Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046475.01.T01 | XP_013457925.1 | 99.554 | 448 | 2 | 0 | 1 | 448 | 1 | 448 | 0 | 929 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046475.01.T01 | Q9LF80 | 76.805 | 457 | 97 | 2 | 1 | 448 | 1 | 457 | 0 | 757 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046475.01.T01 | A0A072URH9 | 99.554 | 448 | 2 | 0 | 1 | 448 | 1 | 448 | 0.0 | 929 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005939.01 | MsG0880046475.01 | 0.835660 | 1.474668e-56 | 1.815278e-53 |
| MsG0780040801.01 | MsG0880046475.01 | 0.807905 | 4.022277e-50 | 2.267599e-47 |
| MsG0780040879.01 | MsG0880046475.01 | 0.802115 | 6.537085e-49 | 3.175897e-46 |
| MsG0780041293.01 | MsG0880046475.01 | 0.809589 | 1.756255e-50 | 1.035341e-47 |
| MsG0480021042.01 | MsG0880046475.01 | 0.835533 | 1.588117e-56 | 1.947469e-53 |
| MsG0580025191.01 | MsG0880046475.01 | 0.804801 | 1.814574e-49 | 9.444480e-47 |
| MsG0380016986.01 | MsG0880046475.01 | 0.810202 | 1.295800e-50 | 7.762357e-48 |
| MsG0380017116.01 | MsG0880046475.01 | 0.888535 | 5.417905e-73 | 4.213993e-69 |
| MsG0580027876.01 | MsG0880046475.01 | 0.833577 | 4.924678e-56 | 5.694771e-53 |
| MsG0580027877.01 | MsG0880046475.01 | 0.818408 | 1.991050e-52 | 1.489270e-49 |
| MsG0580029133.01 | MsG0880046475.01 | 0.806641 | 7.454670e-50 | 4.066942e-47 |
| MsG0680030621.01 | MsG0880046475.01 | 0.894679 | 1.964562e-75 | 1.973350e-71 |
| MsG0280009509.01 | MsG0880046475.01 | 0.814410 | 1.563043e-51 | 1.048050e-48 |
| MsG0780039441.01 | MsG0880046475.01 | 0.819830 | 9.453077e-53 | 7.354395e-50 |
| MsG0780039817.01 | MsG0880046475.01 | 0.806081 | 9.779055e-50 | 5.259758e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046475.01.T01 | MTR_4g108940 | 99.554 | 448 | 2 | 0 | 1 | 448 | 1 | 448 | 0.0 | 929 |
| MsG0880046475.01.T01 | MTR_3g037340 | 87.112 | 419 | 53 | 1 | 30 | 448 | 36 | 453 | 0.0 | 777 |
| MsG0880046475.01.T01 | MTR_4g119880 | 57.968 | 433 | 158 | 4 | 28 | 436 | 8 | 440 | 0.0 | 552 |
| MsG0880046475.01.T01 | MTR_7g108675 | 57.237 | 456 | 159 | 6 | 29 | 448 | 9 | 464 | 0.0 | 548 |
| MsG0880046475.01.T01 | MTR_8g058553 | 59.113 | 406 | 130 | 6 | 29 | 398 | 9 | 414 | 1.55e-176 | 505 |
| MsG0880046475.01.T01 | MTR_4g097240 | 47.027 | 370 | 150 | 7 | 94 | 430 | 75 | 431 | 3.80e-115 | 345 |
| MsG0880046475.01.T01 | MTR_5g015260 | 46.610 | 354 | 149 | 7 | 96 | 412 | 81 | 431 | 5.77e-111 | 334 |
| MsG0880046475.01.T01 | MTR_4g097230 | 44.416 | 385 | 166 | 11 | 72 | 420 | 43 | 415 | 2.76e-103 | 314 |
| MsG0880046475.01.T01 | MTR_4g108950 | 62.992 | 127 | 3 | 1 | 281 | 407 | 1 | 83 | 7.02e-48 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046475.01.T01 | AT5G07720 | 76.805 | 457 | 97 | 2 | 1 | 448 | 1 | 457 | 0.0 | 757 |
| MsG0880046475.01.T01 | AT1G74380 | 78.808 | 453 | 86 | 3 | 1 | 443 | 1 | 453 | 0.0 | 747 |
| MsG0880046475.01.T01 | AT1G18690 | 65.385 | 494 | 102 | 6 | 19 | 443 | 18 | 511 | 0.0 | 644 |
| MsG0880046475.01.T01 | AT1G18690 | 65.385 | 494 | 102 | 6 | 19 | 443 | 18 | 511 | 0.0 | 644 |
| MsG0880046475.01.T01 | AT1G18690 | 65.385 | 494 | 102 | 6 | 19 | 443 | 18 | 511 | 0.0 | 644 |
| MsG0880046475.01.T01 | AT1G18690 | 65.385 | 494 | 102 | 6 | 19 | 443 | 18 | 511 | 0.0 | 644 |
| MsG0880046475.01.T01 | AT3G62720 | 57.569 | 436 | 156 | 4 | 30 | 436 | 10 | 445 | 0.0 | 538 |
| MsG0880046475.01.T01 | AT3G62720 | 57.569 | 436 | 156 | 4 | 30 | 436 | 10 | 445 | 0.0 | 538 |
