AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032766.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032766.01.T01 MTR_3g107120 46.231 199 106 1 3 200 192 390 1.32e-49 166
MsG0680032766.01.T01 MTR_3g107100 45.662 219 99 4 1 200 180 397 3.56e-49 165
MsG0680032766.01.T01 MTR_7g034090 55.488 164 66 2 41 198 147 309 7.99e-47 159
MsG0680032766.01.T01 MTR_3g107160 44.724 199 109 1 3 200 184 382 3.36e-46 157
MsG0680032766.01.T01 MTR_7g056280 41.546 207 113 3 2 200 366 572 4.67e-42 149
MsG0680032766.01.T01 MTR_7g075820 45.274 201 102 5 4 201 199 394 1.08e-41 145
MsG0680032766.01.T01 MTR_7g007080 45.320 203 101 6 6 202 182 380 1.10e-40 142
MsG0680032766.01.T01 MTR_2g007450 44.344 221 101 8 1 202 204 421 1.73e-40 142
MsG0680032766.01.T01 MTR_1g053025 42.396 217 103 7 1 201 179 389 1.91e-40 142
MsG0680032766.01.T01 MTR_7g083740 41.509 212 106 6 1 201 163 367 2.29e-38 136
MsG0680032766.01.T01 MTR_2g008320 43.269 208 102 9 3 200 225 426 7.98e-38 136
MsG0680032766.01.T01 MTR_3g106960 44.737 190 100 4 9 193 1 190 3.17e-37 129
MsG0680032766.01.T01 MTR_6g029350 41.584 202 106 6 4 200 3 197 3.42e-35 124
MsG0680032766.01.T01 MTR_1g107385 41.827 208 106 7 4 201 221 423 1.75e-34 126
MsG0680032766.01.T01 MTR_5g083890 41.791 201 99 8 3 190 196 391 1.29e-32 122
MsG0680032766.01.T01 MTR_2g005990 41.038 212 104 8 4 201 191 395 1.39e-32 121
MsG0680032766.01.T01 MTR_3g099830 41.429 210 104 8 4 201 172 374 1.52e-32 120
MsG0680032766.01.T01 MTR_3g026920 40.187 214 105 8 3 200 198 404 1.74e-32 121
MsG0680032766.01.T01 MTR_2g007550 38.942 208 105 6 11 202 135 336 2.10e-32 119
MsG0680032766.01.T01 MTR_2g008310 40.476 210 103 9 3 200 171 370 1.33e-30 115
MsG0680032766.01.T01 MTR_2g007400 37.264 212 117 8 1 200 195 402 3.08e-30 115
MsG0680032766.01.T01 MTR_2g007360 36.866 217 110 9 6 201 164 374 1.58e-28 110
MsG0680032766.01.T01 MTR_7g007340 39.706 204 99 9 3 195 161 351 5.50e-26 103
MsG0680032766.01.T01 MTR_2g007090 47.287 129 59 5 77 201 171 294 6.66e-26 101
MsG0680032766.01.T01 MTR_7g034120 38.384 198 108 6 6 198 117 305 2.41e-25 100
MsG0680032766.01.T01 MTR_4g098590 40.000 190 101 6 4 185 182 366 7.33e-24 97.4
MsG0680032766.01.T01 MTR_1g041245 36.190 210 113 9 3 198 181 383 1.22e-23 97.1
MsG0680032766.01.T01 MTR_7g056433 35.211 213 117 8 1 199 182 387 1.86e-23 96.7
MsG0680032766.01.T01 MTR_2g007610 46.099 141 69 5 64 200 13 150 2.16e-23 92.0
MsG0680032766.01.T01 MTR_7g033990 37.222 180 93 7 3 174 184 351 3.06e-23 96.3
MsG0680032766.01.T01 MTR_3g108150 34.259 216 119 5 1 199 176 385 3.34e-23 95.9
