AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028523.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028523.01.T01 MTR_1g108820 48.031 254 94 6 26 241 132 385 1.24e-62 201
MsG0580028523.01.T01 MTR_1g108800 45.968 248 97 4 26 241 99 341 5.95e-59 190
MsG0580028523.01.T01 MTR_3g071850 39.130 253 116 6 24 238 153 405 3.36e-41 150
MsG0580028523.01.T01 MTR_6g045333 39.921 253 114 6 26 240 192 444 4.41e-41 146
MsG0580028523.01.T01 MTR_5g058100 40.711 253 115 10 24 243 135 385 2.04e-40 143
MsG0580028523.01.T01 MTR_5g045510 39.147 258 125 8 9 241 121 371 3.33e-40 142
MsG0580028523.01.T01 MTR_5g039490 43.541 209 103 6 42 241 173 375 1.82e-38 138
MsG0580028523.01.T01 MTR_5g073420 36.059 269 132 9 1 239 119 377 1.10e-37 136
MsG0580028523.01.T01 MTR_6g040270 37.903 248 119 10 26 241 136 380 2.71e-37 135
MsG0580028523.01.T01 MTR_5g045170 38.400 250 119 7 26 241 142 390 4.91e-37 134
MsG0580028523.01.T01 MTR_5g073370 40.083 242 118 5 27 241 138 379 9.56e-37 133
MsG0580028523.01.T01 MTR_6g022500 37.450 251 127 7 23 243 227 477 3.45e-36 134
MsG0580028523.01.T01 MTR_1089s0010 37.805 246 118 9 26 240 136 377 7.53e-36 131
MsG0580028523.01.T01 MTR_5g058000 38.800 250 113 10 23 240 132 373 1.08e-35 130
MsG0580028523.01.T01 MTR_5g007410 34.848 264 109 7 21 234 150 400 4.40e-35 130
MsG0580028523.01.T01 MTR_1g066830 36.111 252 126 9 24 240 134 385 3.64e-34 126
MsG0580028523.01.T01 MTR_1g085120 36.078 255 129 7 23 243 218 472 8.39e-33 124
MsG0580028523.01.T01 MTR_1g085120 36.078 255 129 7 23 243 293 547 1.51e-32 124
MsG0580028523.01.T01 MTR_5g073340 40.526 190 77 4 26 179 111 300 1.85e-32 120
MsG0580028523.01.T01 MTR_7g026500 36.800 250 118 8 24 239 149 392 1.23e-31 120
MsG0580028523.01.T01 MTR_3g095600 36.620 213 101 6 24 233 111 292 1.43e-31 118
MsG0580028523.01.T01 MTR_1g108820 49.219 128 54 2 26 142 132 259 2.18e-31 118
MsG0580028523.01.T01 MTR_5g073400 70.270 74 22 0 26 99 59 132 2.43e-29 107
MsG0580028523.01.T01 MTR_5g039450 36.975 238 97 10 42 239 131 355 5.31e-29 112
MsG0580028523.01.T01 MTR_2g036470 35.409 257 120 9 26 241 144 395 5.53e-29 113
MsG0580028523.01.T01 MTR_6g011460 36.471 255 128 9 23 245 172 424 6.67e-29 113
MsG0580028523.01.T01 MTR_0009s0080 36.726 226 102 8 23 209 144 367 5.76e-28 110
MsG0580028523.01.T01 MTR_7g055943 37.402 254 123 10 23 240 166 419 2.39e-27 108
MsG0580028523.01.T01 MTR_6g022520 35.271 258 132 8 23 245 59 316 1.78e-26 105
MsG0580028523.01.T01 MTR_4g039440 35.227 264 127 8 23 245 155 415 1.90e-26 106
MsG0580028523.01.T01 MTR_0543s0010 32.510 243 136 6 24 239 206 447 2.73e-26 106
MsG0580028523.01.T01 MTR_5g063950 34.263 251 124 9 26 239 113 359 5.04e-26 104
MsG0580028523.01.T01 MTR_5g039470 34.389 221 103 8 26 206 110 328 2.57e-25 102
MsG0580028523.01.T01 MTR_5g065100 37.281 228 127 7 24 243 131 350 4.39e-25 102
MsG0580028523.01.T01 MTR_5g054920 35.829 187 81 8 69 221 8 189 1.25e-24 97.1
MsG0580028523.01.T01 MTR_6g044572 34.568 243 129 9 23 243 155 389 3.22e-24 100
MsG0580028523.01.T01 MTR_7g034120 31.621 253 134 10 21 243 66 309 4.52e-24 98.2
MsG0580028523.01.T01 MTR_6g044560 35.391 243 127 10 23 243 331 565 1.29e-23 99.4
MsG0580028523.01.T01 MTR_5g031970 31.687 243 121 7 26 241 131 355 1.46e-23 97.8
MsG0580028523.01.T01 MTR_3g087260 31.984 247 137 9 24 239 208 454 3.45e-23 97.8
MsG0580028523.01.T01 MTR_6g022360 31.727 249 137 8 23 238 156 404 7.76e-23 96.3
MsG0580028523.01.T01 MTR_7g056020 30.992 242 134 7 24 234 127 366 2.92e-22 95.5
MsG0580028523.01.T01 MTR_7g088260 33.065 248 131 8 24 239 215 459 3.50e-22 95.1
MsG0580028523.01.T01 MTR_0492s0020 31.330 233 132 6 24 229 206 437 1.51e-21 92.8
MsG0580028523.01.T01 MTR_1g041245 33.074 257 129 11 21 240 134 384 2.33e-21 92.0
MsG0580028523.01.T01 MTR_7g075820 30.120 249 135 9 26 241 151 393 7.56e-20 87.8