| MsG0880046475.01.T01 | AT4G02500 | 58.124 | 437 | 153 | 4 | 30 | 436 | 10 | 446 | 0.0 | 531 |
| MsG0880046475.01.T01 | AT2G22900 | 42.133 | 375 | 169 | 8 | 77 | 412 | 66 | 431 | 3.36e-99 | 304 |
| MsG0880046475.01.T01 | AT4G37690 | 42.382 | 361 | 160 | 6 | 91 | 412 | 63 | 414 | 1.88e-98 | 302 |
| MsG0880046475.01.T01 | AT4G38310 | 42.149 | 121 | 61 | 4 | 91 | 209 | 4 | 117 | 1.87e-24 | 98.2 |
Find 121 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACTATTTGCATGGTTAT+TGG | 0.153701 | 8:+73819554 | MsG0880046475.01.T01:CDS |
| AGAATCCCAATCCGAGATTT+TGG | 0.154778 | 8:-73818894 | None:intergenic |
| CTTTGGATTTGCTTGATGTT+TGG | 0.210969 | 8:+73819368 | MsG0880046475.01.T01:CDS |
| GATTGAAATTGTTTATAATA+TGG | 0.227280 | 8:+73819087 | MsG0880046475.01.T01:CDS |
| TTTGGATTTGCTTGATGTTT+GGG | 0.235100 | 8:+73819369 | MsG0880046475.01.T01:CDS |
| TAAGTATGATGATTATAATT+TGG | 0.236646 | 8:+73819255 | MsG0880046475.01.T01:CDS |
| CGAACAAAACTAGGGTATTC+AGG | 0.252554 | 8:-73818944 | None:intergenic |
| TTACTATTTGCATGGTTATT+GGG | 0.254625 | 8:+73819555 | MsG0880046475.01.T01:CDS |
| TTCTAATTCTCTTAATCTTC+GGG | 0.268944 | 8:-73819798 | None:intergenic |
| TTTCTAATTCTCTTAATCTT+CGG | 0.288847 | 8:-73819799 | None:intergenic |
| CACCAAATCCACTCAACTTC+AGG | 0.293022 | 8:-73819181 | None:intergenic |
| AGTGGCATTTGGATTGAAAA+AGG | 0.294582 | 8:-73818858 | None:intergenic |
| GAGAAGTATCATCCGGGATT+AGG | 0.296194 | 8:+73819610 | MsG0880046475.01.T01:CDS |
| ATATGGAGTTAGCTGGTTAT+TGG | 0.301811 | 8:+73819119 | MsG0880046475.01.T01:CDS |
| AGAAGTATCATCCGGGATTA+GGG | 0.307944 | 8:+73819611 | MsG0880046475.01.T01:CDS |
| TAATATGGCTCATCTTGATA+TGG | 0.312719 | 8:+73819102 | MsG0880046475.01.T01:CDS |
| TAGGAATTGTCAGTGGTCTT+TGG | 0.314797 | 8:+73819351 | MsG0880046475.01.T01:CDS |
| TATGGAGTTAGCTGGTTATT+GGG | 0.322730 | 8:+73819120 | MsG0880046475.01.T01:CDS |
| TTTCAATTTCGCTGATAATC+AGG | 0.327651 | 8:+73819735 | MsG0880046475.01.T01:CDS |
| AACAAATAATGATCCCCAAT+TGG | 0.330618 | 8:-73819022 | None:intergenic |
| GATTATAATTTGGTTATTCA+TGG | 0.333753 | 8:+73819265 | MsG0880046475.01.T01:CDS |
| TTTGATTCAGCCAAGCTTTA+CGG | 0.336535 | 8:-73818919 | None:intergenic |
| TGCTCAAACTCTACGGGTTC+AGG | 0.341836 | 8:+73819758 | MsG0880046475.01.T01:CDS |
| TATTTGCATGGTTATTGGGC+TGG | 0.343774 | 8:+73819559 | MsG0880046475.01.T01:CDS |
| TGGTTTCTTCGATCATGTTT+TGG | 0.349103 | 8:-73818772 | None:intergenic |
| GGGCTAAATTGCCTATGATT+AGG | 0.366293 | 8:+73819140 | MsG0880046475.01.T01:CDS |
| CTACTAAGACACCTCTCAAC+AGG | 0.366394 | 8:-73819700 | None:intergenic |
| GCTTGATGTTTGGGCTCCTA+TGG | 0.367140 | 8:+73819378 | MsG0880046475.01.T01:CDS |
| ACCCTGAAGTTGAGTGGATT+TGG | 0.369537 | 8:+73819179 | MsG0880046475.01.T01:CDS |
| TTCTGCTCAAACAACAAATC+AGG | 0.377468 | 8:-73819292 | None:intergenic |
| AAATGAGACAGTTACTCCTT+TGG | 0.389872 | 8:+73819819 | MsG0880046475.01.T01:CDS |
| AAGCCTTGTGATAACCCAAT+TGG | 0.394020 | 8:+73819007 | MsG0880046475.01.T01:CDS |
| ATTGGGCTGGGTTGGTTGAT+CGG | 0.403121 | 8:+73819572 | MsG0880046475.01.T01:CDS |
| ACAAATAATGATCCCCAATT+GGG | 0.409108 | 8:-73819021 | None:intergenic |
| TCTTCCCTGACAGGACCTTT+CGG | 0.411703 | 8:-73819403 | None:intergenic |
| TGGCCCCAAAATCTCGGATT+GGG | 0.428891 | 8:+73818889 | MsG0880046475.01.T01:CDS |
| AGCCTTGTGATAACCCAATT+GGG | 0.429820 | 8:+73819008 | MsG0880046475.01.T01:CDS |
