Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029279.01.T01 | AES99695.1 | 98.574 | 561 | 8 | 0 | 1 | 561 | 1 | 561 | 0 | 1158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029279.01.T01 | G7K7B5 | 98.574 | 561 | 8 | 0 | 1 | 561 | 1 | 561 | 0.0 | 1158 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004750.01 | MsG0580029279.01 | -0.801733 | 7.834846e-49 | 3.769496e-46 |
| MsG0280011304.01 | MsG0580029279.01 | -0.806786 | 6.944879e-50 | 3.803219e-47 |
| MsG0380011844.01 | MsG0580029279.01 | -0.831695 | 1.442597e-55 | 1.577563e-52 |
| MsG0380012122.01 | MsG0580029279.01 | -0.823717 | 1.192021e-53 | 1.034646e-50 |
| MsG0480022340.01 | MsG0580029279.01 | 0.806967 | 6.360539e-50 | 3.499548e-47 |
| MsG0580025362.01 | MsG0580029279.01 | 0.804565 | 2.032353e-49 | 1.051311e-46 |
| MsG0380015466.01 | MsG0580029279.01 | -0.802236 | 6.173170e-49 | 3.008404e-46 |
| MsG0380016547.01 | MsG0580029279.01 | 0.815307 | 9.886296e-52 | 6.791485e-49 |
| MsG0580029279.01 | MsG0880045124.01 | -0.808563 | 2.913110e-50 | 1.671056e-47 |
| MsG0280007193.01 | MsG0580029279.01 | 0.813204 | 2.881672e-51 | 1.869778e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029279.01.T01 | MTR_5g083740 | 98.574 | 561 | 8 | 0 | 1 | 561 | 1 | 561 | 0.0 | 1158 |
| MsG0580029279.01.T01 | MTR_3g072040 | 63.186 | 565 | 141 | 6 | 1 | 561 | 1 | 502 | 0.0 | 653 |
| MsG0580029279.01.T01 | MTR_3g072070 | 66.667 | 483 | 133 | 5 | 1 | 479 | 1 | 459 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029279.01.T01 | AT3G10980 | 59.298 | 570 | 206 | 10 | 5 | 560 | 6 | 563 | 0.0 | 631 |
| MsG0580029279.01.T01 | AT5G05350 | 56.929 | 534 | 199 | 7 | 30 | 560 | 20 | 525 | 0.0 | 598 |
Find 117 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTCTAGCAGTTTCTTTA+TGG | 0.127897 | 5:-94668697 | MsG0580029279.01.T01:CDS |
| ATCTTATGCGTTGCTGTTTC+AGG | 0.172175 | 5:-94669860 | MsG0580029279.01.T01:CDS |
| CGCATAAGATCCACGCAAAA+AGG | 0.191675 | 5:+94669873 | None:intergenic |
| CTAAGTTTGGCGATATCTTT+TGG | 0.228804 | 5:+94669662 | None:intergenic |
| CTAGGTAAAGATTATGATTC+TGG | 0.262677 | 5:-94669419 | MsG0580029279.01.T01:CDS |
| GCATTCCTTGCCGACTTCTT+TGG | 0.266606 | 5:+94669791 | None:intergenic |
| TTTCGGCAAGCCTGCGGTTT+CGG | 0.267613 | 5:-94668949 | MsG0580029279.01.T01:CDS |
| TTGAAGAAGTTGATCCTATT+AGG | 0.274814 | 5:+94670082 | None:intergenic |
| AATTATACCTCTTTCTCATT+TGG | 0.282202 | 5:+94668991 | None:intergenic |
| AGTGGCAAGACGCTTGAATT+TGG | 0.310045 | 5:+94670042 | None:intergenic |
| CACTTTGGCTATTCTGTTGT+TGG | 0.321220 | 5:-94668920 | MsG0580029279.01.T01:CDS |
| GCAGTACTCCTTTCTAAGTT+TGG | 0.322615 | 5:+94669649 | None:intergenic |
| TTGTGCATTTGGTTGGAATA+TGG | 0.330037 | 5:-94669198 | MsG0580029279.01.T01:CDS |
| CCTACTTATGACTTCTGTTT+CGG | 0.336304 | 5:-94668966 | MsG0580029279.01.T01:CDS |
| GTGGAGGAATACTTGACATT+TGG | 0.338866 | 5:-94669262 | MsG0580029279.01.T01:CDS |
| TCGAGAACTTGAAATATCTA+TGG | 0.347292 | 5:+94670165 | None:intergenic |
