AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038159.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038159.01.T01 MTR_3g107120 68.056 144 43 3 31 172 2 144 5.50e-56 183
MsG0780038159.01.T01 MTR_3g107120 95.652 46 2 0 172 217 258 303 6.53e-23 95.5
MsG0780038159.01.T01 MTR_3g107140 51.079 139 62 2 56 194 9 141 1.58e-36 127
MsG0780038159.01.T01 MTR_7g034090 39.914 233 78 7 38 217 3 226 1.76e-36 132
MsG0780038159.01.T01 MTR_3g107100 51.020 147 56 4 29 172 1 134 2.44e-34 126
MsG0780038159.01.T01 MTR_3g107100 65.957 47 16 0 172 218 250 296 1.44e-12 66.2
MsG0780038159.01.T01 MTR_3g107160 38.164 207 93 7 29 213 1 194 1.10e-26 105
MsG0780038159.01.T01 MTR_3g107160 73.913 46 12 0 172 217 250 295 4.58e-16 76.3
MsG0780038159.01.T01 MTR_2g007450 40.588 170 74 5 39 197 16 169 1.14e-23 97.8
MsG0780038159.01.T01 MTR_2g007530 34.231 260 78 9 39 218 19 265 1.45e-21 91.3
MsG0780038159.01.T01 MTR_4g098590 47.200 125 53 4 41 162 1 115 3.54e-21 90.5
MsG0780038159.01.T01 MTR_1g053025 37.561 205 93 7 39 218 2 196 6.86e-21 90.1
MsG0780038159.01.T01 MTR_7g034110 33.333 219 96 9 29 218 1 198 2.55e-19 85.1
MsG0780038159.01.T01 MTR_3g026920 41.667 132 59 3 39 162 19 140 6.12e-19 84.7
MsG0780038159.01.T01 MTR_2g007400 40.157 127 61 2 39 160 12 128 2.23e-18 83.2
MsG0780038159.01.T01 MTR_3g023630 39.844 128 57 3 39 162 8 119 1.19e-17 80.9
MsG0780038159.01.T01 MTR_2g007500 34.091 220 85 9 29 218 1 190 3.11e-17 79.3
MsG0780038159.01.T01 MTR_7g032380 33.333 219 94 9 29 218 1 196 4.79e-17 79.0
MsG0780038159.01.T01 MTR_1g492880 40.351 114 52 3 36 145 3 104 9.97e-17 73.2
MsG0780038159.01.T01 MTR_5g083890 41.270 126 57 3 38 156 5 120 2.45e-16 77.4
MsG0780038159.01.T01 MTR_1g492880 45.455 99 38 3 36 130 3 89 4.88e-16 71.2
MsG0780038159.01.T01 MTR_3g040700 39.456 147 67 5 30 171 34 163 9.87e-16 75.5
MsG0780038159.01.T01 MTR_8g014290 36.765 136 78 4 34 164 5 137 1.81e-15 71.2
MsG0780038159.01.T01 MTR_1g041245 34.706 170 83 6 29 193 1 147 2.63e-15 74.3
MsG0780038159.01.T01 MTR_7g033945 35.644 202 92 9 29 219 1 175 2.65e-15 71.6
MsG0780038159.01.T01 MTR_7g056287 35.484 186 92 8 38 218 2 164 5.04e-15 73.2
MsG0780038159.01.T01 MTR_2g005990 30.233 215 100 7 39 218 6 205 5.76e-15 73.2
MsG0780038159.01.T01 MTR_1g107385 39.200 125 60 3 38 156 31 145 5.81e-15 73.2
MsG0780038159.01.T01 MTR_7g033915 34.653 202 99 8 29 218 1 181 5.93e-15 73.2
MsG0780038159.01.T01 MTR_3g082890 34.783 184 91 5 39 218 17 175 6.21e-15 73.2
MsG0780038159.01.T01 MTR_3g082890 36.478 159 72 5 39 193 97 230 6.66e-15 73.2
MsG0780038159.01.T01 MTR_7g056277 33.824 204 103 9 20 218 244 420 7.03e-15 73.2
MsG0780038159.01.T01 MTR_3g108150 32.178 202 92 8 38 216 12 191 9.43e-15 72.4
MsG0780038159.01.T01 MTR_7g033990 37.594 133 63 5 29 158 1 116 1.44e-14 72.0
MsG0780038159.01.T01 MTR_3g099830 31.455 213 97 8 26 218 3 186 2.60e-14 71.2