MsG0580028523.01.T01 MTR_3g095630 36.747 166 77 8 97 236 17 180 7.87e-20 84.3
MsG0580028523.01.T01 MTR_7g098480 30.290 241 137 6 24 234 142 381 2.24e-19 87.0
MsG0580028523.01.T01 MTR_5g008950 27.953 254 140 7 21 239 117 362 5.93e-19 85.1
MsG0580028523.01.T01 MTR_3g107100 31.801 261 129 10 26 241 141 397 1.18e-18 84.7
MsG0580028523.01.T01 MTR_7g032380 30.802 237 130 11 21 240 135 354 1.19e-18 84.0
MsG0580028523.01.T01 MTR_5g076150 45.370 108 52 4 24 124 29 136 1.73e-18 82.0
MsG0580028523.01.T01 MTR_3g071790 36.022 186 79 8 56 203 19 202 3.16e-18 80.5
MsG0580028523.01.T01 MTR_1g085120 42.982 114 58 3 23 129 305 418 6.17e-18 82.8
MsG0580028523.01.T01 MTR_7g033915 31.280 211 117 8 56 240 155 363 1.15e-16 78.6
MsG0580028523.01.T01 MTR_7g007340 30.222 225 106 9 25 209 116 329 2.86e-16 77.4
MsG0580028523.01.T01 MTR_3g467400 29.167 240 126 8 26 239 143 364 1.02e-15 75.9
MsG0580028523.01.T01 MTR_5g024050 43.678 87 43 3 42 124 5 89 3.77e-14 67.0
MsG0580028523.01.T01 MTR_5g033200 32.143 140 73 4 97 214 12 151 1.67e-13 67.0
MsG0580028523.01.T01 MTR_1377s0010 35.156 128 60 5 108 212 3 130 3.06e-13 65.5
MsG0580028523.01.T01 MTR_5g044790 45.570 79 42 1 164 241 361 439 3.83e-13 68.6
MsG0580028523.01.T01 MTR_7g022105 29.614 233 124 9 24 220 172 400 5.02e-13 68.2
MsG0580028523.01.T01 MTR_1g059860 41.905 105 55 3 26 126 71 173 4.83e-12 65.1
MsG0580028523.01.T01 MTR_6g033095 29.744 195 101 6 19 209 22 184 1.25e-11 62.4
MsG0580028523.01.T01 MTR_5g061680 30.049 203 110 8 24 209 139 326 2.32e-11 63.2
MsG0580028523.01.T01 MTR_7g021990 28.862 246 133 8 24 230 171 413 3.52e-11 62.8
MsG0580028523.01.T01 MTR_7g021950 28.629 248 135 8 24 232 171 415 4.45e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 50 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATTGGCTTTGATAAATT+TGG 0.147022 5:-81813134 None:intergenic
ACTTCGTGAATTGCTTTAAA+TGG 0.183127 5:-81813172 None:intergenic
CTCGCTTAAGACCCTTTATT+TGG 0.202176 5:+81812976 MsG0580028523.01.T01:CDS
AACCAAAGACATCAAGAAAA+AGG 0.210148 5:-81815336 None:intergenic
AATTTCGGCAAGCTTCGTTC+TGG 0.270634 5:+81813025 MsG0580028523.01.T01:CDS
TCATGTTCGTTTCAAGAATA+AGG 0.271886 5:+81813000 MsG0580028523.01.T01:CDS
AACGAACATGATCCAAATAA+AGG 0.300151 5:-81812988 None:intergenic
TTCAAGAATAAGGAGAATTT+CGG 0.306847 5:+81813010 MsG0580028523.01.T01:CDS
AACATCAAATGCACGGATAT+TGG 0.309008 5:-81813149 None:intergenic
AAGAATTATCCTTGTGTCCT+AGG 0.339787 5:+81815280 MsG0580028523.01.T01:CDS
AGGTGAGACGAAATGCATTT+AGG 0.352773 5:-81815114 None:intergenic
TCGGCAAGACCCGTGCGATA+TGG 0.354330 5:+81811148 MsG0580028523.01.T01:CDS
ATGCATTTAGGAACAGACTT+TGG 0.377284 5:-81815102 None:intergenic
TGCATTTAGGAACAGACTTT+GGG 0.382200 5:-81815101 None:intergenic
CCTTTATCATACTCAGTTTG+AGG 0.384586 5:-81812925 None:intergenic
CCTCAAACTGAGTATGATAA+AGG 0.422611 5:+81812925 MsG0580028523.01.T01:CDS
ACAGGTTAAAGATTATTCAT+TGG 0.432610 5:+81811113 None:intergenic
TAGTCATTTCTTAAATCAAA+AGG 0.434849 5:+81815239 MsG0580028523.01.T01:CDS
ATTTCGGCAAGCTTCGTTCT+GGG 0.436006 5:+81813026 MsG0580028523.01.T01:CDS
CAAATTGAAAGTTTACAATC+AGG 0.456594 5:-81815309 None:intergenic
ACTATAAACTACGAAGGCTT+TGG 0.460176 5:+81815147 MsG0580028523.01.T01:CDS
AGTATGCAAATCCTCTAAAA+CGG 0.467018 5:-81813053 None:intergenic
ACGAACATGATCCAAATAAA+GGG 0.467669 5:-81812987 None:intergenic
GTATGCAAATCCTCTAAAAC+GGG 0.468396 5:-81813052 None:intergenic
GCTAACACCCTTGTCTTGTT+CGG 0.474538 5:-81813089 None:intergenic
ATATCACAGGAATTGATCTC+TGG 0.490348 5:-81814845 None:intergenic
ATAAACTACGAAGGCTTTGG+AGG 0.495434 5:+81815150 MsG0580028523.01.T01:CDS
AAATTCACTCCAAGAAAAGA+AGG 0.531668 5:-81815022 None:intergenic
TCATTGGTCTCTATTATAGT+CGG 0.538291 5:+81811129 MsG0580028523.01.T01:CDS
CAGGAATTGATCTCTGGTTG+AGG 0.543454 5:-81814839 None:intergenic
TCATATTTCCAACACTCTTG+TGG 0.553616 5:+81812901 MsG0580028523.01.T01:CDS
