AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780037571.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037571.01.T01 MTR_3g107100 42.532 308 155 9 1 306 77 364 1.52e-64 209
MsG0780037571.01.T01 MTR_3g107120 44.027 293 146 7 10 300 93 369 9.37e-60 196
MsG0780037571.01.T01 MTR_3g107160 40.604 298 162 7 1 296 75 359 4.24e-58 192
MsG0780037571.01.T01 MTR_2g007450 38.941 321 148 13 1 289 82 386 3.44e-50 172
MsG0780037571.01.T01 MTR_2g007400 37.748 302 163 13 1 288 78 368 9.01e-47 162
MsG0780037571.01.T01 MTR_1g053025 37.908 306 152 13 1 288 69 354 5.18e-44 155
MsG0780037571.01.T01 MTR_1g107385 38.562 306 143 13 1 282 98 382 6.79e-44 155
MsG0780037571.01.T01 MTR_5g083890 38.111 307 160 12 1 288 72 367 9.04e-43 154
MsG0780037571.01.T01 MTR_2g008320 41.150 226 113 5 65 282 173 386 2.13e-40 146
MsG0780037571.01.T01 MTR_7g075820 35.811 296 154 10 10 288 83 359 4.41e-40 144
MsG0780037571.01.T01 MTR_3g026920 35.758 330 132 15 1 289 85 375 5.17e-40 145
MsG0780037571.01.T01 MTR_2g005990 35.836 293 159 13 10 288 83 360 4.42e-38 139
MsG0780037571.01.T01 MTR_2g008310 39.827 231 119 6 65 288 119 336 9.73e-38 138
MsG0780037571.01.T01 MTR_2g007500 37.255 255 132 7 27 265 83 325 3.27e-37 135
MsG0780037571.01.T01 MTR_4g098590 35.764 288 157 9 10 285 73 344 2.08e-36 134
MsG0780037571.01.T01 MTR_7g056280 40.571 175 100 3 116 288 367 539 3.07e-35 134
MsG0780037571.01.T01 MTR_3g099830 36.328 256 140 9 44 288 96 339 9.70e-35 130
MsG0780037571.01.T01 MTR_7g007080 35.741 263 153 8 39 298 107 356 1.48e-34 130
MsG0780037571.01.T01 MTR_7g007340 39.035 228 112 9 64 282 107 316 3.23e-34 128
MsG0780037571.01.T01 MTR_2g007360 36.585 246 120 8 64 288 107 337 9.34e-34 127
MsG0780037571.01.T01 MTR_5g073420 32.384 281 157 10 4 282 82 331 2.98e-32 123
MsG0780037571.01.T01 MTR_7g083740 34.363 259 146 7 35 289 93 331 2.45e-30 118
MsG0780037571.01.T01 MTR_7g034120 33.333 294 163 11 1 285 1 270 9.96e-30 115
MsG0780037571.01.T01 MTR_1g041245 32.423 293 174 11 1 288 74 347 1.24e-28 114
MsG0780037571.01.T01 MTR_5g058100 31.834 289 161 10 9 289 84 344 1.01e-27 111
MsG0780037571.01.T01 MTR_7g088260 32.302 291 167 9 4 288 157 423 1.64e-26 108
MsG0780037571.01.T01 MTR_0492s0020 32.082 293 159 10 3 288 151 410 2.12e-26 108
MsG0780037571.01.T01 MTR_0543s0010 32.082 293 159 10 3 288 151 410 2.55e-26 108
MsG0780037571.01.T01 MTR_3g106960 38.596 171 94 5 122 288 1 164 3.78e-26 103
MsG0780037571.01.T01 MTR_5g058000 31.915 282 162 7 9 289 83 335 6.05e-26 106
MsG0780037571.01.T01 MTR_3g108150 33.333 291 168 8 3 288 78 347 1.34e-25 105
MsG0780037571.01.T01 MTR_7g098510 32.685 257 154 8 38 288 108 351 4.24e-25 104
MsG0780037571.01.T01 MTR_7g033990 28.669 293 176 11 1 285 74 341 5.09e-25 104
MsG0780037571.01.T01 MTR_4g039440 29.967 307 180 10 1 296 95 377 9.68e-25 103
MsG0780037571.01.T01 MTR_7g098480 33.333 288 167 10 4 288 84 349 1.26e-24 103