MsG0780038159.01.T01 MTR_7g081290 32.961 179 85 6 39 213 18 165 2.92e-14 70.1
MsG0780038159.01.T01 MTR_5g073420 32.632 190 94 7 39 219 11 175 4.26e-14 70.5
MsG0780038159.01.T01 MTR_7g098570 32.127 221 104 10 26 219 4 205 4.29e-14 70.9
MsG0780038159.01.T01 MTR_7g098510 32.075 212 103 9 32 219 9 203 5.81e-14 70.5
MsG0780038159.01.T01 MTR_2g007360 31.053 190 96 6 39 218 12 176 6.22e-14 70.1
MsG0780038159.01.T01 MTR_7g056433 38.667 150 63 7 34 173 7 137 8.63e-14 69.7
MsG0780038159.01.T01 MTR_7g033940 40.157 127 48 5 41 160 96 201 1.14e-13 67.8
MsG0780038159.01.T01 MTR_7g083740 33.813 139 65 3 29 167 7 118 1.40e-13 68.9
MsG0780038159.01.T01 MTR_3g113782 50.000 62 24 1 31 85 2 63 2.08e-13 63.9
MsG0780038159.01.T01 MTR_7g033470 48.052 77 31 1 39 115 14 81 2.36e-13 65.5
MsG0780038159.01.T01 MTR_8g085430 29.778 225 101 9 29 218 1 203 2.37e-13 68.2
MsG0780038159.01.T01 MTR_3g108560 33.690 187 90 7 36 219 17 172 2.45e-13 68.6
MsG0780038159.01.T01 MTR_3g108560 34.054 185 88 7 38 219 19 172 2.79e-13 67.8
MsG0780038159.01.T01 MTR_1g108820 33.149 181 95 5 39 218 8 163 3.43e-13 68.2
MsG0780038159.01.T01 MTR_5g005690 36.774 155 70 5 41 190 23 154 3.83e-13 68.2
MsG0780038159.01.T01 MTR_7g056447 33.333 192 94 7 33 218 3 166 4.05e-13 67.4
MsG0780038159.01.T01 MTR_3g106960 68.085 47 14 1 172 217 63 109 4.31e-13 66.6
MsG0780038159.01.T01 MTR_4g047950 30.688 189 111 4 29 215 1 171 4.62e-13 67.8
MsG0780038159.01.T01 MTR_3g114200 35.714 140 61 5 39 170 19 137 5.56e-13 64.7
MsG0780038159.01.T01 MTR_1g108820 33.149 181 95 5 39 218 8 163 5.94e-13 67.4
MsG0780038159.01.T01 MTR_2g082800 35.338 133 70 4 32 162 20 138 6.35e-13 67.4
MsG0780038159.01.T01 MTR_4g080787 31.915 188 109 7 38 218 18 193 1.70e-12 66.2
MsG0780038159.01.T01 MTR_7g056430 32.461 191 97 7 33 218 3 166 1.73e-12 66.6
MsG0780038159.01.T01 MTR_7g056420 32.461 191 97 7 33 218 3 166 1.84e-12 66.2
MsG0780038159.01.T01 MTR_2g007100 68.182 44 14 0 39 82 2 45 2.07e-12 61.2
MsG0780038159.01.T01 MTR_3g110010 32.547 212 98 9 31 217 2 193 2.13e-12 66.2
MsG0780038159.01.T01 MTR_8g058970 30.472 233 111 8 28 215 2 228 2.16e-12 65.9
MsG0780038159.01.T01 MTR_3g109982 32.547 212 98 9 31 217 2 193 2.33e-12 65.9
MsG0780038159.01.T01 MTR_3g036250 37.857 140 65 4 37 171 3 125 2.36e-12 65.5
MsG0780038159.01.T01 MTR_3g087260 31.707 205 99 10 29 218 1 179 2.63e-12 65.5
MsG0780038159.01.T01 MTR_7g075820 34.615 130 68 3 38 162 5 122 2.68e-12 65.5
MsG0780038159.01.T01 MTR_7g098480 34.694 196 91 7 32 218 9 176 3.00e-12 65.5
MsG0780038159.01.T01 MTR_5g082930 45.679 81 34 1 41 121 17 87 3.97e-12 63.5
MsG0780038159.01.T01 MTR_2g082850 31.902 163 97 5 32 192 15 165 5.26e-12 64.7
MsG0780038159.01.T01 MTR_7g114710 32.093 215 96 10 30 216 4 196 6.08e-12 64.3