| AGGAGAACTTGTCCCAGATT+TGG | 0.348843 | 5:+94668767 | None:intergenic |
| GGTGTGTCATCAACCAAATC+TGG | 0.354088 | 5:-94668780 | MsG0580029279.01.T01:CDS |
| ATTGAGGAATGTAACAATAA+TGG | 0.360036 | 5:-94670211 | MsG0580029279.01.T01:CDS |
| CATTGAGTGCTATTCCTAAT+AGG | 0.364914 | 5:-94670096 | MsG0580029279.01.T01:CDS |
| ACTTCATAACATAATGGTTT+CGG | 0.365084 | 5:-94670257 | None:intergenic |
| ATGGTTTCGGTTGATAATAA+TGG | 0.365993 | 5:-94670244 | MsG0580029279.01.T01:CDS |
| ATCGGTGCACCTGCAATTGC+TGG | 0.371089 | 5:-94669464 | MsG0580029279.01.T01:CDS |
| CACTTTGTGGTCTAAACTTA+GGG | 0.372572 | 5:-94669541 | MsG0580029279.01.T01:CDS |
| GCACTTTGTGGTCTAAACTT+AGG | 0.372663 | 5:-94669542 | MsG0580029279.01.T01:CDS |
| AGGATCAACTTCTTCAAAAT+CGG | 0.383821 | 5:-94670076 | MsG0580029279.01.T01:CDS |
| AAGAAACTGCTAGAACTTAG+AGG | 0.389392 | 5:+94668702 | None:intergenic |
| TTTGCTCAATATGCACTTTG+TGG | 0.392887 | 5:-94669554 | MsG0580029279.01.T01:CDS |
| AGATGACAATAGAATGGATT+AGG | 0.399686 | 5:-94669913 | MsG0580029279.01.T01:CDS |
| CTTTGTATCACCGGCGGAGT+TGG | 0.401446 | 5:+94668594 | None:intergenic |
| TGGAGGAATACTTGACATTT+GGG | 0.407333 | 5:-94669261 | MsG0580029279.01.T01:CDS |
| CTTGACGGTTTGAAAGTAGA+AGG | 0.422675 | 5:+94668726 | None:intergenic |
| TTTATCATCTACAATATGAT+AGG | 0.429440 | 5:+94668863 | None:intergenic |
| GAGCGCCCGGCCATCGGTGT+TGG | 0.439028 | 5:-94669506 | MsG0580029279.01.T01:CDS |
| GCCAAGATGAAAATCCAAAA+GGG | 0.440423 | 5:+94669113 | None:intergenic |
| ATATTGAGGATGACACTGTT+AGG | 0.445757 | 5:-94669082 | MsG0580029279.01.T01:CDS |
| CTTGCTCAAGAAATGCGAAC+GGG | 0.448066 | 5:-94668891 | MsG0580029279.01.T01:CDS |
| GTATATAGACCAGCAATTGC+AGG | 0.456063 | 5:+94669455 | None:intergenic |
| AGGCAATGTCTAGTAGGTGC+TGG | 0.460261 | 5:-94669062 | MsG0580029279.01.T01:CDS |
| ACAAGATGGTAGAATAACTT+TGG | 0.464879 | 5:+94669704 | None:intergenic |
| AGAAAGGAGTACTGCAAGAA+TGG | 0.467535 | 5:-94669641 | MsG0580029279.01.T01:CDS |
| AATATGGAGAGACTTGGCTT+TGG | 0.469184 | 5:-94669182 | MsG0580029279.01.T01:CDS |
| CTTGGCTGCTGTTAATATTG+AGG | 0.476409 | 5:-94669096 | MsG0580029279.01.T01:CDS |
| CTAGAACTTAGAGGACTTGA+CGG | 0.477113 | 5:+94668711 | None:intergenic |
| ATCCTGTTCCTTGTCATGAC+TGG | 0.479597 | 5:-94669833 | MsG0580029279.01.T01:CDS |
| TGTATCACCGGCGGAGTTGG+TGG | 0.481477 | 5:+94668597 | None:intergenic |
| AATCTTTACCTAGAGGACTA+AGG | 0.482009 | 5:+94669429 | None:intergenic |
| TCGCGACGCAGAGGTGAAAT+CGG | 0.484106 | 5:+94668804 | None:intergenic |
| TCATGAATGGAAACACATAA+TGG | 0.490549 | 5:-94669606 | MsG0580029279.01.T01:CDS |
| TACCAGTCATGACAAGGAAC+AGG | 0.492780 | 5:+94669831 | None:intergenic |
| GAACTTATAAGCCTCATGAA+TGG | 0.495861 | 5:-94669619 | MsG0580029279.01.T01:CDS |
| CATATTCCAACACCGATGGC+CGG | 0.496400 | 5:+94669500 | None:intergenic |
| TGAAGAAGATGACAATAGAA+TGG | 0.501131 | 5:-94669919 | MsG0580029279.01.T01:CDS |
| AGATATCGCCAAACTTAGAA+AGG | 0.504835 | 5:-94669657 | MsG0580029279.01.T01:CDS |