| AAGGTGTTATCTTTGTCATC+AGG | 0.435503 | 8:-73818839 | None:intergenic |
| TCATGGATTGCTATCAATAC+TGG | 0.441376 | 8:+73819316 | MsG0880046475.01.T01:CDS |
| CCAAGGGTAAAAGTGGCATT+TGG | 0.442611 | 8:-73818869 | None:intergenic |
| TGGGTCCGAAAGGTCCTGTC+AGG | 0.446153 | 8:+73819398 | MsG0880046475.01.T01:CDS |
| GCTTTACCTCGAACAAAACT+AGG | 0.447188 | 8:-73818953 | None:intergenic |
| TTGGAGTTTGTTGCTGTGGT+TGG | 0.448034 | 8:-73818608 | None:intergenic |
| AACATTAACCTCCTAATCAT+AGG | 0.451739 | 8:-73819151 | None:intergenic |
| CTTGATGTTTGGGCTCCTAT+GGG | 0.451772 | 8:+73819379 | MsG0880046475.01.T01:CDS |
| AATGTCTTCGAATATCAAAC+TGG | 0.455388 | 8:-73819852 | None:intergenic |
| GCATGGTTATTGGGCTGGGT+TGG | 0.459215 | 8:+73819564 | MsG0880046475.01.T01:CDS |
| ATTGATTATTGTAGATTACA+TGG | 0.459859 | 8:+73819064 | MsG0880046475.01.T01:CDS |
| GAAGGAGAAGTGGATGGATA+AGG | 0.466292 | 8:+73819516 | MsG0880046475.01.T01:CDS |
| ATTTGCATGGTTATTGGGCT+GGG | 0.471612 | 8:+73819560 | MsG0880046475.01.T01:CDS |
| CACAACAGAAGCAGCAGTGC+AGG | 0.475156 | 8:+73818581 | MsG0880046475.01.T01:CDS |
| TACCCTTGGCCCCAAAATCT+CGG | 0.476888 | 8:+73818883 | MsG0880046475.01.T01:CDS |
| CATCTTGATATGGAGTTAGC+TGG | 0.484869 | 8:+73819112 | MsG0880046475.01.T01:CDS |
| AGTTGAGTGGATTTGGTGGA+TGG | 0.487432 | 8:+73819186 | MsG0880046475.01.T01:CDS |
| ATATTTGTTGCTGTCGAAGA+AGG | 0.487805 | 8:+73819498 | MsG0880046475.01.T01:CDS |
| TTTCCCGCCTCTTCCCTGAC+AGG | 0.490947 | 8:-73819412 | None:intergenic |
| ATTGGGTTATCACAAGGCTT+AGG | 0.492658 | 8:-73819004 | None:intergenic |
| GATGATTGAGAAGTATCATC+CGG | 0.498498 | 8:+73819603 | MsG0880046475.01.T01:CDS |
| GGCTAATCTTAAGGGGAGAC+CGG | 0.499656 | 8:+73819444 | MsG0880046475.01.T01:CDS |
| TGTAAGCCGTGTGGAAGTTA+TGG | 0.499800 | 8:+73819670 | MsG0880046475.01.T01:CDS |
| AATCAGGTGCTCAAACTCTA+CGG | 0.500273 | 8:+73819751 | MsG0880046475.01.T01:CDS |
| TGATCATCCGCTTCAAAAGC+CGG | 0.500867 | 8:-73819463 | None:intergenic |
| TTGGCCCCAAAATCTCGGAT+TGG | 0.500960 | 8:+73818888 | MsG0880046475.01.T01:CDS |
| GAACAAAACTAGGGTATTCA+GGG | 0.501504 | 8:-73818943 | None:intergenic |
| ACCAAATCCACTCAACTTCA+GGG | 0.502114 | 8:-73819180 | None:intergenic |
| TTGGTTAACGGCGTCGGAGT+CGG | 0.516215 | 8:-73818753 | None:intergenic |
| GTCAGCGTCGGATCGGATCT+CGG | 0.516879 | 8:-73818807 | None:intergenic |
| CTCGTCTTACGTGGCACTAT+CGG | 0.519609 | 8:+73818713 | MsG0880046475.01.T01:CDS |
| TCTTTGTCATCAGGATCAGA+TGG | 0.520049 | 8:-73818830 | None:intergenic |
| GAGAATTCTTACTATTTGCA+TGG | 0.526526 | 8:+73819547 | MsG0880046475.01.T01:CDS |
| GGGATTCTGACCGTAAAGCT+TGG | 0.532442 | 8:+73818909 | MsG0880046475.01.T01:CDS |
| GGGTTATCACAAGGCTTAGG+AGG | 0.532953 | 8:-73819001 | None:intergenic |
| TTTGGGGCCAAGGGTAAAAG+TGG | 0.535238 | 8:-73818876 | None:intergenic |
| GCTGTTGGAGTTTGTTGCTG+TGG | 0.538704 | 8:-73818612 | None:intergenic |
| CACCTCTCATCCCCTAATCC+CGG | 0.538975 | 8:-73819622 | None:intergenic |
| TTGATTATTGTAGATTACAT+GGG | 0.539461 | 8:+73819065 | MsG0880046475.01.T01:CDS |
| CTAAATTGCCTATGATTAGG+AGG | 0.543733 | 8:+73819143 | MsG0880046475.01.T01:CDS |
| GAAAGGTCCTGTCAGGGAAG+AGG | 0.545835 | 8:+73819405 | MsG0880046475.01.T01:CDS |
| ATCAGGTGCTCAAACTCTAC+GGG | 0.547907 | 8:+73819752 | MsG0880046475.01.T01:CDS |
| CCCACAAAATGAGTCACAAA+CGG | 0.555223 | 8:-73819646 | None:intergenic |
| CTGAAGTTGAGTGGATTTGG+TGG | 0.561532 | 8:+73819182 | MsG0880046475.01.T01:CDS |