MsG0680032766.01.T01 MTR_7g088260 33.486 218 113 7 1 199 256 460 2.74e-22 94.0
MsG0680032766.01.T01 MTR_0543s0010 34.597 211 114 7 3 199 248 448 6.85e-21 89.7
MsG0680032766.01.T01 MTR_7g033915 34.259 216 103 11 3 198 166 362 7.08e-21 89.4
MsG0680032766.01.T01 MTR_1g085120 32.547 212 125 6 1 198 336 543 1.21e-20 89.4
MsG0680032766.01.T01 MTR_4g039440 31.651 218 123 6 1 198 198 409 1.24e-20 89.0
MsG0680032766.01.T01 MTR_1g085120 32.547 212 125 6 1 198 261 468 1.38e-20 89.0
MsG0680032766.01.T01 MTR_5g054920 33.516 182 99 7 4 174 7 177 2.09e-20 84.7
MsG0680032766.01.T01 MTR_6g022520 31.455 213 127 5 1 198 102 310 3.17e-20 86.7
MsG0680032766.01.T01 MTR_1g108820 33.333 222 114 10 3 200 174 385 4.22e-20 87.4
MsG0680032766.01.T01 MTR_7g032380 31.100 209 99 6 1 198 179 353 4.63e-20 87.0
MsG0680032766.01.T01 MTR_3g094980 43.119 109 59 2 86 191 26 134 4.95e-20 83.6
MsG0680032766.01.T01 MTR_5g007410 32.719 217 123 7 1 199 195 406 7.55e-20 87.0
MsG0680032766.01.T01 MTR_2g036470 33.803 213 118 7 3 198 187 393 1.02e-19 86.3
MsG0680032766.01.T01 MTR_6g022500 30.332 211 131 6 1 200 270 475 1.66e-19 85.9
MsG0680032766.01.T01 MTR_7g032370 31.100 209 117 5 1 198 157 349 2.83e-19 84.7
MsG0680032766.01.T01 MTR_6g040270 30.918 207 124 6 4 198 179 378 3.01e-19 84.7
MsG0680032766.01.T01 MTR_3g087260 35.071 211 120 6 1 199 250 455 3.31e-19 85.1
MsG0680032766.01.T01 MTR_5g012840 47.959 98 46 2 80 174 192 287 6.24e-19 83.2
MsG0680032766.01.T01 MTR_3g108560 31.308 214 122 6 3 199 182 387 1.10e-18 83.2
MsG0680032766.01.T01 MTR_0492s0020 34.536 194 109 6 4 189 249 432 1.59e-18 83.2
MsG0680032766.01.T01 MTR_7g055943 30.233 215 128 6 1 198 209 418 2.57e-18 82.4
MsG0680032766.01.T01 MTR_2g007530 42.520 127 56 3 74 200 227 336 2.99e-18 81.6
MsG0680032766.01.T01 MTR_1g053050 45.556 90 48 1 113 201 26 115 5.29e-18 76.6
MsG0680032766.01.T01 MTR_3g036250 32.536 209 110 6 1 198 175 363 5.48e-18 81.3
MsG0680032766.01.T01 MTR_6g045333 30.189 212 129 6 3 198 235 443 6.01e-18 81.6
MsG0680032766.01.T01 MTR_7g115270 40.909 132 62 4 79 198 272 399 6.99e-18 81.3
MsG0680032766.01.T01 MTR_4g080610 31.553 206 123 6 3 196 148 347 8.08e-18 80.5
MsG0680032766.01.T01 MTR_8g467800 37.121 132 74 3 76 198 319 450 1.92e-17 80.1
MsG0680032766.01.T01 MTR_3g109982 32.524 206 124 6 2 199 269 467 3.47e-17 79.7
MsG0680032766.01.T01 MTR_5g058100 31.250 208 124 6 4 198 180 381 3.54e-17 79.0
MsG0680032766.01.T01 MTR_5g008920 32.243 214 115 7 2 198 178 378 4.39e-17 79.0
MsG0680032766.01.T01 MTR_5g013500 30.455 220 130 7 1 199 146 363 5.65e-17 78.2
MsG0680032766.01.T01 MTR_7g056020 33.000 200 116 5 3 193 170 360 6.40e-17 79.0
