Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780038463.01.T01 | MCH84842.1 | 69.355 | 186 | 56 | 1 | 24 | 208 | 1 | 186 | 2.41E-87 | 267 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780038463.01.T01 | A0A392MBG3 | 69.355 | 186 | 56 | 1 | 24 | 208 | 1 | 186 | 1.15e-87 | 267 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780038463.01.T01 | MTR_7g056280 | 50.244 | 205 | 98 | 2 | 4 | 204 | 368 | 572 | 1.30e-63 | 208 |
MsG0780038463.01.T01 | MTR_3g107100 | 46.606 | 221 | 98 | 3 | 1 | 204 | 180 | 397 | 1.78e-52 | 174 |
MsG0780038463.01.T01 | MTR_3g107120 | 44.076 | 211 | 113 | 2 | 1 | 210 | 190 | 396 | 2.03e-52 | 174 |
MsG0780038463.01.T01 | MTR_7g007080 | 48.815 | 211 | 88 | 6 | 4 | 205 | 180 | 379 | 6.39e-49 | 165 |
MsG0780038463.01.T01 | MTR_7g034090 | 54.190 | 179 | 67 | 5 | 41 | 211 | 147 | 318 | 4.25e-48 | 164 |
MsG0780038463.01.T01 | MTR_3g107160 | 44.608 | 204 | 110 | 2 | 1 | 204 | 182 | 382 | 9.83e-48 | 162 |
MsG0780038463.01.T01 | MTR_2g007450 | 43.439 | 221 | 105 | 7 | 1 | 205 | 204 | 420 | 2.48e-41 | 145 |
MsG0780038463.01.T01 | MTR_3g106960 | 44.271 | 192 | 100 | 4 | 10 | 197 | 2 | 190 | 6.43e-40 | 137 |
MsG0780038463.01.T01 | MTR_7g083740 | 40.092 | 217 | 112 | 7 | 1 | 208 | 163 | 370 | 1.76e-38 | 137 |
MsG0780038463.01.T01 | MTR_7g075820 | 41.346 | 208 | 110 | 6 | 1 | 205 | 196 | 394 | 1.95e-36 | 132 |
MsG0780038463.01.T01 | MTR_2g005990 | 40.376 | 213 | 114 | 7 | 1 | 205 | 188 | 395 | 3.71e-36 | 131 |
MsG0780038463.01.T01 | MTR_3g099830 | 40.654 | 214 | 110 | 8 | 1 | 205 | 169 | 374 | 2.44e-35 | 129 |
MsG0780038463.01.T01 | MTR_2g007550 | 39.713 | 209 | 98 | 6 | 13 | 204 | 137 | 334 | 4.80e-34 | 125 |
MsG0780038463.01.T01 | MTR_3g026920 | 40.183 | 219 | 106 | 9 | 1 | 204 | 196 | 404 | 6.84e-34 | 125 |
MsG0780038463.01.T01 | MTR_1g053025 | 41.364 | 220 | 105 | 10 | 1 | 205 | 179 | 389 | 7.40e-34 | 125 |
MsG0780038463.01.T01 | MTR_2g007400 | 42.326 | 215 | 106 | 12 | 1 | 204 | 195 | 402 | 1.03e-33 | 125 |
MsG0780038463.01.T01 | MTR_1g107385 | 38.318 | 214 | 115 | 8 | 1 | 205 | 218 | 423 | 1.21e-33 | 125 |
MsG0780038463.01.T01 | MTR_6g029350 | 39.713 | 209 | 108 | 9 | 2 | 204 | 1 | 197 | 4.42e-32 | 117 |
MsG0780038463.01.T01 | MTR_5g083890 | 40.741 | 216 | 111 | 8 | 1 | 204 | 194 | 404 | 5.72e-32 | 122 |
MsG0780038463.01.T01 | MTR_2g008320 | 38.679 | 212 | 112 | 7 | 2 | 204 | 224 | 426 | 2.75e-31 | 119 |
MsG0780038463.01.T01 | MTR_2g007360 | 36.486 | 222 | 116 | 11 | 2 | 205 | 160 | 374 | 7.68e-31 | 117 |
MsG0780038463.01.T01 | MTR_7g034120 | 39.423 | 208 | 104 | 8 | 4 | 204 | 115 | 307 | 2.92e-30 | 114 |
MsG0780038463.01.T01 | MTR_5g054920 | 36.957 | 184 | 94 | 7 | 4 | 178 | 7 | 177 | 1.31e-29 | 109 |
MsG0780038463.01.T01 | MTR_6g040270 | 33.953 | 215 | 115 | 8 | 4 | 204 | 179 | 380 | 1.17e-28 | 111 |
MsG0780038463.01.T01 | MTR_2g007610 | 45.455 | 143 | 73 | 3 | 63 | 204 | 12 | 150 | 3.58e-28 | 105 |
MsG0780038463.01.T01 | MTR_1g066830 | 36.199 | 221 | 106 | 9 | 4 | 203 | 179 | 385 | 7.02e-28 | 109 |
MsG0780038463.01.T01 | MTR_3g094980 | 52.688 | 93 | 43 | 1 | 86 | 178 | 26 | 117 | 2.22e-25 | 98.2 |
MsG0780038463.01.T01 | MTR_2g008310 | 34.762 | 210 | 121 | 5 | 2 | 204 | 170 | 370 | 2.44e-25 | 102 |
MsG0780038463.01.T01 | MTR_1g041245 | 34.906 | 212 | 123 | 6 | 2 | 204 | 180 | 385 | 6.55e-25 | 101 |
MsG0780038463.01.T01 | MTR_7g033990 | 35.714 | 210 | 104 | 9 | 4 | 199 | 185 | 377 | 7.61e-25 | 101 |
MsG0780038463.01.T01 | MTR_7g033915 | 34.906 | 212 | 113 | 9 | 3 | 203 | 166 | 363 | 9.47e-25 | 100 |
MsG0780038463.01.T01 | MTR_2g036470 | 35.160 | 219 | 115 | 8 | 3 | 204 | 187 | 395 | 9.74e-25 | 100 |
MsG0780038463.01.T01 | MTR_3g108150 | 37.264 | 212 | 114 | 5 | 4 | 202 | 179 | 384 | 1.30e-24 | 100 |
MsG0780038463.01.T01 | MTR_5g007410 | 32.735 | 223 | 119 | 8 | 1 | 203 | 195 | 406 | 1.84e-24 | 100 |
MsG0780038463.01.T01 | MTR_7g007340 | 37.915 | 211 | 95 | 9 | 4 | 199 | 162 | 351 | 2.45e-24 | 99.8 |
MsG0780038463.01.T01 | MTR_1089s0010 | 33.803 | 213 | 116 | 9 | 4 | 204 | 179 | 378 | 7.61e-24 | 98.2 |
MsG0780038463.01.T01 | MTR_5g073420 | 36.111 | 216 | 103 | 10 | 1 | 202 | 183 | 377 | 2.11e-23 | 97.1 |
MsG0780038463.01.T01 | MTR_4g098590 | 39.344 | 183 | 101 | 5 | 1 | 179 | 179 | 355 | 2.50e-23 | 96.7 |
MsG0780038463.01.T01 | MTR_1g108820 | 33.036 | 224 | 114 | 9 | 4 | 204 | 175 | 385 | 2.82e-23 | 97.1 |
MsG0780038463.01.T01 | MTR_7g088260 | 36.449 | 214 | 108 | 10 | 4 | 202 | 259 | 459 | 7.79e-23 | 96.3 |