TTTGAGGACCACAAGAGTGT+TGG 0.553685 5:-81812909 None:intergenic
GACAAGGGTGTTAGCACAGG+AGG 0.558444 5:+81813097 MsG0580028523.01.T01:CDS
GGCTTTGATAAATTTGGACA+AGG 0.562330 5:-81813128 None:intergenic
CAAGACAAGGGTGTTAGCAC+AGG 0.563127 5:+81813094 MsG0580028523.01.T01:CDS
TCACTATACCGAACAAGACA+AGG 0.564773 5:+81813081 MsG0580028523.01.T01:CDS
TTACAATCAGGAGACATCCT+AGG 0.568281 5:-81815297 None:intergenic
CAAATAAAGGGTCTTAAGCG+AGG 0.592132 5:-81812975 None:intergenic
AAATAAAGGGTCTTAAGCGA+GGG 0.592203 5:-81812974 None:intergenic
CTGAGTATGATAAAGGTGGA+TGG 0.593288 5:+81812932 MsG0580028523.01.T01:CDS
CAAACTGAGTATGATAAAGG+TGG 0.593596 5:+81812928 MsG0580028523.01.T01:CDS
ATATTACCTTCCATATCGCA+CGG 0.600332 5:-81811158 None:intergenic
CAAGACCCGTGCGATATGGA+AGG 0.611442 5:+81811152 MsG0580028523.01.T01:CDS
TAAATGGAACATCAAATGCA+CGG 0.624779 5:-81813156 None:intergenic
TATTACCTTCCATATCGCAC+GGG 0.646540 5:-81811157 None:intergenic
AGTTTATAGTACATGATCTG+AGG 0.650310 5:-81815134 None:intergenic
AGGAGACATCCTAGGACACA+AGG 0.657481 5:-81815289 None:intergenic
TTCACTCCAAGAAAAGAAGG+AGG 0.664042 5:-81815019 None:intergenic
CACTATACCGAACAAGACAA+GGG 0.670736 5:+81813082 MsG0580028523.01.T01:CDS
TCATGTACTATAAACTACGA+AGG 0.673193 5:+81815141 MsG0580028523.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGTAAATTTATACAAT+AGG + Chr5:81811746-81811765 MsG0580028523.01.T01:intron 10.0%
!! TATTATATATAAAAGTTAAC+CGG - Chr5:81811626-81811645 None:intergenic 10.0%
!!! ATAAAATTTAGGTTAAAATT+AGG + Chr5:81811391-81811410 MsG0580028523.01.T01:intron 10.0%
!!! GAAGATTTATTAATTTTATT+AGG + Chr5:81811822-81811841 MsG0580028523.01.T01:intron 10.0%
!!! TAAAATTTAGGTTAAAATTA+GGG + Chr5:81811392-81811411 MsG0580028523.01.T01:intron 10.0%
!!! TTTAATTTTTATTTGTAACT+TGG + Chr5:81814774-81814793 MsG0580028523.01.T01:intron 10.0%
!! AACTTTAATAAATAAGAGAT+AGG + Chr5:81811435-81811454 MsG0580028523.01.T01:intron 15.0%
!! ACCTATTTAATGATATATAT+TGG - Chr5:81812388-81812407 None:intergenic 15.0%
!! ATAATATTCTAATGTAGAAA+AGG - Chr5:81813536-81813555 None:intergenic 15.0%
!! ATGAAATATGCATAAAATTT+AGG + Chr5:81811380-81811399 MsG0580028523.01.T01:intron 15.0%
!! ATTATATATAAAAGTTAACC+GGG - Chr5:81811625-81811644 None:intergenic 15.0%
!! CCTATTTAATGATATATATT+GGG - Chr5:81812387-81812406 None:intergenic 15.0%
!! TAAATTTATACAATAGGTTT+AGG + Chr5:81811752-81811771 MsG0580028523.01.T01:intron 15.0%
!! TATTTCAATAAAAGAGAAAT+AGG + Chr5:81812160-81812179 MsG0580028523.01.T01:intron 15.0%
!!! AAATTTTATGCATATTTCAT+GGG - Chr5:81811380-81811399 None:intergenic 15.0%
!!! CTTCTTTTTTTTTTTTTTGA+AGG - Chr5:81811497-81811516 None:intergenic 15.0%
!!! TAAATTTTATGCATATTTCA+TGG - Chr5:81811381-81811400 None:intergenic 15.0%
!!! TTTTCTACATTAGAATATTA+TGG + Chr5:81813535-81813554 MsG0580028523.01.T01:intron 15.0%
!! AAGAAAACTATAAATGAAGA+TGG - Chr5:81814898-81814917 None:intergenic 20.0%
!! ACCTATAAATAGACTTATAT+GGG - Chr5:81813468-81813487 None:intergenic 20.0%
!! ATAATAATAAGAGAAAGAGT+AGG + Chr5:81811685-81811704 MsG0580028523.01.T01:intron 20.0%
!! ATAGAAATTGTTTGAAGATT+TGG - Chr5:81814965-81814984 None:intergenic 20.0%
!! CCCAATATATATCATTAAAT+AGG + Chr5:81812384-81812403 MsG0580028523.01.T01:intron 20.0%
!! TAGAAATTGTTTGAAGATTT+GGG - Chr5:81814964-81814983 None:intergenic 20.0%
!! TAGTCATTTCTTAAATCAAA+AGG + Chr5:81815239-81815258 MsG0580028523.01.T01:CDS 20.0%
!! TCAAACAATTTCTATTAACA+AGG + Chr5:81814970-81814989 MsG0580028523.01.T01:intron 20.0%
!! TTAAAACAAGAAAACTAAGA+AGG - Chr5:81814210-81814229 None:intergenic 20.0%
!!! AAAACCTTTTTTTTTTGTCA+AGG - Chr5:81812418-81812437 None:intergenic 20.0%
!!! AATTGTTAAGTGCATATTTT+TGG - Chr5:81812362-81812381 None:intergenic 20.0%
!!! ATGTTGTTATTTGATTTTGT+TGG + Chr5:81813298-81813317 MsG0580028523.01.T01:intron 20.0%
!!! TTTTAAAAGCAATTTTGGTT+GGG - Chr5:81812596-81812615 None:intergenic 20.0%
