.0%
!!! CAATGCAAACATGCTACTTT+TGG + Chr6:6192087-6192106 MsG0680030621.01.T01:intron 35.0%
AACAAGTGTTTGAGCCCAAA+TGG - Chr6:6191564-6191583 None:intergenic 40.0%
AACCCTAGTTGGACAATCAT+TGG - Chr6:6191493-6191512 None:intergenic 40.0%
AAGCGACACTCATTTGGAAA+CGG - Chr6:6193120-6193139 None:intergenic 40.0%
ACATTTCCCTTGAGAATCAG+AGG - Chr6:6191446-6191465 None:intergenic 40.0%
AGAACCATAGGAAAGCTCAA+AGG - Chr6:6190906-6190925 None:intergenic 40.0%
AGAAGATAAGGGACAAGGAA+AGG - Chr6:6194094-6194113 None:intergenic 40.0%
AGGTTAAGAAGTTGAAGCCT+AGG + Chr6:6190850-6190869 MsG0680030621.01.T01:CDS 40.0%
AGGTTTGGCATTCCTTGTTA+TGG + Chr6:6194471-6194490 MsG0680030621.01.T01:CDS 40.0%
ATCGTAATTCGAACCCTAGT+TGG - Chr6:6191504-6191523 None:intergenic 40.0%
ATGGAGGCTTATTAGCCATT+TGG + Chr6:6191546-6191565 MsG0680030621.01.T01:intron 40.0%
CAAGACCCATAAGCCAAATA+AGG + Chr6:6192151-6192170 MsG0680030621.01.T01:intron 40.0%
CATAGAAGACACTCAGAATC+GGG + Chr6:6194286-6194305 MsG0680030621.01.T01:CDS 40.0%
CATTTCCCTTGAGAATCAGA+GGG - Chr6:6191445-6191464 None:intergenic 40.0%
CCAATAGACAAGCTCAGATA+AGG + Chr6:6193613-6193632 MsG0680030621.01.T01:intron 40.0%
CCCGAAGCTAATGTGTATAA+TGG + Chr6:6191349-6191368 MsG0680030621.01.T01:intron 40.0%
CCGGTCAAATTCCAAATTAC+CGG - Chr6:6191248-6191267 None:intergenic 40.0%
CCTTATCTGAGCTTGTCTAT+TGG - Chr6:6193616-6193635 None:intergenic 40.0%
CGAAAAGAAGATAAGGGACA+AGG - Chr6:6194099-6194118 None:intergenic 40.0%
CGGTGAAGATAGAATCGATT+GGG - Chr6:6191228-6191247 None:intergenic 40.0%
CTTAACCCTCTGATTCTCAA+GGG + Chr6:6191437-6191456 MsG0680030621.01.T01:intron 40.0%
GAAGATAAGGGACAAGGAAA+GGG - Chr6:6194093-6194112 None:intergenic 40.0%
GACCAATGATTGTCCAACTA+GGG + Chr6:6191488-6191507 MsG0680030621.01.T01:intron 40.0%
GAGGTTGAACAACAAGTGAA+TGG + Chr6:6192567-6192586 MsG0680030621.01.T01:CDS 40.0%
GCAAACCATTCCACATTTCA+AGG + Chr6:6191924-6191943 MsG0680030621.01.T01:CDS 40.0%
GCAGATATCAGTATGGAAGA+AGG + Chr6:6193883-6193902 MsG0680030621.01.T01:intron 40.0%
GCATAGAAGACACTCAGAAT+CGG + Chr6:6194285-6194304 MsG0680030621.01.T01:CDS 40.0%
GCTGAAAACAGTTTGTGATC+AGG + Chr6:6193540-6193559 MsG0680030621.01.T01:intron 40.0%
GCTGTTAGAGCTCATTTGAA+TGG + Chr6:6192702-6192721 MsG0680030621.01.T01:CDS 40.0%
GCTTACCTTGAAATGTGGAA+TGG - Chr6:6191932-6191951 None:intergenic 40.0%
GGAATCTGAACAAGAACCAT+AGG - Chr6:6190918-6190937 None:intergenic 40.0%