MsG0780038463.01.T01 | MTR_7g055943 | 33.480 | 227 | 122 | 10 | 3 | 211 | 211 | 426 | 8.45e-23 | 95.9 |
MsG0780038463.01.T01 | MTR_6g022520 | 32.727 | 220 | 119 | 7 | 3 | 204 | 104 | 312 | 1.02e-22 | 94.4 |
MsG0780038463.01.T01 | MTR_4g039440 | 33.632 | 223 | 114 | 7 | 3 | 203 | 200 | 410 | 1.51e-22 | 95.1 |
MsG0780038463.01.T01 | MTR_3g087260 | 35.849 | 212 | 115 | 6 | 3 | 202 | 252 | 454 | 4.10e-22 | 94.4 |
MsG0780038463.01.T01 | MTR_6g022500 | 31.776 | 214 | 124 | 6 | 3 | 204 | 272 | 475 | 4.50e-22 | 94.4 |
MsG0780038463.01.T01 | MTR_7g056433 | 35.211 | 213 | 115 | 8 | 3 | 202 | 184 | 386 | 6.14e-22 | 93.2 |
MsG0780038463.01.T01 | MTR_1g108800 | 35.321 | 218 | 107 | 9 | 4 | 204 | 141 | 341 | 6.35e-22 | 92.4 |
MsG0780038463.01.T01 | MTR_5g058100 | 33.488 | 215 | 118 | 9 | 4 | 204 | 180 | 383 | 9.01e-22 | 92.8 |
MsG0780038463.01.T01 | MTR_7g026500 | 35.681 | 213 | 110 | 11 | 4 | 202 | 193 | 392 | 9.79e-22 | 92.8 |
MsG0780038463.01.T01 | MTR_3g036250 | 34.928 | 209 | 109 | 5 | 1 | 202 | 175 | 363 | 2.09e-21 | 91.3 |
MsG0780038463.01.T01 | MTR_2g007090 | 40.876 | 137 | 60 | 6 | 77 | 205 | 171 | 294 | 2.42e-21 | 90.1 |
MsG0780038463.01.T01 | MTR_7g034115 | 37.705 | 183 | 93 | 9 | 4 | 178 | 182 | 351 | 2.46e-21 | 91.3 |
MsG0780038463.01.T01 | MTR_7g056020 | 36.697 | 218 | 98 | 10 | 3 | 199 | 170 | 368 | 3.90e-21 | 92.0 |
MsG0780038463.01.T01 | MTR_7g032370 | 32.547 | 212 | 112 | 7 | 4 | 204 | 160 | 351 | 4.53e-21 | 90.5 |
MsG0780038463.01.T01 | MTR_1g085120 | 32.258 | 217 | 123 | 6 | 3 | 204 | 263 | 470 | 8.00e-21 | 90.5 |
MsG0780038463.01.T01 | MTR_7g115270 | 34.562 | 217 | 116 | 8 | 4 | 202 | 191 | 399 | 9.04e-21 | 90.1 |
MsG0780038463.01.T01 | MTR_1g085120 | 32.258 | 217 | 123 | 6 | 3 | 204 | 338 | 545 | 9.23e-21 | 90.5 |
MsG0780038463.01.T01 | MTR_5g058000 | 34.579 | 214 | 116 | 8 | 1 | 204 | 175 | 374 | 2.70e-20 | 88.6 |
MsG0780038463.01.T01 | MTR_7g032380 | 30.000 | 210 | 102 | 6 | 4 | 204 | 182 | 355 | 4.53e-20 | 87.8 |
MsG0780038463.01.T01 | MTR_3g071850 | 31.390 | 223 | 114 | 9 | 3 | 201 | 198 | 405 | 8.36e-20 | 88.2 |
MsG0780038463.01.T01 | MTR_3g109982 | 34.286 | 210 | 114 | 7 | 3 | 198 | 270 | 469 | 2.13e-19 | 87.0 |
MsG0780038463.01.T01 | MTR_6g045333 | 30.455 | 220 | 124 | 7 | 4 | 204 | 236 | 445 | 2.36e-19 | 86.3 |
MsG0780038463.01.T01 | MTR_5g008950 | 31.004 | 229 | 132 | 7 | 3 | 219 | 164 | 378 | 2.38e-19 | 85.9 |
MsG0780038463.01.T01 | MTR_0543s0010 | 31.925 | 213 | 117 | 7 | 4 | 202 | 249 | 447 | 3.43e-19 | 85.9 |
MsG0780038463.01.T01 | MTR_2g007530 | 40.244 | 164 | 68 | 6 | 49 | 204 | 195 | 336 | 4.69e-19 | 84.7 |
MsG0780038463.01.T01 | MTR_0009s0080 | 33.684 | 190 | 104 | 7 | 1 | 178 | 188 | 367 | 1.39e-18 | 84.0 |
MsG0780038463.01.T01 | MTR_1377s0010 | 38.983 | 118 | 59 | 3 | 76 | 189 | 30 | 138 | 2.71e-18 | 78.6 |
MsG0780038463.01.T01 | MTR_7g098510 | 32.569 | 218 | 117 | 7 | 1 | 202 | 185 | 388 | 2.82e-18 | 82.8 |
MsG0780038463.01.T01 | MTR_5g045170 | 31.050 | 219 | 125 | 7 | 1 | 204 | 183 | 390 | 6.46e-18 | 82.0 |
MsG0780038463.01.T01 | MTR_5g008920 | 31.579 | 209 | 125 | 6 | 3 | 202 | 179 | 378 | 8.96e-18 | 81.6 |
MsG0780038463.01.T01 | MTR_0492s0020 | 33.333 | 186 | 102 | 6 | 4 | 181 | 249 | 420 | 1.50e-17 | 81.3 |
MsG0780038463.01.T01 | MTR_5g063950 | 30.455 | 220 | 121 | 7 | 1 | 202 | 154 | 359 | 1.71e-17 | 80.5 |
MsG0780038463.01.T01 | MTR_7g081290 | 38.053 | 113 | 57 | 2 | 76 | 180 | 123 | 230 | 2.40e-17 | 79.0 |
MsG0780038463.01.T01 | MTR_5g039450 | 28.959 | 221 | 119 | 9 | 1 | 202 | 154 | 355 | 4.16e-17 | 79.3 |
MsG0780038463.01.T01 | MTR_3g108560 | 30.137 | 219 | 120 | 8 | 3 | 202 | 182 | 386 | 4.50e-17 | 79.3 |
MsG0780038463.01.T01 | MTR_2g020180 | 30.942 | 223 | 114 | 9 | 3 | 203 | 9 | 213 | 6.69e-17 | 76.6 |
MsG0780038463.01.T01 | MTR_5g012840 | 42.727 | 110 | 53 | 2 | 97 | 202 | 212 | 315 | 7.78e-17 | 78.2 |
MsG0780038463.01.T01 | MTR_5g073370 | 31.776 | 214 | 120 | 8 | 4 | 204 | 179 | 379 | 9.11e-17 | 78.6 |
MsG0780038463.01.T01 | MTR_3g107940 | 36.842 | 152 | 76 | 7 | 79 | 223 | 89 | 227 | 1.90e-16 | 77.4 |
MsG0780038463.01.T01 | MTR_6g022360 | 32.258 | 217 | 118 | 9 | 3 | 202 | 201 | 405 | 2.87e-16 | 77.4 |
MsG0780038463.01.T01 | MTR_7g098570 | 34.450 | 209 | 117 | 7 | 3 | 200 | 189 | 388 | 2.91e-16 | 77.4 |
MsG0780038463.01.T01 | MTR_6g011460 | 29.412 | 221 | 120 | 7 | 3 | 204 | 217 | 420 | 3.25e-16 | 77.4 |
MsG0780038463.01.T01 | MTR_4g080610 | 30.851 | 188 | 110 | 6 | 3 | 179 | 148 | 326 | 3.35e-16 | 77.0 |
MsG0780038463.01.T01 | MTR_5g024060 | 35.156 | 128 | 71 | 3 | 76 | 197 | 79 | 200 | 3.51e-16 | 75.5 |