! AAAAAAAGAAGAGAAAGAGT+AGG + Chr5:81811506-81811525 MsG0580028523.01.T01:intron 25.0%
! AAACAGTAAATCTATGCAAT+AGG + Chr5:81811569-81811588 MsG0580028523.01.T01:intron 25.0%
! AAACCAGAAAATAAGCATTA+TGG + Chr5:81811543-81811562 MsG0580028523.01.T01:intron 25.0%
! AAACTTAACCTAGACATTAA+TGG + Chr5:81814657-81814676 MsG0580028523.01.T01:intron 25.0%
! AACATCATATGTTAAGTACA+GGG + Chr5:81811318-81811337 MsG0580028523.01.T01:intron 25.0%
! AATGTAGAAAAGGCAAATAA+AGG - Chr5:81813526-81813545 None:intergenic 25.0%
! ACCCATATAAGTCTATTTAT+AGG + Chr5:81813464-81813483 MsG0580028523.01.T01:intron 25.0%
! AGAATATTATGGATGTTTCT+AGG + Chr5:81813546-81813565 MsG0580028523.01.T01:intron 25.0%
! ATAACAAATATTATGGCAAG+AGG - Chr5:81813824-81813843 None:intergenic 25.0%
! ATAGGTTTAGGAGAAAATTA+AGG + Chr5:81811587-81811606 MsG0580028523.01.T01:intron 25.0%
! ATATGGAAGGTAATATTTGA+CGG + Chr5:81811165-81811184 MsG0580028523.01.T01:intron 25.0%
! ATATTAAGAATCATAGACGT+TGG + Chr5:81811244-81811263 MsG0580028523.01.T01:intron 25.0%
! CAAATTGAAAGTTTACAATC+AGG - Chr5:81815312-81815331 None:intergenic 25.0%
! CACCTATAAATAGACTTATA+TGG - Chr5:81813469-81813488 None:intergenic 25.0%
! GAGACCAATAACAAATATTA+TGG - Chr5:81813831-81813850 None:intergenic 25.0%
! GTTATAGAAGAACATATAGT+TGG + Chr5:81814316-81814335 MsG0580028523.01.T01:intron 25.0%
! TAAATCTATGCAATAGGTTT+AGG + Chr5:81811575-81811594 MsG0580028523.01.T01:intron 25.0%
! TAACATATGATGTTACGTTA+CGG - Chr5:81811312-81811331 None:intergenic 25.0%
! TAACATCATATGTTAAGTAC+AGG + Chr5:81811317-81811336 MsG0580028523.01.T01:intron 25.0%
! TATAGCTAAAATATTCACTC+AGG + Chr5:81811782-81811801 MsG0580028523.01.T01:intron 25.0%
! TCTCAACGAAATCATTAAAT+AGG + Chr5:81812439-81812458 MsG0580028523.01.T01:intron 25.0%
! TGCAATGTCAATAATATTGA+AGG - Chr5:81813412-81813431 None:intergenic 25.0%
! TGTCATGGAAAATTATGTTA+TGG - Chr5:81811277-81811296 None:intergenic 25.0%
! TTAAACCAGAAAATAAGCAA+GGG + Chr5:81811720-81811739 MsG0580028523.01.T01:intron 25.0%
! TTAGCTCCAAAAATATTGAA+TGG + Chr5:81812463-81812482 MsG0580028523.01.T01:intron 25.0%
! TTCAAGAATAAGGAGAATTT+CGG + Chr5:81813010-81813029 MsG0580028523.01.T01:CDS 25.0%
! TTCGAAGATAAATCTGTTTA+TGG + Chr5:81812672-81812691 MsG0580028523.01.T01:intron 25.0%
! TTTAAACCAGAAAATAAGCA+AGG + Chr5:81811719-81811738 MsG0580028523.01.T01:intron 25.0%
!! TTTGTATATGTTTTGCAGAT+AGG + Chr5:81815057-81815076 MsG0580028523.01.T01:CDS 25.0%
!!! CATTTTAGTGGGAAATTATT+AGG - Chr5:81811863-81811882 None:intergenic 25.0%
!!! CTTGCCATAATATTTGTTAT+TGG + Chr5:81813824-81813843 MsG0580028523.01.T01:intron 25.0%
!!! GATATTGGCTTTGATAAATT+TGG - Chr5:81813137-81813156 None:intergenic 25.0%
!!! GCTTGTTTTAAAAGCAATTT+TGG - Chr5:81812601-81812620 None:intergenic 25.0%
!!! GTTTTAAAAGCAATTTTGGT+TGG - Chr5:81812597-81812616 None:intergenic 25.0%
!!! TAACCATAATGCTTATTTTC+TGG - Chr5:81811549-81811568 None:intergenic 25.0%
!!! TGGATTAAGTTTTGAAATAC+AGG - Chr5:81814878-81814897 None:intergenic 25.0%
!!! TTCTAGAACTAGAATAATCT+AGG + Chr5:81813500-81813519 MsG0580028523.01.T01:intron 25.0%
AAACAATGACACAACATGAT+AGG - Chr5:81812015-81812034 None:intergenic 30.0%
AAATTCACTCCAAGAAAAGA+AGG - Chr5:81815025-81815044 None:intergenic 30.0%
AACGAACATGATCCAAATAA+AGG - Chr5:81812991-81813010 None:intergenic 30.0%
AAGAAATAGGTTACCGATAA+TGG + Chr5:81812500-81812519 MsG0580028523.01.T01:intron 30.0%
AAGCTAGGTACTAATGAAAA+GGG + Chr5:81811344-81811363 MsG0580028523.01.T01:intron 30.0%
ACGAACATGATCCAAATAAA+GGG - Chr5:81812990-81813009 None:intergenic 30.0%
AGATTGTTCCATTAATGTCT+AGG - Chr5:81813583-81813602 None:intergenic 30.0%
AGGTAATATTTGACGGTAAT+AGG + Chr5:81811172-81811191 MsG0580028523.01.T01:intron 30.0%
AGTTTATAGTACATGATCTG+AGG - Chr5:81815137-81815156 None:intergenic 30.0%