MsG0780038159.01.T01 MTR_3g105060 30.601 183 100 8 39 218 14 172 7.53e-12 63.9
MsG0780038159.01.T01 MTR_7g098590 54.386 57 24 1 32 86 9 65 8.06e-12 60.8
MsG0780038159.01.T01 MTR_8g014180 71.053 38 11 0 38 75 16 53 8.87e-12 58.9
MsG0780038159.01.T01 MTR_7g034115 32.093 215 96 9 29 215 1 193 1.03e-11 63.5
MsG0780038159.01.T01 MTR_7g026500 35.659 129 63 4 39 162 14 127 1.31e-11 63.5
MsG0780038159.01.T01 MTR_2g008310 30.964 197 107 6 39 218 2 186 1.41e-11 63.5
MsG0780038159.01.T01 MTR_8g445780 31.159 138 81 2 31 167 5 129 1.44e-11 63.2
MsG0780038159.01.T01 MTR_5g008950 33.333 156 76 5 41 193 1 131 1.48e-11 63.2
MsG0780038159.01.T01 MTR_8g014160 31.250 192 103 8 37 216 39 213 1.64e-11 63.2
MsG0780038159.01.T01 MTR_7g088260 29.648 199 97 8 38 213 90 268 1.99e-11 63.2
MsG0780038159.01.T01 MTR_0492s0020 29.146 199 103 6 38 218 85 263 2.12e-11 62.8
MsG0780038159.01.T01 MTR_0543s0010 29.146 199 103 6 38 218 85 263 2.14e-11 62.8
MsG0780038159.01.T01 MTR_7g056280 36.364 143 72 6 35 171 2 131 2.30e-11 62.8
MsG0780038159.01.T01 MTR_6g011460 29.557 203 94 8 39 213 46 227 2.39e-11 62.8
MsG0780038159.01.T01 MTR_1g067190 28.497 193 107 7 31 216 7 175 3.56e-11 62.0
MsG0780038159.01.T01 MTR_2g082880 35.000 160 75 6 38 192 9 144 3.81e-11 62.0
MsG0780038159.01.T01 MTR_7g115270 34.328 134 68 4 32 162 5 121 4.13e-11 62.0
MsG0780038159.01.T01 MTR_1g115245 28.426 197 106 7 27 201 14 197 5.07e-11 61.2
MsG0780038159.01.T01 MTR_2g083840 28.507 221 119 6 25 215 3 214 5.21e-11 61.6
MsG0780038159.01.T01 MTR_5g073370 39.326 89 44 1 39 127 5 83 6.97e-11 61.2
MsG0780038159.01.T01 MTR_5g045170 28.141 199 100 5 41 214 16 196 7.82e-11 61.2
MsG0780038159.01.T01 MTR_4g024770 54.167 48 20 1 30 75 13 60 8.40e-11 56.6
MsG0780038159.01.T01 MTR_2g082860 47.541 61 31 1 28 87 15 75 8.44e-11 58.2
MsG0780038159.01.T01 MTR_5g021550 34.483 145 72 6 38 171 18 150 8.83e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038159.01.T01 AT4G14103 32.673 202 102 8 39 218 8 197 1.35e-14 72.0
MsG0780038159.01.T01 AT4G14103 32.673 202 102 8 39 218 8 197 1.35e-14 72.0
MsG0780038159.01.T01 AT4G14103 32.673 202 102 8 39 218 8 197 1.64e-14 72.0
MsG0780038159.01.T01 AT3G59190 36.486 148 79 5 29 171 1 138 3.17e-14 71.2
MsG0780038159.01.T01 AT4G14096 32.843 204 97 10 39 218 8 195 3.71e-14 71.2
MsG0780038159.01.T01 AT4G14096 32.843 204 97 10 39 218 8 195 3.71e-14 71.2
MsG0780038159.01.T01 AT3G59190 36.486 148 79 5 29 171 1 138 4.50e-14 70.9
MsG0780038159.01.T01 AT1G48400 32.843 204 109 8 29 213 1 195 3.44e-13 68.2
MsG0780038159.01.T01 AT1G48400 32.843 204 109 8 29 213 1 195 3.91e-13 68.2
MsG0780038159.01.T01 AT3G59200 33.516 182 98 7 39 216 7 169 2.55e-12 65.9
MsG0780038159.01.T01 AT3G59200 33.516 182 98 7 39 216 7 169 3.37e-12 65.1
MsG0780038159.01.T01 AT5G02700 30.986 213 95 10 30 216 15 201 4.53e-12 65.1