MsG0780038463.01.T01 | MTR_7g098480 | 34.300 | 207 | 118 | 8 | 1 | 201 | 185 | 379 | 3.78e-16 | 77.0 |
MsG0780038463.01.T01 | MTR_5g013500 | 28.700 | 223 | 132 | 6 | 3 | 204 | 148 | 364 | 7.72e-16 | 75.9 |
MsG0780038463.01.T01 | MTR_7g056277 | 30.144 | 209 | 121 | 7 | 4 | 202 | 432 | 625 | 1.12e-15 | 75.9 |
MsG0780038463.01.T01 | MTR_7g056420 | 33.333 | 219 | 116 | 9 | 2 | 199 | 150 | 359 | 1.96e-15 | 75.5 |
MsG0780038463.01.T01 | MTR_7g056430 | 33.333 | 219 | 116 | 9 | 2 | 199 | 150 | 359 | 2.19e-15 | 75.1 |
MsG0780038463.01.T01 | MTR_7g056287 | 30.622 | 209 | 120 | 7 | 4 | 202 | 176 | 369 | 2.51e-15 | 74.3 |
MsG0780038463.01.T01 | MTR_3g082890 | 32.020 | 203 | 113 | 5 | 3 | 186 | 266 | 462 | 3.81e-15 | 74.3 |
MsG0780038463.01.T01 | MTR_5g031970 | 32.143 | 168 | 87 | 6 | 55 | 204 | 197 | 355 | 4.39e-15 | 73.6 |
MsG0780038463.01.T01 | MTR_3g095630 | 31.844 | 179 | 98 | 8 | 28 | 195 | 10 | 175 | 4.63e-15 | 71.2 |
MsG0780038463.01.T01 | MTR_1g053050 | 44.578 | 83 | 45 | 1 | 125 | 206 | 34 | 116 | 5.26e-15 | 69.3 |
MsG0780038463.01.T01 | MTR_2g007500 | 37.349 | 166 | 87 | 6 | 4 | 158 | 176 | 335 | 2.33e-14 | 71.2 |
MsG0780038463.01.T01 | MTR_3g105060 | 28.846 | 208 | 120 | 6 | 3 | 202 | 183 | 370 | 2.59e-14 | 71.6 |
MsG0780038463.01.T01 | MTR_7g021990 | 35.032 | 157 | 92 | 6 | 39 | 189 | 252 | 404 | 4.18e-14 | 71.2 |
MsG0780038463.01.T01 | MTR_7g021950 | 35.032 | 157 | 92 | 6 | 39 | 189 | 252 | 404 | 4.89e-14 | 70.9 |
MsG0780038463.01.T01 | MTR_6g044560 | 28.111 | 217 | 112 | 6 | 3 | 204 | 376 | 563 | 5.69e-14 | 70.9 |
MsG0780038463.01.T01 | MTR_6g044572 | 28.111 | 217 | 112 | 6 | 3 | 204 | 200 | 387 | 8.09e-14 | 70.1 |
MsG0780038463.01.T01 | MTR_7g075800 | 31.122 | 196 | 110 | 7 | 2 | 174 | 198 | 391 | 8.79e-14 | 70.5 |
MsG0780038463.01.T01 | MTR_5g039470 | 28.495 | 186 | 112 | 6 | 1 | 174 | 151 | 327 | 2.75e-13 | 68.2 |
MsG0780038463.01.T01 | MTR_8g085430 | 43.902 | 82 | 45 | 1 | 98 | 178 | 215 | 296 | 4.40e-13 | 67.8 |
MsG0780038463.01.T01 | MTR_5g065100 | 31.163 | 215 | 104 | 10 | 1 | 207 | 174 | 352 | 6.56e-13 | 67.8 |
MsG0780038463.01.T01 | MTR_7g007370 | 35.602 | 191 | 108 | 6 | 3 | 188 | 147 | 327 | 7.65e-13 | 67.0 |
MsG0780038463.01.T01 | MTR_3g115430 | 30.833 | 120 | 68 | 3 | 89 | 202 | 12 | 122 | 8.34e-13 | 63.5 |
MsG0780038463.01.T01 | MTR_7g022105 | 33.562 | 146 | 86 | 5 | 39 | 178 | 253 | 393 | 1.07e-12 | 67.0 |
MsG0780038463.01.T01 | MTR_7g034110 | 38.095 | 105 | 54 | 3 | 80 | 181 | 217 | 313 | 1.30e-12 | 66.6 |
MsG0780038463.01.T01 | MTR_5g033200 | 33.333 | 174 | 88 | 8 | 36 | 195 | 13 | 172 | 3.77e-12 | 63.2 |
MsG0780038463.01.T01 | MTR_5g039490 | 31.429 | 210 | 104 | 8 | 3 | 204 | 198 | 375 | 6.52e-12 | 64.7 |
MsG0780038463.01.T01 | MTR_5g092960 | 36.090 | 133 | 81 | 2 | 76 | 205 | 331 | 462 | 9.37e-12 | 64.3 |
MsG0780038463.01.T01 | MTR_4g080590 | 27.273 | 187 | 101 | 5 | 18 | 182 | 250 | 423 | 1.02e-11 | 64.3 |
MsG0780038463.01.T01 | MTR_8g467800 | 35.606 | 132 | 80 | 2 | 76 | 202 | 319 | 450 | 1.02e-11 | 64.3 |
MsG0780038463.01.T01 | MTR_7g114710 | 31.387 | 137 | 80 | 4 | 76 | 202 | 229 | 361 | 1.25e-11 | 63.5 |
MsG0780038463.01.T01 | MTR_1g059860 | 28.261 | 138 | 85 | 3 | 36 | 171 | 186 | 311 | 1.83e-11 | 63.2 |
MsG0780038463.01.T01 | MTR_3g023630 | 28.708 | 209 | 125 | 8 | 3 | 202 | 178 | 371 | 1.84e-11 | 63.2 |
MsG0780038463.01.T01 | MTR_3g071790 | 28.814 | 177 | 105 | 7 | 8 | 172 | 35 | 202 | 2.33e-11 | 61.2 |
MsG0780038463.01.T01 | MTR_5g045510 | 27.778 | 216 | 121 | 8 | 1 | 204 | 179 | 371 | 3.32e-11 | 62.4 |
MsG0780038463.01.T01 | MTR_5g073340 | 32.026 | 153 | 86 | 5 | 6 | 147 | 155 | 300 | 6.88e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 88 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTCTTAAAACACTTTATT+TGG | 0.085903 | 7:-47161268 | MsG0780038463.01.T01:five_prime_UTR |
CACTTTATTTGGAATATATT+TGG | 0.149216 | 7:-47161257 | MsG0780038463.01.T01:five_prime_UTR |
GAGAATAGTGGTGGGCAATT+TGG | 0.236042 | 7:+47161367 | None:intergenic |
GGTTCACAATTTGATGGTTT+TGG | 0.252723 | 7:+47159726 | None:intergenic |
GAAGTCATTGAATTGAAAAT+TGG | 0.264015 | 7:+47161565 | None:intergenic |
GTGAGTAAATCTTCAAGATT+TGG | 0.295234 | 7:+47161192 | None:intergenic |
ATCATGAAATCCCGAAGTTT+AGG | 0.296409 | 7:+47161231 | None:intergenic |
AGAATAGTGGTGGGCAATTT+GGG | 0.303082 | 7:+47161368 | None:intergenic |
TCATCTCTCCGTCGGCTCAA+TGG | 0.306698 | 7:-47161396 | MsG0780038463.01.T01:five_prime_UTR |