MsG0780037571.01.T01 MTR_6g045333 32.593 270 148 9 34 288 156 406 1.54e-24 103
MsG0780037571.01.T01 MTR_3g108560 30.272 294 172 8 1 288 83 349 1.98e-24 102
MsG0780037571.01.T01 MTR_1g085120 31.783 258 143 9 37 282 189 425 4.60e-24 102
MsG0780037571.01.T01 MTR_1g085120 31.783 258 143 9 37 282 264 500 5.00e-24 102
MsG0780037571.01.T01 MTR_7g007370 37.991 229 119 9 62 282 91 304 6.35e-24 100
MsG0780037571.01.T01 MTR_7g034090 42.208 154 76 4 155 304 148 292 8.58e-24 100
MsG0780037571.01.T01 MTR_7g034090 46.591 88 33 2 1 88 75 148 1.07e-15 77.4
MsG0780037571.01.T01 MTR_7g075800 32.353 272 141 9 39 272 104 370 9.54e-24 102
MsG0780037571.01.T01 MTR_7g033915 30.169 295 151 13 1 285 74 323 9.82e-24 100
MsG0780037571.01.T01 MTR_7g032370 31.907 257 144 9 38 288 82 313 1.03e-23 99.8
MsG0780037571.01.T01 MTR_7g026500 29.963 267 152 10 39 289 111 358 2.54e-23 99.4
MsG0780037571.01.T01 MTR_5g073340 31.837 245 144 7 39 275 79 308 3.35e-23 97.8
MsG0780037571.01.T01 MTR_7g115270 29.085 306 179 9 2 288 76 362 5.38e-23 98.6
MsG0780037571.01.T01 MTR_7g098570 32.653 294 169 12 1 288 83 353 6.15e-23 99.0
MsG0780037571.01.T01 MTR_5g061680 28.159 277 150 8 4 280 82 309 1.25e-22 96.3
MsG0780037571.01.T01 MTR_1g066830 28.425 292 169 9 10 289 84 347 5.02e-22 95.5
MsG0780037571.01.T01 MTR_7g032380 29.412 255 135 7 38 288 104 317 5.45e-22 95.1
MsG0780037571.01.T01 MTR_6g022500 30.556 252 152 7 36 282 197 430 8.55e-22 95.5
MsG0780037571.01.T01 MTR_2g007090 35.714 210 97 6 86 288 81 259 9.36e-22 93.6
MsG0780037571.01.T01 MTR_5g054920 32.973 185 102 6 112 289 2 171 1.11e-21 90.9
MsG0780037571.01.T01 MTR_5g045170 30.534 262 157 7 36 288 106 351 2.86e-21 93.6
MsG0780037571.01.T01 MTR_0009s0080 31.987 297 163 13 36 312 114 391 3.31e-21 93.6
MsG0780037571.01.T01 MTR_3g087260 33.913 230 137 5 63 288 199 417 3.75e-21 93.6
MsG0780037571.01.T01 MTR_5g045510 31.955 266 133 10 35 288 103 332 4.85e-21 92.8
MsG0780037571.01.T01 MTR_5g007410 31.439 264 154 9 36 288 121 368 8.87e-21 92.4
MsG0780037571.01.T01 MTR_3g107140 51.887 106 48 3 35 140 94 196 9.24e-21 88.6
MsG0780037571.01.T01 MTR_6g040270 29.134 254 161 5 36 288 103 338 1.09e-20 91.7
MsG0780037571.01.T01 MTR_7g055943 34.100 261 149 10 26 280 124 367 1.38e-20 92.0
MsG0780037571.01.T01 MTR_7g056433 30.068 296 176 12 2 288 76 349 1.44e-20 91.3
MsG0780037571.01.T01 MTR_3g071850 30.224 268 159 8 34 289 119 370 2.35e-20 92.0
MsG0780037571.01.T01 MTR_2g007550 35.329 167 81 5 135 285 146 301 2.65e-20 90.1
MsG0780037571.01.T01 MTR_5g073370 30.667 225 142 5 45 265 104 318 9.34e-20 89.0
MsG0780037571.01.T01 MTR_5g013500 27.213 305 166 10 2 288 59 325 9.58e-20 89.0
MsG0780037571.01.T01 MTR_5g008950 29.075 227 148 4 64 288 112 327 1.88e-19 88.2
MsG0780037571.01.T01 MTR_7g034115 29.043 303 168 12 1 288 74 344 2.23e-19 87.8