| ACGGAAGATAGTGGACCATC+TGG | 0.504935 | 5:+94668663 | None:intergenic |
| GGAGATTCTCTTTGTATCAC+CGG | 0.509159 | 5:+94668585 | None:intergenic |
| GGAGGATCCAAATGAGAAAG+AGG | 0.509367 | 5:-94668998 | MsG0580029279.01.T01:CDS |
| AGTATTCCTCCACTCCACTT+TGG | 0.512153 | 5:+94669272 | None:intergenic |
| ATATTCCAACACCGATGGCC+GGG | 0.512263 | 5:+94669501 | None:intergenic |
| AGCCAAGATGAAAATCCAAA+AGG | 0.513987 | 5:+94669112 | None:intergenic |
| TATACAATCCTTAGTCCTCT+AGG | 0.515282 | 5:-94669437 | MsG0580029279.01.T01:CDS |
| TCTGGGACAAGTTCTCCTCT+TGG | 0.516682 | 5:-94668762 | MsG0580029279.01.T01:CDS |
| GGAATAGCACTCAATGTGCT+CGG | 0.531235 | 5:+94670103 | None:intergenic |
| GGTTGGAATATGGAGAGACT+TGG | 0.540609 | 5:-94669188 | MsG0580029279.01.T01:CDS |
| CGGTTTCGGACTGCACACTT+TGG | 0.541886 | 5:-94668935 | MsG0580029279.01.T01:CDS |
| ATCTTGTACTTCTGTGCCGA+TGG | 0.543050 | 5:-94669688 | MsG0580029279.01.T01:CDS |
| CAAGCGTCTTGCCACTCAGA+TGG | 0.543275 | 5:-94670035 | MsG0580029279.01.T01:CDS |
| TTATGCGTTGCTGTTTCAGG+TGG | 0.547321 | 5:-94669857 | MsG0580029279.01.T01:CDS |
| GGCAATGTCTAGTAGGTGCT+GGG | 0.548348 | 5:-94669061 | MsG0580029279.01.T01:CDS |
| ATAATGGTAGTGGTAATTCT+CGG | 0.552969 | 5:-94669590 | MsG0580029279.01.T01:CDS |
| TAATGGTAAAGATGAAATTG+AGG | 0.553613 | 5:-94670227 | MsG0580029279.01.T01:CDS |
| ATTATGTGTTTCCATTCATG+AGG | 0.556074 | 5:+94669608 | None:intergenic |
| GAATAGCACTCAATGTGCTC+GGG | 0.557900 | 5:+94670104 | None:intergenic |
| CCGAAACAGAAGTCATAAGT+AGG | 0.558846 | 5:+94668966 | None:intergenic |
| TTCAAGTTCTCGAAGAGCAA+TGG | 0.559290 | 5:-94670155 | MsG0580029279.01.T01:CDS |
| AAGGCACAGATTGTGAAGCC+TGG | 0.561142 | 5:+94670011 | None:intergenic |
| AGATCTGAGCGCCCGGCCAT+CGG | 0.567721 | 5:-94669512 | MsG0580029279.01.T01:CDS |
| ATGGAAACACATAATGGTAG+TGG | 0.568927 | 5:-94669600 | MsG0580029279.01.T01:CDS |
| AGAAGTCGGCAAGGAATGCA+TGG | 0.573813 | 5:-94669787 | MsG0580029279.01.T01:CDS |
| CTTCTGTTTCGGCAAGCCTG+CGG | 0.574737 | 5:-94668955 | MsG0580029279.01.T01:CDS |
| GTGTGTCATCAACCAAATCT+GGG | 0.575863 | 5:-94668779 | MsG0580029279.01.T01:CDS |
| ATTTCACCTCTGCGTCGCGA+AGG | 0.576158 | 5:-94668801 | MsG0580029279.01.T01:CDS |
| AAGCTATGTGAACTCGGAGA+AGG | 0.576858 | 5:+94669992 | None:intergenic |
| TTCTGTGATTCCAAAGAAGT+CGG | 0.578176 | 5:-94669801 | MsG0580029279.01.T01:CDS |
| TCTCTTAAGCTATGTGAACT+CGG | 0.578236 | 5:+94669986 | None:intergenic |
| ATGGAATATCATAGTCCAGA+TGG | 0.578861 | 5:-94668678 | MsG0580029279.01.T01:CDS |
| GTATAAAAGATCTGAGCGCC+CGG | 0.584269 | 5:-94669519 | MsG0580029279.01.T01:CDS |
| TGGATCGGACGAAGAATCAC+AGG | 0.586235 | 5:-94669399 | MsG0580029279.01.T01:CDS |
| ACTGTTAGGCAATGTCTAGT+AGG | 0.586758 | 5:-94669068 | MsG0580029279.01.T01:CDS |
| CATACAGAAAAGCATAAAAG+TGG | 0.591275 | 5:+94669139 | None:intergenic |
| TTGCTCAAGAAATGCGAACG+GGG | 0.591460 | 5:-94668890 | MsG0580029279.01.T01:CDS |
| TCTTGCCACTCAGATGGACC+AGG | 0.594178 | 5:-94670029 | MsG0580029279.01.T01:CDS |