MsG0680032766.01.T01 MTR_5g045170 31.050 219 125 8 1 202 183 392 1.08e-16 77.8
MsG0680032766.01.T01 MTR_2g020180 32.394 213 109 7 1 193 7 204 1.80e-16 75.1
MsG0680032766.01.T01 MTR_7g098480 36.190 210 114 8 1 198 185 386 2.36e-16 77.0
MsG0680032766.01.T01 MTR_7g026500 33.333 210 113 11 6 199 195 393 2.64e-16 76.6
MsG0680032766.01.T01 MTR_7g098510 33.962 212 120 9 1 199 185 389 7.30e-16 75.5
MsG0680032766.01.T01 MTR_5g039450 32.394 213 120 9 1 199 154 356 7.52e-16 75.1
MsG0680032766.01.T01 MTR_5g008950 30.986 213 116 8 3 198 164 362 1.14e-15 74.7
MsG0680032766.01.T01 MTR_5g073370 33.146 178 105 8 3 174 178 347 1.60e-15 74.3
MsG0680032766.01.T01 MTR_7g098570 34.783 207 119 6 2 197 188 389 1.64e-15 74.7
MsG0680032766.01.T01 MTR_7g056287 31.220 205 120 8 4 198 176 369 2.91e-15 73.6
MsG0680032766.01.T01 MTR_2g007500 36.250 160 87 4 4 151 176 332 3.09e-15 73.2
MsG0680032766.01.T01 MTR_1089s0010 30.583 206 124 6 4 198 179 376 3.20e-15 73.6
MsG0680032766.01.T01 MTR_7g056420 32.547 212 121 6 3 195 151 359 3.58e-15 73.9
MsG0680032766.01.T01 MTR_8g085430 34.568 162 96 6 44 196 157 317 3.96e-15 72.8
MsG0680032766.01.T01 MTR_3g082890 33.846 195 104 7 1 174 264 454 4.54e-15 73.2
MsG0680032766.01.T01 MTR_7g056430 32.547 212 121 6 3 195 151 359 4.62e-15 73.6
MsG0680032766.01.T01 MTR_7g056277 29.756 205 125 7 3 198 431 625 6.94e-15 72.8
MsG0680032766.01.T01 MTR_7g034115 40.187 107 53 2 76 174 248 351 8.11e-15 72.4
MsG0680032766.01.T01 MTR_3g107940 44.000 100 49 3 79 172 89 187 1.13e-14 71.6
MsG0680032766.01.T01 MTR_1g066830 30.841 214 123 7 3 198 178 384 1.39e-14 71.6
MsG0680032766.01.T01 MTR_5g084070 28.016 257 127 9 1 202 175 428 2.29e-14 71.2
MsG0680032766.01.T01 MTR_5g073420 32.402 179 99 8 1 174 183 344 4.70e-14 70.1
MsG0680032766.01.T01 MTR_5g045510 32.864 213 106 10 1 198 179 369 4.71e-14 70.1
MsG0680032766.01.T01 MTR_3g071850 31.280 211 118 9 3 193 198 401 5.03e-14 70.5
MsG0680032766.01.T01 MTR_7g007370 33.503 197 111 6 3 193 147 329 9.39e-14 68.9
MsG0680032766.01.T01 MTR_5g024060 37.795 127 67 4 76 194 79 201 1.24e-13 67.8
MsG0680032766.01.T01 MTR_5g092960 36.641 131 77 2 77 201 332 462 2.36e-13 68.2
MsG0680032766.01.T01 MTR_5g058000 31.731 208 122 7 1 198 175 372 2.58e-13 67.8
MsG0680032766.01.T01 MTR_8g062270 34.091 132 74 5 77 198 323 451 3.27e-13 67.8
MsG0680032766.01.T01 MTR_0009s0080 30.366 191 105 8 1 174 188 367 1.13e-12 66.2
MsG0680032766.01.T01 MTR_3g105060 29.952 207 121 7 1 199 181 371 1.28e-12 65.9
MsG0680032766.01.T01 MTR_6g022360 29.224 219 124 8 1 199 199 406 2.04e-12 65.5