TATTTGGTTCCCTAAACTTC+GGG | 0.336276 | 7:-47161241 | MsG0780038463.01.T01:five_prime_UTR |
CATCTCTCCGTCGGCTCAAT+GGG | 0.354568 | 7:-47161395 | MsG0780038463.01.T01:five_prime_UTR |
TCATGAAATCCCGAAGTTTA+GGG | 0.358913 | 7:+47161232 | None:intergenic |
TACACGCTGCAGAGGCCTTT+GGG | 0.371882 | 7:+47160368 | None:intergenic |
GGATGTTGCAACGGATTGTT+TGG | 0.378968 | 7:+47161667 | None:intergenic |
TGAAAAGATCGCAAGATCTA+AGG | 0.386360 | 7:+47160515 | None:intergenic |
TTACACGCTGCAGAGGCCTT+TGG | 0.387180 | 7:+47160367 | None:intergenic |
AGACATTGTGGTACAACGTC+TGG | 0.397496 | 7:+47160547 | None:intergenic |
ACAAAAGCTTTACCTTGATC+AGG | 0.402445 | 7:-47160790 | MsG0780038463.01.T01:intron |
AATTTGAATGGCGGAGGAGG+AGG | 0.419129 | 7:-47161750 | MsG0780038463.01.T01:five_prime_UTR |
TCTGCGCTTTGAAGTTGATC+AGG | 0.419522 | 7:-47161031 | MsG0780038463.01.T01:intron |
AACTACAAAGTTGACCCATT+TGG | 0.422711 | 7:+47161439 | None:intergenic |
TTGAATGGCGGAGGAGGAGG+GGG | 0.433698 | 7:-47161747 | MsG0780038463.01.T01:five_prime_UTR |
CCATGTTTCCCCGTGTAAAT+CGG | 0.434060 | 7:+47160603 | None:intergenic |
GAGAGAATGTGACAGAGAAT+CGG | 0.438004 | 7:+47161701 | None:intergenic |
TTATTTCCCTCGATTATAGT+TGG | 0.444589 | 7:-47160851 | MsG0780038463.01.T01:CDS |
TTGCTTAACTAACTTGATCA+AGG | 0.450265 | 7:-47161112 | MsG0780038463.01.T01:CDS |
CCATCGACAGCATCACCAAA+TGG | 0.450334 | 7:-47161454 | MsG0780038463.01.T01:five_prime_UTR |
GAAGTTGACCACTATTACTC+GGG | 0.455339 | 7:-47159751 | MsG0780038463.01.T01:CDS |
GAAAATTTGAATGGCGGAGG+AGG | 0.464324 | 7:-47161753 | MsG0780038463.01.T01:five_prime_UTR |
ATAATGAGAGCAATCAATAT+CGG | 0.465518 | 7:+47161089 | None:intergenic |
ATTTGAATGGCGGAGGAGGA+GGG | 0.473460 | 7:-47161749 | MsG0780038463.01.T01:five_prime_UTR |
AATTGGGAATCAAATCATTA+CGG | 0.474537 | 7:+47160898 | None:intergenic |
TTCAACTTCCTGGGTCTACA+AGG | 0.481097 | 7:-47160496 | MsG0780038463.01.T01:CDS |
ATATTTGGTTCCCTAAACTT+CGG | 0.483010 | 7:-47161242 | MsG0780038463.01.T01:five_prime_UTR |
CGGGGAAACATGGACTCAAA+AGG | 0.493431 | 7:-47160593 | MsG0780038463.01.T01:CDS |
AGAGAATGTGACAGAGAATC+GGG | 0.494832 | 7:+47161702 | None:intergenic |
TTTGAATGGCGGAGGAGGAG+GGG | 0.500719 | 7:-47161748 | MsG0780038463.01.T01:five_prime_UTR |
CAACATCCGCTCTTTCAAAA+CGG | 0.500910 | 7:-47161652 | MsG0780038463.01.T01:five_prime_UTR |
CCGATTTACACGGGGAAACA+TGG | 0.501184 | 7:-47160603 | MsG0780038463.01.T01:CDS |
TGTTACGGTTCACAATTTGA+TGG | 0.505733 | 7:+47159720 | None:intergenic |
ATCCTTATCAAACCTGATCA+AGG | 0.517874 | 7:+47160778 | None:intergenic |
CCATTTGGTGATGCTGTCGA+TGG | 0.526694 | 7:+47161454 | None:intergenic |
CATCGACAGCATCACCAAAT+GGG | 0.528018 | 7:-47161453 | MsG0780038463.01.T01:five_prime_UTR |
ATTGCAGAAGCTTTGTGAGA+TGG | 0.532366 | 7:+47161882 | None:intergenic |
GTTCCAACTCTGCGTTTCAA+CGG | 0.537782 | 7:-47161608 | MsG0780038463.01.T01:five_prime_UTR |
TTTAATAGGCCGATTTACAC+GGG | 0.539315 | 7:-47160612 | MsG0780038463.01.T01:intron |
AGAAGTTGACCACTATTACT+CGG | 0.540442 | 7:-47159752 | MsG0780038463.01.T01:CDS |
ACGGGAAATGCGGCGTCTCG+TGG | 0.541709 | 7:+47161524 | None:intergenic |
CATTTGGTGATGCTGTCGAT+GGG | 0.545570 | 7:+47161455 | None:intergenic |
GCCGAAAATTTGAATGGCGG+AGG | 0.549209 | 7:-47161756 | MsG0780038463.01.T01:five_prime_UTR |
TCCAACGTTTCTGATTGTCA+TGG | 0.552251 | 7:+47160423 | None:intergenic |
AATCTTTAACTTGTAACGAG+TGG | 0.556321 | 7:-47161143 | MsG0780038463.01.T01:CDS |
ATATCAGCCGAAAATTTGAA+TGG | 0.557764 | 7:-47161762 | MsG0780038463.01.T01:five_prime_UTR |
TGCAGAGGCCTTTGGGCATG+AGG | 0.561395 | 7:+47160375 | None:intergenic |
TGATGCTGTCGATGGGGCAC+CGG | 0.569871 | 7:+47161462 | None:intergenic |
ATGTGACAGAGAATCGGGTC+TGG | 0.570892 | 7:+47161707 | None:intergenic |
TGAAAGAGCGGATGTTGCAA+CGG | 0.570991 | 7:+47161658 | None:intergenic |
TAAAGCTTAAGAACAACAAG+AGG | 0.572780 | 7:+47161333 | None:intergenic |
GGGCAAACCCATTGAGCCGA+CGG | 0.573541 | 7:+47161388 | None:intergenic |
GAATATCTTCATCTCTCCGT+CGG | 0.576923 | 7:-47161404 | MsG0780038463.01.T01:five_prime_UTR |
GACATTGTGGTACAACGTCT+GGG | 0.579775 | 7:+47160548 | None:intergenic |
ACCATGACAATCAGAAACGT+TGG | 0.592042 | 7:-47160424 | MsG0780038463.01.T01:CDS |
GCAGAGTTGGAACGGAGAGG+TGG | 0.595435 | 7:+47161618 | None:intergenic |
TCAACTTCAAAGCGCAGAGA+AGG | 0.597396 | 7:+47161036 | None:intergenic |
TTTGCAAGTGAGAATAGTGG+TGG | 0.601801 | 7:+47161358 | None:intergenic |
TGTCCGTTGAAACGCAGAGT+TGG | 0.603791 | 7:+47161605 | None:intergenic |
TTACATACGATGAACCTCTC+CGG | 0.604917 | 7:-47161481 | MsG0780038463.01.T01:five_prime_UTR |