| TGTTGTTTGAGCAGAAGTCA+TGG | 0.563372 | 8:+73819299 | MsG0880046475.01.T01:CDS |
| AGGTCCTGTCAGGGAAGAGG+CGG | 0.566987 | 8:+73819408 | MsG0880046475.01.T01:CDS |
| ACAGGACCTTTCGGACCCAT+AGG | 0.578826 | 8:-73819394 | None:intergenic |
| GATCTCGGCGATGATGCGGT+TGG | 0.579327 | 8:-73818792 | None:intergenic |
| TGGGTTGGTTGATCGGTATG+AGG | 0.581754 | 8:+73819579 | MsG0880046475.01.T01:CDS |
| CGGGATTAGGGGATGAGAGG+TGG | 0.581990 | 8:+73819623 | MsG0880046475.01.T01:CDS |
| TAATCATCATACTTAGACAA+AGG | 0.584692 | 8:-73819247 | None:intergenic |
| CGTCGGAGTCGGAAGAAATG+AGG | 0.586095 | 8:-73818742 | None:intergenic |
| GTCACCATCCTCGTCTTACG+TGG | 0.586985 | 8:+73818704 | MsG0880046475.01.T01:CDS |
| ATCGGATCTCGGCGATGATG+CGG | 0.590160 | 8:-73818796 | None:intergenic |
| GTGTCTTAGTAGCATGGAGA+GGG | 0.593651 | 8:+73819711 | MsG0880046475.01.T01:CDS |
| CAGATGGGTCAGCGTCGGAT+CGG | 0.594418 | 8:-73818814 | None:intergenic |
| GGTCCTGTCAGGGAAGAGGC+GGG | 0.595808 | 8:+73819409 | MsG0880046475.01.T01:CDS |
| TCTGCTCAAACAACAAATCA+GGG | 0.599326 | 8:-73819291 | None:intergenic |
| CTTTGTCATCAGGATCAGAT+GGG | 0.599657 | 8:-73818829 | None:intergenic |
| TCCCCAATTGGGTTATCACA+AGG | 0.601485 | 8:-73819010 | None:intergenic |
| GTCGAAGAAGGAGAAGTGGA+TGG | 0.606642 | 8:+73819510 | MsG0880046475.01.T01:CDS |
| TGAGAGGTGTCTTAGTAGCA+TGG | 0.606963 | 8:+73819705 | MsG0880046475.01.T01:CDS |
| ATCCGGGATTAGGGGATGAG+AGG | 0.611943 | 8:+73819620 | MsG0880046475.01.T01:CDS |
| TGGGCTCCTATGGGTCCGAA+AGG | 0.612377 | 8:+73819388 | MsG0880046475.01.T01:CDS |
| AGGATCAGATGGGTCAGCGT+CGG | 0.619968 | 8:-73818819 | None:intergenic |
| CTTTACCTCGAACAAAACTA+GGG | 0.624355 | 8:-73818952 | None:intergenic |
| ATGATTGAGAAGTATCATCC+GGG | 0.624752 | 8:+73819604 | MsG0880046475.01.T01:CDS |
| TGCTGTCGAAGAAGGAGAAG+TGG | 0.626321 | 8:+73819506 | MsG0880046475.01.T01:CDS |
| AACTGGTCTACAAACTCCAA+AGG | 0.628025 | 8:-73819835 | None:intergenic |
| GGTGTCTTAGTAGCATGGAG+AGG | 0.639013 | 8:+73819710 | MsG0880046475.01.T01:CDS |
| GGGTCCGAAAGGTCCTGTCA+GGG | 0.642339 | 8:+73819399 | MsG0880046475.01.T01:CDS |
| CGATAGTGCCACGTAAGACG+AGG | 0.645824 | 8:-73818712 | None:intergenic |
| GCCTTGTGATAACCCAATTG+GGG | 0.650246 | 8:+73819009 | MsG0880046475.01.T01:CDS |
| TACTAAGACACCTCTCAACA+GGG | 0.653180 | 8:-73819699 | None:intergenic |
| TGTCACACCCTGAAGTTGAG+TGG | 0.658397 | 8:+73819173 | MsG0880046475.01.T01:CDS |
| GTTAAAATCACTATCCTCTG+TGG | 0.662757 | 8:+73818677 | MsG0880046475.01.T01:CDS |
| TTGAGATCTGACGACCACGA+CGG | 0.662934 | 8:-73818640 | None:intergenic |
| AGTGCCACGTAAGACGAGGA+TGG | 0.666776 | 8:-73818708 | None:intergenic |
| ATGGTGATTACCCTGTTGAG+AGG | 0.676426 | 8:+73819689 | MsG0880046475.01.T01:CDS |
| CTCTACGGGTTCAGGCATCG+CGG | 0.682395 | 8:+73819766 | MsG0880046475.01.T01:CDS |
| GAAGTATCATCCGGGATTAG+GGG | 0.698377 | 8:+73819612 | MsG0880046475.01.T01:CDS |
| TTTGTGGGTTGTAAGCCGTG+TGG | 0.723212 | 8:+73819661 | MsG0880046475.01.T01:CDS |
| TAATCACCATAACTTCCACA+CGG | 0.726187 | 8:-73819676 | None:intergenic |
| GGATGGTGACGAAGCCACAG+AGG | 0.730125 | 8:-73818691 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATTGAAATTGTTTATAATA+TGG | + | Chr8:73819087-73819106 | MsG0880046475.01.T01:CDS | 15.0% |
| !! | TAAGTATGATGATTATAATT+TGG | + | Chr8:73819255-73819274 | MsG0880046475.01.T01:CDS | 15.0% |
| !! | ATTGATTATTGTAGATTACA+TGG | + | Chr8:73819064-73819083 | MsG0880046475.01.T01:CDS | 20.0% |