| GCAGAGGTGAAATCGGCGGT+TGG | 0.594442 | 5:+94668811 | None:intergenic |
| AATGATTCCACCAACTCCGC+CGG | 0.599929 | 5:-94668604 | MsG0580029279.01.T01:CDS |
| GTGCTCGGGAACTTTCTACC+AGG | 0.603559 | 5:+94670118 | None:intergenic |
| TCTTGCTCAAGAAATGCGAA+CGG | 0.603658 | 5:-94668892 | MsG0580029279.01.T01:CDS |
| TAAAGATTATGATTCTGGAT+CGG | 0.607721 | 5:-94669414 | MsG0580029279.01.T01:CDS |
| CCAAGATGAAAATCCAAAAG+GGG | 0.608853 | 5:+94669114 | None:intergenic |
| TGCTCAAGAAATGCGAACGG+GGG | 0.610733 | 5:-94668889 | MsG0580029279.01.T01:CDS |
| GATTAGGAACCCGATGAACA+TGG | 0.611445 | 5:-94669897 | MsG0580029279.01.T01:CDS |
| TGAGACTGAAATCATTTGAG+AGG | 0.616878 | 5:-94669343 | MsG0580029279.01.T01:CDS |
| CAGTCGAAAATAGACCAAAG+TGG | 0.632679 | 5:-94669286 | MsG0580029279.01.T01:CDS |
| AATAGACCAAAGTGGAGTGG+AGG | 0.635594 | 5:-94669278 | MsG0580029279.01.T01:CDS |
| ATGGTGACAGATGAAAATCC+TGG | 0.643050 | 5:-94670136 | MsG0580029279.01.T01:CDS |
| ATCGGCACAGAAGTACAAGA+TGG | 0.645219 | 5:+94669690 | None:intergenic |
| GACACACCTTCGCGACGCAG+AGG | 0.651096 | 5:+94668795 | None:intergenic |
| TGATTCCAAAGAAGTCGGCA+AGG | 0.653679 | 5:-94669796 | MsG0580029279.01.T01:CDS |
| AGTGTGCAGTCCGAAACCGC+AGG | 0.654614 | 5:+94668939 | None:intergenic |
| TCAACATACCAGTCATGACA+AGG | 0.654796 | 5:+94669825 | None:intergenic |
| GATTCTCTTTGTATCACCGG+CGG | 0.656253 | 5:+94668588 | None:intergenic |
| GAAAATAGACCAAAGTGGAG+TGG | 0.658100 | 5:-94669281 | MsG0580029279.01.T01:CDS |
| TATACATATTCCAACACCGA+TGG | 0.667440 | 5:+94669496 | None:intergenic |
| GGAGACGAGTTGACACCAAG+AGG | 0.669536 | 5:+94668747 | None:intergenic |
| GAATCATAATCTTTACCTAG+AGG | 0.677371 | 5:+94669422 | None:intergenic |
| CAAGATGAAAATCCAAAAGG+GGG | 0.678756 | 5:+94669115 | None:intergenic |
| CGACGCAGAGGTGAAATCGG+CGG | 0.690132 | 5:+94668807 | None:intergenic |
| TGAAGCCTGGTCCATCTGAG+TGG | 0.740360 | 5:+94670024 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATCATCTACAATATGAT+AGG | + | Chr5:94669965-94669984 | None:intergenic | 20.0% |
| ! | AATTATACCTCTTTCTCATT+TGG | + | Chr5:94669837-94669856 | None:intergenic | 25.0% |
| ! | ATTGAGGAATGTAACAATAA+TGG | - | Chr5:94668614-94668633 | MsG0580029279.01.T01:CDS | 25.0% |
| ! | TAAAGATTATGATTCTGGAT+CGG | - | Chr5:94669411-94669430 | MsG0580029279.01.T01:CDS | 25.0% |
| ! | TAATGGTAAAGATGAAATTG+AGG | - | Chr5:94668598-94668617 | MsG0580029279.01.T01:CDS | 25.0% |
| !! | ATATGTATAACTTTTGCGAT+CGG | - | Chr5:94669343-94669362 | MsG0580029279.01.T01:CDS | 25.0% |
| ACAAGATGGTAGAATAACTT+TGG | + | Chr5:94669124-94669143 | None:intergenic | 30.0% | |
| AGGATCAACTTCTTCAAAAT+CGG | - | Chr5:94668749-94668768 | MsG0580029279.01.T01:CDS | 30.0% | |
| ATTATGTGTTTCCATTCATG+AGG | + | Chr5:94669220-94669239 | None:intergenic | 30.0% | |
| CTAGGTAAAGATTATGATTC+TGG | - | Chr5:94669406-94669425 | MsG0580029279.01.T01:CDS | 30.0% | |
| GAATCATAATCTTTACCTAG+AGG | + | Chr5:94669406-94669425 | None:intergenic | 30.0% | |
