AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780037562.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037562.01.T01 MTR_3g107100 45.955 309 121 8 3 276 101 398 2.10e-64 207
MsG0780037562.01.T01 MTR_3g107160 41.297 293 143 5 4 278 104 385 5.26e-62 201
MsG0780037562.01.T01 MTR_3g107120 43.206 287 136 5 3 273 113 388 8.11e-62 200
MsG0780037562.01.T01 MTR_2g007450 42.405 316 127 9 2 273 113 417 1.02e-61 201
MsG0780037562.01.T01 MTR_2g007400 41.424 309 136 12 2 277 108 404 1.54e-56 187
MsG0780037562.01.T01 MTR_1g053025 39.404 302 139 10 2 273 99 386 1.57e-55 184
MsG0780037562.01.T01 MTR_7g034090 60.000 180 41 7 118 278 147 314 3.68e-54 181
MsG0780037562.01.T01 MTR_7g007080 41.958 286 138 8 4 273 103 376 1.50e-50 171
MsG0780037562.01.T01 MTR_1g107385 42.157 306 129 13 2 273 129 420 2.94e-50 171
MsG0780037562.01.T01 MTR_7g075820 40.129 309 127 10 5 274 103 392 5.62e-50 169
MsG0780037562.01.T01 MTR_2g005990 40.667 300 137 10 5 274 105 393 1.72e-49 168
MsG0780037562.01.T01 MTR_3g099830 43.866 269 110 11 30 273 119 371 9.83e-47 160
MsG0780037562.01.T01 MTR_2g008320 40.441 272 125 7 28 277 172 428 6.05e-46 160
MsG0780037562.01.T01 MTR_5g083890 40.397 302 128 13 2 265 104 391 1.28e-44 158
MsG0780037562.01.T01 MTR_7g083740 37.671 292 144 9 4 275 93 366 3.49e-44 154
MsG0780037562.01.T01 MTR_5g058000 39.929 283 142 5 8 275 105 374 6.46e-44 153
MsG0780037562.01.T01 MTR_2g007360 38.591 298 128 15 17 277 96 375 3.57e-43 151
MsG0780037562.01.T01 MTR_2g008310 38.971 272 127 8 28 277 118 372 1.77e-42 150
MsG0780037562.01.T01 MTR_2g007090 42.562 242 111 10 41 275 73 293 3.61e-42 146
MsG0780037562.01.T01 MTR_5g058100 36.824 296 147 8 8 278 106 386 6.72e-40 143
MsG0780037562.01.T01 MTR_3g026920 35.016 317 127 10 3 273 119 402 7.41e-40 143
MsG0780037562.01.T01 MTR_4g039440 35.855 304 154 10 4 278 123 414 4.28e-39 141
MsG0780037562.01.T01 MTR_4g098590 36.918 279 140 6 2 255 93 360 1.86e-38 139
MsG0780037562.01.T01 MTR_7g056280 38.389 211 106 3 80 273 367 570 1.93e-38 142
MsG0780037562.01.T01 MTR_1g066830 37.075 294 146 6 8 275 106 386 2.36e-38 139
MsG0780037562.01.T01 MTR_6g045333 36.120 299 154 9 4 275 157 445 2.16e-37 137
MsG0780037562.01.T01 MTR_6g040270 34.256 289 157 7 8 276 106 381 9.80e-37 134
MsG0780037562.01.T01 MTR_7g034120 35.374 294 157 8 4 276 27 308 1.01e-36 132
MsG0780037562.01.T01 MTR_7g007340 38.321 274 131 13 18 270 95 351 1.37e-35 131
MsG0780037562.01.T01 MTR_2g007500 38.039 255 117 7 2 226 89 332 3.60e-35 129
MsG0780037562.01.T01 MTR_1089s0010 33.110 299 149 7 8 278 106 381 4.28e-35 130
MsG0780037562.01.T01 MTR_5g007410 34.471 293 154 7 8 273 124 405 5.04e-35 131