| !! | GATTATAATTTGGTTATTCA+TGG | + | Chr8:73819265-73819284 | MsG0880046475.01.T01:CDS | 20.0% |
| !! | TTGATTATTGTAGATTACAT+GGG | + | Chr8:73819065-73819084 | MsG0880046475.01.T01:CDS | 20.0% |
| !! | TTTCTAATTCTCTTAATCTT+CGG | - | Chr8:73819802-73819821 | None:intergenic | 20.0% |
| ! | TAATCATCATACTTAGACAA+AGG | - | Chr8:73819250-73819269 | None:intergenic | 25.0% |
| ! | TTACTATTTGCATGGTTATT+GGG | + | Chr8:73819555-73819574 | MsG0880046475.01.T01:CDS | 25.0% |
| ! | TTCTAATTCTCTTAATCTTC+GGG | - | Chr8:73819801-73819820 | None:intergenic | 25.0% |
| !! | ATACTGGTAGTTTTCTTTTT+AGG | + | Chr8:73819332-73819351 | MsG0880046475.01.T01:CDS | 25.0% |
| !!! | TGATGCTTTTTTTACTGATA+TGG | + | Chr8:73819213-73819232 | MsG0880046475.01.T01:CDS | 25.0% |
| AACAAATAATGATCCCCAAT+TGG | - | Chr8:73819025-73819044 | None:intergenic | 30.0% | |
| AACATTAACCTCCTAATCAT+AGG | - | Chr8:73819154-73819173 | None:intergenic | 30.0% | |
| AATGTCTTCGAATATCAAAC+TGG | - | Chr8:73819855-73819874 | None:intergenic | 30.0% | |
| ACAAATAATGATCCCCAATT+GGG | - | Chr8:73819024-73819043 | None:intergenic | 30.0% | |
| CTTACTATTTGCATGGTTAT+TGG | + | Chr8:73819554-73819573 | MsG0880046475.01.T01:CDS | 30.0% | |
| GAGAATTCTTACTATTTGCA+TGG | + | Chr8:73819547-73819566 | MsG0880046475.01.T01:CDS | 30.0% | |
| TAATATGGCTCATCTTGATA+TGG | + | Chr8:73819102-73819121 | MsG0880046475.01.T01:CDS | 30.0% | |
| TTTCAATTTCGCTGATAATC+AGG | + | Chr8:73819735-73819754 | MsG0880046475.01.T01:CDS | 30.0% | |
| ! | TTTGGATTTGCTTGATGTTT+GGG | + | Chr8:73819369-73819388 | MsG0880046475.01.T01:CDS | 30.0% |
| !! | ATTTTGACGGCTAATCTTAA+GGG | + | Chr8:73819436-73819455 | MsG0880046475.01.T01:CDS | 30.0% |
| !! | TTCTTTTTAGGAATTGTCAG+TGG | + | Chr8:73819344-73819363 | MsG0880046475.01.T01:CDS | 30.0% |
| !!! | TTCGATCATGTTTTGGTTAA+CGG | - | Chr8:73818768-73818787 | None:intergenic | 30.0% |
| AAATGAGACAGTTACTCCTT+TGG | + | Chr8:73819819-73819838 | MsG0880046475.01.T01:CDS | 35.0% | |
| AGTGGCATTTGGATTGAAAA+AGG | - | Chr8:73818861-73818880 | None:intergenic | 35.0% | |
| ATATGGAGTTAGCTGGTTAT+TGG | + | Chr8:73819119-73819138 | MsG0880046475.01.T01:CDS | 35.0% | |
| CTAAATTGCCTATGATTAGG+AGG | + | Chr8:73819143-73819162 | MsG0880046475.01.T01:CDS | 35.0% | |
| CTTTACCTCGAACAAAACTA+GGG | - | Chr8:73818955-73818974 | None:intergenic | 35.0% | |
| GTTAAAATCACTATCCTCTG+TGG | + | Chr8:73818677-73818696 | MsG0880046475.01.T01:CDS | 35.0% | |
| TAATCACCATAACTTCCACA+CGG | - | Chr8:73819679-73819698 | None:intergenic | 35.0% | |
| TATGGAGTTAGCTGGTTATT+GGG | + | Chr8:73819120-73819139 | MsG0880046475.01.T01:CDS | 35.0% | |
| TCTGCTCAAACAACAAATCA+GGG | - | Chr8:73819294-73819313 | None:intergenic | 35.0% | |
| TTCTGCTCAAACAACAAATC+AGG | - | Chr8:73819295-73819314 | None:intergenic | 35.0% | |
| TTTGATTCAGCCAAGCTTTA+CGG | - | Chr8:73818922-73818941 | None:intergenic | 35.0% | |
| ! | AAGGTGTTATCTTTGTCATC+AGG | - | Chr8:73818842-73818861 | None:intergenic | 35.0% |
| ! | ATATTTGTTGCTGTCGAAGA+AGG | + | Chr8:73819498-73819517 | MsG0880046475.01.T01:CDS | 35.0% |
| ! | CTCGAATTTTGCTTCTTACT+GGG | + | Chr8:73818975-73818994 | MsG0880046475.01.T01:CDS | 35.0% |
| ! | CTTTGGATTTGCTTGATGTT+TGG | + | Chr8:73819368-73819387 | MsG0880046475.01.T01:CDS | 35.0% |
| ! | GAACAAAACTAGGGTATTCA+GGG | - | Chr8:73818946-73818965 | None:intergenic | 35.0% |