| TCATGAATGGAAACACATAA+TGG | - | Chr5:94669219-94669238 | MsG0580029279.01.T01:CDS | 30.0% | |
| TCGAGAACTTGAAATATCTA+TGG | + | Chr5:94668663-94668682 | None:intergenic | 30.0% | |
| TGAAGAAGATGACAATAGAA+TGG | - | Chr5:94668906-94668925 | MsG0580029279.01.T01:CDS | 30.0% | |
| ! | AAGTTCTAGCAGTTTCTTTA+TGG | - | Chr5:94670128-94670147 | MsG0580029279.01.T01:CDS | 30.0% |
| ! | AGATGACAATAGAATGGATT+AGG | - | Chr5:94668912-94668931 | MsG0580029279.01.T01:CDS | 30.0% |
| ! | CACTTTTATGCTTTTCTGTA+TGG | - | Chr5:94669687-94669706 | MsG0580029279.01.T01:CDS | 30.0% |
| ! | CATACAGAAAAGCATAAAAG+TGG | + | Chr5:94669689-94669708 | None:intergenic | 30.0% |
| ! | TTCAGAAAGCTCTTCTTTTA+CGG | + | Chr5:94670184-94670203 | None:intergenic | 30.0% |
| ! | TTGAAGAAGTTGATCCTATT+AGG | + | Chr5:94668746-94668765 | None:intergenic | 30.0% |
| !! | ATAATGGTAGTGGTAATTCT+CGG | - | Chr5:94669235-94669254 | MsG0580029279.01.T01:CDS | 30.0% |
| !! | ATGGTTTCGGTTGATAATAA+TGG | - | Chr5:94668581-94668600 | MsG0580029279.01.T01:CDS | 30.0% |
| !! | TTCTGTACTTTTTGTGCATT+TGG | - | Chr5:94669616-94669635 | MsG0580029279.01.T01:CDS | 30.0% |
| !!! | GGGATTGTTCTATGTTTTTT+CGG | - | Chr5:94669784-94669803 | MsG0580029279.01.T01:CDS | 30.0% |
| AAGAAACTGCTAGAACTTAG+AGG | + | Chr5:94670126-94670145 | None:intergenic | 35.0% | |
| AATCTTTACCTAGAGGACTA+AGG | + | Chr5:94669399-94669418 | None:intergenic | 35.0% | |
| AGATATCGCCAAACTTAGAA+AGG | - | Chr5:94669168-94669187 | MsG0580029279.01.T01:CDS | 35.0% | |
| AGCCAAGATGAAAATCCAAA+AGG | + | Chr5:94669716-94669735 | None:intergenic | 35.0% | |
| ATATTGAGGATGACACTGTT+AGG | - | Chr5:94669743-94669762 | MsG0580029279.01.T01:CDS | 35.0% | |
| ATGGAAACACATAATGGTAG+TGG | - | Chr5:94669225-94669244 | MsG0580029279.01.T01:CDS | 35.0% | |
| ATGGAATATCATAGTCCAGA+TGG | - | Chr5:94670147-94670166 | MsG0580029279.01.T01:CDS | 35.0% | |
| CAAGATGAAAATCCAAAAGG+GGG | + | Chr5:94669713-94669732 | None:intergenic | 35.0% | |
| CACTTTGTGGTCTAAACTTA+GGG | - | Chr5:94669284-94669303 | MsG0580029279.01.T01:CDS | 35.0% | |
| CCAAGATGAAAATCCAAAAG+GGG | + | Chr5:94669714-94669733 | None:intergenic | 35.0% | |
| CCTACTTATGACTTCTGTTT+CGG | - | Chr5:94669859-94669878 | MsG0580029279.01.T01:CDS | 35.0% | |
| GAACTTATAAGCCTCATGAA+TGG | - | Chr5:94669206-94669225 | MsG0580029279.01.T01:CDS | 35.0% | |
| GCCAAGATGAAAATCCAAAA+GGG | + | Chr5:94669715-94669734 | None:intergenic | 35.0% | |
| TATACAATCCTTAGTCCTCT+AGG | - | Chr5:94669388-94669407 | MsG0580029279.01.T01:CDS | 35.0% | |
| TATACATATTCCAACACCGA+TGG | + | Chr5:94669332-94669351 | None:intergenic | 35.0% | |
| TCTCTTAAGCTATGTGAACT+CGG | + | Chr5:94668842-94668861 | None:intergenic | 35.0% | |
| TGAGACTGAAATCATTTGAG+AGG | - | Chr5:94669482-94669501 | MsG0580029279.01.T01:CDS | 35.0% | |
| TGGAGGAATACTTGACATTT+GGG | - | Chr5:94669564-94669583 | MsG0580029279.01.T01:CDS | 35.0% | |
| TTCTGTGATTCCAAAGAAGT+CGG | - | Chr5:94669024-94669043 | MsG0580029279.01.T01:CDS | 35.0% | |