MsG0680032766.01.T01 MTR_1g038710 31.795 195 113 5 25 202 261 452 2.13e-12 65.5
MsG0680032766.01.T01 MTR_5g031970 28.837 215 103 8 1 198 172 353 2.76e-12 65.1
MsG0680032766.01.T01 MTR_4g130200 28.899 218 118 8 3 187 160 373 8.12e-12 63.5
MsG0680032766.01.T01 MTR_7g081290 33.645 107 62 2 76 174 123 228 9.38e-12 62.8
MsG0680032766.01.T01 MTR_4g055990 30.531 226 128 8 2 202 259 480 9.97e-12 63.5
MsG0680032766.01.T01 MTR_6g011460 27.982 218 123 8 1 198 215 418 1.00e-11 63.5
MsG0680032766.01.T01 MTR_1377s0010 35.644 101 60 2 76 174 30 127 3.35e-11 59.3
MsG0680032766.01.T01 MTR_4g055990 30.455 220 123 8 2 194 259 475 3.39e-11 62.0
MsG0680032766.01.T01 MTR_8g014260 31.852 135 73 3 75 198 322 448 4.62e-11 61.6
MsG0680032766.01.T01 MTR_5g063950 29.630 216 128 9 1 200 154 361 7.73e-11 60.8
MsG0680032766.01.T01 MTR_8g058965 33.846 130 75 4 77 198 327 453 9.19e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032766.01.T01 AT4G13965 28.175 252 126 9 1 200 174 422 6.78e-11 61.2
MsG0680032766.01.T01 AT3G54910 30.409 171 104 5 38 199 207 371 6.98e-11 60.8
MsG0680032766.01.T01 AT3G54910 30.409 171 104 5 38 199 207 371 6.98e-11 60.8
MsG0680032766.01.T01 AT3G54910 30.409 171 104 5 38 199 207 371 6.98e-11 60.8

Find 36 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAAGATTGCAGGTTCTA+AGG 0.308965 6:+49181265 None:intergenic
AGGCTTACAATGTGAGCTTA+TGG 0.351332 6:-49181235 MsG0680032766.01.T01:CDS
TAAGAAGTTGAAAAGATTGC+AGG 0.386280 6:+49181257 None:intergenic
AAAGCTCTTCCATTCTCTAT+AGG 0.411397 6:+49181866 None:intergenic
GTGAGTAAATTCTCAAGGAT+TGG 0.427217 6:+49181924 None:intergenic
AGGCATTGTGGAACACCATC+TGG 0.444446 6:+49181297 None:intergenic
TCTAAGCTTCGAATTTGATC+AGG 0.456060 6:-49181763 MsG0680032766.01.T01:intron
TGAGTAAATTCTCAAGGATT+GGG 0.457540 6:+49181925 None:intergenic
TCAAAAGCTTGACCTTGATC+CGG 0.464635 6:-49181536 MsG0680032766.01.T01:intron
AAGCGATTCCTCGGCATCAA+AGG 0.468563 6:+49181890 None:intergenic
GAAAATTATCCTCATTTCCA+AGG 0.478307 6:-49181134 MsG0680032766.01.T01:CDS
TCCTTTAACAAACCGGATCA+AGG 0.483120 6:+49181524 None:intergenic
ACCATGAAAATTTGGAATGG+TGG 0.484824 6:-49181174 MsG0680032766.01.T01:CDS
TGAGTCAAATTATGAAAAGT+AGG 0.488316 6:+49181628 None:intergenic
ACATCGTGAACTGCTTTCAA+TGG 0.490175 6:+49181792 None:intergenic
AGCGATTCCTCGGCATCAAA+GGG 0.521005 6:+49181891 None:intergenic
GATTGGGCAACCCTTTAGAA+AGG 0.523548 6:+49181941 None:intergenic
CAAGCGGATATTGATTGTGT+TGG 0.526450 6:-49181825 MsG0680032766.01.T01:CDS
TGAAGAGGCCCTTGGAAATG+AGG 0.528767 6:+49181125 None:intergenic
AATCGCTTACCTATAGAGAA+TGG 0.531711 6:-49181875 MsG0680032766.01.T01:CDS