MsG0780037562.01.T01 MTR_7g098510 35.235 298 155 10 4 275 105 390 5.75e-35 130
MsG0780037562.01.T01 MTR_7g032370 36.842 285 155 13 4 275 79 351 2.21e-34 127
MsG0780037562.01.T01 MTR_7g055943 35.065 308 148 10 4 278 135 423 2.35e-34 129
MsG0780037562.01.T01 MTR_5g073420 36.149 296 137 13 8 276 110 380 3.26e-34 127
MsG0780037562.01.T01 MTR_1g085120 34.000 300 160 6 4 278 187 473 4.44e-34 129
MsG0780037562.01.T01 MTR_0543s0010 35.739 291 154 11 4 275 173 449 8.26e-34 127
MsG0780037562.01.T01 MTR_1g085120 34.000 300 160 6 4 278 262 548 1.10e-33 129
MsG0780037562.01.T01 MTR_6g022500 32.986 288 163 5 8 276 200 476 1.15e-33 127
MsG0780037562.01.T01 MTR_3g087260 38.652 282 149 9 12 275 181 456 5.14e-33 125
MsG0780037562.01.T01 MTR_2g036470 35.333 300 152 9 4 275 110 395 7.75e-32 121
MsG0780037562.01.T01 MTR_7g032380 35.211 284 143 12 4 275 101 355 7.89e-32 120
MsG0780037562.01.T01 MTR_7g088260 35.880 301 149 13 4 276 178 462 8.08e-32 122
MsG0780037562.01.T01 MTR_1g041245 35.333 300 152 13 4 275 100 385 1.16e-31 121
MsG0780037562.01.T01 MTR_0492s0020 35.361 263 143 9 4 253 173 421 2.34e-31 121
MsG0780037562.01.T01 MTR_2g007550 35.385 260 122 10 18 273 115 332 5.46e-31 118
MsG0780037562.01.T01 MTR_7g026500 29.773 309 163 10 2 275 105 394 6.37e-31 119
MsG0780037562.01.T01 MTR_6g022520 35.117 299 159 7 4 278 28 315 7.55e-31 117
MsG0780037562.01.T01 MTR_3g071850 32.660 297 161 9 4 272 120 405 1.09e-30 121
MsG0780037562.01.T01 MTR_7g098570 35.616 292 154 9 4 271 107 388 1.76e-30 119
MsG0780037562.01.T01 MTR_3g036250 36.299 281 157 11 4 273 94 363 1.79e-30 117
MsG0780037562.01.T01 MTR_7g033990 32.203 295 151 12 4 268 100 375 2.23e-29 115
MsG0780037562.01.T01 MTR_6g029350 38.073 218 95 10 79 276 1 198 2.81e-29 111
MsG0780037562.01.T01 MTR_3g108150 35.714 294 146 9 12 275 106 386 7.98e-29 113
MsG0780037562.01.T01 MTR_7g098480 34.459 296 158 8 4 275 105 388 8.71e-29 114
MsG0780037562.01.T01 MTR_7g115270 33.013 312 158 11 2 273 99 399 9.65e-29 113
MsG0780037562.01.T01 MTR_7g033915 32.877 292 149 13 4 275 100 364 1.48e-28 112
MsG0780037562.01.T01 MTR_6g011460 33.333 297 162 8 4 278 141 423 2.06e-28 112
MsG0780037562.01.T01 MTR_5g008950 32.364 275 164 8 15 275 98 364 2.16e-28 112
MsG0780037562.01.T01 MTR_3g106960 39.130 207 97 7 86 274 1 196 3.18e-28 108
MsG0780037562.01.T01 MTR_0009s0080 35.227 264 136 8 8 249 117 367 1.19e-27 110
MsG0780037562.01.T01 MTR_2g007610 42.953 149 73 3 126 273 11 148 1.44e-27 105
MsG0780037562.01.T01 MTR_5g063950 34.532 278 157 8 14 273 89 359 2.03e-27 109
MsG0780037562.01.T01 MTR_3g108560 31.741 293 170 6 4 275 105 388 2.27e-27 109
MsG0780037562.01.T01 MTR_1g108800 34.021 291 149 12 7 273 68 339 7.06e-27 107