ACTAATATCCTCATGCCCAA+AGG | 0.605969 | 7:-47160383 | MsG0780038463.01.T01:CDS |
CTGTCGATGGGGCACCGGAG+AGG | 0.606702 | 7:+47161467 | None:intergenic |
TGTAAGTTTACACGCTGCAG+AGG | 0.608844 | 7:+47160360 | None:intergenic |
AAGTCGCCAACTATAATCGA+GGG | 0.611939 | 7:+47160845 | None:intergenic |
GTTGAAACGCAGAGTTGGAA+CGG | 0.613203 | 7:+47161610 | None:intergenic |
ACATTGTGAACTGCTTTGAA+CGG | 0.613866 | 7:+47161060 | None:intergenic |
AAGGTGAGCTTCTATTCGCA+AGG | 0.617724 | 7:-47160477 | MsG0780038463.01.T01:CDS |
CATCGTATGTAACATCAAAG+TGG | 0.619986 | 7:+47161492 | None:intergenic |
CTGATATGGAGAAGCACAAG+AGG | 0.622365 | 7:+47161778 | None:intergenic |
AAAGTCGCCAACTATAATCG+AGG | 0.625425 | 7:+47160844 | None:intergenic |
AAAGCTTAAGAACAACAAGA+GGG | 0.628178 | 7:+47161334 | None:intergenic |
AGGTGTAATGAAAGACATTG+TGG | 0.632011 | 7:+47160535 | None:intergenic |
GAAGCTCACCTTGTAGACCC+AGG | 0.636057 | 7:+47160488 | None:intergenic |
GGCGTCTCGTGGAAGCAGAA+CGG | 0.638221 | 7:+47161535 | None:intergenic |
CATCCGCTCTTTCAAAACGG+TGG | 0.653507 | 7:-47161649 | MsG0780038463.01.T01:five_prime_UTR |
CATTGAATTGAAAATTGGTG+AGG | 0.665169 | 7:+47161570 | None:intergenic |
TTGCAAGTGAGAATAGTGGT+GGG | 0.665611 | 7:+47161359 | None:intergenic |
AACGCAGAGTTGGAACGGAG+AGG | 0.684469 | 7:+47161615 | None:intergenic |
ATTTGGTGATGCTGTCGATG+GGG | 0.692520 | 7:+47161456 | None:intergenic |
TCAGCCGAAAATTTGAATGG+CGG | 0.694256 | 7:-47161759 | MsG0780038463.01.T01:five_prime_UTR |
TTAATAGGCCGATTTACACG+GGG | 0.741949 | 7:-47160611 | MsG0780038463.01.T01:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAGAATAAAGAAGGTAAA+TGG | + | Chr7:47161519-47161538 | None:intergenic | 20.0% |
!! | TTCTCTTAAAACACTTTATT+TGG | - | Chr7:47160335-47160354 | MsG0780038463.01.T01:intron | 20.0% |
!!! | AAATAAAGTGTTTTAAGAGA+AGG | + | Chr7:47160336-47160355 | None:intergenic | 20.0% |
!!! | AGGATATTAGTCTTTTTATT+TGG | + | Chr7:47161211-47161230 | None:intergenic | 20.0% |
!!! | CACTTTATTTGGAATATATT+TGG | - | Chr7:47160346-47160365 | MsG0780038463.01.T01:CDS | 20.0% |
!!! | GATTTCATGATATTTTTAAC+TGG | - | Chr7:47160384-47160403 | MsG0780038463.01.T01:CDS | 20.0% |
!!! | GGATATTAGTCTTTTTATTT+GGG | + | Chr7:47161210-47161229 | None:intergenic | 20.0% |
!!! | TAAGCTTTATAATTTTAGTG+TGG | - | Chr7:47160284-47160303 | MsG0780038463.01.T01:intron | 20.0% |
!!! | TCTTTATGTGCATTTTTAAT+AGG | - | Chr7:47160977-47160996 | MsG0780038463.01.T01:intron | 20.0% |
! | AAGCTAATCAAATGATAAGA+AGG | + | Chr7:47161317-47161336 | None:intergenic | 25.0% |
! | AATTGGGAATCAAATCATTA+CGG | + | Chr7:47160708-47160727 | None:intergenic | 25.0% |
! | ACCTAGAATTGATAAATTGT+TGG | + | Chr7:47160679-47160698 | None:intergenic | 25.0% |
! | ATAATGAGAGCAATCAATAT+CGG | + | Chr7:47160517-47160536 | None:intergenic | 25.0% |
! | ATTAGATTGCTCTTAGAATT+TGG | - | Chr7:47160870-47160889 | MsG0780038463.01.T01:CDS | 25.0% |
! | GAAGTCATTGAATTGAAAAT+TGG | + | Chr7:47160041-47160060 | None:intergenic | 25.0% |
! | TCCAACAATTTATCAATTCT+AGG | - | Chr7:47160675-47160694 | MsG0780038463.01.T01:intron | 25.0% |
! | TTAGATTGCTCTTAGAATTT+GGG | - | Chr7:47160871-47160890 | MsG0780038463.01.T01:CDS | 25.0% |
! | TTATTTGATGCATAACCATA+GGG | - | Chr7:47161455-47161474 | MsG0780038463.01.T01:five_prime_UTR | 25.0% |
!! | ACCTTCTTTATTCTTTTACA+CGG | - | Chr7:47161522-47161541 | MsG0780038463.01.T01:five_prime_UTR | 25.0% |
!!! | ATCAAAGTGGAAAGTTTTAA+CGG | + | Chr7:47160101-47160120 | None:intergenic | 25.0% |
!!! | TGAGTCAAGTTTTGAAAATT+GGG | + | Chr7:47160724-47160743 | None:intergenic | 25.0% |
!!! | TTGAGTCAAGTTTTGAAAAT+TGG | + | Chr7:47160725-47160744 | None:intergenic | 25.0% |
!!! | TTTTGATCGTTTTTTGTGAA+AGG | - | Chr7:47161707-47161726 | MsG0780038463.01.T01:five_prime_UTR | 25.0% |
AAAGCTTAAGAACAACAAGA+GGG | + | Chr7:47160272-47160291 | None:intergenic | 30.0% | |
AAGGAGTAGTCCTTTATAAA+AGG | - | Chr7:47161726-47161745 | MsG0780038463.01.T01:five_prime_UTR | 30.0% | |
AATTATCACACTAGGCTAAT+GGG | - | Chr7:47161587-47161606 | MsG0780038463.01.T01:five_prime_UTR | 30.0% | |
AGGAGTAGTCCTTTATAAAA+GGG | - | Chr7:47161727-47161746 | MsG0780038463.01.T01:five_prime_UTR | 30.0% | |
ATATCAGCCGAAAATTTGAA+TGG | - | Chr7:47159841-47159860 | MsG0780038463.01.T01:intron | 30.0% | |
CATTGAATTGAAAATTGGTG+AGG | + | Chr7:47160036-47160055 | None:intergenic | 30.0% | |
CTTATTTGATGCATAACCAT+AGG | - | Chr7:47161454-47161473 | MsG0780038463.01.T01:five_prime_UTR | 30.0% | |