| TTGTGCATTTGGTTGGAATA+TGG | - | Chr5:94669627-94669646 | MsG0580029279.01.T01:CDS | 35.0% | |
| TTTGCTCAATATGCACTTTG+TGG | - | Chr5:94669271-94669290 | MsG0580029279.01.T01:CDS | 35.0% | |
| ! | CATTGAGTGCTATTCCTAAT+AGG | - | Chr5:94668729-94668748 | MsG0580029279.01.T01:CDS | 35.0% |
| ! | CGATATCTTTTGGATTCCAT+CGG | + | Chr5:94669156-94669175 | None:intergenic | 35.0% |
| ! | CTAAGTTTGGCGATATCTTT+TGG | + | Chr5:94669166-94669185 | None:intergenic | 35.0% |
| ! | GTTTTCAAAGAAACTCGACT+GGG | - | Chr5:94668877-94668896 | MsG0580029279.01.T01:CDS | 35.0% |
| ! | TCTTCTTTTACGGAAGATAG+TGG | + | Chr5:94670174-94670193 | None:intergenic | 35.0% |
| ! | TGTTTTCAAAGAAACTCGAC+TGG | - | Chr5:94668876-94668895 | MsG0580029279.01.T01:CDS | 35.0% |
| !! | GTACTTTTTGTGCATTTGGT+TGG | - | Chr5:94669620-94669639 | MsG0580029279.01.T01:CDS | 35.0% |
| !!! | TGTTTTTTCGGTATGCTCTA+TGG | - | Chr5:94669796-94669815 | MsG0580029279.01.T01:CDS | 35.0% |
| AATATGGAGAGACTTGGCTT+TGG | - | Chr5:94669643-94669662 | MsG0580029279.01.T01:CDS | 40.0% | |
| ACTGTTAGGCAATGTCTAGT+AGG | - | Chr5:94669757-94669776 | MsG0580029279.01.T01:CDS | 40.0% | |
| ATGGTGACAGATGAAAATCC+TGG | - | Chr5:94668689-94668708 | MsG0580029279.01.T01:CDS | 40.0% | |
| CACTTTGGCTATTCTGTTGT+TGG | - | Chr5:94669905-94669924 | MsG0580029279.01.T01:CDS | 40.0% | |
| CAGTCGAAAATAGACCAAAG+TGG | - | Chr5:94669539-94669558 | MsG0580029279.01.T01:CDS | 40.0% | |
| CCGAAACAGAAGTCATAAGT+AGG | + | Chr5:94669862-94669881 | None:intergenic | 40.0% | |
| CTAGAACTTAGAGGACTTGA+CGG | + | Chr5:94670117-94670136 | None:intergenic | 40.0% | |
| CTTGACGGTTTGAAAGTAGA+AGG | + | Chr5:94670102-94670121 | None:intergenic | 40.0% | |
| CTTGGCTGCTGTTAATATTG+AGG | - | Chr5:94669729-94669748 | MsG0580029279.01.T01:CDS | 40.0% | |
| GAAAATAGACCAAAGTGGAG+TGG | - | Chr5:94669544-94669563 | MsG0580029279.01.T01:CDS | 40.0% | |
| GCACTTTGTGGTCTAAACTT+AGG | - | Chr5:94669283-94669302 | MsG0580029279.01.T01:CDS | 40.0% | |
| GCAGTACTCCTTTCTAAGTT+TGG | + | Chr5:94669179-94669198 | None:intergenic | 40.0% | |
| GCATAAGATCCACGCAAAAA+GGG | + | Chr5:94668954-94668973 | None:intergenic | 40.0% | |
| GGAGATTCTCTTTGTATCAC+CGG | + | Chr5:94670243-94670262 | None:intergenic | 40.0% | |
| GTATATAGACCAGCAATTGC+AGG | + | Chr5:94669373-94669392 | None:intergenic | 40.0% | |
| GTGGAGGAATACTTGACATT+TGG | - | Chr5:94669563-94669582 | MsG0580029279.01.T01:CDS | 40.0% | |
| GTGTGTCATCAACCAAATCT+GGG | - | Chr5:94670046-94670065 | MsG0580029279.01.T01:CDS | 40.0% | |
| TCAACATACCAGTCATGACA+AGG | + | Chr5:94669003-94669022 | None:intergenic | 40.0% | |
| TCTTGCTCAAGAAATGCGAA+CGG | - | Chr5:94669933-94669952 | MsG0580029279.01.T01:CDS | 40.0% | |
| ! | CCCCTTTTGGATTTTCATCT+TGG | - | Chr5:94669711-94669730 | MsG0580029279.01.T01:CDS | 40.0% |
| ! | GTATGCTCTATGGTGGTTTT+TGG | - | Chr5:94669806-94669825 | MsG0580029279.01.T01:CDS | 40.0% |
| ! | TTCAAGTTCTCGAAGAGCAA+TGG | - | Chr5:94668670-94668689 | MsG0580029279.01.T01:CDS | 40.0% |