MsG0780037562.01.T01 MTR_5g045510 34.767 279 155 11 7 273 106 369 1.53e-26 107
MsG0780037562.01.T01 MTR_6g022360 34.014 294 161 7 4 275 125 407 1.93e-26 107
MsG0780037562.01.T01 MTR_5g031970 34.164 281 149 10 7 274 97 354 2.04e-26 106
MsG0780037562.01.T01 MTR_5g045170 31.987 297 156 10 7 273 108 388 3.59e-26 106
MsG0780037562.01.T01 MTR_7g056433 33.557 298 162 12 4 275 101 388 1.90e-25 104
MsG0780037562.01.T01 MTR_5g008920 34.155 284 157 10 10 275 109 380 1.95e-25 104
MsG0780037562.01.T01 MTR_7g034115 33.333 270 159 10 4 259 100 362 3.92e-25 103
MsG0780037562.01.T01 MTR_3g094980 51.546 97 46 1 153 249 22 117 5.14e-25 98.6
MsG0780037562.01.T01 MTR_1g108820 30.844 308 155 12 4 273 96 383 6.14e-25 102
MsG0780037562.01.T01 MTR_3g023630 31.673 281 163 9 9 273 104 371 1.99e-24 101
MsG0780037562.01.T01 MTR_5g012840 31.939 263 115 10 4 249 72 287 3.29e-24 99.8
MsG0780037562.01.T01 MTR_6g044572 32.734 278 151 7 12 275 132 387 3.93e-24 100
MsG0780037562.01.T01 MTR_3g105060 31.690 284 157 7 9 275 109 372 4.10e-24 100
MsG0780037562.01.T01 MTR_7g056420 33.808 281 153 12 4 270 98 359 4.70e-24 102
MsG0780037562.01.T01 MTR_7g056430 33.808 281 153 12 4 270 98 359 5.32e-24 102
MsG0780037562.01.T01 MTR_7g114710 31.849 292 143 12 8 275 104 363 7.45e-24 99.4
MsG0780037562.01.T01 MTR_6g044560 32.734 278 151 7 12 275 308 563 2.66e-23 99.4
MsG0780037562.01.T01 MTR_7g056020 37.885 227 122 7 33 249 124 341 2.68e-23 99.8
MsG0780037562.01.T01 MTR_2g007530 31.469 286 100 8 4 273 129 334 4.30e-23 97.1
MsG0780037562.01.T01 MTR_7g007370 33.681 288 148 11 5 272 69 333 7.84e-23 96.3
MsG0780037562.01.T01 MTR_5g039450 31.724 290 139 10 8 273 101 355 2.25e-22 95.5
MsG0780037562.01.T01 MTR_3g040700 34.538 249 140 11 4 242 132 367 1.47e-21 94.0
MsG0780037562.01.T01 MTR_5g013500 31.418 261 118 8 56 275 124 364 1.49e-21 93.2
MsG0780037562.01.T01 MTR_5g039490 30.605 281 158 7 8 276 121 376 1.59e-21 93.2
MsG0780037562.01.T01 MTR_3g107140 53.271 107 44 3 3 105 93 197 1.59e-21 90.1
MsG0780037562.01.T01 MTR_3g109982 35.424 271 151 10 15 269 207 469 1.86e-21 94.4
MsG0780037562.01.T01 MTR_5g073370 35.000 240 121 8 27 249 126 347 3.58e-21 92.4
MsG0780037562.01.T01 MTR_5g054920 33.505 194 93 7 76 250 2 178 3.43e-20 86.3
MsG0780037562.01.T01 MTR_5g073340 30.833 240 127 7 4 218 75 300 4.27e-20 88.2
MsG0780037562.01.T01 MTR_7g075800 29.703 303 143 13 3 245 99 391 4.85e-20 90.1
MsG0780037562.01.T01 MTR_5g061680 35.160 219 103 7 6 217 108 294 6.71e-20 88.2
MsG0780037562.01.T01 MTR_5g065100 33.929 280 147 12 4 275 99 348 8.53e-19 85.9
MsG0780037562.01.T01 MTR_1377s0010 40.909 110 53 2 140 249 30 127 1.01e-18 80.9
MsG0780037562.01.T01 MTR_7g056287 30.000 290 168 12 5 276 100 372 1.84e-18 84.3