GTGAGTAAATCTTCAAGATT+TGG | + | Chr7:47160414-47160433 | None:intergenic | 30.0% | |
TAAAGCTTAAGAACAACAAG+AGG | + | Chr7:47160273-47160292 | None:intergenic | 30.0% | |
TCCGTGTAAAAGAATAAAGA+AGG | + | Chr7:47161526-47161545 | None:intergenic | 30.0% | |
TTAAGCAGATAGTTAGTAAG+AGG | - | Chr7:47161649-47161668 | MsG0780038463.01.T01:five_prime_UTR | 30.0% | |
TTATTTCCCTCGATTATAGT+TGG | - | Chr7:47160752-47160771 | MsG0780038463.01.T01:intron | 30.0% | |
TTCAAACGAATTATCACACT+AGG | - | Chr7:47161579-47161598 | MsG0780038463.01.T01:five_prime_UTR | 30.0% | |
TTGCTTAACTAACTTGATCA+AGG | - | Chr7:47160491-47160510 | MsG0780038463.01.T01:CDS | 30.0% | |
TTTATAAAAGGGAAAACCCA+CGG | - | Chr7:47161738-47161757 | MsG0780038463.01.T01:five_prime_UTR | 30.0% | |
! | ACATCATTCTAAAGGGAAAT+GGG | - | Chr7:47161616-47161635 | MsG0780038463.01.T01:five_prime_UTR | 30.0% |
! | ATATTTGGTTCCCTAAACTT+CGG | - | Chr7:47160361-47160380 | MsG0780038463.01.T01:CDS | 30.0% |
! | ATTCAAATTTTCGGCTGATA+TGG | + | Chr7:47159842-47159861 | None:intergenic | 30.0% |
! | TTTTCAAAACTTGACTCAAC+TGG | - | Chr7:47160726-47160745 | MsG0780038463.01.T01:intron | 30.0% |
!! | AATCTTTAACTTGTAACGAG+TGG | - | Chr7:47160460-47160479 | MsG0780038463.01.T01:CDS | 30.0% |
!! | GCTTTATAATTTTAGTGTGG+AGG | - | Chr7:47160287-47160306 | MsG0780038463.01.T01:intron | 30.0% |
!! | TAAGAGGATAGCTTGTTATA+GGG | - | Chr7:47161665-47161684 | MsG0780038463.01.T01:five_prime_UTR | 30.0% |
!! | TATAATTTTAGTGTGGAGGA+GGG | - | Chr7:47160291-47160310 | MsG0780038463.01.T01:intron | 30.0% |
!! | TCAAAGTGGAAAGTTTTAAC+GGG | + | Chr7:47160100-47160119 | None:intergenic | 30.0% |
!! | TCTTACAAAATTGACTTGTG+AGG | - | Chr7:47160909-47160928 | MsG0780038463.01.T01:CDS | 30.0% |
!! | TTATAATTTTAGTGTGGAGG+AGG | - | Chr7:47160290-47160309 | MsG0780038463.01.T01:intron | 30.0% |
!! | TTTTAATAGGCCGATTTACA+CGG | - | Chr7:47160990-47161009 | MsG0780038463.01.T01:intron | 30.0% |
AACCAAATCTAGAAGTTGCA+TGG | + | Chr7:47161343-47161362 | None:intergenic | 35.0% | |
AACTACAAAGTTGACCCATT+TGG | + | Chr7:47160167-47160186 | None:intergenic | 35.0% | |
ACAAAAGCTTTACCTTGATC+AGG | - | Chr7:47160813-47160832 | MsG0780038463.01.T01:CDS | 35.0% | |
AGAAGTTGACCACTATTACT+CGG | - | Chr7:47161851-47161870 | MsG0780038463.01.T01:intron | 35.0% | |
AGGTGTAATGAAAGACATTG+TGG | + | Chr7:47161071-47161090 | None:intergenic | 35.0% | |
ATCATGAAATCCCGAAGTTT+AGG | + | Chr7:47160375-47160394 | None:intergenic | 35.0% | |
ATCCTTATCAAACCTGATCA+AGG | + | Chr7:47160828-47160847 | None:intergenic | 35.0% | |
ATTATCACACTAGGCTAATG+GGG | - | Chr7:47161588-47161607 | MsG0780038463.01.T01:five_prime_UTR | 35.0% | |
ATTGCTCTTAGAATTTGGGT+TGG | - | Chr7:47160875-47160894 | MsG0780038463.01.T01:CDS | 35.0% | |
CATCGTATGTAACATCAAAG+TGG | + | Chr7:47160114-47160133 | None:intergenic | 35.0% | |
GAAGGTAAATGGCAAAAATG+AGG | + | Chr7:47161508-47161527 | None:intergenic | 35.0% | |
GAATTATCACACTAGGCTAA+TGG | - | Chr7:47161586-47161605 | MsG0780038463.01.T01:five_prime_UTR | 35.0% | |
GGCTTAGACATCATTCTAAA+GGG | - | Chr7:47161609-47161628 | MsG0780038463.01.T01:five_prime_UTR | 35.0% | |
TACCATGCAACTTCTAGATT+TGG | - | Chr7:47161338-47161357 | MsG0780038463.01.T01:five_prime_UTR | 35.0% | |
TACCTTGATCAGGTTTGATA+AGG | - | Chr7:47160823-47160842 | MsG0780038463.01.T01:CDS | 35.0% | |
TCATGAAATCCCGAAGTTTA+GGG | + | Chr7:47160374-47160393 | None:intergenic | 35.0% | |
TGAAAAGATCGCAAGATCTA+AGG | + | Chr7:47161091-47161110 | None:intergenic | 35.0% | |
! | AAGGTAAAGCTTTTGTAGCT+TGG | + | Chr7:47160809-47160828 | None:intergenic | 35.0% |
! | ACATTGTGAACTGCTTTGAA+CGG | + | Chr7:47160546-47160565 | None:intergenic | 35.0% |
! | AGGTAAAGCTTTTGTAGCTT+GGG | + | Chr7:47160808-47160827 | None:intergenic | 35.0% |
! | CATCATTCTAAAGGGAAATG+GGG | - | Chr7:47161617-47161636 | MsG0780038463.01.T01:five_prime_UTR | 35.0% |
! | GACATCATTCTAAAGGGAAA+TGG | - | Chr7:47161615-47161634 | MsG0780038463.01.T01:five_prime_UTR | 35.0% |
! | GTGGGTTTTCCCTTTTATAA+AGG | + | Chr7:47161739-47161758 | None:intergenic | 35.0% |
! | TATTTGGTTCCCTAAACTTC+GGG | - | Chr7:47160362-47160381 | MsG0780038463.01.T01:CDS | 35.0% |
! | TTGCTCTTAGAATTTGGGTT+GGG | - | Chr7:47160876-47160895 | MsG0780038463.01.T01:CDS | 35.0% |
! | TTTAATAGGCCGATTTACAC+GGG | - | Chr7:47160991-47161010 | MsG0780038463.01.T01:intron | 35.0% |
!! | AAGAGGATAGCTTGTTATAG+GGG | - | Chr7:47161666-47161685 | MsG0780038463.01.T01:five_prime_UTR | 35.0% |
!! | GAAAGTTTTAACGGGAAATG+CGG | + | Chr7:47160092-47160111 | None:intergenic | 35.0% |