GGACATAACAGATTACCCAA+AGG - Chr6:6194024-6194043 None:intergenic 40.0%
GTCAGCATCAGATGTAACAT+TGG - Chr6:6191590-6191609 None:intergenic 40.0%
GTTATGGGTTTGGACTTGAT+TGG + Chr6:6194487-6194506 MsG0680030621.01.T01:CDS 40.0%
TCAAGTCCAAACCCATAACA+AGG - Chr6:6194486-6194505 None:intergenic 40.0%
TCTGAGTGTCTTCTATGCAA+TGG - Chr6:6194283-6194302 None:intergenic 40.0%
TCTTAACCCTCTGATTCTCA+AGG + Chr6:6191436-6191455 MsG0680030621.01.T01:intron 40.0%
TGAATCAGAACTACCCCTTT+GGG + Chr6:6194006-6194025 MsG0680030621.01.T01:CDS 40.0%
TGACCAATGATTGTCCAACT+AGG + Chr6:6191487-6191506 MsG0680030621.01.T01:intron 40.0%
TGCATGAGGTAATCAGGATT+TGG - Chr6:6191907-6191926 None:intergenic 40.0%
TGGAGGCTTATTAGCCATTT+GGG + Chr6:6191547-6191566 MsG0680030621.01.T01:intron 40.0%
TGGGTTGTGACAAAGAAAAC+AGG + Chr6:6194190-6194209 MsG0680030621.01.T01:CDS 40.0%
TGTTTGACATGGTTGACCAA+TGG + Chr6:6190480-6190499 MsG0680030621.01.T01:CDS 40.0%
TGTTTGGAGGATTAAGGCTT+TGG + Chr6:6192629-6192648 MsG0680030621.01.T01:CDS 40.0%
TTTACCAAGCCCTTACCATA+TGG + Chr6:6193439-6193458 MsG0680030621.01.T01:intron 40.0%
! AATGTGGAATGGTTTGCATG+AGG - Chr6:6191921-6191940 None:intergenic 40.0%
! AGAAGTCTTTTAGCAGCACA+TGG + Chr6:6194421-6194440 MsG0680030621.01.T01:CDS 40.0%
! ATGGTTTGCATGAGGTAATC+AGG - Chr6:6191913-6191932 None:intergenic 40.0%
! CCAATCGATTCTATCTTCAC+CGG + Chr6:6191226-6191245 MsG0680030621.01.T01:intron 40.0%
! CCGGTAATTTGGAATTTGAC+CGG + Chr6:6191245-6191264 MsG0680030621.01.T01:intron 40.0%
! CTGCTGCAACATAAGGTTTT+AGG + Chr6:6192936-6192955 MsG0680030621.01.T01:intron 40.0%
! CTGGTCCTATGCAACTTTTT+AGG + Chr6:6192817-6192836 MsG0680030621.01.T01:CDS 40.0%
! GAATCGGGTTTGGAGTTATT+AGG + Chr6:6194301-6194320 MsG0680030621.01.T01:CDS 40.0%
! GGTTTGGCATTCCTTGTTAT+GGG + Chr6:6194472-6194491 MsG0680030621.01.T01:CDS 40.0%
! GTAATTTGGAATTTGACCGG+TGG + Chr6:6191248-6191267 MsG0680030621.01.T01:intron 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - Chr6:6193220-6193239 None:intergenic 40.0%
! TCTTGGATGCTTTTGGATCA+AGG + Chr6:6190830-6190849 MsG0680030621.01.T01:CDS 40.0%
!! AAAGGGACTGATTTTGGTGA+TGG - Chr6:6194076-6194095 None:intergenic 40.0%
!! ACAAGGAAAGGGACTGATTT+TGG - Chr6:6194082-6194101 None:intergenic 40.0%
!! ATTAAGGCTTTGGAGGAATC+AGG + Chr6:6192639-6192658 MsG0680030621.01.T01:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + Chr6:6193358-6193377 MsG0680030621.01.T01:intron 40.0%