MsG0780037562.01.T01 MTR_7g056277 30.000 290 168 12 5 276 356 628 2.76e-18 84.7
MsG0780037562.01.T01 MTR_5g024060 34.722 144 79 4 129 268 68 200 1.53e-17 80.5
MsG0780037562.01.T01 MTR_7g034110 33.503 197 81 9 58 249 159 310 5.57e-17 80.1
MsG0780037562.01.T01 MTR_1g053050 48.101 79 40 1 196 273 34 112 4.10e-16 73.2
MsG0780037562.01.T01 MTR_2g020180 35.664 143 68 4 140 276 91 215 7.56e-16 75.1
MsG0780037562.01.T01 MTR_3g082890 27.076 277 166 6 4 249 183 454 1.83e-15 76.3
MsG0780037562.01.T01 MTR_3g107940 41.538 130 59 4 143 268 89 205 1.34e-14 73.2
MsG0780037562.01.T01 MTR_1g085120 32.338 201 111 4 4 185 274 468 2.29e-14 73.2
MsG0780037562.01.T01 MTR_4g080610 33.333 210 116 6 56 249 124 325 6.09e-14 71.2
MsG0780037562.01.T01 MTR_3g115430 33.333 120 71 4 159 275 11 124 1.82e-13 66.2
MsG0780037562.01.T01 MTR_7g081290 32.143 140 86 4 140 276 123 256 1.84e-13 68.9
MsG0780037562.01.T01 MTR_7g021990 30.252 238 154 5 29 256 164 399 2.38e-13 70.1
MsG0780037562.01.T01 MTR_7g021950 30.252 238 154 5 29 256 164 399 2.49e-13 70.1
MsG0780037562.01.T01 MTR_3g108560 30.964 197 117 4 4 185 105 297 4.29e-13 68.6
MsG0780037562.01.T01 MTR_8g085430 27.165 254 112 8 4 249 108 296 1.86e-12 67.0
MsG0780037562.01.T01 MTR_5g033200 35.652 115 61 3 135 249 45 146 7.63e-12 63.2
MsG0780037562.01.T01 MTR_5g061410 34.197 193 101 7 15 189 87 271 3.07e-11 62.8
MsG0780037562.01.T01 MTR_5g076150 30.837 227 111 8 20 213 13 226 4.51e-11 62.0
MsG0780037562.01.T01 MTR_8g014260 31.967 122 70 2 162 277 338 452 5.18e-11 63.2
MsG0780037562.01.T01 MTR_3g071790 27.778 198 111 7 64 243 19 202 5.26e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037562.01.T01 AT3G54910 28.146 302 152 8 29 275 81 372 4.86e-14 71.6
MsG0780037562.01.T01 AT3G54910 28.146 302 152 8 29 275 81 372 4.86e-14 71.6
MsG0780037562.01.T01 AT3G54910 28.146 302 152 8 29 275 81 372 4.86e-14 71.6
MsG0780037562.01.T01 AT3G26920 30.325 277 156 11 25 275 35 300 8.95e-14 70.5
MsG0780037562.01.T01 AT3G26920 28.409 264 147 11 23 275 107 339 3.76e-12 66.2
MsG0780037562.01.T01 AT3G26920 28.409 264 147 11 23 275 107 339 3.76e-12 66.2
MsG0780037562.01.T01 AT5G38565 28.837 215 128 8 69 277 147 342 6.88e-12 65.5

Find 51 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCATTGCGGAACAGAATT+TGG 0.146609 7:+28452296 None:intergenic
AGTTGCCAATCTCTCTATTA+TGG 0.257084 7:-28452603 MsG0780037562.01.T01:CDS
GGCATTGCGGAACAGAATTT+GGG 0.302933 7:+28452297 None:intergenic
GTTATTAAATCCTCAAGAAT+TGG 0.328602 7:+28452938 None:intergenic
TTGACCCATTTGGTAACATT+TGG 0.339271 7:+28453184 None:intergenic
AAAGTAGGAATTAAACCATA+TGG 0.360743 7:+28452666 None:intergenic
ATGACGCAGTGGAGGTATAT+TGG 0.361691 7:-28452352 MsG0780037562.01.T01:CDS