MsG0780038159.01.T01 AT1G78750 28.708 209 112 8 33 216 12 208 6.63e-12 64.3
MsG0780038159.01.T01 AT1G78750 28.708 209 112 8 33 216 12 208 6.63e-12 64.3
MsG0780038159.01.T01 AT5G02920 30.000 210 102 8 24 215 18 200 7.69e-12 63.5
MsG0780038159.01.T01 AT3G28410 28.431 204 91 7 39 216 28 202 7.76e-12 64.3
MsG0780038159.01.T01 AT5G38392 32.704 159 90 6 39 193 2 147 1.19e-11 62.4
MsG0780038159.01.T01 AT5G41830 30.729 192 105 7 39 218 13 188 1.94e-11 63.2
MsG0780038159.01.T01 AT1G58310 30.570 193 108 7 36 215 5 184 1.95e-11 63.2
MsG0780038159.01.T01 AT2G42730 28.922 204 111 8 39 217 5 199 3.35e-11 62.4
MsG0780038159.01.T01 AT1G78760 30.114 176 94 5 24 193 1 153 4.81e-11 62.0
MsG0780038159.01.T01 AT3G58860 29.703 202 104 7 39 215 7 195 9.51e-11 61.2

Find 50 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTTCTTGATGACATTTC+TGG 0.086443 7:+41345929 None:intergenic
CAAACTCGTTAAACCTAAAA+AGG 0.159796 7:+41345699 None:intergenic
TTCACTCTATCAACTCTAAT+TGG 0.228909 7:-41344939 MsG0780038159.01.T01:CDS
AATTTACCAGATACCATTCT+AGG 0.313035 7:-41345881 MsG0780038159.01.T01:CDS
TTACAAGGATCATTTCCTTT+TGG 0.316894 7:-41346308 MsG0780038159.01.T01:CDS
TTCCACCTCAAGGTTGGATA+TGG 0.319497 7:-41345638 MsG0780038159.01.T01:CDS
GCTAGTGGCAACAACCTCTT+TGG 0.372407 7:+41345835 None:intergenic
TTGGGAGAAAAGAGAGAATA+TGG 0.376589 7:+41345858 None:intergenic
GAATTACGACCCGATCGAAT+TGG 0.379320 7:-41345735 MsG0780038159.01.T01:CDS
CCCTCTGTTGTCTTTGCCGT+TGG 0.389736 7:+41345757 None:intergenic
GCATTCCCAGTGTGGTCAAA+TGG 0.395491 7:-41345592 MsG0780038159.01.T01:CDS
CTTGAGGTGGAAACTCTTGA+TGG 0.421122 7:+41345649 None:intergenic
ATATGGCCTAGAATGGTATC+TGG 0.439179 7:+41345875 None:intergenic
CGAAGAGATGGAGGCATCAA+TGG 0.465005 7:-41345805 MsG0780038159.01.T01:CDS
ACATTCATGTTTAGACCAAA+AGG 0.466861 7:+41346293 None:intergenic
CATTCCCAGTGTGGTCAAAT+GGG 0.469316 7:-41345591 MsG0780038159.01.T01:CDS
TGGCAACAACCTCTTTGGTT+GGG 0.474325 7:+41345840 None:intergenic
AACAATTTACAGCACTTACA+AGG 0.495616 7:-41346323 None:intergenic
GTGGCAACAACCTCTTTGGT+TGG 0.498149 7:+41345839 None:intergenic
CATCAAGAGTTTCCACCTCA+AGG 0.500087 7:-41345648 MsG0780038159.01.T01:CDS
GGAATCTAGCTTGAACAAAA+CGG 0.502084 7:+41345670 None:intergenic
TCAAAACCTTGAGCTGGATG+AGG 0.502341 7:-41344878 MsG0780038159.01.T01:CDS
AAGAGTTTCCACCTCAAGGT+TGG 0.517707 7:-41345644 MsG0780038159.01.T01:CDS
AGAGAGAATATGGCCTAGAA+TGG 0.527418 7:+41345868 None:intergenic
CAACTTAGTCAAATTATGAA+AGG 0.528567 7:+41344966 None:intergenic
TAAGCTTCAAAACCTTGAGC+TGG 0.538687 7:-41344884 MsG0780038159.01.T01:CDS
TATTCATCATCCAATTCGAT+CGG 0.541608 7:+41345725 None:intergenic
CTAGCGTCCTATCGAAGAGA+TGG 0.541728 7:-41345817 MsG0780038159.01.T01:CDS
TTAGTCAAATTATGAAAGGT+AGG 0.542842 7:+41344970 None:intergenic
ATTCATCATCCAATTCGATC+GGG 0.546581 7:+41345726 None:intergenic