| !! | AGAAAGGAGTACTGCAAGAA+TGG | - | Chr5:94669184-94669203 | MsG0580029279.01.T01:CDS | 40.0% |
| !! | ATCTTATGCGTTGCTGTTTC+AGG | - | Chr5:94668965-94668984 | MsG0580029279.01.T01:CDS | 40.0% |
| !! | TTTTTCGGTATGCTCTATGG+TGG | - | Chr5:94669799-94669818 | MsG0580029279.01.T01:CDS | 40.0% |
| AAGCTATGTGAACTCGGAGA+AGG | + | Chr5:94668836-94668855 | None:intergenic | 45.0% | |
| AATAGACCAAAGTGGAGTGG+AGG | - | Chr5:94669547-94669566 | MsG0580029279.01.T01:CDS | 45.0% | |
| AGGAGAACTTGTCCCAGATT+TGG | + | Chr5:94670061-94670080 | None:intergenic | 45.0% | |
| AGTATTCCTCCACTCCACTT+TGG | + | Chr5:94669556-94669575 | None:intergenic | 45.0% | |
| AGTGGCAAGACGCTTGAATT+TGG | + | Chr5:94668786-94668805 | None:intergenic | 45.0% | |
| ATCCTGTTCCTTGTCATGAC+TGG | - | Chr5:94668992-94669011 | MsG0580029279.01.T01:CDS | 45.0% | |
| ATCTTGTACTTCTGTGCCGA+TGG | - | Chr5:94669137-94669156 | MsG0580029279.01.T01:CDS | 45.0% | |
| CAAAAAGGGCCATGTTCATC+GGG | + | Chr5:94668940-94668959 | None:intergenic | 45.0% | |
| CGCATAAGATCCACGCAAAA+AGG | + | Chr5:94668955-94668974 | None:intergenic | 45.0% | |
| CTTGCTCAAGAAATGCGAAC+GGG | - | Chr5:94669934-94669953 | MsG0580029279.01.T01:CDS | 45.0% | |
| GAATAGCACTCAATGTGCTC+GGG | + | Chr5:94668724-94668743 | None:intergenic | 45.0% | |
| GATTAGGAACCCGATGAACA+TGG | - | Chr5:94668928-94668947 | MsG0580029279.01.T01:CDS | 45.0% | |
| GATTCTCTTTGTATCACCGG+CGG | + | Chr5:94670240-94670259 | None:intergenic | 45.0% | |
| GCAAAAAGGGCCATGTTCAT+CGG | + | Chr5:94668941-94668960 | None:intergenic | 45.0% | |
| GGAATAGCACTCAATGTGCT+CGG | + | Chr5:94668725-94668744 | None:intergenic | 45.0% | |
| GGAGGATCCAAATGAGAAAG+AGG | - | Chr5:94669827-94669846 | MsG0580029279.01.T01:CDS | 45.0% | |
| GGTGTGTCATCAACCAAATC+TGG | - | Chr5:94670045-94670064 | MsG0580029279.01.T01:CDS | 45.0% | |
| GGTTGGAATATGGAGAGACT+TGG | - | Chr5:94669637-94669656 | MsG0580029279.01.T01:CDS | 45.0% | |
| GTATAAAAGATCTGAGCGCC+CGG | - | Chr5:94669306-94669325 | MsG0580029279.01.T01:CDS | 45.0% | |
| TACCAGTCATGACAAGGAAC+AGG | + | Chr5:94668997-94669016 | None:intergenic | 45.0% | |
| TGATTCCAAAGAAGTCGGCA+AGG | - | Chr5:94669029-94669048 | MsG0580029279.01.T01:CDS | 45.0% | |
| TTGCTCAAGAAATGCGAACG+GGG | - | Chr5:94669935-94669954 | MsG0580029279.01.T01:CDS | 45.0% | |
| ! | ATCGGCACAGAAGTACAAGA+TGG | + | Chr5:94669138-94669157 | None:intergenic | 45.0% |
| ! | TTTTCTGTATGGCCCCCTTT+TGG | - | Chr5:94669698-94669717 | MsG0580029279.01.T01:CDS | 45.0% |
| !! | TGCTCTATGGTGGTTTTTGG+AGG | - | Chr5:94669809-94669828 | MsG0580029279.01.T01:CDS | 45.0% |
| !! | TTATGCGTTGCTGTTTCAGG+TGG | - | Chr5:94668968-94668987 | MsG0580029279.01.T01:CDS | 45.0% |
| AAGGCACAGATTGTGAAGCC+TGG | + | Chr5:94668817-94668836 | None:intergenic | 50.0% | |
| AATGATTCCACCAACTCCGC+CGG | - | Chr5:94670221-94670240 | MsG0580029279.01.T01:CDS | 50.0% | |
| AGAAGTCGGCAAGGAATGCA+TGG | - | Chr5:94669038-94669057 | MsG0580029279.01.T01:CDS | 50.0% | |
| AGGCAATGTCTAGTAGGTGC+TGG | - | Chr5:94669763-94669782 | MsG0580029279.01.T01:CDS | 50.0% | |