TCCAACCATAATAGAGAGAT+TGG 0.367134 7:+28452598 None:intergenic
TAGCACAAAATTGACCCATT+TGG 0.406336 7:+28453174 None:intergenic
ACAAAATATCTTCTAAATGA+AGG 0.413273 7:+28453002 None:intergenic
AGTAAGAAGTAAGCACCAAT+TGG 0.423999 7:+28452631 None:intergenic
AGAAGATGACATAGAAAGTT+GGG 0.427232 7:-28452324 MsG0780037562.01.T01:CDS
TGTTACCAAATGTTACCAAA+TGG 0.430769 7:-28453189 MsG0780037562.01.T01:CDS
TTCTAGGTTCGTGACCCATA+TGG 0.439238 7:-28452681 MsG0780037562.01.T01:intron
GCAAAAGCTTGACATTGATC+AGG 0.441469 7:-28452538 MsG0780037562.01.T01:intron
TACACGTTGCAGAGGCCCTT+GGG 0.442709 7:+28452117 None:intergenic
GAGAAGATGACATAGAAAGT+TGG 0.469949 7:-28452325 MsG0780037562.01.T01:CDS
TGGGTCAAATTATGAAAAGT+AGG 0.474008 7:+28452651 None:intergenic
AACATAAAATCTTCAAGTGT+AGG 0.489170 7:+28452977 None:intergenic
GTTACCAAATGTTACCAAAT+GGG 0.489403 7:-28453188 MsG0780037562.01.T01:CDS
GCCAATCTCTCTATTATGGT+TGG 0.492510 7:-28452599 MsG0780037562.01.T01:CDS
TTCTCTGTTAAAGATTGTCA+TGG 0.504016 7:+28452172 None:intergenic
TTCAACTTCTTAGGCCTACC+AGG 0.504356 7:-28452245 MsG0780037562.01.T01:CDS
CAAAATATCTTCTAAATGAA+GGG 0.505191 7:+28453003 None:intergenic
TTGCAACTGAGAATACTGAT+AGG 0.512274 7:+28453103 None:intergenic
CTATGTCAACATTGAGATGA+AGG 0.512718 7:+28453134 None:intergenic
TTACACGTTGCAGAGGCCCT+TGG 0.513272 7:+28452116 None:intergenic
TAGAAAAGCTTGAGAACCAC+AGG 0.517485 7:+28453076 None:intergenic
CTTCTTAGGCCTACCAGGTA+GGG 0.528459 7:-28452240 MsG0780037562.01.T01:CDS
AAGTAGGAATTAAACCATAT+GGG 0.530950 7:+28452667 None:intergenic
ACATAAAATCTTCAAGTGTA+GGG 0.538607 7:+28452978 None:intergenic
GTAAGAAGTAAGCACCAATT+GGG 0.540707 7:+28452632 None:intergenic
AAATGGATGTCCAATTCTTG+AGG 0.541020 7:-28452948 MsG0780037562.01.T01:CDS
TGCAGAGGCCCTTGGGCATG+AGG 0.553371 7:+28452124 None:intergenic
TGAAAAGATTACAAGTTCGA+AGG 0.557694 7:+28452264 None:intergenic
ACTTCTTAGGCCTACCAGGT+AGG 0.559158 7:-28452241 MsG0780037562.01.T01:CDS
TCATACTGAACTGCTTTCAA+CGG 0.561934 7:+28452806 None:intergenic
ATTTATTATCCTCATGCCCA+AGG 0.564669 7:-28452133 MsG0780037562.01.T01:CDS
AGCGCAATCAATATCAACTC+TGG 0.568949 7:+28452841 None:intergenic
AAGTTCGAAGGTGTAATGAA+AGG 0.585556 7:+28452276 None:intergenic
CTTAAGTTTACACGTTGCAG+AGG 0.598983 7:+28452109 None:intergenic
TTTATTATCCTCATGCCCAA+GGG 0.602408 7:-28452132 MsG0780037562.01.T01:CDS
GCATTGCGGAACAGAATTTG+GGG 0.602572 7:+28452298 None:intergenic
TTTGCAAGCATAACCCTACC+TGG 0.615646 7:+28452227 None:intergenic
CAAGCATAACCCTACCTGGT+AGG 0.617982 7:+28452231 None:intergenic
TTTACAGGATGACGCAGTGG+AGG 0.646548 7:-28452360 MsG0780037562.01.T01:intron
AGGTGTAATGAAAGGCATTG+CGG 0.661015 7:+28452284 None:intergenic