TGACCACACTGGGAATGCTA+CGG 0.548803 7:+41345597 None:intergenic
TCAACCCATTTGACCACACT+GGG 0.554090 7:+41345587 None:intergenic
AACAAACCTCATCCAGCTCA+AGG 0.572084 7:+41344872 None:intergenic
CAATACCATGTTGCACAACA+TGG 0.574646 7:+41345564 None:intergenic
ATCAAGAAGAACAAGAAGGA+GGG 0.574999 7:-41345918 MsG0780038159.01.T01:CDS
GTCAACCCATTTGACCACAC+TGG 0.581562 7:+41345586 None:intergenic
CTTGATATCAACTTAACCAA+CGG 0.582550 7:-41345773 MsG0780038159.01.T01:CDS
TACCATATCCAACCTTGAGG+TGG 0.584067 7:+41345636 None:intergenic
GATGCCTCCATCTCTTCGAT+AGG 0.594567 7:+41345810 None:intergenic
CAACATGGTATTGAGAGCCT+TGG 0.598576 7:-41345554 MsG0780038159.01.T01:CDS
CATCAAGAAGAACAAGAAGG+AGG 0.603622 7:-41345919 MsG0780038159.01.T01:CDS
ACCAACGGCAAAGACAACAG+AGG 0.626712 7:-41345758 MsG0780038159.01.T01:CDS
CCAACGGCAAAGACAACAGA+GGG 0.630942 7:-41345757 MsG0780038159.01.T01:CDS
GCGTCCTATCGAAGAGATGG+AGG 0.636910 7:-41345814 MsG0780038159.01.T01:CDS
TGTCATCAAGAAGAACAAGA+AGG 0.638376 7:-41345922 MsG0780038159.01.T01:CDS
TCTCTTCGATAGGACGCTAG+TGG 0.659918 7:+41345820 None:intergenic
GTTGACCATGTTGTGCAACA+TGG 0.661674 7:-41345569 MsG0780038159.01.T01:CDS
AAACCGTAGCATTCCCAGTG+TGG 0.678828 7:-41345600 MsG0780038159.01.T01:CDS
TAGTGAAAAGAGTGAGACCA+AGG 0.682227 7:+41345537 None:intergenic
AATTACCATATCCAACCTTG+AGG 0.697138 7:+41345633 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATACAGTCAAAAATA+AGG + Chr7:41346136-41346155 None:intergenic 15.0%
!! ATATGTAAATCTTCAAGAAT+TGG + Chr7:41345847-41345866 None:intergenic 20.0%
!! ATGAACAAACTTCTAAATAA+AGG + Chr7:41345783-41345802 None:intergenic 20.0%
!! CGATATATCTAAAAAAAACA+AGG + Chr7:41346173-41346192 None:intergenic 20.0%
!!! TTCTAAATAAAGGATTTTGA+GGG + Chr7:41345773-41345792 None:intergenic 20.0%
! AAACTCGTTAAACCTAAAAA+GGG + Chr7:41345482-41345501 None:intergenic 25.0%
! ACACTAAATCTTGATCATTT+AGG + Chr7:41345807-41345826 None:intergenic 25.0%
! ACTATACATAGAACTAAATC+AGG - Chr7:41346011-41346030 MsG0780038159.01.T01:intron 25.0%
! CAACTTAGTCAAATTATGAA+AGG + Chr7:41346216-41346235 None:intergenic 25.0%
! TTAGTCAAATTATGAAAGGT+AGG + Chr7:41346212-41346231 None:intergenic 25.0%
! TTTAGTGTAATTACAAGTGT+CGG - Chr7:41345050-41345069 MsG0780038159.01.T01:intron 25.0%
!! ATGATGAATATACCCTTTTT+AGG - Chr7:41345467-41345486 MsG0780038159.01.T01:intron 25.0%
!! CTTCTAAATAAAGGATTTTG+AGG + Chr7:41345774-41345793 None:intergenic 25.0%
AATTTACCAGATACCATTCT+AGG - Chr7:41345298-41345317 MsG0780038159.01.T01:intron 30.0%
ACATTCATGTTTAGACCAAA+AGG + Chr7:41344889-41344908 None:intergenic 30.0%
CAAACTCGTTAAACCTAAAA+AGG + Chr7:41345483-41345502 None:intergenic 30.0%
CTTGATATCAACTTAACCAA+CGG - Chr7:41345406-41345425 MsG0780038159.01.T01:intron 30.0%
TATTCATCATCCAATTCGAT+CGG + Chr7:41345457-41345476 None:intergenic 30.0%