AAGACACTCAGAATCGGGTT+TGG + Chr6:6194291-6194310 MsG0680030621.01.T01:CDS 45.0%
AAGCTCTCCACCATATGGTA+AGG - Chr6:6193452-6193471 None:intergenic 45.0%
AAGGACAACAGTTGAGGACA+TGG + Chr6:6192674-6192693 MsG0680030621.01.T01:CDS 45.0%
AATGCTAACCATTGCCCTTG+GGG + Chr6:6191972-6191991 MsG0680030621.01.T01:intron 45.0%
AATTGCCAGTCAAACTCCAC+CGG - Chr6:6191267-6191286 None:intergenic 45.0%
ACCTTGGCAGTTAATACAGC+AGG - Chr6:6192852-6192871 None:intergenic 45.0%
AGAATGCTAACCATTGCCCT+TGG + Chr6:6191970-6191989 MsG0680030621.01.T01:intron 45.0%
AGCTCTCCACCATATGGTAA+GGG - Chr6:6193451-6193470 None:intergenic 45.0%
AGCTGGTGTTTGGAGGATTA+AGG + Chr6:6192623-6192642 MsG0680030621.01.T01:CDS 45.0%
CAACAACATCGTTGGCATTC+TGG + Chr6:6192798-6192817 MsG0680030621.01.T01:CDS 45.0%
CCGGTGAAGATAGAATCGAT+TGG - Chr6:6191229-6191248 None:intergenic 45.0%
CTCGGAATCAGAGAGTTAGA+GGG - Chr6:6191106-6191125 None:intergenic 45.0%
CTGAATCAGAACTACCCCTT+TGG + Chr6:6194005-6194024 MsG0680030621.01.T01:CDS 45.0%
GAATGCTAACCATTGCCCTT+GGG + Chr6:6191971-6191990 MsG0680030621.01.T01:intron 45.0%
GACACTCATTTGGAAACGGA+GGG - Chr6:6193116-6193135 None:intergenic 45.0%
GATTACCCTAGCTCACAGTT+TGG - Chr6:6191317-6191336 None:intergenic 45.0%
GCAATGGTTAGCATTCTCCT+TGG - Chr6:6191967-6191986 None:intergenic 45.0%
GGATCCTTTGAGCTTTCCTA+TGG + Chr6:6190899-6190918 MsG0680030621.01.T01:CDS 45.0%
GTTGGAAAGGACAACAGTTG+AGG + Chr6:6192668-6192687 MsG0680030621.01.T01:CDS 45.0%
TCAATGGAACAGCTGGTGTT+TGG + Chr6:6192613-6192632 MsG0680030621.01.T01:CDS 45.0%
TCAGATGCTGCTGCAACATA+AGG + Chr6:6192929-6192948 MsG0680030621.01.T01:intron 45.0%
TCCAACCAAACTGTGAGCTA+GGG + Chr6:6191309-6191328 MsG0680030621.01.T01:intron 45.0%
TCCTGCTGTATTAACTGCCA+AGG + Chr6:6192848-6192867 MsG0680030621.01.T01:CDS 45.0%
TCTCGGAATCAGAGAGTTAG+AGG - Chr6:6191107-6191126 None:intergenic 45.0%
TGGCTAAAGCGACACTCATT+TGG - Chr6:6193126-6193145 None:intergenic 45.0%
TTCCAACCAAACTGTGAGCT+AGG + Chr6:6191308-6191327 MsG0680030621.01.T01:intron 45.0%
TTCCTTAACCATTGCCCTCA+GGG + Chr6:6192111-6192130 MsG0680030621.01.T01:intron 45.0%
TTCGGATTCAATGGAACAGC+TGG + Chr6:6192606-6192625 MsG0680030621.01.T01:CDS 45.0%
TTGCAATAGCAGAGACCTCT+AGG - Chr6:6193751-6193770 None:intergenic 45.0%
! CTGGTAATCTGGAGTTAGAC+CGG + Chr6:6191146-6191165 MsG0680030621.01.T01:intron 45.0%
! GGCATTCCTTGTTATGGGTT+TGG + Chr6:6194477-6194496 MsG0680030621.01.T01:CDS 45.0%