!! | GGTTCACAATTTGATGGTTT+TGG | + | Chr7:47161880-47161899 | None:intergenic | 35.0% |
!! | GTAAGAGGATAGCTTGTTAT+AGG | - | Chr7:47161664-47161683 | MsG0780038463.01.T01:five_prime_UTR | 35.0% |
AAAGTCGCCAACTATAATCG+AGG | + | Chr7:47160762-47160781 | None:intergenic | 40.0% | |
AAGTCGCCAACTATAATCGA+GGG | + | Chr7:47160761-47160780 | None:intergenic | 40.0% | |
ACCATGACAATCAGAAACGT+TGG | - | Chr7:47161179-47161198 | MsG0780038463.01.T01:CDS | 40.0% | |
ACTAATATCCTCATGCCCAA+AGG | - | Chr7:47161220-47161239 | MsG0780038463.01.T01:exon | 40.0% | |
AGAGAATGTGACAGAGAATC+GGG | + | Chr7:47159904-47159923 | None:intergenic | 40.0% | |
AGAGAGATATATCTCTTCCG+TGG | + | Chr7:47161758-47161777 | None:intergenic | 40.0% | |
ATGCATAACCATAGGGTAAG+AGG | - | Chr7:47161462-47161481 | MsG0780038463.01.T01:five_prime_UTR | 40.0% | |
ATTATCACCCTCTTACCCTA+TGG | + | Chr7:47161473-47161492 | None:intergenic | 40.0% | |
CAACATCCGCTCTTTCAAAA+CGG | - | Chr7:47159951-47159970 | MsG0780038463.01.T01:intron | 40.0% | |
GAAGTTGACCACTATTACTC+GGG | - | Chr7:47161852-47161871 | MsG0780038463.01.T01:intron | 40.0% | |
GAATATCTTCATCTCTCCGT+CGG | - | Chr7:47160199-47160218 | MsG0780038463.01.T01:intron | 40.0% | |
GAGAGAATGTGACAGAGAAT+CGG | + | Chr7:47159905-47159924 | None:intergenic | 40.0% | |
GAGAGATATATCTCTTCCGT+GGG | + | Chr7:47161757-47161776 | None:intergenic | 40.0% | |
GCATACGACTACTCATGTAA+CGG | + | Chr7:47161428-47161447 | None:intergenic | 40.0% | |
GGGCTTAGACATCATTCTAA+AGG | - | Chr7:47161608-47161627 | MsG0780038463.01.T01:five_prime_UTR | 40.0% | |
GTGTGTTAAGAGTCTCACAT+TGG | + | Chr7:47160956-47160975 | None:intergenic | 40.0% | |
TCAGCCGAAAATTTGAATGG+CGG | - | Chr7:47159844-47159863 | MsG0780038463.01.T01:intron | 40.0% | |
TCCAACGTTTCTGATTGTCA+TGG | + | Chr7:47161183-47161202 | None:intergenic | 40.0% | |
TGCATAACCATAGGGTAAGA+GGG | - | Chr7:47161463-47161482 | MsG0780038463.01.T01:five_prime_UTR | 40.0% | |
TTACATACGATGAACCTCTC+CGG | - | Chr7:47160122-47160141 | MsG0780038463.01.T01:intron | 40.0% | |
TTGCAAGTGAGAATAGTGGT+GGG | + | Chr7:47160247-47160266 | None:intergenic | 40.0% | |
TTTGCAAGTGAGAATAGTGG+TGG | + | Chr7:47160248-47160267 | None:intergenic | 40.0% | |
! | GGTAAAGCTTTTGTAGCTTG+GGG | + | Chr7:47160807-47160826 | None:intergenic | 40.0% |
! | GGTTTTGCAAGTGAGAATAG+TGG | + | Chr7:47160251-47160270 | None:intergenic | 40.0% |
! | GTGGACTATACTAGACAGAA+TGG | + | Chr7:47159797-47159816 | None:intergenic | 40.0% |
! | TCCTCCGCCATTCAAATTTT+CGG | + | Chr7:47159851-47159870 | None:intergenic | 40.0% |
! | TGCGATCTTTTCAACTTCCT+GGG | - | Chr7:47161098-47161117 | MsG0780038463.01.T01:CDS | 40.0% |
! | TTAATAGGCCGATTTACACG+GGG | - | Chr7:47160992-47161011 | MsG0780038463.01.T01:intron | 40.0% |
! | TTGCGATCTTTTCAACTTCC+TGG | - | Chr7:47161097-47161116 | MsG0780038463.01.T01:CDS | 40.0% |
!! | ACTCATGTAACGGATCAACA+TGG | + | Chr7:47161418-47161437 | None:intergenic | 40.0% |
!! | AGAAGCACAAGAGGTTTTGT+TGG | + | Chr7:47159819-47159838 | None:intergenic | 40.0% |
!! | AGAATAGTGGTGGGCAATTT+GGG | + | Chr7:47160238-47160257 | None:intergenic | 40.0% |
AAGGTGAGCTTCTATTCGCA+AGG | - | Chr7:47161126-47161145 | MsG0780038463.01.T01:CDS | 45.0% | |
AGACATTGTGGTACAACGTC+TGG | + | Chr7:47161059-47161078 | None:intergenic | 45.0% | |
CATCGACAGCATCACCAAAT+GGG | - | Chr7:47160150-47160169 | MsG0780038463.01.T01:intron | 45.0% | |
CCATGTTTCCCCGTGTAAAT+CGG | + | Chr7:47161003-47161022 | None:intergenic | 45.0% | |
GACATTGTGGTACAACGTCT+GGG | + | Chr7:47161058-47161077 | None:intergenic | 45.0% | |
GTCTCACATTGGATGAGATG+CGG | + | Chr7:47160945-47160964 | None:intergenic | 45.0% | |
GTTCCAACTCTGCGTTTCAA+CGG | - | Chr7:47159995-47160014 | MsG0780038463.01.T01:intron | 45.0% | |
GTTGAAACGCAGAGTTGGAA+CGG | + | Chr7:47159996-47160015 | None:intergenic | 45.0% | |
TCAACTTCAAAGCGCAGAGA+AGG | + | Chr7:47160570-47160589 | None:intergenic | 45.0% | |
TGAAAGAGCGGATGTTGCAA+CGG | + | Chr7:47159948-47159967 | None:intergenic | 45.0% | |
TGTAAGTTTACACGCTGCAG+AGG | + | Chr7:47161246-47161265 | None:intergenic | 45.0% | |
TTCAACTTCCTGGGTCTACA+AGG | - | Chr7:47161107-47161126 | MsG0780038463.01.T01:CDS | 45.0% | |
! | CTGATATGGAGAAGCACAAG+AGG | + | Chr7:47159828-47159847 | None:intergenic | 45.0% |
! | GAAAATTTGAATGGCGGAGG+AGG | - | Chr7:47159850-47159869 | MsG0780038463.01.T01:intron | 45.0% |
!! | ATTTGGTGATGCTGTCGATG+GGG | + | Chr7:47160150-47160169 | None:intergenic | 45.0% |
!! | CATTTGGTGATGCTGTCGAT+GGG | + | Chr7:47160151-47160170 | None:intergenic | 45.0% |