TTCACTCTATCAACTCTAAT+TGG - Chr7:41346240-41346259 MsG0780038159.01.T01:intron 30.0%
TTCATAGTTCACAACACATT+TGG - Chr7:41345142-41345161 MsG0780038159.01.T01:intron 30.0%
TTGCTATATGAATACACCAA+TGG - Chr7:41346048-41346067 MsG0780038159.01.T01:intron 30.0%
! AAACAAGTTGAGAACAACAA+GGG + Chr7:41345710-41345729 None:intergenic 30.0%
! AAAGTAAAGCATTTGTGCTT+TGG + Chr7:41345950-41345969 None:intergenic 30.0%
! ATCTTTTATTCCATCACCAT+TGG + Chr7:41346067-41346086 None:intergenic 30.0%
! TTACAAGGATCATTTCCTTT+TGG - Chr7:41344871-41344890 MsG0780038159.01.T01:CDS 30.0%
!! AAATAAAGGATTTTGAGGGA+GGG + Chr7:41345769-41345788 None:intergenic 30.0%
!! TAAATAAAGGATTTTGAGGG+AGG + Chr7:41345770-41345789 None:intergenic 30.0%
AATTACCATATCCAACCTTG+AGG + Chr7:41345549-41345568 None:intergenic 35.0%
AGAAAAACCCTTCACAAACA+TGG + Chr7:41345734-41345753 None:intergenic 35.0%
ATAAGCTTTCACACTCTTGA+AGG + Chr7:41345906-41345925 None:intergenic 35.0%
ATCAAGAAGAACAAGAAGGA+GGG - Chr7:41345261-41345280 MsG0780038159.01.T01:intron 35.0%
ATTCATCATCCAATTCGATC+GGG + Chr7:41345456-41345475 None:intergenic 35.0%
CTACAACTAAGAATGCTAAC+AGG + Chr7:41345685-41345704 None:intergenic 35.0%
CTGTTAGCATTCTTAGTTGT+AGG - Chr7:41345683-41345702 MsG0780038159.01.T01:CDS 35.0%
TAAGCTTTCACACTCTTGAA+GGG + Chr7:41345905-41345924 None:intergenic 35.0%
TATGAATACACCAATGGTGA+TGG - Chr7:41346054-41346073 MsG0780038159.01.T01:intron 35.0%
TGTCATCAAGAAGAACAAGA+AGG - Chr7:41345257-41345276 MsG0780038159.01.T01:intron 35.0%
TTGGGAGAAAAGAGAGAATA+TGG + Chr7:41345324-41345343 None:intergenic 35.0%
TTGTTTGCCATGTTTGTGAA+GGG - Chr7:41345724-41345743 MsG0780038159.01.T01:CDS 35.0%
! CAAACAAGTTGAGAACAACA+AGG + Chr7:41345711-41345730 None:intergenic 35.0%
! GGAATCTAGCTTGAACAAAA+CGG + Chr7:41345512-41345531 None:intergenic 35.0%
! GTTCTTCTTGATGACATTTC+TGG + Chr7:41345253-41345272 None:intergenic 35.0%
! TGAAGGGTTTTTCTTCTGTT+AGG - Chr7:41345740-41345759 MsG0780038159.01.T01:CDS 35.0%
!! AATAAAGGATTTTGAGGGAG+GGG + Chr7:41345768-41345787 None:intergenic 35.0%
!! GATTTAGTGTTGCTTCTAGT+TGG - Chr7:41345817-41345836 MsG0780038159.01.T01:CDS 35.0%
!! GTGTAATCTGCTTTTACTTG+TGG - Chr7:41344907-41344926 MsG0780038159.01.T01:CDS 35.0%
!! TTGAAGGGTAAAAGAGTACT+TGG + Chr7:41345890-41345909 None:intergenic 35.0%
AAACGACACTTGTCTGATAC+CGG - Chr7:41345090-41345109 MsG0780038159.01.T01:intron 40.0%
AGAGAGAATATGGCCTAGAA+TGG + Chr7:41345314-41345333 None:intergenic 40.0%
ATATGGCCTAGAATGGTATC+TGG + Chr7:41345307-41345326 None:intergenic 40.0%
ATGAAGCACAGATACGGATA+CGG - Chr7:41344958-41344977 MsG0780038159.01.T01:CDS 40.0%
CAACCTATGAAGCACAGATA+CGG - Chr7:41344952-41344971 MsG0780038159.01.T01:CDS 40.0%
CAATACCATGTTGCACAACA+TGG + Chr7:41345618-41345637 None:intergenic 40.0%
CATCAAGAAGAACAAGAAGG+AGG - Chr7:41345260-41345279 MsG0780038159.01.T01:intron 40.0%