MsG0780037571.01.T01 MTR_2g036470 29.389 262 158 7 38 289 113 357 2.57e-19 87.8
MsG0780037571.01.T01 MTR_3g082890 28.571 308 183 9 1 288 157 447 3.67e-19 88.2
MsG0780037571.01.T01 MTR_1g108820 30.279 251 141 10 68 302 126 358 9.66e-19 86.3
MsG0780037571.01.T01 MTR_6g029350 36.413 184 86 9 115 288 1 163 1.02e-18 84.0
MsG0780037571.01.T01 MTR_1089s0010 29.412 255 153 7 39 289 106 337 1.49e-18 85.5
MsG0780037571.01.T01 MTR_1g108800 32.075 265 142 11 36 289 66 303 1.70e-18 85.1
MsG0780037571.01.T01 MTR_7g056020 31.349 252 150 6 43 287 98 333 2.51e-18 85.9
MsG0780037571.01.T01 MTR_6g022520 30.282 284 162 8 9 282 10 267 6.26e-18 83.2
MsG0780037571.01.T01 MTR_3g109982 34.177 237 122 10 65 288 220 435 1.05e-17 84.0
MsG0780037571.01.T01 MTR_6g011460 29.924 264 150 8 28 282 135 372 1.27e-17 83.2
MsG0780037571.01.T01 MTR_3g094980 40.000 85 48 1 204 288 29 110 4.05e-17 77.8
MsG0780037571.01.T01 MTR_5g008920 30.196 255 161 7 36 288 104 343 3.38e-16 79.0
MsG0780037571.01.T01 MTR_1g085120 32.524 206 115 8 37 230 276 469 4.73e-16 78.6
MsG0780037571.01.T01 MTR_3g082890 25.882 340 188 9 1 288 77 404 6.24e-16 78.2
MsG0780037571.01.T01 MTR_7g056420 27.273 297 162 10 2 288 73 325 6.28e-16 79.0
MsG0780037571.01.T01 MTR_7g056430 27.273 297 162 10 2 288 73 325 6.90e-16 79.0
MsG0780037571.01.T01 MTR_5g031970 28.740 254 148 8 36 288 95 316 1.40e-15 76.6
MsG0780037571.01.T01 MTR_7g021990 30.534 262 167 8 52 306 151 404 2.23e-15 76.6
MsG0780037571.01.T01 MTR_5g039470 27.481 262 163 7 39 289 80 325 2.84e-15 75.5
MsG0780037571.01.T01 MTR_7g021950 30.534 262 167 8 52 306 151 404 3.07e-15 76.3
MsG0780037571.01.T01 MTR_3g105060 27.530 247 159 6 36 282 105 331 1.37e-14 73.9
MsG0780037571.01.T01 MTR_3g108560 30.085 236 139 7 1 230 83 298 1.59e-14 73.2
MsG0780037571.01.T01 MTR_6g022360 27.068 266 176 7 24 285 114 365 7.37e-14 72.0
MsG0780037571.01.T01 MTR_2g020180 30.526 190 102 7 106 288 12 178 1.47e-13 68.9
MsG0780037571.01.T01 MTR_7g034110 28.342 187 78 6 94 276 159 293 1.41e-12 67.8
MsG0780037571.01.T01 MTR_7g022105 28.626 262 172 7 52 306 152 405 1.71e-12 67.8
MsG0780037571.01.T01 MTR_2g007530 34.228 149 64 5 159 300 194 315 2.90e-12 67.0
MsG0780037571.01.T01 MTR_7g056277 31.754 211 126 7 73 282 389 582 3.10e-12 67.4
MsG0780037571.01.T01 MTR_4g080610 29.902 204 121 7 94 287 126 317 3.10e-12 67.0
MsG0780037571.01.T01 MTR_3g023630 27.381 252 159 8 36 282 100 332 3.49e-12 66.6
MsG0780037571.01.T01 MTR_7g114710 26.259 278 141 10 31 288 94 327 4.09e-12 66.6
MsG0780037571.01.T01 MTR_3g450920 35.928 167 80 7 1 163 77 220 7.41e-12 64.3
MsG0780037571.01.T01 MTR_2g007610 39.394 99 52 2 187 285 23 113 7.84e-12 63.2
MsG0780037571.01.T01 MTR_5g063950 28.085 235 138 8 68 289 107 323 1.05e-11 65.5
MsG0780037571.01.T01 MTR_3g467400 27.055 292 136 12 20 288 90 327 3.60e-11 63.9