| ! | TCATGGATTGCTATCAATAC+TGG | + | Chr8:73819316-73819335 | MsG0880046475.01.T01:CDS | 35.0% |
| ! | TGGTTTCTTCGATCATGTTT+TGG | - | Chr8:73818775-73818794 | None:intergenic | 35.0% |
| ! | TTTTGACGGCTAATCTTAAG+GGG | + | Chr8:73819437-73819456 | MsG0880046475.01.T01:CDS | 35.0% |
| !! | ATGATTGAGAAGTATCATCC+GGG | + | Chr8:73819604-73819623 | MsG0880046475.01.T01:CDS | 35.0% |
| !! | GATGATTGAGAAGTATCATC+CGG | + | Chr8:73819603-73819622 | MsG0880046475.01.T01:CDS | 35.0% |
| !! | GATTTTGACGGCTAATCTTA+AGG | + | Chr8:73819435-73819454 | MsG0880046475.01.T01:CDS | 35.0% |
| AATCAGGTGCTCAAACTCTA+CGG | + | Chr8:73819751-73819770 | MsG0880046475.01.T01:CDS | 40.0% | |
| ACCAAATCCACTCAACTTCA+GGG | - | Chr8:73819183-73819202 | None:intergenic | 40.0% | |
| ATTGGGTTATCACAAGGCTT+AGG | - | Chr8:73819007-73819026 | None:intergenic | 40.0% | |
| ATTTGCATGGTTATTGGGCT+GGG | + | Chr8:73819560-73819579 | MsG0880046475.01.T01:CDS | 40.0% | |
| CATCTTGATATGGAGTTAGC+TGG | + | Chr8:73819112-73819131 | MsG0880046475.01.T01:CDS | 40.0% | |
| CCCACAAAATGAGTCACAAA+CGG | - | Chr8:73819649-73819668 | None:intergenic | 40.0% | |
| CTTTGTCATCAGGATCAGAT+GGG | - | Chr8:73818832-73818851 | None:intergenic | 40.0% | |
| GCTTTACCTCGAACAAAACT+AGG | - | Chr8:73818956-73818975 | None:intergenic | 40.0% | |
| GGGCTAAATTGCCTATGATT+AGG | + | Chr8:73819140-73819159 | MsG0880046475.01.T01:CDS | 40.0% | |
| TACTAAGACACCTCTCAACA+GGG | - | Chr8:73819702-73819721 | None:intergenic | 40.0% | |
| TAGGAATTGTCAGTGGTCTT+TGG | + | Chr8:73819351-73819370 | MsG0880046475.01.T01:CDS | 40.0% | |
| TATTTGCATGGTTATTGGGC+TGG | + | Chr8:73819559-73819578 | MsG0880046475.01.T01:CDS | 40.0% | |
| TCTTTGTCATCAGGATCAGA+TGG | - | Chr8:73818833-73818852 | None:intergenic | 40.0% | |
| ! | AACTGGTCTACAAACTCCAA+AGG | - | Chr8:73819838-73819857 | None:intergenic | 40.0% |
| ! | AAGCCTTGTGATAACCCAAT+TGG | + | Chr8:73819007-73819026 | MsG0880046475.01.T01:CDS | 40.0% |
| ! | AATCCCAATCCGAGATTTTG+GGG | - | Chr8:73818895-73818914 | None:intergenic | 40.0% |
| ! | AGAATCCCAATCCGAGATTT+TGG | - | Chr8:73818897-73818916 | None:intergenic | 40.0% |
| ! | AGCCTTGTGATAACCCAATT+GGG | + | Chr8:73819008-73819027 | MsG0880046475.01.T01:CDS | 40.0% |
| ! | CCGTTTGTGACTCATTTTGT+GGG | + | Chr8:73819646-73819665 | MsG0880046475.01.T01:CDS | 40.0% |
| ! | CGAACAAAACTAGGGTATTC+AGG | - | Chr8:73818947-73818966 | None:intergenic | 40.0% |
| ! | GAATCCCAATCCGAGATTTT+GGG | - | Chr8:73818896-73818915 | None:intergenic | 40.0% |
| ! | GCTCGAATTTTGCTTCTTAC+TGG | + | Chr8:73818974-73818993 | MsG0880046475.01.T01:CDS | 40.0% |
| ! | TGTTGTTTGAGCAGAAGTCA+TGG | + | Chr8:73819299-73819318 | MsG0880046475.01.T01:CDS | 40.0% |
| !! | AGAAGTATCATCCGGGATTA+GGG | + | Chr8:73819611-73819630 | MsG0880046475.01.T01:CDS | 40.0% |
| !!! | GAATACCCTAGTTTTGTTCG+AGG | + | Chr8:73818947-73818966 | MsG0880046475.01.T01:CDS | 40.0% |
| ATCAGGTGCTCAAACTCTAC+GGG | + | Chr8:73819752-73819771 | MsG0880046475.01.T01:CDS | 45.0% | |
| ATGGTGATTACCCTGTTGAG+AGG | + | Chr8:73819689-73819708 | MsG0880046475.01.T01:CDS | 45.0% | |
| CACCAAATCCACTCAACTTC+AGG | - | Chr8:73819184-73819203 | None:intergenic | 45.0% | |
| CCAAGGGTAAAAGTGGCATT+TGG | - | Chr8:73818872-73818891 | None:intergenic | 45.0% | |
| CTACTAAGACACCTCTCAAC+AGG | - | Chr8:73819703-73819722 | None:intergenic | 45.0% | |
| CTTGATGTTTGGGCTCCTAT+GGG | + | Chr8:73819379-73819398 | MsG0880046475.01.T01:CDS | 45.0% | |