CTCAGCTGGAGCTTATATCT+CGG 0.548471 6:-49181609 MsG0680032766.01.T01:CDS
CTTAAATAACTTGATCCAAG+CGG 0.552272 6:-49181841 MsG0680032766.01.T01:CDS
CGATGTGCCCTTTGATGCCG+AGG 0.573700 6:-49181898 MsG0680032766.01.T01:CDS
AAAATTATCCTCATTTCCAA+GGG 0.574285 6:-49181133 MsG0680032766.01.T01:CDS
AAAACCATGAAAATTTGGAA+TGG 0.576079 6:-49181177 MsG0680032766.01.T01:CDS
CAACACAATCAATATCCGCT+TGG 0.576658 6:+49181826 None:intergenic
TATAAGCTCACACGTTGAAG+AGG 0.578575 6:+49181110 None:intergenic
AGGTGTAATGAAAGGCATTG+TGG 0.587898 6:+49181285 None:intergenic
TCTATAGGTAAGCGATTCCT+CGG 0.589341 6:+49181881 None:intergenic
ATTAACAGACGGACATGGCA+TGG 0.593325 6:-49181350 MsG0680032766.01.T01:intron
CGTATGTGAGTAAATTCTCA+AGG 0.603107 6:+49181919 None:intergenic
TCACACGTTGAAGAGGCCCT+TGG 0.607209 6:+49181117 None:intergenic
GCATTATTAACAGACGGACA+TGG 0.612755 6:-49181355 MsG0680032766.01.T01:intron
AGGTTCTAAGGTGTAATGAA+AGG 0.614234 6:+49181277 None:intergenic
CTTACAATGTGAGCTTATGG+TGG 0.641273 6:-49181232 MsG0680032766.01.T01:CDS
AATGTGAGCTTATGGTGGCG+AGG 0.690729 6:-49181227 MsG0680032766.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATTAAAACACATAA+AGG + Chr6:49181658-49181677 None:intergenic 10.0%
!! AAGACAAATTGTTAGAAAAT+AGG + Chr6:49181351-49181370 None:intergenic 20.0%
!! AGACAAATTGTTAGAAAATA+GGG + Chr6:49181350-49181369 None:intergenic 20.0%
!! TACTTACTATAGAATTGAAT+AGG - Chr6:49181308-49181327 MsG0680032766.01.T01:CDS 20.0%
!! TCTTAAAAACCATGAAAATT+TGG - Chr6:49181855-49181874 MsG0680032766.01.T01:CDS 20.0%
!!! ATTTCTCATACTGATTTTAT+AGG + Chr6:49181598-49181617 None:intergenic 20.0%
!!! GATAATTTTCTTTCTATTTC+AGG + Chr6:49181893-49181912 None:intergenic 20.0%
!!! TTTCTCATACTGATTTTATA+GGG + Chr6:49181597-49181616 None:intergenic 20.0%
! AAAACCATGAAAATTTGGAA+TGG - Chr6:49181860-49181879 MsG0680032766.01.T01:CDS 25.0%
! AAAATTATCCTCATTTCCAA+GGG - Chr6:49181904-49181923 MsG0680032766.01.T01:CDS 25.0%
! GATATTATCCTTTAACAAAC+CGG + Chr6:49181523-49181542 None:intergenic 25.0%
! TAGAGATGACAATGAAAAAT+GGG - Chr6:49181712-49181731 MsG0680032766.01.T01:intron 25.0%
! TGAGTCAAATTATGAAAAGT+AGG + Chr6:49181412-49181431 None:intergenic 25.0%
!! TTTTGTGCATTATTAACAGA+CGG - Chr6:49181676-49181695 MsG0680032766.01.T01:intron 25.0%
CTAGAGATGACAATGAAAAA+TGG - Chr6:49181711-49181730 MsG0680032766.01.T01:intron 30.0%
CTTAAATAACTTGATCCAAG+CGG - Chr6:49181196-49181215 MsG0680032766.01.T01:CDS 30.0%
GAAAATTATCCTCATTTCCA+AGG - Chr6:49181903-49181922 MsG0680032766.01.T01:CDS 30.0%
TAAGAAGTTGAAAAGATTGC+AGG + Chr6:49181783-49181802 None:intergenic 30.0%