MsG0780037571.01.T01 MTR_1377s0010 31.200 125 76 3 165 289 7 121 8.39e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037571.01.T01 AT4G00160 28.428 299 155 11 39 288 109 397 4.72e-15 75.9
MsG0780037571.01.T01 AT4G26340 24.921 317 168 8 23 285 77 377 4.49e-14 72.8
MsG0780037571.01.T01 AT3G26920 26.241 282 162 10 28 288 6 262 1.42e-12 67.4
MsG0780037571.01.T01 AT5G22730 33.333 99 65 1 37 135 119 216 3.87e-11 63.9
MsG0780037571.01.T01 AT5G22730 33.333 99 65 1 37 135 119 216 3.87e-11 63.9
MsG0780037571.01.T01 AT3G26920 25.163 306 174 10 28 288 6 301 4.16e-11 63.5
MsG0780037571.01.T01 AT3G26920 25.163 306 174 10 28 288 6 301 4.16e-11 63.5
MsG0780037571.01.T01 AT5G22730 33.333 99 65 1 37 135 119 216 4.95e-11 63.5

Find 63 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCATTGCGGAACAAATTT+TGG 0.101546 7:+28595572 None:intergenic
GATAACACTGATTGGCAATT+TGG 0.205731 7:+28596400 None:intergenic
TGATTGGCAATTTGGAATAT+TGG 0.233311 7:+28596408 None:intergenic
AACATAAGATCTCGAAGTTT+AGG 0.267358 7:+28596266 None:intergenic
TTAAGAGATGGAAGTAAAAC+TGG 0.277417 7:+28596317 None:intergenic
TCAAGGTGGAAAGTATTAAT+TGG 0.285485 7:+28596563 None:intergenic
ATCTCTTAAAACTCTTCATT+TGG 0.303656 7:-28596303 MsG0780037571.01.T01:CDS
GTAAATAAATCCTCAAGAAT+TGG 0.335589 7:+28596227 None:intergenic
GATCTTATGTTGTTGTTAAC+CGG 0.336323 7:-28596254 MsG0780037571.01.T01:CDS
ACATAAGATCTCGAAGTTTA+GGG 0.360375 7:+28596267 None:intergenic
CTGTCAGCACTTTCACCAAA+TGG 0.395129 7:-28596493 MsG0780037571.01.T01:CDS
TACAACAAAGTTCACCCATT+TGG 0.415069 7:+28596478 None:intergenic
CAATGTACCTACTTTGCGAT+TGG 0.419403 7:-28596078 MsG0780037571.01.T01:CDS
AAGCGCAAATAAACACCAAA+TGG 0.433043 7:+28595899 None:intergenic
TATCTCTCAGTAGTATCATC+GGG 0.438335 7:-28596434 MsG0780037571.01.T01:CDS
GCGCTTCTCTCCATCATAGT+TGG 0.461012 7:-28595882 MsG0780037571.01.T01:CDS
AGAATAAGATCAAGATCATA+AGG 0.465679 7:+28596530 None:intergenic
AGGATGAGGATGAAGAATTC+TGG 0.468722 7:-28595628 MsG0780037571.01.T01:CDS
ATCCTCAAGAATTGGACATC+CGG 0.482266 7:+28596235 None:intergenic
TCAATTTCCAATCGCAAAGT+AGG 0.482825 7:+28596071 None:intergenic
CATTTGGTGAAAGTGCTGAC+AGG 0.483089 7:+28596494 None:intergenic
AAACATCGACAAAGAACATT+GGG 0.486742 7:-28595600 MsG0780037571.01.T01:CDS
TTAAGAACTTCCAACTATGA+TGG 0.489750 7:+28595872 None:intergenic
TGGGTCAAGTTATGAAAAGT+AGG 0.504198 7:+28595919 None:intergenic
TTATCTCTCAGTAGTATCAT+CGG 0.512414 7:-28596435 MsG0780037571.01.T01:CDS
CAAGTTATGAAAAGTAGGAA+TGG 0.515588 7:+28595924 None:intergenic
CTGCAGGTGATAACACTGAT+TGG 0.519817 7:+28596392 None:intergenic
TGTCAGCACTTTCACCAAAT+GGG 0.520633 7:-28596492 MsG0780037571.01.T01:CDS
AACCGGATGTCCAATTCTTG+AGG 0.532154 7:-28596237 MsG0780037571.01.T01:CDS
GGATTTATTTACATTTAATG+TGG 0.540621 7:-28596216 MsG0780037571.01.T01:CDS
AAAACATCGACAAAGAACAT+TGG 0.547418 7:-28595601 MsG0780037571.01.T01:CDS