CTTGTTTGCCATGTTTGTGA+AGG - Chr7:41345723-41345742 MsG0780038159.01.T01:CDS 40.0%
TAAGCTTCAAAACCTTGAGC+TGG - Chr7:41346295-41346314 MsG0780038159.01.T01:CDS 40.0%
TAGTGAAAAGAGTGAGACCA+AGG + Chr7:41345645-41345664 None:intergenic 40.0%
TATCCGTATCTGTGCTTCAT+AGG + Chr7:41344958-41344977 None:intergenic 40.0%
! GAAGTCGAGACTTAGCATTT+TGG - Chr7:41345189-41345208 MsG0780038159.01.T01:intron 40.0%
! GCATTGTGAAGTGCTTTCAA+CGG + Chr7:41345985-41346004 None:intergenic 40.0%
!! GTTGAAAGCACTTCACAATG+CGG - Chr7:41345984-41346003 MsG0780038159.01.T01:intron 40.0%
!!! AGCTCAAGGTTTTGAAGCTT+AGG + Chr7:41346296-41346315 None:intergenic 40.0%
!!! GCTCAAGGTTTTGAAGCTTA+GGG + Chr7:41346295-41346314 None:intergenic 40.0%
AACAAACCTCATCCAGCTCA+AGG + Chr7:41346310-41346329 None:intergenic 45.0%
AACGACACTTGTCTGATACC+GGG - Chr7:41345091-41345110 MsG0780038159.01.T01:intron 45.0%
AAGAGTTTCCACCTCAAGGT+TGG - Chr7:41345535-41345554 MsG0780038159.01.T01:CDS 45.0%
CATCAAGAGTTTCCACCTCA+AGG - Chr7:41345531-41345550 MsG0780038159.01.T01:CDS 45.0%
CATTCCCAGTGTGGTCAAAT+GGG - Chr7:41345588-41345607 MsG0780038159.01.T01:CDS 45.0%
CTTGAGGTGGAAACTCTTGA+TGG + Chr7:41345533-41345552 None:intergenic 45.0%
GAATTACGACCCGATCGAAT+TGG - Chr7:41345444-41345463 MsG0780038159.01.T01:intron 45.0%
GTTGACCATGTTGTGCAACA+TGG - Chr7:41345610-41345629 MsG0780038159.01.T01:CDS 45.0%
TACCATATCCAACCTTGAGG+TGG + Chr7:41345546-41345565 None:intergenic 45.0%
TATGAAGCACAGACACTCCT+CGG + Chr7:41345128-41345147 None:intergenic 45.0%
TCAAAACCTTGAGCTGGATG+AGG - Chr7:41346301-41346320 MsG0780038159.01.T01:CDS 45.0%
TCAACCCATTTGACCACACT+GGG + Chr7:41345595-41345614 None:intergenic 45.0%
TGGCAACAACCTCTTTGGTT+GGG + Chr7:41345342-41345361 None:intergenic 45.0%
TTCCACCTCAAGGTTGGATA+TGG - Chr7:41345541-41345560 MsG0780038159.01.T01:CDS 45.0%
! CAACATGGTATTGAGAGCCT+TGG - Chr7:41345625-41345644 MsG0780038159.01.T01:CDS 45.0%
! CTCTTTTCTCCCAACCAAAG+AGG - Chr7:41345330-41345349 MsG0780038159.01.T01:intron 45.0%
!! GGGTAAAAGAGTACTTGGAG+TGG + Chr7:41345885-41345904 None:intergenic 45.0%
AAACCGTAGCATTCCCAGTG+TGG - Chr7:41345579-41345598 MsG0780038159.01.T01:CDS 50.0%
ACAGATACGGATACGGACAC+CGG - Chr7:41344965-41344984 MsG0780038159.01.T01:CDS 50.0%
ACCAACGGCAAAGACAACAG+AGG - Chr7:41345421-41345440 MsG0780038159.01.T01:intron 50.0%
CCAACGGCAAAGACAACAGA+GGG - Chr7:41345422-41345441 MsG0780038159.01.T01:intron 50.0%
CTAGCGTCCTATCGAAGAGA+TGG - Chr7:41345362-41345381 MsG0780038159.01.T01:intron 50.0%
GATGCCTCCATCTCTTCGAT+AGG + Chr7:41345372-41345391 None:intergenic 50.0%
GCATTCCCAGTGTGGTCAAA+TGG - Chr7:41345587-41345606 MsG0780038159.01.T01:CDS 50.0%
GCTAGTGGCAACAACCTCTT+TGG + Chr7:41345347-41345366 None:intergenic 50.0%
GTCAACCCATTTGACCACAC+TGG + Chr7:41345596-41345615 None:intergenic 50.0%
GTGGCAACAACCTCTTTGGT+TGG + Chr7:41345343-41345362 None:intergenic 50.0%