! TTGGAGGATTAAGGCTTTGG+AGG + Chr6:6192632-6192651 MsG0680030621.01.T01:CDS 45.0%
!! AGAGACCTCTAGGACTTGTT+TGG - Chr6:6193741-6193760 None:intergenic 45.0%
!! CAAAGGGGTAGTTCTGATTC+AGG - Chr6:6194007-6194026 None:intergenic 45.0%
!! GATCGGCTTGTTCTTTGTCT+TGG + Chr6:6190813-6190832 MsG0680030621.01.T01:CDS 45.0%
!! GTGCTGCTTGTCAACTTGAT+TGG + Chr6:6191656-6191675 MsG0680030621.01.T01:CDS 45.0%
!! TGGGACTAGTTCAAGCAAGA+TGG + Chr6:6192478-6192497 MsG0680030621.01.T01:CDS 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + Chr6:6193357-6193376 MsG0680030621.01.T01:intron 45.0%
!!! GGACTGATTTTGGTGATGGA+AGG - Chr6:6194072-6194091 None:intergenic 45.0%
!! TAAAAATAGAAATATAATAT+TGG + Chr6:6192010-6192029 MsG0680030621.01.T01:intron 5.0%
ACCAAGCCCTTACCATATGG+TGG + Chr6:6193442-6193461 MsG0680030621.01.T01:intron 50.0%
ACCCTAGCTCACAGTTTGGT+TGG - Chr6:6191313-6191332 None:intergenic 50.0%
ATGGAACAGCTGGTGTTTGG+AGG + Chr6:6192616-6192635 MsG0680030621.01.T01:CDS 50.0%
CGACACTCATTTGGAAACGG+AGG - Chr6:6193117-6193136 None:intergenic 50.0%
CTTCCTTAACCATTGCCCTC+AGG + Chr6:6192110-6192129 MsG0680030621.01.T01:intron 50.0%
GCTTGAACTAGTCCCAAGTC+AGG - Chr6:6192474-6192493 None:intergenic 50.0%
TCCACCATATGGTAAGGGCT+TGG - Chr6:6193446-6193465 None:intergenic 50.0%
TGATTCCGAGAGCGAGCAAA+GGG + Chr6:6191116-6191135 MsG0680030621.01.T01:intron 50.0%
TTTGACCGGTGGAGTTTGAC+TGG + Chr6:6191259-6191278 MsG0680030621.01.T01:intron 50.0%
! AATCAGGCGGTTGGTTGGAA+AGG + Chr6:6192655-6192674 MsG0680030621.01.T01:CDS 50.0%
! AGGCTGTTTCAGAGAGCTTG+TGG - Chr6:6193579-6193598 None:intergenic 50.0%
!! AAGGCTTTGGAGGAATCAGG+CGG + Chr6:6192642-6192661 MsG0680030621.01.T01:CDS 50.0%
AACCATTGCCCTTGGGGCAT+TGG + Chr6:6191978-6191997 MsG0680030621.01.T01:intron 55.0%
AGCCCTGAGGGCAATGGTTA+AGG - Chr6:6192116-6192135 None:intergenic 55.0%
ATCCAATGCCCCAAGGGCAA+TGG - Chr6:6191983-6192002 None:intergenic 55.0%
CCCCTTATCCAATGCCCCAA+GGG - Chr6:6191989-6192008 None:intergenic 55.0%
CTGATTCCGAGAGCGAGCAA+AGG + Chr6:6191115-6191134 MsG0680030621.01.T01:intron 55.0%
GATTCCGAGAGCGAGCAAAG+GGG + Chr6:6191117-6191136 MsG0680030621.01.T01:intron 55.0%
TCCCCTTATCCAATGCCCCA+AGG - Chr6:6191990-6192009 None:intergenic 55.0%
! CTTTGGAGGAATCAGGCGGT+TGG + Chr6:6192646-6192665 MsG0680030621.01.T01:CDS 55.0%
!! CCCTTGGGGCATTGGATAAG+GGG + Chr6:6191986-6192005 MsG0680030621.01.T01:intron 55.0%