AAAGTATTAATTGGAAGTGC+GGG 0.547761 7:+28596572 None:intergenic
AGCGCAAATAAACACCAAAT+GGG 0.550782 7:+28595900 None:intergenic
GAAAGTATTAATTGGAAGTG+CGG 0.555333 7:+28596571 None:intergenic
TCTTGCGGAAATATATCCGC+AGG 0.561148 7:-28595443 MsG0780037571.01.T01:CDS
GAGAACCACAACGGTACTGC+AGG 0.564396 7:+28596376 None:intergenic
TTGACAGATCAAGCAGGATG+AGG 0.567348 7:-28595642 MsG0780037571.01.T01:intron
GATCTTATTCTCGATCCTCA+CGG 0.570255 7:-28596518 MsG0780037571.01.T01:CDS
CATAAGGATATGTAACATCA+AGG 0.571386 7:+28596546 None:intergenic
ATCACATGTAAGAGATTCGT+CGG 0.571968 7:+28596184 None:intergenic
GCAGCCGCAGCAAAATCCTC+AGG 0.580914 7:+28595416 None:intergenic
ATAGCAATCAATATCAGCAT+AGG 0.589155 7:+28596130 None:intergenic
ACATTGTGAACGGCTTCCAA+TGG 0.591999 7:+28596095 None:intergenic
CTAGCATAATCTGACCCCGT+CGG 0.601309 7:+28595507 None:intergenic
TATCACCTGCAGTACCGTTG+TGG 0.609775 7:-28596381 MsG0780037571.01.T01:CDS
GGGGTCAGATTATGCTAGCA+AGG 0.621379 7:-28595502 MsG0780037571.01.T01:CDS
CAAAGTAGGTACATTGTGAA+CGG 0.621830 7:+28596085 None:intergenic
ATTTGGTGAAAGTGCTGACA+GGG 0.625981 7:+28596495 None:intergenic
CATCGACAAAGAACATTGGG+TGG 0.626616 7:-28595597 MsG0780037571.01.T01:CDS
ATTTCCGCAAGAAAATCCGC+AGG 0.631722 7:+28595454 None:intergenic
TTTGCGATTGGAAATTGACA+AGG 0.632816 7:-28596066 MsG0780037571.01.T01:intron
AAGTTCTTAGGTGTAATGAA+AGG 0.636997 7:+28595552 None:intergenic
GCATTATTGACAGATCAAGC+AGG 0.639684 7:-28595648 MsG0780037571.01.T01:intron
AATCTCTTACATGTGATGAG+TGG 0.643816 7:-28596178 MsG0780037571.01.T01:CDS
AAAATCCTCAGGTGTTCCTG+CGG 0.659666 7:+28595427 None:intergenic
TTTAGTTTCTCAAGCCGACG+GGG 0.661978 7:-28595521 MsG0780037571.01.T01:CDS
AGGTGTAATGAAAGGCATTG+CGG 0.667836 7:+28595560 None:intergenic
ATAGTTAACAAACCTCATTG+AGG 0.685964 7:+28595809 None:intergenic
ATTAAGTTTGAGAACCACAA+CGG 0.696054 7:+28596367 None:intergenic
AAGGATATGTAACATCAAGG+TGG 0.697568 7:+28596549 None:intergenic
TATATCCGCAGGAACACCTG+AGG 0.698498 7:-28595432 MsG0780037571.01.T01:CDS
ATCTCTCAGTAGTATCATCG+GGG 0.704509 7:-28596433 MsG0780037571.01.T01:CDS
AAAGTGCTGACAGGGCCGTG+AGG 0.709366 7:+28596503 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAATGACTTTATTAAAT+GGG + Chr7:28596263-28596282 None:intergenic 15.0%
!! CTGAAAATGACTTTATTAAA+TGG + Chr7:28596264-28596283 None:intergenic 20.0%
!! GCACATAAAATAAAACATAA+AGG + Chr7:28596327-28596346 None:intergenic 20.0%
!! GGATTTATTTACATTTAATG+TGG - Chr7:28595777-28595796 MsG0780037571.01.T01:intron 20.0%
!! TAAAAAAATTGCAAGTTCTT+AGG + Chr7:28596456-28596475 None:intergenic 20.0%
!!! AATATCTCATCAAATTTTGT+TGG - Chr7:28596286-28596305 MsG0780037571.01.T01:CDS 20.0%
!!! CATTTAATAAAGTCATTTTC+AGG - Chr7:28596262-28596281 MsG0780037571.01.T01:CDS 20.0%
!!! CTTAATCGTTTTATTATTCA+AGG - Chr7:28595643-28595662 MsG0780037571.01.T01:intron 20.0%
! AGAATAAGATCAAGATCATA+AGG + Chr7:28595466-28595485 None:intergenic 25.0%