ATTAGTGATGAGCATATTGT+AGG + Chr5:81813359-81813378 MsG0580028523.01.T01:intron 30.0%
CAACTTAACCTAGACATTAA+TGG + Chr5:81813572-81813591 MsG0580028523.01.T01:intron 30.0%
CTCCATTTATATTTATTGCC+TGG + Chr5:81814075-81814094 MsG0580028523.01.T01:intron 30.0%
CTCTCCTTGACAAAAAAAAA+AGG + Chr5:81812411-81812430 MsG0580028523.01.T01:intron 30.0%
GAAAACTAAGAAGGCTATAT+AGG - Chr5:81814201-81814220 None:intergenic 30.0%
GTCCAGGCAATAAATATAAA+TGG - Chr5:81814080-81814099 None:intergenic 30.0%
TAAATGGAACATCAAATGCA+CGG - Chr5:81813159-81813178 None:intergenic 30.0%
TATTCTCAGCAACATAATTG+TGG - Chr5:81813267-81813286 None:intergenic 30.0%
TCATGTACTATAAACTACGA+AGG + Chr5:81815141-81815160 MsG0580028523.01.T01:CDS 30.0%
TCATGTTCGTTTCAAGAATA+AGG + Chr5:81813000-81813019 MsG0580028523.01.T01:CDS 30.0%
TTAAGGCTAAAATATTCACC+CGG + Chr5:81811604-81811623 MsG0580028523.01.T01:intron 30.0%
TTATTGACATTGCATCTCAA+TGG + Chr5:81813418-81813437 MsG0580028523.01.T01:intron 30.0%
! AATGATTGCTGCATTTTAGA+GGG - Chr5:81811961-81811980 None:intergenic 30.0%
! ACTTCGTGAATTGCTTTAAA+TGG - Chr5:81813175-81813194 None:intergenic 30.0%
! AGTATGCAAATCCTCTAAAA+CGG - Chr5:81813056-81813075 None:intergenic 30.0%
! AGTTTTCGAAATATGCATCA+AGG - Chr5:81813695-81813714 None:intergenic 30.0%
! TAATGATTGCTGCATTTTAG+AGG - Chr5:81811962-81811981 None:intergenic 30.0%
! TACAAAATGCGCAACTTTTA+CGG + Chr5:81815199-81815218 MsG0580028523.01.T01:CDS 30.0%
! TCATTGGTCTCTATTATAGT+CGG + Chr5:81811129-81811148 MsG0580028523.01.T01:CDS 30.0%
! TTTTATGCATATTTCATGGG+TGG - Chr5:81811377-81811396 None:intergenic 30.0%
!! CATTTTAGAGGGAATTTGTT+AGG - Chr5:81811950-81811969 None:intergenic 30.0%
!! GGGAATTTGTTAGGTTAAAT+TGG - Chr5:81811941-81811960 None:intergenic 30.0%
!! TTTAACCCTTGCTTATTTTC+TGG - Chr5:81811728-81811747 None:intergenic 30.0%
!!! CTCTATATTTTTTCCAACAG+TGG - Chr5:81814397-81814416 None:intergenic 30.0%
!!! TAAGTGCATATTTTTGGTAG+CGG - Chr5:81812356-81812375 None:intergenic 30.0%
!!! TATTTTTGGTAGCGGTAAAA+TGG - Chr5:81812348-81812367 None:intergenic 30.0%
AAAAAGCTTCACCTCAAGTT+TGG + Chr5:81812759-81812778 MsG0580028523.01.T01:intron 35.0%
AAATAAAGGGTCTTAAGCGA+GGG - Chr5:81812977-81812996 None:intergenic 35.0%
AAATAGGAAAAACGAGCTAG+AGG + Chr5:81812176-81812195 MsG0580028523.01.T01:intron 35.0%
AACATCAAATGCACGGATAT+TGG - Chr5:81813152-81813171 None:intergenic 35.0%
AAGAATTATCCTTGTGTCCT+AGG + Chr5:81815280-81815299 MsG0580028523.01.T01:CDS 35.0%
AAGTTGCTAATCCTATCCAT+GGG - Chr5:81812537-81812556 None:intergenic 35.0%
AATAGGAAAAACGAGCTAGA+GGG + Chr5:81812177-81812196 MsG0580028523.01.T01:intron 35.0%
AATCTACTACATGAGTGACA+AGG - Chr5:81813982-81814001 None:intergenic 35.0%
AATGTACAGAACCAAACTTG+AGG - Chr5:81812773-81812792 None:intergenic 35.0%
ACAAATATTATGGCAAGAGG+TGG - Chr5:81813821-81813840 None:intergenic 35.0%
ACTATAAACTACGAAGGCTT+TGG + Chr5:81815147-81815166 MsG0580028523.01.T01:CDS 35.0%
AGATTCACATTCAACTAAGG+AGG - Chr5:81813894-81813913 None:intergenic 35.0%
AGCTAGGTACTAATGAAAAG+GGG + Chr5:81811345-81811364 MsG0580028523.01.T01:intron 35.0%
AGGAGATTCACATTCAACTA+AGG - Chr5:81813897-81813916 None:intergenic 35.0%
ATATCACAGGAATTGATCTC+TGG - Chr5:81814848-81814867 None:intergenic 35.0%
ATATTACCTTCCATATCGCA+CGG - Chr5:81811161-81811180 None:intergenic 35.0%
ATGCATTTAGGAACAGACTT+TGG - Chr5:81815105-81815124 None:intergenic 35.0%
ATGGTTGAAGATTTCTGACA+GGG + Chr5:81813924-81813943 MsG0580028523.01.T01:intron 35.0%
ATTCAACTAAGGAGGAAGAA+TGG - Chr5:81813886-81813905 None:intergenic 35.0%
ATTGCATCTCAATGGCTTAA+AGG + Chr5:81813426-81813445 MsG0580028523.01.T01:intron 35.0%
CAAACTGAGTATGATAAAGG+TGG + Chr5:81812928-81812947 MsG0580028523.01.T01:CDS 35.0%
CATGTAGTAGATTCTTGACA+GGG + Chr5:81813989-81814008 MsG0580028523.01.T01:intron 35.0%
CCTCAAACTGAGTATGATAA+AGG + Chr5:81812925-81812944 MsG0580028523.01.T01:CDS 35.0%