!! GCCCTTGGGGCATTGGATAA+GGG + Chr6:6191985-6192004 MsG0680030621.01.T01:intron 55.0%
!! TGCCCTTGGGGCATTGGATA+AGG + Chr6:6191984-6192003 MsG0680030621.01.T01:intron 55.0%
AACCATTGCCCTCAGGGCTC+AGG + Chr6:6192117-6192136 MsG0680030621.01.T01:intron 60.0%
AACCATTGCCCTGAGCCCTG+AGG - Chr6:6192129-6192148 None:intergenic 60.0%
ACCATTGCCCTCAGGGCTCA+GGG + Chr6:6192118-6192137 MsG0680030621.01.T01:intron 60.0%
ACCATTGCCCTGAGCCCTGA+GGG - Chr6:6192128-6192147 None:intergenic 60.0%
GGAGGAATCAGGCGGTTGGT+TGG + Chr6:6192650-6192669 MsG0680030621.01.T01:CDS 60.0%
! AGGGGCTCGCACTGGTAATC+TGG + Chr6:6191135-6191154 MsG0680030621.01.T01:intron 60.0%
CGAGCCCCTTTGCTCGCTCT+CGG - Chr6:6191124-6191143 None:intergenic 65.0%
GCCCTCAGGGCTCAGGGCAA+TGG + Chr6:6192124-6192143 MsG0680030621.01.T01:intron 70.0%
GCCCTGAGCCCTGAGGGCAA+TGG - Chr6:6192122-6192141 None:intergenic 70.0%
GCGAGCAAAGGGGCTCGCAC+TGG + Chr6:6191127-6191146 MsG0680030621.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 6190384 6194874 6190384 ID=MsG0680030621.01;Name=MsG0680030621.01
Chr6 mRNA 6190384 6194874 6190384 ID=MsG0680030621.01.T01;Parent=MsG0680030621.01;Name=MsG0680030621.01.T01;_AED=0.45;_eAED=0.45;_QI=0|1|0.75|1|1|1|4|349|641
Chr6 exon 6190384 6190956 6190384 ID=MsG0680030621.01.T01:exon:3709;Parent=MsG0680030621.01.T01
Chr6 exon 6191637 6191945 6191637 ID=MsG0680030621.01.T01:exon:3710;Parent=MsG0680030621.01.T01
Chr6 exon 6192465 6192869 6192465 ID=MsG0680030621.01.T01:exon:3711;Parent=MsG0680030621.01.T01
Chr6 exon 6193887 6194874 6193887 ID=MsG0680030621.01.T01:exon:3712;Parent=MsG0680030621.01.T01
Chr6 CDS 6190384 6190956 6190384 ID=MsG0680030621.01.T01:cds;Parent=MsG0680030621.01.T01
Chr6 CDS 6191637 6191945 6191637 ID=MsG0680030621.01.T01:cds;Parent=MsG0680030621.01.T01
Chr6 CDS 6192465 6192869 6192465 ID=MsG0680030621.01.T01:cds;Parent=MsG0680030621.01.T01
Chr6 CDS 6193887 6194525 6193887 ID=MsG0680030621.01.T01:cds;Parent=MsG0680030621.01.T01
Chr6 three_prime_UTR 6194526 6194874 6194526 ID=MsG0680030621.01.T01:three_prime_utr;Parent=MsG0680030621.01.T01
Gene Sequence

>MsG0680030621.01.T01