! ATCTCTTAAAACTCTTCATT+TGG - Chr7:28595690-28595709 MsG0780037571.01.T01:intron 25.0%
! GTAAATAAATCCTCAAGAAT+TGG + Chr7:28595769-28595788 None:intergenic 25.0%
! TAAAATTCTCAGGAAAAAAC+TGG + Chr7:28595988-28596007 None:intergenic 25.0%
! TATTAAATGGGAAGTTTCAT+TGG + Chr7:28596251-28596270 None:intergenic 25.0%
!! TTGTCGTTCTAAATGTTATA+GGG - Chr7:28596029-28596048 MsG0780037571.01.T01:intron 25.0%
!! TTTGTCGTTCTAAATGTTAT+AGG - Chr7:28596028-28596047 MsG0780037571.01.T01:intron 25.0%
!!! AAATGAAGAGTTTTAAGAGA+TGG + Chr7:28595691-28595710 None:intergenic 25.0%
!!! AATCGTTTTATTATTCAAGG+CGG - Chr7:28595646-28595665 MsG0780037571.01.T01:intron 25.0%
AAAACATCGACAAAGAACAT+TGG - Chr7:28596392-28596411 MsG0780037571.01.T01:CDS 30.0%
AAACATCGACAAAGAACATT+GGG - Chr7:28596393-28596412 MsG0780037571.01.T01:CDS 30.0%
AACATAAGATCTCGAAGTTT+AGG + Chr7:28595730-28595749 None:intergenic 30.0%
AAGTTCTTAGGTGTAATGAA+AGG + Chr7:28596444-28596463 None:intergenic 30.0%
ACATAAGATCTCGAAGTTTA+GGG + Chr7:28595729-28595748 None:intergenic 30.0%
ATAGCAATCAATATCAGCAT+AGG + Chr7:28595866-28595885 None:intergenic 30.0%
ATAGTTAACAAACCTCATTG+AGG + Chr7:28596187-28596206 None:intergenic 30.0%
ATTAAGTTTGAGAACCACAA+CGG + Chr7:28595629-28595648 None:intergenic 30.0%
CAAGTTATGAAAAGTAGGAA+TGG + Chr7:28596072-28596091 None:intergenic 30.0%
CATAAGGATATGTAACATCA+AGG + Chr7:28595450-28595469 None:intergenic 30.0%
TTAAGAACTTCCAACTATGA+TGG + Chr7:28596124-28596143 None:intergenic 30.0%
TTAAGAGATGGAAGTAAAAC+TGG + Chr7:28595679-28595698 None:intergenic 30.0%
TTATCTCTCAGTAGTATCAT+CGG - Chr7:28595558-28595577 MsG0780037571.01.T01:CDS 30.0%
! AAAGTATTAATTGGAAGTGC+GGG + Chr7:28595424-28595443 None:intergenic 30.0%
! CTATCGTTTTCATTTTCCAT+TGG - Chr7:28595882-28595901 MsG0780037571.01.T01:CDS 30.0%
! GATCTTATGTTGTTGTTAAC+CGG - Chr7:28595739-28595758 MsG0780037571.01.T01:intron 30.0%
! TGATTGGCAATTTGGAATAT+TGG + Chr7:28595588-28595607 None:intergenic 30.0%
! TTTTCATAACTTGACCCATT+TGG - Chr7:28596079-28596098 MsG0780037571.01.T01:CDS 30.0%
!! GAAAGTATTAATTGGAAGTG+CGG + Chr7:28595425-28595444 None:intergenic 30.0%
!! TCAAGGTGGAAAGTATTAAT+TGG + Chr7:28595433-28595452 None:intergenic 30.0%
AAATTGTCACACATCATGGT+TGG + Chr7:28596011-28596030 None:intergenic 35.0%
AAGCGCAAATAAACACCAAA+TGG + Chr7:28596097-28596116 None:intergenic 35.0%
AAGGATATGTAACATCAAGG+TGG + Chr7:28595447-28595466 None:intergenic 35.0%
AATCTCTTACATGTGATGAG+TGG - Chr7:28595815-28595834 MsG0780037571.01.T01:intron 35.0%
AGCGCAAATAAACACCAAAT+GGG + Chr7:28596096-28596115 None:intergenic 35.0%
ATCACATGTAAGAGATTCGT+CGG + Chr7:28595812-28595831 None:intergenic 35.0%
CAAAGTAGGTACATTGTGAA+CGG + Chr7:28595911-28595930 None:intergenic 35.0%
TACAACAAAGTTCACCCATT+TGG + Chr7:28595518-28595537 None:intergenic 35.0%
TATCTCTCAGTAGTATCATC+GGG - Chr7:28595559-28595578 MsG0780037571.01.T01:CDS 35.0%