CCTTTATCATACTCAGTTTG+AGG - Chr5:81812928-81812947 None:intergenic 35.0%
CGCTCTTTGAACAAAGAAAT+AGG + Chr5:81812487-81812506 MsG0580028523.01.T01:intron 35.0%
GAAGCTAGGTACTAATGAAA+AGG + Chr5:81811343-81811362 MsG0580028523.01.T01:intron 35.0%
GAATGAAAAAGTCATCAGTG+AGG - Chr5:81811993-81812012 None:intergenic 35.0%
GAGATCAATTCCTGTGATAT+TGG + Chr5:81814848-81814867 MsG0580028523.01.T01:intron 35.0%
GGAAAAAATATAGAGCGTGA+GGG + Chr5:81814402-81814421 MsG0580028523.01.T01:intron 35.0%
GTCTATGACTCAAACACAAA+AGG - Chr5:81814268-81814287 None:intergenic 35.0%
GTTAAAATTAGGGCAACAGT+TGG + Chr5:81811402-81811421 MsG0580028523.01.T01:intron 35.0%
TAAGTTGCTAATCCTATCCA+TGG - Chr5:81812538-81812557 None:intergenic 35.0%
TAATCTTCAGCTGATCATCT+CGG + Chr5:81812866-81812885 MsG0580028523.01.T01:intron 35.0%
TCATATTTCCAACACTCTTG+TGG + Chr5:81812901-81812920 MsG0580028523.01.T01:CDS 35.0%
TCATGTAGTAGATTCTTGAC+AGG + Chr5:81813988-81814007 MsG0580028523.01.T01:intron 35.0%
TGCATTTAGGAACAGACTTT+GGG - Chr5:81815104-81815123 None:intergenic 35.0%
TGGAAAAAATATAGAGCGTG+AGG + Chr5:81814401-81814420 MsG0580028523.01.T01:intron 35.0%
TTGGATAATATAGAGCGTGA+GGG + Chr5:81813317-81813336 MsG0580028523.01.T01:intron 35.0%
TTTCGAAATATGCATCAAGG+AGG - Chr5:81813692-81813711 None:intergenic 35.0%
TTTGAAGATTTGGGCAATAC+TGG - Chr5:81814955-81814974 None:intergenic 35.0%
! AACCTAATGCAGCATTTTAG+TGG - Chr5:81811875-81811894 None:intergenic 35.0%
! ACAAAATGCGCAACTTTTAC+GGG + Chr5:81815200-81815219 MsG0580028523.01.T01:CDS 35.0%
! AGTTCAGTTTTTAACCGTTG+CGG + Chr5:81813192-81813211 MsG0580028523.01.T01:CDS 35.0%
! CTTAACTTGAGTACAAGCAT+AGG - Chr5:81814038-81814057 None:intergenic 35.0%
! GAGCGACCATTCAATATTTT+TGG - Chr5:81812472-81812491 None:intergenic 35.0%
! GGCTTTGATAAATTTGGACA+AGG - Chr5:81813131-81813150 None:intergenic 35.0%
! TTGAGTGTCTTATTAGCCAT+AGG + Chr5:81814117-81814136 MsG0580028523.01.T01:intron 35.0%
! TTTTCTTGAGACAAAGCACA+AGG - Chr5:81812283-81812302 None:intergenic 35.0%
!! AAAATCACTTTTGTGCGTGA+AGG + Chr5:81812204-81812223 MsG0580028523.01.T01:intron 35.0%
!! ACCTAATGCAGCATTTTAGT+GGG - Chr5:81811874-81811893 None:intergenic 35.0%
!! ACTATGAAGAGTATCAATGC+AGG - Chr5:81813768-81813787 None:intergenic 35.0%
!! GTATGCAAATCCTCTAAAAC+GGG - Chr5:81813055-81813074 None:intergenic 35.0%
!! TCAAGTTTGGTTCTGTACAT+TGG + Chr5:81812772-81812791 MsG0580028523.01.T01:intron 35.0%
AATCTTCAACCATGTCGACA+AGG - Chr5:81813917-81813936 None:intergenic 40.0%
ACAAGGTTTCTTCTGTTGTC+TGG + Chr5:81814987-81815006 MsG0580028523.01.T01:intron 40.0%
AGAAGGCTATATAGGAGTTC+AGG - Chr5:81814193-81814212 None:intergenic 40.0%
AGGTGAGACGAAATGCATTT+AGG - Chr5:81815117-81815136 None:intergenic 40.0%
AGTCTTCAACAAGACTAGCA+AGG - Chr5:81813853-81813872 None:intergenic 40.0%
AGTGATGAGCATATTGTAGG+AGG + Chr5:81813362-81813381 MsG0580028523.01.T01:intron 40.0%
ATAGGAAAAACGAGCTAGAG+GGG + Chr5:81812178-81812197 MsG0580028523.01.T01:intron 40.0%
ATGTGACACAGTAACTCATC+AGG - Chr5:81812561-81812580 None:intergenic 40.0%
CAAATAAAGGGTCTTAAGCG+AGG - Chr5:81812978-81812997 None:intergenic 40.0%
CACTATACCGAACAAGACAA+GGG + Chr5:81813082-81813101 MsG0580028523.01.T01:CDS 40.0%
CATAGGTCTTCGACATTAGT+CGG + Chr5:81814134-81814153 MsG0580028523.01.T01:intron 40.0%
CATGGTTGAAGATTTCTGAC+AGG + Chr5:81813923-81813942 MsG0580028523.01.T01:intron 40.0%
CTCGCTTAAGACCCTTTATT+TGG + Chr5:81812976-81812995 MsG0580028523.01.T01:CDS 40.0%
CTGAGTATGATAAAGGTGGA+TGG + Chr5:81812932-81812951 MsG0580028523.01.T01:CDS 40.0%
GAAAGAGTAGGAAGCAGATA+AGG + Chr5:81811518-81811537 MsG0580028523.01.T01:intron 40.0%
GAGGAGACACATTAGTGATA+TGG + Chr5:81813381-81813400 MsG0580028523.01.T01:intron 40.0%
GATGTTACGTTACGGTATCA+AGG - Chr5:81811304-81811323 None:intergenic 40.0%
GCTGAAGATTACTAGAGACA+TGG - Chr5:81812857-81812876 None:intergenic 40.0%