!! | GAGAATAGTGGTGGGCAATT+TGG | + | Chr7:47160239-47160258 | None:intergenic | 45.0% |
!! | GGATGTTGCAACGGATTGTT+TGG | + | Chr7:47159939-47159958 | None:intergenic | 45.0% |
!! | TCTGCGCTTTGAAGTTGATC+AGG | - | Chr7:47160572-47160591 | MsG0780038463.01.T01:CDS | 45.0% |
!!! | AGCACAAGAGGTTTTGTTGG+TGG | + | Chr7:47159816-47159835 | None:intergenic | 45.0% |
!!! | CTTCCACCGTTTTGAAAGAG+CGG | + | Chr7:47159960-47159979 | None:intergenic | 45.0% |
!!! | TTTTGGAGCCCGAGTAATAG+TGG | + | Chr7:47161863-47161882 | None:intergenic | 45.0% |
ATGTGACAGAGAATCGGGTC+TGG | + | Chr7:47159899-47159918 | None:intergenic | 50.0% | |
CATCCGCTCTTTCAAAACGG+TGG | - | Chr7:47159954-47159973 | MsG0780038463.01.T01:intron | 50.0% | |
CCATCGACAGCATCACCAAA+TGG | - | Chr7:47160149-47160168 | MsG0780038463.01.T01:intron | 50.0% | |
CCGATTTACACGGGGAAACA+TGG | - | Chr7:47161000-47161019 | MsG0780038463.01.T01:intron | 50.0% | |
CGGGGAAACATGGACTCAAA+AGG | - | Chr7:47161010-47161029 | MsG0780038463.01.T01:intron | 50.0% | |
GCCGAAAATTTGAATGGCGG+AGG | - | Chr7:47159847-47159866 | MsG0780038463.01.T01:intron | 50.0% | |
TGTCCGTTGAAACGCAGAGT+TGG | + | Chr7:47160001-47160020 | None:intergenic | 50.0% | |
! | AATTTGAATGGCGGAGGAGG+AGG | - | Chr7:47159853-47159872 | MsG0780038463.01.T01:intron | 50.0% |
! | ATTTGAATGGCGGAGGAGGA+GGG | - | Chr7:47159854-47159873 | MsG0780038463.01.T01:intron | 50.0% |
!! | CCATTTGGTGATGCTGTCGA+TGG | + | Chr7:47160152-47160171 | None:intergenic | 50.0% |
AACGCAGAGTTGGAACGGAG+AGG | + | Chr7:47159991-47160010 | None:intergenic | 55.0% | |
GAAGCTCACCTTGTAGACCC+AGG | + | Chr7:47161118-47161137 | None:intergenic | 55.0% | |
TACACGCTGCAGAGGCCTTT+GGG | + | Chr7:47161238-47161257 | None:intergenic | 55.0% | |
TTACACGCTGCAGAGGCCTT+TGG | + | Chr7:47161239-47161258 | None:intergenic | 55.0% | |
! | GCTTTTGTAGCTTGGGGCAG+TGG | + | Chr7:47160801-47160820 | None:intergenic | 55.0% |
! | TTTGAATGGCGGAGGAGGAG+GGG | - | Chr7:47159855-47159874 | MsG0780038463.01.T01:intron | 55.0% |
!! | CATCTCTCCGTCGGCTCAAT+GGG | - | Chr7:47160208-47160227 | MsG0780038463.01.T01:intron | 55.0% |
!! | TCATCTCTCCGTCGGCTCAA+TGG | - | Chr7:47160207-47160226 | MsG0780038463.01.T01:intron | 55.0% |
GCAGAGTTGGAACGGAGAGG+TGG | + | Chr7:47159988-47160007 | None:intergenic | 60.0% | |
GGCGTCTCGTGGAAGCAGAA+CGG | + | Chr7:47160071-47160090 | None:intergenic | 60.0% | |
GGGCAAACCCATTGAGCCGA+CGG | + | Chr7:47160218-47160237 | None:intergenic | 60.0% | |
TGATGCTGTCGATGGGGCAC+CGG | + | Chr7:47160144-47160163 | None:intergenic | 60.0% | |
TGCAGAGGCCTTTGGGCATG+AGG | + | Chr7:47161231-47161250 | None:intergenic | 60.0% | |
! | TTGAATGGCGGAGGAGGAGG+GGG | - | Chr7:47159856-47159875 | MsG0780038463.01.T01:intron | 60.0% |
ACGGGAAATGCGGCGTCTCG+TGG | + | Chr7:47160082-47160101 | None:intergenic | 65.0% | |
!! | CTGTCGATGGGGCACCGGAG+AGG | + | Chr7:47160139-47160158 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 47159722 | 47161903 | 47159722 | ID=MsG0780038463.01;Name=MsG0780038463.01 |
Chr7 | mRNA | 47159722 | 47161903 | 47159722 | ID=MsG0780038463.01.T01;Parent=MsG0780038463.01;Name=MsG0780038463.01.T01;_AED=0.42;_eAED=0.42;_QI=595|0.5|0.6|0.8|0.25|0.4|5|0|230 |
Chr7 | exon | 47159722 | 47159784 | 47159722 | ID=MsG0780038463.01.T01:exon:5983;Parent=MsG0780038463.01.T01 |
Chr7 | exon | 47160339 | 47160626 | 47160339 | ID=MsG0780038463.01.T01:exon:5982;Parent=MsG0780038463.01.T01 |
Chr7 | exon | 47160791 | 47160928 | 47160791 | ID=MsG0780038463.01.T01:exon:5981;Parent=MsG0780038463.01.T01 |
Chr7 | exon | 47161032 | 47161805 | 47161032 | ID=MsG0780038463.01.T01:exon:5980;Parent=MsG0780038463.01.T01 |
Chr7 | exon | 47161879 | 47161903 | 47161879 | ID=MsG0780038463.01.T01:exon:5979;Parent=MsG0780038463.01.T01 |
Chr7 | five_prime_UTR | 47161879 | 47161903 | 47161879 | ID=MsG0780038463.01.T01:five_prime_utr;Parent=MsG0780038463.01.T01 |
Chr7 | five_prime_UTR | 47161236 | 47161805 | 47161236 | ID=MsG0780038463.01.T01:five_prime_utr;Parent=MsG0780038463.01.T01 |
Chr7 | CDS | 47161032 | 47161235 | 47161032 | ID=MsG0780038463.01.T01:cds;Parent=MsG0780038463.01.T01 |
Chr7 | CDS | 47160791 | 47160928 | 47160791 | ID=MsG0780038463.01.T01:cds;Parent=MsG0780038463.01.T01 |
Chr7 | CDS | 47160339 | 47160626 | 47160339 | ID=MsG0780038463.01.T01:cds;Parent=MsG0780038463.01.T01 |
Chr7 | CDS | 47159722 | 47159784 | 47159722 | ID=MsG0780038463.01.T01:cds;Parent=MsG0780038463.01.T01 |
Gene Sequence |
Protein sequence |