TTGTTTACAGGATGACGCAG+TGG 0.683814 7:-28452363 MsG0780037562.01.T01:intron
TCTCAGTTGCAAAACCCCTG+TGG 0.689296 7:-28453092 MsG0780037562.01.T01:CDS
AGAAAAGCTTGAGAACCACA+GGG 0.702860 7:+28453077 None:intergenic
GAAAAGCTTGAGAACCACAG+GGG 0.758433 7:+28453078 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATAATAAATGTTTTATGTT+AGG + Chr7:28453141-28453160 None:intergenic 15.0%
!!! GATTTTATGTTACTTTTAAA+TGG - Chr7:28452319-28452338 MsG0780037562.01.T01:CDS 15.0%
!! ACAAAATATCTTCTAAATGA+AGG + Chr7:28452285-28452304 None:intergenic 20.0%
!! CAAAATATCTTCTAAATGAA+GGG + Chr7:28452284-28452303 None:intergenic 20.0%
!!! AGATATAACTTTTGATTATC+TGG - Chr7:28452396-28452415 MsG0780037562.01.T01:intron 20.0%
!!! TTCTAAAAAACAAGAAAGAA+AGG + Chr7:28452554-28452573 None:intergenic 20.0%
! AAAGTAGGAATTAAACCATA+TGG + Chr7:28452621-28452640 None:intergenic 25.0%
! AACATAAAATCTTCAAGTGT+AGG + Chr7:28452310-28452329 None:intergenic 25.0%
! AAGTAGGAATTAAACCATAT+GGG + Chr7:28452620-28452639 None:intergenic 25.0%
! ACATAAAATCTTCAAGTGTA+GGG + Chr7:28452309-28452328 None:intergenic 25.0%
! GTTATTAAATCCTCAAGAAT+TGG + Chr7:28452349-28452368 None:intergenic 25.0%
! TAGACATAACTCTACAATAT+TGG - Chr7:28452831-28452850 MsG0780037562.01.T01:CDS 25.0%
! TATTCACACTCTTAGAATTT+GGG - Chr7:28452807-28452826 MsG0780037562.01.T01:intron 25.0%
! TTATTCACACTCTTAGAATT+TGG - Chr7:28452806-28452825 MsG0780037562.01.T01:intron 25.0%
! TTTATTGTTCTGCATATTCT+AGG - Chr7:28452587-28452606 MsG0780037562.01.T01:CDS 25.0%
!! ATTTTATGTGCATTGTTTAC+AGG - Chr7:28452909-28452928 MsG0780037562.01.T01:CDS 25.0%
!! TGTAATCTTTTCAACTTCTT+AGG - Chr7:28453030-28453049 MsG0780037562.01.T01:CDS 25.0%
!! TTTTCATAATTTGACCCAAT+TGG - Chr7:28452638-28452657 MsG0780037562.01.T01:CDS 25.0%
AGAAGATGACATAGAAAGTT+GGG - Chr7:28452960-28452979 MsG0780037562.01.T01:CDS 30.0%
GTATGAAACTTACTATGGAA+TGG - Chr7:28452495-28452514 MsG0780037562.01.T01:intron 30.0%
GTTACCAAATGTTACCAAAT+GGG - Chr7:28452096-28452115 MsG0780037562.01.T01:CDS 30.0%
GTTCAGTATGAAACTTACTA+TGG - Chr7:28452490-28452509 MsG0780037562.01.T01:intron 30.0%
TATGCAGAACAATAAACTGT+TGG + Chr7:28452583-28452602 None:intergenic 30.0%
TGAAAAGATTACAAGTTCGA+AGG + Chr7:28453023-28453042 None:intergenic 30.0%
TGGGTCAAATTATGAAAAGT+AGG + Chr7:28452636-28452655 None:intergenic 30.0%
TGTTACCAAATGTTACCAAA+TGG - Chr7:28452095-28452114 MsG0780037562.01.T01:CDS 30.0%
TTCTCTGTTAAAGATTGTCA+TGG + Chr7:28453115-28453134 None:intergenic 30.0%
AAATGGATGTCCAATTCTTG+AGG - Chr7:28452336-28452355 MsG0780037562.01.T01:CDS 35.0%
AGTAAGAAGTAAGCACCAAT+TGG + Chr7:28452656-28452675 None:intergenic 35.0%
AGTTGCCAATCTCTCTATTA+TGG - Chr7:28452681-28452700 MsG0780037562.01.T01:intron 35.0%