GGTAAAATGGACGGAAAACA+CGG - Chr5:81812335-81812354 None:intergenic 40.0%
GTACTCAAGTTAAGCATCAG+AGG + Chr5:81814044-81814063 MsG0580028523.01.T01:intron 40.0%
GTTGGATAATATAGAGCGTG+AGG + Chr5:81813316-81813335 MsG0580028523.01.T01:intron 40.0%
TACAGGATAGCCAATATCAC+AGG - Chr5:81814861-81814880 None:intergenic 40.0%
TAGTCGGACTTGAACTTTAG+AGG + Chr5:81814150-81814169 MsG0580028523.01.T01:intron 40.0%
TATGCATATTTCATGGGTGG+CGG - Chr5:81811374-81811393 None:intergenic 40.0%
TATTACCTTCCATATCGCAC+GGG - Chr5:81811160-81811179 None:intergenic 40.0%
TCACTATACCGAACAAGACA+AGG + Chr5:81813081-81813100 MsG0580028523.01.T01:CDS 40.0%
TCATCACTGCGATGATATAG+TGG + Chr5:81814922-81814941 MsG0580028523.01.T01:intron 40.0%
TCCCACTAAAATGCTGCATT+AGG + Chr5:81811870-81811889 MsG0580028523.01.T01:intron 40.0%
TCTTGTTGAAGACTTCTGCA+TGG + Chr5:81813859-81813878 MsG0580028523.01.T01:intron 40.0%
TTACAATCAGGAGACATCCT+AGG - Chr5:81815300-81815319 None:intergenic 40.0%
TTCACTCCAAGAAAAGAAGG+AGG - Chr5:81815022-81815041 None:intergenic 40.0%
TTTGAATAGAGCACAAGTCC+AGG - Chr5:81814096-81814115 None:intergenic 40.0%
! ATAAACTACGAAGGCTTTGG+AGG + Chr5:81815150-81815169 MsG0580028523.01.T01:CDS 40.0%
! GACTTGAACTTTAGAGGATC+GGG + Chr5:81814156-81814175 MsG0580028523.01.T01:intron 40.0%
! GATGTGAGTAATTTGCAGAG+TGG - Chr5:81812645-81812664 None:intergenic 40.0%
! GCAGTTTGAAATTCCACGAT+TGG + Chr5:81812796-81812815 MsG0580028523.01.T01:intron 40.0%
! GGACTTGAACTTTAGAGGAT+CGG + Chr5:81814155-81814174 MsG0580028523.01.T01:intron 40.0%
! GTTTTTAACCGTTGCGGTAA+TGG + Chr5:81813198-81813217 MsG0580028523.01.T01:intron 40.0%
! TTTTACGTCCATTACCGCAA+CGG - Chr5:81813209-81813228 None:intergenic 40.0%
!! ATGAAGAGTATCAATGCAGG+AGG - Chr5:81813765-81813784 None:intergenic 40.0%
!! TTTGGTAGCGGTAAAATGGA+CGG - Chr5:81812344-81812363 None:intergenic 40.0%
!!! AGCAATTTTGGTTGGGAGAA+AGG - Chr5:81812589-81812608 None:intergenic 40.0%
!!! GATTAGCCTCCTTCTTTTCT+TGG + Chr5:81815013-81815032 MsG0580028523.01.T01:intron 40.0%
AATTTCGGCAAGCTTCGTTC+TGG + Chr5:81813025-81813044 MsG0580028523.01.T01:CDS 45.0%
AGTTAAGCATCAGAGGTCAC+AGG + Chr5:81814051-81814070 MsG0580028523.01.T01:intron 45.0%
ATGCATATTTCATGGGTGGC+GGG - Chr5:81811373-81811392 None:intergenic 45.0%
ATTTCGGCAAGCTTCGTTCT+GGG + Chr5:81813026-81813045 MsG0580028523.01.T01:CDS 45.0%
CAAGCGACAAAAGCGAAGTA+AGG - Chr5:81812706-81812725 None:intergenic 45.0%
CAGGAATTGATCTCTGGTTG+AGG - Chr5:81814842-81814861 None:intergenic 45.0%
CGACTAATGTCGAAGACCTA+TGG - Chr5:81814136-81814155 None:intergenic 45.0%
CGTGAAGGTGAAGAAACTAG+GGG + Chr5:81812219-81812238 MsG0580028523.01.T01:intron 45.0%
GAGACATGGAGATTCTCTAG+AGG - Chr5:81812843-81812862 None:intergenic 45.0%
GCGTGAAGGTGAAGAAACTA+GGG + Chr5:81812218-81812237 MsG0580028523.01.T01:intron 45.0%
TAGGAAAAACGAGCTAGAGG+GGG + Chr5:81812179-81812198 MsG0580028523.01.T01:intron 45.0%
TCAAACAGAGTAGAGCCTTG+TGG + Chr5:81814231-81814250 MsG0580028523.01.T01:intron 45.0%
TCACTGCGATGATATAGTGG+AGG + Chr5:81814925-81814944 MsG0580028523.01.T01:intron 45.0%
TGCGTGAAGGTGAAGAAACT+AGG + Chr5:81812217-81812236 MsG0580028523.01.T01:intron 45.0%
TGTGAATCTCCTTGTCGACA+TGG + Chr5:81813905-81813924 MsG0580028523.01.T01:intron 45.0%
TTAAGTACAGGGACGAAGCT+AGG + Chr5:81811329-81811348 MsG0580028523.01.T01:intron 45.0%
! AAGGAGTACATGTAGCCACA+AGG - Chr5:81814249-81814268 None:intergenic 45.0%
! GCTAACACCCTTGTCTTGTT+CGG - Chr5:81813092-81813111 None:intergenic 45.0%
! TTGGTGCGCTGCATTTTAGA+TGG - Chr5:81811922-81811941 None:intergenic 45.0%
! TTTGAGGACCACAAGAGTGT+TGG - Chr5:81812912-81812931 None:intergenic 45.0%
!! CTTACTTCGCTTTTGTCGCT+TGG + Chr5:81812704-81812723 MsG0580028523.01.T01:intron 45.0%
!! GCAGAGTGGTGTCTACTTTT+TGG - Chr5:81812631-81812650 None:intergenic 45.0%
!!! CTCTAGAGGATGCTGTTTTG+CGG - Chr5:81812829-81812848 None:intergenic 45.0%