| GAAGGAGAAGTGGATGGATA+AGG | + | Chr8:73819516-73819535 | MsG0880046475.01.T01:CDS | 45.0% | |
| GCCTTGTGATAACCCAATTG+GGG | + | Chr8:73819009-73819028 | MsG0880046475.01.T01:CDS | 45.0% | |
| GTGTCTTAGTAGCATGGAGA+GGG | + | Chr8:73819711-73819730 | MsG0880046475.01.T01:CDS | 45.0% | |
| TCCCCAATTGGGTTATCACA+AGG | - | Chr8:73819013-73819032 | None:intergenic | 45.0% | |
| TGATCATCCGCTTCAAAAGC+CGG | - | Chr8:73819466-73819485 | None:intergenic | 45.0% | |
| TGTAAGCCGTGTGGAAGTTA+TGG | + | Chr8:73819670-73819689 | MsG0880046475.01.T01:CDS | 45.0% | |
| ! | ACCCTGAAGTTGAGTGGATT+TGG | + | Chr8:73819179-73819198 | MsG0880046475.01.T01:CDS | 45.0% |
| ! | AGAGGCGGGAAAGATTTTGA+CGG | + | Chr8:73819423-73819442 | MsG0880046475.01.T01:CDS | 45.0% |
| ! | CTGAAGTTGAGTGGATTTGG+TGG | + | Chr8:73819182-73819201 | MsG0880046475.01.T01:CDS | 45.0% |
| ! | GAAGTATCATCCGGGATTAG+GGG | + | Chr8:73819612-73819631 | MsG0880046475.01.T01:CDS | 45.0% |
| ! | GCCGTTTGTGACTCATTTTG+TGG | + | Chr8:73819645-73819664 | MsG0880046475.01.T01:CDS | 45.0% |
| !! | AGTTGAGTGGATTTGGTGGA+TGG | + | Chr8:73819186-73819205 | MsG0880046475.01.T01:CDS | 45.0% |
| !! | GAGAAGTATCATCCGGGATT+AGG | + | Chr8:73819610-73819629 | MsG0880046475.01.T01:CDS | 45.0% |
| !! | TGAGAGGTGTCTTAGTAGCA+TGG | + | Chr8:73819705-73819724 | MsG0880046475.01.T01:CDS | 45.0% |
| !! | TTGGAGTTTGTTGCTGTGGT+TGG | - | Chr8:73818611-73818630 | None:intergenic | 45.0% |
| !!! | CATGTTTTGGTTAACGGCGT+CGG | - | Chr8:73818762-73818781 | None:intergenic | 45.0% |
| !!! | CCAAATGCCACTTTTACCCT+TGG | + | Chr8:73818869-73818888 | MsG0880046475.01.T01:CDS | 45.0% |
| CTCGTCTTACGTGGCACTAT+CGG | + | Chr8:73818713-73818732 | MsG0880046475.01.T01:CDS | 50.0% | |
| GCTTGATGTTTGGGCTCCTA+TGG | + | Chr8:73819378-73819397 | MsG0880046475.01.T01:CDS | 50.0% | |
| GGCTAATCTTAAGGGGAGAC+CGG | + | Chr8:73819444-73819463 | MsG0880046475.01.T01:CDS | 50.0% | |
| GGGATTCTGACCGTAAAGCT+TGG | + | Chr8:73818909-73818928 | MsG0880046475.01.T01:CDS | 50.0% | |
| GGGTTATCACAAGGCTTAGG+AGG | - | Chr8:73819004-73819023 | None:intergenic | 50.0% | |
| GGTGTCTTAGTAGCATGGAG+AGG | + | Chr8:73819710-73819729 | MsG0880046475.01.T01:CDS | 50.0% | |
| GTCGAAGAAGGAGAAGTGGA+TGG | + | Chr8:73819510-73819529 | MsG0880046475.01.T01:CDS | 50.0% | |
| TACCCTTGGCCCCAAAATCT+CGG | + | Chr8:73818883-73818902 | MsG0880046475.01.T01:CDS | 50.0% | |
| TCCAACAGCAAAAACCGTCG+TGG | + | Chr8:73818626-73818645 | MsG0880046475.01.T01:CDS | 50.0% | |
| TCTTCCCTGACAGGACCTTT+CGG | - | Chr8:73819406-73819425 | None:intergenic | 50.0% | |
| TGCTCAAACTCTACGGGTTC+AGG | + | Chr8:73819758-73819777 | MsG0880046475.01.T01:CDS | 50.0% | |
| TGCTGTCGAAGAAGGAGAAG+TGG | + | Chr8:73819506-73819525 | MsG0880046475.01.T01:CDS | 50.0% | |
| TGGCCCCAAAATCTCGGATT+GGG | + | Chr8:73818889-73818908 | MsG0880046475.01.T01:CDS | 50.0% | |
| TGTCACACCCTGAAGTTGAG+TGG | + | Chr8:73819173-73819192 | MsG0880046475.01.T01:CDS | 50.0% | |
| TTGAGATCTGACGACCACGA+CGG | - | Chr8:73818643-73818662 | None:intergenic | 50.0% | |
| TTGGCCCCAAAATCTCGGAT+TGG | + | Chr8:73818888-73818907 | MsG0880046475.01.T01:CDS | 50.0% | |
| ! | TTTGGGGCCAAGGGTAAAAG+TGG | - | Chr8:73818879-73818898 | None:intergenic | 50.0% |
| ! | TTTGTGGGTTGTAAGCCGTG+TGG | + | Chr8:73819661-73819680 | MsG0880046475.01.T01:CDS | 50.0% |
| !! | ACCACGACGGTTTTTGCTGT+TGG | - | Chr8:73818630-73818649 | None:intergenic | 50.0% |