TGAGTAAATTCTCAAGGATT+GGG + Chr6:49181115-49181134 None:intergenic 30.0%
TTTGTCTTTGTGCATATTCT+AGG - Chr6:49181363-49181382 MsG0680032766.01.T01:intron 30.0%
! TGCAATCTTTTCAACTTCTT+AGG - Chr6:49181782-49181801 MsG0680032766.01.T01:CDS 30.0%
! TTTTCATAATTTGACTCAGC+TGG - Chr6:49181414-49181433 MsG0680032766.01.T01:intron 30.0%
AAAGCTCTTCCATTCTCTAT+AGG + Chr6:49181174-49181193 None:intergenic 35.0%
AATCGCTTACCTATAGAGAA+TGG - Chr6:49181162-49181181 MsG0680032766.01.T01:CDS 35.0%
CGTATGTGAGTAAATTCTCA+AGG + Chr6:49181121-49181140 None:intergenic 35.0%
GTGAGTAAATTCTCAAGGAT+TGG + Chr6:49181116-49181135 None:intergenic 35.0%
TCTAAGCTTCGAATTTGATC+AGG - Chr6:49181274-49181293 MsG0680032766.01.T01:CDS 35.0%
TGAAAAGATTGCAGGTTCTA+AGG + Chr6:49181775-49181794 None:intergenic 35.0%
! ACCATGAAAATTTGGAATGG+TGG - Chr6:49181863-49181882 MsG0680032766.01.T01:CDS 35.0%
! ACGCTCTTCAAATTTTCGTT+AGG - Chr6:49181561-49181580 MsG0680032766.01.T01:CDS 35.0%
! TCCACCATTCCAAATTTTCA+TGG + Chr6:49181867-49181886 None:intergenic 35.0%
!! AGGTTCTAAGGTGTAATGAA+AGG + Chr6:49181763-49181782 None:intergenic 35.0%
ACATCGTGAACTGCTTTCAA+TGG + Chr6:49181248-49181267 None:intergenic 40.0%
AGGCTTACAATGTGAGCTTA+TGG - Chr6:49181802-49181821 MsG0680032766.01.T01:CDS 40.0%
CAACACAATCAATATCCGCT+TGG + Chr6:49181214-49181233 None:intergenic 40.0%
CTTACAATGTGAGCTTATGG+TGG - Chr6:49181805-49181824 MsG0680032766.01.T01:CDS 40.0%
GCATTATTAACAGACGGACA+TGG - Chr6:49181682-49181701 MsG0680032766.01.T01:intron 40.0%
TATAAGCTCACACGTTGAAG+AGG + Chr6:49181930-49181949 None:intergenic 40.0%
TCAAAAGCTTGACCTTGATC+CGG - Chr6:49181501-49181520 MsG0680032766.01.T01:intron 40.0%
TCCTTTAACAAACCGGATCA+AGG + Chr6:49181516-49181535 None:intergenic 40.0%
TCTATAGGTAAGCGATTCCT+CGG + Chr6:49181159-49181178 None:intergenic 40.0%
! CAAGCGGATATTGATTGTGT+TGG - Chr6:49181212-49181231 MsG0680032766.01.T01:CDS 40.0%
!! ACCTTGATCCGGTTTGTTAA+AGG - Chr6:49181512-49181531 MsG0680032766.01.T01:intron 40.0%
!! AGGTGTAATGAAAGGCATTG+TGG + Chr6:49181755-49181774 None:intergenic 40.0%
!!! AGGTCAAGCTTTTGAAGCTT+AGG + Chr6:49181496-49181515 None:intergenic 40.0%
!!! GGTCAAGCTTTTGAAGCTTA+GGG + Chr6:49181495-49181514 None:intergenic 40.0%
ATTAACAGACGGACATGGCA+TGG - Chr6:49181687-49181706 MsG0680032766.01.T01:intron 45.0%
CTCAGCTGGAGCTTATATCT+CGG - Chr6:49181428-49181447 MsG0680032766.01.T01:intron 45.0%
GAAAAATGGGTAGAGCCAGA+TGG - Chr6:49181725-49181744 MsG0680032766.01.T01:intron 45.0%
GTGTGTTAAAAGTCCCACAC+TGG + Chr6:49181634-49181653 None:intergenic 45.0%
! GATTGGGCAACCCTTTAGAA+AGG + Chr6:49181099-49181118 None:intergenic 45.0%