TCAAAAACTTGACCTCAATG+AGG - Chr7:28596172-28596191 MsG0780037571.01.T01:CDS 35.0%
TCAATTTCCAATCGCAAAGT+AGG + Chr7:28595925-28595944 None:intergenic 35.0%
TGGGTCAAGTTATGAAAAGT+AGG + Chr7:28596077-28596096 None:intergenic 35.0%
TTTGCGATTGGAAATTGACA+AGG - Chr7:28595927-28595946 MsG0780037571.01.T01:CDS 35.0%
! GATAACACTGATTGGCAATT+TGG + Chr7:28595596-28595615 None:intergenic 35.0%
!! TCATGGTTGGTAAAATTCTC+AGG + Chr7:28595998-28596017 None:intergenic 35.0%
!!! AGGTCAAGTTTTTGAAGCTT+AGG + Chr7:28596167-28596186 None:intergenic 35.0%
!!! GGTCAAGTTTTTGAAGCTTA+GGG + Chr7:28596166-28596185 None:intergenic 35.0%
!!! TTTTTAGTTTCTCAAGCCGA+CGG - Chr7:28596470-28596489 MsG0780037571.01.T01:CDS 35.0%
AGGATGAGGATGAAGAATTC+TGG - Chr7:28596365-28596384 MsG0780037571.01.T01:CDS 40.0%
ATCCTCAAGAATTGGACATC+CGG + Chr7:28595761-28595780 None:intergenic 40.0%
ATCTCTCAGTAGTATCATCG+GGG - Chr7:28595560-28595579 MsG0780037571.01.T01:CDS 40.0%
CAATGTACCTACTTTGCGAT+TGG - Chr7:28595915-28595934 MsG0780037571.01.T01:CDS 40.0%
CGACAAATTGTCACACATCA+TGG + Chr7:28596015-28596034 None:intergenic 40.0%
GATCTTATTCTCGATCCTCA+CGG - Chr7:28595475-28595494 MsG0780037571.01.T01:CDS 40.0%
GCATTATTGACAGATCAAGC+AGG - Chr7:28596345-28596364 MsG0780037571.01.T01:CDS 40.0%
TGTCAGCACTTTCACCAAAT+GGG - Chr7:28595501-28595520 MsG0780037571.01.T01:CDS 40.0%
! GGCATTGCGGAACAAATTTT+GGG + Chr7:28596423-28596442 None:intergenic 40.0%
! TTTTCCTGCGGATTTTCTTG+CGG - Chr7:28596535-28596554 MsG0780037571.01.T01:CDS 40.0%
!! AGAATCTCTCGTTTTTCCTG+CGG - Chr7:28596523-28596542 MsG0780037571.01.T01:CDS 40.0%
!! AGGCATTGCGGAACAAATTT+TGG + Chr7:28596424-28596443 None:intergenic 40.0%
!! AGGTGTAATGAAAGGCATTG+CGG + Chr7:28596436-28596455 None:intergenic 40.0%
!! ATTTGGTGAAAGTGCTGACA+GGG + Chr7:28595501-28595520 None:intergenic 40.0%
!!! TTTTAGTTTCTCAAGCCGAC+GGG - Chr7:28596471-28596490 MsG0780037571.01.T01:CDS 40.0%
AAAATCCTCAGGTGTTCCTG+CGG + Chr7:28596569-28596588 None:intergenic 45.0%
AACCGGATGTCCAATTCTTG+AGG - Chr7:28595756-28595775 MsG0780037571.01.T01:intron 45.0%
ACATTGTGAACGGCTTCCAA+TGG + Chr7:28595901-28595920 None:intergenic 45.0%
ATTTCCGCAAGAAAATCCGC+AGG + Chr7:28596542-28596561 None:intergenic 45.0%
CATCGACAAAGAACATTGGG+TGG - Chr7:28596396-28596415 MsG0780037571.01.T01:CDS 45.0%
CTGCAGGTGATAACACTGAT+TGG + Chr7:28595604-28595623 None:intergenic 45.0%
CTGTCAGCACTTTCACCAAA+TGG - Chr7:28595500-28595519 MsG0780037571.01.T01:CDS 45.0%
TCTTGCGGAAATATATCCGC+AGG - Chr7:28596550-28596569 MsG0780037571.01.T01:CDS 45.0%
TTGACAGATCAAGCAGGATG+AGG - Chr7:28596351-28596370 MsG0780037571.01.T01:CDS 45.0%
! AACACCTGAGGATTTTGCTG+CGG - Chr7:28596573-28596592 MsG0780037571.01.T01:CDS 45.0%
! TTTAGTTTCTCAAGCCGACG+GGG - Chr7:28596472-28596491 MsG0780037571.01.T01:CDS 45.0%
!! CATTTGGTGAAAGTGCTGAC+AGG + Chr7:28595502-28595521 None:intergenic 45.0%