TCTCTTCGATAGGACGCTAG+TGG + Chr7:41345362-41345381 None:intergenic 50.0%
TGACCACACTGGGAATGCTA+CGG + Chr7:41345585-41345604 None:intergenic 50.0%
! TCCTCGGATTAGATGTGTCC+CGG + Chr7:41345112-41345131 None:intergenic 50.0%
!! CGAAGAGATGGAGGCATCAA+TGG - Chr7:41345374-41345393 MsG0780038159.01.T01:intron 50.0%
!! TACAAGTGTCGGTGTCGTGT+TGG - Chr7:41345061-41345080 MsG0780038159.01.T01:intron 50.0%
ACCGGGACACATCTAATCCG+AGG - Chr7:41345108-41345127 MsG0780038159.01.T01:intron 55.0%
CCCTCTGTTGTCTTTGCCGT+TGG + Chr7:41345425-41345444 None:intergenic 55.0%
GCGTCCTATCGAAGAGATGG+AGG - Chr7:41345365-41345384 MsG0780038159.01.T01:intron 55.0%
!! TGTCGGTGTCGTGTTGGTGT+CGG - Chr7:41345067-41345086 MsG0780038159.01.T01:intron 55.0%
TACGGACACCGGACACGACA+CGG - Chr7:41344976-41344995 MsG0780038159.01.T01:CDS 60.0%
CACCGGACACGACACGGACA+CGG - Chr7:41344982-41345001 MsG0780038159.01.T01:CDS 65.0%
GTCCGTGTCCGTGTCGTGTC+CGG + Chr7:41344987-41345006 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 41344870 41346331 41344870 ID=MsG0780038159.01;Name=MsG0780038159.01
Chr7 mRNA 41344870 41346331 41344870 ID=MsG0780038159.01.T01;Parent=MsG0780038159.01;Name=MsG0780038159.01.T01;_AED=0.39;_eAED=0.45;_QI=0|0|0|1|0.5|0.33|3|0|219
Chr7 exon 41346273 41346331 41346273 ID=MsG0780038159.01.T01:exon:15456;Parent=MsG0780038159.01.T01
Chr7 exon 41345517 41345970 41345517 ID=MsG0780038159.01.T01:exon:15455;Parent=MsG0780038159.01.T01
Chr7 exon 41344870 41345016 41344870 ID=MsG0780038159.01.T01:exon:15454;Parent=MsG0780038159.01.T01
Chr7 CDS 41346273 41346331 41346273 ID=MsG0780038159.01.T01:cds;Parent=MsG0780038159.01.T01
Chr7 CDS 41345517 41345970 41345517 ID=MsG0780038159.01.T01:cds;Parent=MsG0780038159.01.T01
Chr7 CDS 41344870 41345016 41344870 ID=MsG0780038159.01.T01:cds;Parent=MsG0780038159.01.T01
Gene Sequence

>MsG0780038159.01.T01

CTTACAAGGATCATTTCCTTTTGGTCTAAACATGAATGTGTAATCTGCTTTTACTTGTGCATTTCAAGTTTTGATACACCAGAAATGTCATCAAGAAGAACAAGAAGGAGGGATGACGTCATCAGCAATTTACCAGATACCATTCTAGGCCATATTCTCTCTTTTCTCCCAACCAAAGAGGTTGTTGCCACTAGCGTCCTATCGAAGAGATGGAGGCATCAATGGTGCTCAGTTCTTGATATCAACTTAACCAACGGCAAAGACAACAGAGGGAATTACGACCCGATCGAATTGGATGATGAATATACCCTTTTTAGGTTTAACGAGTTTGTGTTCTCCGTTTTGTTCAAGCTAGATTCCATCAAGAGTTTCCACCTCAAGGTTGGATATGGTAATTCTGCTCTTGAAAACCGTAGCATTCCCAGTGTGGTCAAATGGGTTGACCATGTTGTGCAACATGGTATTGAGAGCCTTGGTCTCACTCTTTTCACTAGCATTGATATGAAATTGCCTATATATCGAAGTTTTGATGAGATTCCTACCTTTCATAATTTGACTAAGTTGAAACTTCACTCTATCAACTCTAATTGGAATTTGTTAGTGCAAGTGCTCAATCATTGCCCTAAGCTTCAAAACCTTGAGCTGGATGAGGTTTGTTAA
Protein sequence

>MsG0780038159.01.T01

LTRIISFWSKHECVICFYLCISSFDTPEMSSRRTRRRDDVISNLPDTILGHILSFLPTKEVVATSVLSKRWRHQWCSVLDINLTNGKDNRGNYDPIELDDEYTLFRFNEFVFSVLFKLDSIKSFHLKVGYGNSALENRSIPSVVKWVDHVVQHGIESLGLTLFTSIDMKLPIYRSFDEIPTFHNLTKLKLHSINSNWNLLVQVLNHCPKLQNLELDEVC*