ATTTATTATCCTCATGCCCA+AGG - Chr7:28453151-28453170 MsG0780037562.01.T01:CDS 35.0%
CTATGTCAACATTGAGATGA+AGG + Chr7:28452153-28452172 None:intergenic 35.0%
GAGAAGATGACATAGAAAGT+TGG - Chr7:28452959-28452978 MsG0780037562.01.T01:CDS 35.0%
GTAAGAAGTAAGCACCAATT+GGG + Chr7:28452655-28452674 None:intergenic 35.0%
TAGCACAAAATTGACCCATT+TGG + Chr7:28452113-28452132 None:intergenic 35.0%
TCATACTGAACTGCTTTCAA+CGG + Chr7:28452481-28452500 None:intergenic 35.0%
TCCAACCATAATAGAGAGAT+TGG + Chr7:28452689-28452708 None:intergenic 35.0%
TTGCAACTGAGAATACTGAT+AGG + Chr7:28452184-28452203 None:intergenic 35.0%
TTTATTATCCTCATGCCCAA+GGG - Chr7:28453152-28453171 MsG0780037562.01.T01:CDS 35.0%
! AAGTTCGAAGGTGTAATGAA+AGG + Chr7:28453011-28453030 None:intergenic 35.0%
! CAAGCTTTTCTATTTCACTG+TGG - Chr7:28452219-28452238 MsG0780037562.01.T01:CDS 35.0%
! GTCAATTTTGTGCTAAAACG+TGG - Chr7:28452118-28452137 MsG0780037562.01.T01:CDS 35.0%
! TGACATTGATCAGGTTTGTT+AGG - Chr7:28452755-28452774 MsG0780037562.01.T01:intron 35.0%
! TTGACCCATTTGGTAACATT+TGG + Chr7:28452103-28452122 None:intergenic 35.0%
!! GACATTGATCAGGTTTGTTA+GGG - Chr7:28452756-28452775 MsG0780037562.01.T01:intron 35.0%
!!! AAATGAAGGGTTTTGAGAGA+AGG + Chr7:28452271-28452290 None:intergenic 35.0%
AGAAAAGCTTGAGAACCACA+GGG + Chr7:28452210-28452229 None:intergenic 40.0%
AGCGCAATCAATATCAACTC+TGG + Chr7:28452446-28452465 None:intergenic 40.0%
CTTAAGTTTACACGTTGCAG+AGG + Chr7:28453178-28453197 None:intergenic 40.0%
GCAAAAGCTTGACATTGATC+AGG - Chr7:28452746-28452765 MsG0780037562.01.T01:intron 40.0%
GCCAATCTCTCTATTATGGT+TGG - Chr7:28452685-28452704 MsG0780037562.01.T01:intron 40.0%
TAGAAAAGCTTGAGAACCAC+AGG + Chr7:28452211-28452230 None:intergenic 40.0%
! ATGTCAAGCTTTTGCAGCTT+AGG + Chr7:28452741-28452760 None:intergenic 40.0%
! TGTCAAGCTTTTGCAGCTTA+GGG + Chr7:28452740-28452759 None:intergenic 40.0%
!! AGGTGTAATGAAAGGCATTG+CGG + Chr7:28453003-28453022 None:intergenic 40.0%
GAAAAGCTTGAGAACCACAG+GGG + Chr7:28452209-28452228 None:intergenic 45.0%
GCATTGCGGAACAGAATTTG+GGG + Chr7:28452989-28453008 None:intergenic 45.0%
GGCATTGCGGAACAGAATTT+GGG + Chr7:28452990-28453009 None:intergenic 45.0%
TTCAACTTCTTAGGCCTACC+AGG - Chr7:28453039-28453058 MsG0780037562.01.T01:CDS 45.0%
TTCTAGGTTCGTGACCCATA+TGG - Chr7:28452603-28452622 MsG0780037562.01.T01:CDS 45.0%
TTGTTTACAGGATGACGCAG+TGG - Chr7:28452921-28452940 MsG0780037562.01.T01:CDS 45.0%
TTTGCAAGCATAACCCTACC+TGG + Chr7:28453060-28453079 None:intergenic 45.0%
! AGGCATTGCGGAACAGAATT+TGG + Chr7:28452991-28453010 None:intergenic 45.0%
! ATGACGCAGTGGAGGTATAT+TGG - Chr7:28452932-28452951 MsG0780037562.01.T01:CDS 45.0%
ACTTCTTAGGCCTACCAGGT+AGG - Chr7:28453043-28453062 MsG0780037562.01.T01:CDS 50.0%