CTAGCATAATCTGACCCCGT+CGG + Chr7:28596489-28596508 None:intergenic 50.0%
GCGCTTCTCTCCATCATAGT+TGG - Chr7:28596111-28596130 MsG0780037571.01.T01:CDS 50.0%
GGGGTCAGATTATGCTAGCA+AGG - Chr7:28596491-28596510 MsG0780037571.01.T01:CDS 50.0%
TATATCCGCAGGAACACCTG+AGG - Chr7:28596561-28596580 MsG0780037571.01.T01:CDS 50.0%
TATCACCTGCAGTACCGTTG+TGG - Chr7:28595612-28595631 MsG0780037571.01.T01:CDS 50.0%
GAGAACCACAACGGTACTGC+AGG + Chr7:28595620-28595639 None:intergenic 55.0%
GCAGCCGCAGCAAAATCCTC+AGG + Chr7:28596580-28596599 None:intergenic 60.0%
!! AAAGTGCTGACAGGGCCGTG+AGG + Chr7:28595493-28595512 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 28595406 28596609 28595406 ID=MsG0780037571.01;Name=MsG0780037571.01
Chr7 mRNA 28595406 28596609 28595406 ID=MsG0780037571.01.T01;Parent=MsG0780037571.01;Name=MsG0780037571.01.T01;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|3|0|312
Chr7 exon 28596067 28596609 28596067 ID=MsG0780037571.01.T01:exon:9602;Parent=MsG0780037571.01.T01
Chr7 exon 28595822 28595965 28595822 ID=MsG0780037571.01.T01:exon:9601;Parent=MsG0780037571.01.T01
Chr7 exon 28595406 28595657 28595406 ID=MsG0780037571.01.T01:exon:9600;Parent=MsG0780037571.01.T01
Chr7 CDS 28596067 28596609 28596067 ID=MsG0780037571.01.T01:cds;Parent=MsG0780037571.01.T01
Chr7 CDS 28595822 28595965 28595822 ID=MsG0780037571.01.T01:cds;Parent=MsG0780037571.01.T01
Chr7 CDS 28595406 28595657 28595406 ID=MsG0780037571.01.T01:cds;Parent=MsG0780037571.01.T01
Gene Sequence

>MsG0780037571.01.T01

TTGCTCTCTCGAGATCCCGCACTTCCAATTAATACTTTCCACCTTGATGTTACATATCCTTATGATCTTGATCTTATTCTCGATCCTCACGGCCCTGTCAGCACTTTCACCAAATGGGTGAACTTTGTTGTACAACGTCGTGTTGAGTATCTTTATCTCTCAGTAGTATCATCGGGGCTCCAATATTCCAAATTGCCAATCAGTGTTATCACCTGCAGTACCGTTGTGGTTCTCAAACTTAATCGTTTTATTATTCAAGGCGGTTTTTCTCCAGTTTTACTTCCATCTCTTAAAACTCTTCATTTGGAAGATAGTTCTTTCCCTAAACTTCGAGATCTTATGTTGTTGTTAACCGGATGTCCAATTCTTGAGGATTTATTTACATTTAATGTGGTGTTTGATTCCGACGAATCTCTTACATGTGATGAGTGGAAGATCTTTTGCTTAAGTAACTTGACCTATGCTGATATTGATTGCTATCGTTTTCATTTTCCATTGGAAGCCGTTCACAATGTACCTACTTTGCGATTGGAAATTGACAAGGGTTATTGTCGTAATGATTCCATTCCTACTTTTCATAACTTGACCCATTTGGTGTTTATTTGCGCTTCTCTCCATCATAGTTGGAAGTTCTTAATACAAGTTGTCAATCACTGCCCTAAGCTTCAAAAACTTGACCTCAATGAGATCAAGCAGGATGAGGATGAAGAATTCTGGACTAAAAACATCGACAAAGAACATTGGGTGGACCCAAAATTTGTTCCGCAATGCCTTTCATTACACCTAAGAACTTGCAATTTTTTTAGTTTCTCAAGCCGACGGGGTCAGATTATGCTAGCAAGGTACACTACTAGAATCTCTCGTTTTTCCTGCGGATTTTCTTGCGGAAATATATCCGCAGGAACACCTGAGGATTTTGCTGCGGCTGCGATTAGTTAA
Protein sequence

>MsG0780037571.01.T01

LLSRDPALPINTFHLDVTYPYDLDLILDPHGPVSTFTKWVNFVVQRRVEYLYLSVVSSGLQYSKLPISVITCSTVVVLKLNRFIIQGGFSPVLLPSLKTLHLEDSSFPKLRDLMLLLTGCPILEDLFTFNVVFDSDESLTCDEWKIFCLSNLTYADIDCYRFHFPLEAVHNVPTLRLEIDKGYCRNDSIPTFHNLTHLVFICASLHHSWKFLIQVVNHCPKLQKLDLNEIKQDEDEEFWTKNIDKEHWVDPKFVPQCLSLHLRTCNFFSFSSRRGQIMLARYTTRISRFSCGFSCGNISAGTPEDFAAAAIS*