AAGCGATTCCTCGGCATCAA+AGG + Chr6:49181150-49181169 None:intergenic 50.0%
AGCGATTCCTCGGCATCAAA+GGG + Chr6:49181149-49181168 None:intergenic 50.0%
TGAAGAGGCCCTTGGAAATG+AGG + Chr6:49181915-49181934 None:intergenic 50.0%
TTCGCAGTCTCATCCAGTGT+GGG - Chr6:49181618-49181637 MsG0680032766.01.T01:CDS 50.0%
TTTCGCAGTCTCATCCAGTG+TGG - Chr6:49181617-49181636 MsG0680032766.01.T01:CDS 50.0%
! AATGTGAGCTTATGGTGGCG+AGG - Chr6:49181810-49181829 MsG0680032766.01.T01:CDS 50.0%
! AGGCATTGTGGAACACCATC+TGG + Chr6:49181743-49181762 None:intergenic 50.0%
!!! GCTTTTGAAGCTTAGGGCAG+CGG + Chr6:49181489-49181508 None:intergenic 50.0%
TCACACGTTGAAGAGGCCCT+TGG + Chr6:49181923-49181942 None:intergenic 55.0%
CGATGTGCCCTTTGATGCCG+AGG - Chr6:49181139-49181158 MsG0680032766.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 49181092 49181967 49181092 ID=MsG0680032766.01;Name=MsG0680032766.01
Chr6 mRNA 49181092 49181967 49181092 ID=MsG0680032766.01.T01;Parent=MsG0680032766.01;Name=MsG0680032766.01.T01;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|3|0|204
Chr6 exon 49181764 49181967 49181764 ID=MsG0680032766.01.T01:exon:11092;Parent=MsG0680032766.01.T01
Chr6 exon 49181537 49181674 49181537 ID=MsG0680032766.01.T01:exon:11091;Parent=MsG0680032766.01.T01
Chr6 exon 49181092 49181364 49181092 ID=MsG0680032766.01.T01:exon:11090;Parent=MsG0680032766.01.T01
Chr6 CDS 49181764 49181967 49181764 ID=MsG0680032766.01.T01:cds;Parent=MsG0680032766.01.T01
Chr6 CDS 49181537 49181674 49181537 ID=MsG0680032766.01.T01:cds;Parent=MsG0680032766.01.T01
Chr6 CDS 49181092 49181364 49181092 ID=MsG0680032766.01.T01:cds;Parent=MsG0680032766.01.T01
Gene Sequence

>MsG0680032766.01.T01

ATGTCCTTTCTAAAGGGTTGCCCAATCCTTGAGAATTTACTCACATACGATGTGCCCTTTGATGCCGAGGAATCGCTTACCTATAGAGAATGGAAGAGCTTTTGCTTAAATAACTTGATCCAAGCGGATATTGATTGTGTTGGTTCTTACTTTCCATTGAAAGCAGTTCACGATGTACTGTCTCTAAGCTTCGAATTTGATCAGGATCATTTCTGCAATGATTTTCTTCCTACTTTTCATAATTTGACTCAGCTGGAGCTTATATCTCGGAATTTTAGTTTGAAATTCTTAATAGAAGTTCTCAACCGCTGCCCTAAGCTTCAAAAGCTTGACCTTGATCCGACGGACATGGCATGGACTAGAGATGACAATGAAAAATGGGTAGAGCCAGATGGTGTTCCACAATGCCTTTCATTACACCTTAGAACCTGCAATCTTTTCAACTTCTTAGGCTTACAATGTGAGCTTATGGTGGCGAGGTATATTTTGAAGAATGCAATAGTCTTAAAAACCATGAAAATTTGGAATGGTGGACAACCTGAAATAGAAAGAAAATTATCCTCATTTCCAAGGGCCTCTTCAACGTGTGAGCTTATAGTTTATGATGATTCATGA
Protein sequence

>MsG0680032766.01.T01

MSFLKGCPILENLLTYDVPFDAEESLTYREWKSFCLNNLIQADIDCVGSYFPLKAVHDVLSLSFEFDQDHFCNDFLPTFHNLTQLELISRNFSLKFLIEVLNRCPKLQKLDLDPTDMAWTRDDNEKWVEPDGVPQCLSLHLRTCNLFNFLGLQCELMVARYILKNAIVLKTMKIWNGGQPEIERKLSSFPRASSTCELIVYDDS*