CAAGCATAACCCTACCTGGT+AGG + Chr7:28453056-28453075 None:intergenic 50.0%
CTTCTTAGGCCTACCAGGTA+GGG - Chr7:28453044-28453063 MsG0780037562.01.T01:CDS 50.0%
TCTCAGTTGCAAAACCCCTG+TGG - Chr7:28452192-28452211 MsG0780037562.01.T01:CDS 50.0%
TTTACAGGATGACGCAGTGG+AGG - Chr7:28452924-28452943 MsG0780037562.01.T01:CDS 50.0%
! GTCTGAAACTAGACGAGACG+AGG + Chr7:28452876-28452895 None:intergenic 50.0%
TACACGTTGCAGAGGCCCTT+GGG + Chr7:28453170-28453189 None:intergenic 55.0%
TTACACGTTGCAGAGGCCCT+TGG + Chr7:28453171-28453190 None:intergenic 55.0%
TGCAGAGGCCCTTGGGCATG+AGG + Chr7:28453163-28453182 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 28452094 28453212 28452094 ID=MsG0780037562.01;Name=MsG0780037562.01
Chr7 mRNA 28452094 28453212 28452094 ID=MsG0780037562.01.T01;Parent=MsG0780037562.01;Name=MsG0780037562.01.T01;_AED=0.09;_eAED=0.11;_QI=0|0|0|1|1|1|3|0|278
Chr7 exon 28452817 28453212 28452817 ID=MsG0780037562.01.T01:exon:13246;Parent=MsG0780037562.01.T01
Chr7 exon 28452539 28452697 28452539 ID=MsG0780037562.01.T01:exon:13245;Parent=MsG0780037562.01.T01
Chr7 exon 28452094 28452375 28452094 ID=MsG0780037562.01.T01:exon:13244;Parent=MsG0780037562.01.T01
Chr7 CDS 28452817 28453212 28452817 ID=MsG0780037562.01.T01:cds;Parent=MsG0780037562.01.T01
Chr7 CDS 28452539 28452697 28452539 ID=MsG0780037562.01.T01:cds;Parent=MsG0780037562.01.T01
Chr7 CDS 28452094 28452375 28452094 ID=MsG0780037562.01.T01:cds;Parent=MsG0780037562.01.T01
Gene Sequence

>MsG0780037562.01.T01

ATGTTACCAAATGTTACCAAATGGGTCAATTTTGTGCTAAAACGTGGAGTTGAATACCTTCATCTCAATGTTGACATAGTGACTTTACCTATCAGTATTCTCAGTTGCAAAACCCCTGTGGTTCTCAAGCTTTTCTATTTCACTGTGGAAGAGAGTTTTTCTTCTGTTTTACTTCCTTCTCTCAAAACCCTTCATTTAGAAGATATTTTGTTCCCTACACTTGAAGATTTTATGTTACTTTTAAATGGATGTCCAATTCTTGAGGATTTAATAACATCTTTCGTGTGTTTTCGTTCTTATGAAGATATAACTTTTGATTATCTGGAGAGCTTTTTCTTAAGTAACTTGACCAGAGTTGATATTGATTGCGCTTGCTCTTATTTTCCGTTGAAAGCAGTTCGTGACCCATATGGTTTAATTCCTACTTTTCATAATTTGACCCAATTGGTGCTTACTTCTTACTATCAAAGTTGCCAATCTCTCTATTATGGTTGGAAATTCTTAGTAGAACTTCTCAACAACTGCCCTAAGCTGCAAAAGCTTGACATTGATCAGGATGACGCAGTGGAGGTATATTGGACTAGAGAAGATGACATAGAAAGTTGGGCAGCCCCAAATTCTGTTCCGCAATGCCTTTCATTACACCTTCGAACTTGTAATCTTTTCAACTTCTTAGGCCTACCAGGTAGGGTTATGCTTGCAAAGTATATTTTGAAGAATGCAAGAGTTTTACAAACCATGACAATCTTTAACAGAGAACAGCCTAACATAAAACATTTATTATCCTCATGCCCAAGGGCCTCTGCAACGTGTAAACTTAAGTTTCAATGTAAGTAG
Protein sequence

>MsG0780037562.01.T01

MLPNVTKWVNFVLKRGVEYLHLNVDIVTLPISILSCKTPVVLKLFYFTVEESFSSVLLPSLKTLHLEDILFPTLEDFMLLLNGCPILEDLITSFVCFRSYEDITFDYLESFFLSNLTRVDIDCACSYFPLKAVRDPYGLIPTFHNLTQLVLTSYYQSCQSLYYGWKFLVELLNNCPKLQKLDIDQDDAVEVYWTREDDIESWAAPNSVPQCLSLHLRTCNLFNFLGLPGRVMLAKYILKNARVLQTMTIFNREQPNIKHLLSSCPRASATCKLKFQCK*