AGCTGCGTTCGGTCATTAAC+AGG - Chr5:81814368-81814387 None:intergenic 50.0%
AGGAGACATCCTAGGACACA+AGG - Chr5:81815292-81815311 None:intergenic 50.0%
AGTGGTATCAGAGCTGCGTT+CGG - Chr5:81814379-81814398 None:intergenic 50.0%
CGGTATCAAGGACGATGTCA+TGG - Chr5:81811292-81811311 None:intergenic 50.0%
GAAGGTGAAGAAACTAGGGG+AGG + Chr5:81812222-81812241 MsG0580028523.01.T01:intron 50.0%
GCTGCGTTCGGTCATTAACA+GGG - Chr5:81814367-81814386 None:intergenic 50.0%
GGAGCTGAGCTCTCCATTAT+CGG - Chr5:81812516-81812535 None:intergenic 50.0%
TTGCGGTTTCGATCCAATCG+TGG - Chr5:81812812-81812831 None:intergenic 50.0%
! CTTTAGAGGATCGGGCTGTT+AGG + Chr5:81814164-81814183 MsG0580028523.01.T01:intron 50.0%
! TTCTGGGTGTCCCGTTTTAG+AGG + Chr5:81813042-81813061 MsG0580028523.01.T01:CDS 50.0%
!! CAAGACAAGGGTGTTAGCAC+AGG + Chr5:81813094-81813113 MsG0580028523.01.T01:CDS 50.0%
AATGGAGAGCTCAGCTCCCA+TGG + Chr5:81812518-81812537 MsG0580028523.01.T01:intron 55.0%
AGAGCTCAGCTCCCATGGAT+AGG + Chr5:81812523-81812542 MsG0580028523.01.T01:intron 55.0%
ATAGAGCGTGAGGGAGCTAG+TGG + Chr5:81813326-81813345 MsG0580028523.01.T01:intron 55.0%
CAAGACCCGTGCGATATGGA+AGG + Chr5:81811152-81811171 MsG0580028523.01.T01:CDS 55.0%
TAGGGCAACAGTTGGCGTCT+GGG + Chr5:81811410-81811429 MsG0580028523.01.T01:intron 55.0%
TTAGGGCAACAGTTGGCGTC+TGG + Chr5:81811409-81811428 MsG0580028523.01.T01:intron 55.0%
! CGCAGCTCTGATACCACTGT+TGG + Chr5:81814381-81814400 MsG0580028523.01.T01:intron 55.0%
!! GACAAGGGTGTTAGCACAGG+AGG + Chr5:81813097-81813116 MsG0580028523.01.T01:CDS 55.0%
AGCGTGAGGGAGCTAGTGGT+AGG + Chr5:81813330-81813349 MsG0580028523.01.T01:intron 60.0%
TCGGCAAGACCCGTGCGATA+TGG + Chr5:81811148-81811167 MsG0580028523.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 81811117 81815347 81811117 ID=MsG0580028523.01;Name=MsG0580028523.01
Chr5 mRNA 81811117 81815347 81811117 ID=MsG0580028523.01.T01;Parent=MsG0580028523.01;Name=MsG0580028523.01.T01;_AED=0.41;_eAED=0.43;_QI=0|0|0|0.75|0|0|4|0|246
Chr5 exon 81811117 81811173 81811117 ID=MsG0580028523.01.T01:exon:33019;Parent=MsG0580028523.01.T01
Chr5 exon 81812896 81813213 81812896 ID=MsG0580028523.01.T01:exon:33020;Parent=MsG0580028523.01.T01
Chr5 exon 81814824 81814860 81814824 ID=MsG0580028523.01.T01:exon:33021;Parent=MsG0580028523.01.T01
Chr5 exon 81815019 81815347 81815019 ID=MsG0580028523.01.T01:exon:33022;Parent=MsG0580028523.01.T01
Chr5 CDS 81811117 81811173 81811117 ID=MsG0580028523.01.T01:cds;Parent=MsG0580028523.01.T01
Chr5 CDS 81812896 81813213 81812896 ID=MsG0580028523.01.T01:cds;Parent=MsG0580028523.01.T01
Chr5 CDS 81814824 81814860 81814824 ID=MsG0580028523.01.T01:cds;Parent=MsG0580028523.01.T01
Chr5 CDS 81815019 81815347 81815019 ID=MsG0580028523.01.T01:cds;Parent=MsG0580028523.01.T01
Gene Sequence

>MsG0580028523.01.T01

GTTAAAGATTATTCATTGGTCTCTATTATAGTCGGCAAGACCCGTGCGATATGGAAGTATTTTCATATTTCCAACACTCTTGTGGTCCTCAAACTGAGTATGATAAAGGTGGATGGTAATGTATCTGTTGATCTTCCCTCGCTTAAGACCCTTTATTTGGATCATGTTCGTTTCAAGAATAAGGAGAATTTCGGCAAGCTTCGTTCTGGGTGTCCCGTTTTAGAGGATTTGCATACTCGCATTCACTATACCGAACAAGACAAGGGTGTTAGCACAGGAGGCTTTGAAACCTTGTCCAAATTTATCAAAGCCAATATCCGTGCATTTGATGTTCCATTTAAAGCAATTCACGAAGTTCAGTTTTTAACCGTTGCGATGAAGAAGAAGCTTCCTCAACCAGAGATCAATTCCTCCTCCTTCTTTTCTTGGAGTGAATTTCATGAATCTTATTTTGTATATGTTTTGCAGATAGGATTCGATATAAACAGCAAATACCCAAAGTCTGTTCCTAAATGCATTTCGTCTCACCTCAGATCATGTACTATAAACTACGAAGGCTTTGGAGGTGAAGTTCAATTTGAAACATATATTTTACAAAATGCGCAACTTTTACGGGTCATGAAGATCAACATTAGTCATTTCTTAAATCAAAAGGCAAATCAGCATTCTTTAGAAGAATTATCCTTGTGTCCTAGGATGTCTCCTGATTGTAAACTTTCAATTTGTTTCCCTTTTTCTTGA
Protein sequence

>MsG0580028523.01.T01

VKDYSLVSIIVGKTRAIWKYFHISNTLVVLKLSMIKVDGNVSVDLPSLKTLYLDHVRFKNKENFGKLRSGCPVLEDLHTRIHYTEQDKGVSTGGFETLSKFIKANIRAFDVPFKAIHEVQFLTVAMKKKLPQPEINSSSFFSWSEFHESYFVYVLQIGFDINSKYPKSVPKCISSHLRSCTINYEGFGGEVQFETYILQNAQLLRVMKINISHFLNQKANQHSLEELSLCPRMSPDCKLSICFPFS*