TTGAATTCTCCAATGTTTCAAGAGAAGCAAAAAAAATCTACAAGTACAAAACAGTTTACATGGGTTATTCTCCTTAAACTTCACAAACTTCTGACATGTTTGACATGGTTGACCAATGGTCTCAAATCAACTTTTTCATTGGTCAAAAAGAGAATTTCATTATCTGATATTGGTGATGAAAATCCTAAGAACACAACAAGGTTATATAGATTCATCAAAGTGTTTCTTGTACTTTCAATTGTTGCTTTGGTTGTTGAAATCATTGCTCATTTTAATCAATGGAATTTGCATGTGATTCAACCTTGGGAAGTTAAGAATCTTTTGCAATGGTTTTATATGGTTTGGATTTCTTTTAGAGAAGATTATGTTGCTCCTTTGGTTTTGTTTGTGTCAAAATTTTGTATTGTTTTGTTCTTGATTCAATCTTTGGATCGGCTTGTTCTTTGTCTTGGATGCTTTTGGATCAAGGTTAAGAAGTTGAAGCCTAGGATTGATGATGATGCTTATGATGTTGAGGATCCTTTGAGCTTTCCTATGGTTCTTGTTCAGATTCCAATGTGTAATGAAAGAGAGGTTTATTCACAATCAATTGGTGCTGCTTGTCAACTTGATTGGCCAAAAGACAGAATACTAGTTCAAGTATTGGATGATTCAGATGATCCTAATTTACAGATGCTTATCAAAGATGAGGTTTCTTCTTGGAAAGAGAAAGGGGTCAACATTGTTTATAGACATAGATTGATCAGAACTGGTTATAAAGCAGGGAATCTTAAGTCAGCTATGTCATGTGACTATGTCAAAAACTATGAATTTGTGGCAATATTTGATGCAGATTTTCAGCCAAATCCTGATTACCTCATGCAAACCATTCCACATTTCAAGGGAAAACCTGACTTGGGACTAGTTCAAGCAAGATGGTCATATGTGAACAAAGATGAGAATCTTCTAACAAGGCTTCAAAACATCAACTTGTGTTTTCACTTTGAGGTTGAACAACAAGTGAATGGCTATTTCTTGAATTTCTTCGGATTCAATGGAACAGCTGGTGTTTGGAGGATTAAGGCTTTGGAGGAATCAGGCGGTTGGTTGGAAAGGACAACAGTTGAGGACATGGACATAGCTGTTAGAGCTCATTTGAATGGATGGAAATTTATCTACCTTAATGATGTTAAAGTTCTTTGTGAATTACCCGAATCCTATGAAGCTTACAAAAAACAACAACATCGTTGGCATTCTGGTCCTATGCAACTTTTTAGGCTATGTCTTCCTGCTGTATTAACTGCCAAGATATCAGTATGGAAGAAGGCAAACCTAATATTTTTGTTCTTCTTATTGAGGAAACTTATACTTCCCTTCTACTCATTCACTCTATTCTGCATCATACTACCCTTAACAATGTTCATACCTGAATCAGAACTACCCCTTTGGGTAATCTGTTATGTCCCTATCGTCATGTCGTTCTTAAACATCCTTCCATCACCAAAATCAGTCCCTTTCCTTGTCCCTTATCTTCTTTTCGAGAACACAATGTCGGTTACAAAGTTCAATGCAATGGTTTCTGGACTATTTCAACTAGGAAGTGCTTATGAATGGGTTGTGACAAAGAAAACAGGTAGATCATCTGAATCAGATTTGTTAGCATTAGCTGAAAGAGAATCTAAGTCTTCAAATGAAGATAAACCATTGCATAGAAGACACTCAGAATCGGGTTTGGAGTTATTAGGCAAAATTCAGAAAACAGAAGTGGTTTCTAAGAAGAAGAAAAACAAACTCTATAGGAAAGAATTAGCACTTGCTTTTCTTTTACTCACTGCTTGTGCTAGAAGTCTTTTAGCAGCACATGGTGTTCATTTCTATTTCTTGCTTTTTCAAGGTTTGGCATTCCTTGTTATGGGTTTGGACTTGATTGGTGAACAAGTTAGCTGA
Protein sequence

>MsG0680030621.01.T01

LNSPMFQEKQKKSTSTKQFTWVILLKLHKLLTCLTWLTNGLKSTFSLVKKRISLSDIGDENPKNTTRLYRFIKVFLVLSIVALVVEIIAHFNQWNLHVIQPWEVKNLLQWFYMVWISFREDYVAPLVLFVSKFCIVLFLIQSLDRLVLCLGCFWIKVKKLKPRIDDDAYDVEDPLSFPMVLVQIPMCNEREVYSQSIGAACQLDWPKDRILVQVLDDSDDPNLQMLIKDEVSSWKEKGVNIVYRHRLIRTGYKAGNLKSAMSCDYVKNYEFVAIFDADFQPNPDYLMQTIPHFKGKPDLGLVQARWSYVNKDENLLTRLQNINLCFHFEVEQQVNGYFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIYLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPAVLTAKISVWKKANLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPESELPLWVICYVPIVMSFLNILPSPKSVPFLVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKTGRSSESDLLALAERESKSSNEDKPLHRRHSESGLELLGKIQKTEVVSKKKKNKLYRKELALAFLLLTACARSLLAAHGVHFYFLLFQGLAFLVMGLDLIGEQVS*