| !! | ATTGGGCTGGGTTGGTTGAT+CGG | + | Chr8:73819572-73819591 | MsG0880046475.01.T01:CDS | 50.0% |
| !! | GCTGTTGGAGTTTGTTGCTG+TGG | - | Chr8:73818615-73818634 | None:intergenic | 50.0% |
| !! | TGGGTTGGTTGATCGGTATG+AGG | + | Chr8:73819579-73819598 | MsG0880046475.01.T01:CDS | 50.0% |
| !!! | AATCCGAGATTTTGGGGCCA+AGG | - | Chr8:73818889-73818908 | None:intergenic | 50.0% |
| !!! | ATCCGAGATTTTGGGGCCAA+GGG | - | Chr8:73818888-73818907 | None:intergenic | 50.0% |
| ACAGGACCTTTCGGACCCAT+AGG | - | Chr8:73819397-73819416 | None:intergenic | 55.0% | |
| AGGATCAGATGGGTCAGCGT+CGG | - | Chr8:73818822-73818841 | None:intergenic | 55.0% | |
| AGTGCCACGTAAGACGAGGA+TGG | - | Chr8:73818711-73818730 | None:intergenic | 55.0% | |
| ATCCGGGATTAGGGGATGAG+AGG | + | Chr8:73819620-73819639 | MsG0880046475.01.T01:CDS | 55.0% | |
| ATCGGATCTCGGCGATGATG+CGG | - | Chr8:73818799-73818818 | None:intergenic | 55.0% | |
| CACAACAGAAGCAGCAGTGC+AGG | + | Chr8:73818581-73818600 | MsG0880046475.01.T01:CDS | 55.0% | |
| CACCTCTCATCCCCTAATCC+CGG | - | Chr8:73819625-73819644 | None:intergenic | 55.0% | |
| CGATAGTGCCACGTAAGACG+AGG | - | Chr8:73818715-73818734 | None:intergenic | 55.0% | |
| CGTCGGAGTCGGAAGAAATG+AGG | - | Chr8:73818745-73818764 | None:intergenic | 55.0% | |
| GAAAGGTCCTGTCAGGGAAG+AGG | + | Chr8:73819405-73819424 | MsG0880046475.01.T01:CDS | 55.0% | |
| GTCACCATCCTCGTCTTACG+TGG | + | Chr8:73818704-73818723 | MsG0880046475.01.T01:CDS | 55.0% | |
| ! | GCATGGTTATTGGGCTGGGT+TGG | + | Chr8:73819564-73819583 | MsG0880046475.01.T01:CDS | 55.0% |
| ! | TTGGTTAACGGCGTCGGAGT+CGG | - | Chr8:73818756-73818775 | None:intergenic | 55.0% |
| AGGTCCTGTCAGGGAAGAGG+CGG | + | Chr8:73819408-73819427 | MsG0880046475.01.T01:CDS | 60.0% | |
| CGGGATTAGGGGATGAGAGG+TGG | + | Chr8:73819623-73819642 | MsG0880046475.01.T01:CDS | 60.0% | |
| GATCTCGGCGATGATGCGGT+TGG | - | Chr8:73818795-73818814 | None:intergenic | 60.0% | |
| GGGTCCGAAAGGTCCTGTCA+GGG | + | Chr8:73819399-73819418 | MsG0880046475.01.T01:CDS | 60.0% | |
| TGGGCTCCTATGGGTCCGAA+AGG | + | Chr8:73819388-73819407 | MsG0880046475.01.T01:CDS | 60.0% | |
| TGGGTCCGAAAGGTCCTGTC+AGG | + | Chr8:73819398-73819417 | MsG0880046475.01.T01:CDS | 60.0% | |
| TTTCCCGCCTCTTCCCTGAC+AGG | - | Chr8:73819415-73819434 | None:intergenic | 60.0% | |
| ! | CAGATGGGTCAGCGTCGGAT+CGG | - | Chr8:73818817-73818836 | None:intergenic | 60.0% |
| ! | CTCTACGGGTTCAGGCATCG+CGG | + | Chr8:73819766-73819785 | MsG0880046475.01.T01:CDS | 60.0% |
| ! | GGATGGTGACGAAGCCACAG+AGG | - | Chr8:73818694-73818713 | None:intergenic | 60.0% |
| ! | GTCAGCGTCGGATCGGATCT+CGG | - | Chr8:73818810-73818829 | None:intergenic | 60.0% |
| !! | GGGGAGACCGGCTTTTGAAG+CGG | + | Chr8:73819456-73819475 | MsG0880046475.01.T01:CDS | 60.0% |
| GGTCCTGTCAGGGAAGAGGC+GGG | + | Chr8:73819409-73819428 | MsG0880046475.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 73818557 | 73819903 | 73818557 | ID=MsG0880046475.01;Name=MsG0880046475.01 |
| Chr8 | mRNA | 73818557 | 73819903 | 73818557 | ID=MsG0880046475.01.T01;Parent=MsG0880046475.01;Name=MsG0880046475.01.T01;_AED=0.43;_eAED=0.43;_QI=0|-1|0|1|-1|1|1|0|448 |
| Chr8 | exon | 73818557 | 73819903 | 73818557 | ID=MsG0880046475.01.T01:exon:5813;Parent=MsG0880046475.01.T01 |
| Chr8 | CDS | 73818557 | 73819903 | 73818557 | ID=MsG0880046475.01.T01:cds;Parent=MsG0880046475.01.T01 |
| Gene Sequence |
| Protein sequence |