| ATATTCCAACACCGATGGCC+GGG | + | Chr5:94669327-94669346 | None:intergenic | 50.0% | |
| CATATTCCAACACCGATGGC+CGG | + | Chr5:94669328-94669347 | None:intergenic | 50.0% | |
| GGCAATGTCTAGTAGGTGCT+GGG | - | Chr5:94669764-94669783 | MsG0580029279.01.T01:CDS | 50.0% | |
| TGCTCAAGAAATGCGAACGG+GGG | - | Chr5:94669936-94669955 | MsG0580029279.01.T01:CDS | 50.0% | |
| TGGATCGGACGAAGAATCAC+AGG | - | Chr5:94669426-94669445 | MsG0580029279.01.T01:CDS | 50.0% | |
| ! | TCTGGGACAAGTTCTCCTCT+TGG | - | Chr5:94670063-94670082 | MsG0580029279.01.T01:CDS | 50.0% |
| ! | TGAACATGGCCCTTTTTGCG+TGG | - | Chr5:94668942-94668961 | MsG0580029279.01.T01:CDS | 50.0% |
| !! | ACGGAAGATAGTGGACCATC+TGG | + | Chr5:94670165-94670184 | None:intergenic | 50.0% |
| !! | GCATTCCTTGCCGACTTCTT+TGG | + | Chr5:94669037-94669056 | None:intergenic | 50.0% |
| ATCGGTGCACCTGCAATTGC+TGG | - | Chr5:94669361-94669380 | MsG0580029279.01.T01:CDS | 55.0% | |
| ATTTCACCTCTGCGTCGCGA+AGG | - | Chr5:94670024-94670043 | MsG0580029279.01.T01:CDS | 55.0% | |
| CAAGCGTCTTGCCACTCAGA+TGG | - | Chr5:94668790-94668809 | MsG0580029279.01.T01:CDS | 55.0% | |
| CGGTTTCGGACTGCACACTT+TGG | - | Chr5:94669890-94669909 | MsG0580029279.01.T01:CDS | 55.0% | |
| CTTCTGTTTCGGCAAGCCTG+CGG | - | Chr5:94669870-94669889 | MsG0580029279.01.T01:CDS | 55.0% | |
| CTTTGTATCACCGGCGGAGT+TGG | + | Chr5:94670234-94670253 | None:intergenic | 55.0% | |
| GTGCTCGGGAACTTTCTACC+AGG | + | Chr5:94668710-94668729 | None:intergenic | 55.0% | |
| TCGCGACGCAGAGGTGAAAT+CGG | + | Chr5:94670024-94670043 | None:intergenic | 55.0% | |
| TCTTGCCACTCAGATGGACC+AGG | - | Chr5:94668796-94668815 | MsG0580029279.01.T01:CDS | 55.0% | |
| TGAAGCCTGGTCCATCTGAG+TGG | + | Chr5:94668804-94668823 | None:intergenic | 55.0% | |
| TTTCGGCAAGCCTGCGGTTT+CGG | - | Chr5:94669876-94669895 | MsG0580029279.01.T01:CDS | 55.0% | |
| ! | GGAGACGAGTTGACACCAAG+AGG | + | Chr5:94670081-94670100 | None:intergenic | 55.0% |
| AGTGTGCAGTCCGAAACCGC+AGG | + | Chr5:94669889-94669908 | None:intergenic | 60.0% | |
| CGACGCAGAGGTGAAATCGG+CGG | + | Chr5:94670021-94670040 | None:intergenic | 60.0% | |
| GCAGAGGTGAAATCGGCGGT+TGG | + | Chr5:94670017-94670036 | None:intergenic | 60.0% | |
| TGTATCACCGGCGGAGTTGG+TGG | + | Chr5:94670231-94670250 | None:intergenic | 60.0% | |
| AGATCTGAGCGCCCGGCCAT+CGG | - | Chr5:94669313-94669332 | MsG0580029279.01.T01:CDS | 65.0% | |
| GACACACCTTCGCGACGCAG+AGG | + | Chr5:94670033-94670052 | None:intergenic | 65.0% | |
| GAGCGCCCGGCCATCGGTGT+TGG | - | Chr5:94669319-94669338 | MsG0580029279.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 94668581 | 94670266 | 94668581 | ID=MsG0580029279.01;Name=MsG0580029279.01 |
| Chr5 | mRNA | 94668581 | 94670266 | 94668581 | ID=MsG0580029279.01.T01;Parent=MsG0580029279.01;Name=MsG0580029279.01.T01;_AED=0.40;_eAED=0.40;_QI=0|-1|0|1|-1|1|1|0|561 |
| Chr5 | exon | 94668581 | 94670266 | 94668581 | ID=MsG0580029279.01.T01:exon:49932;Parent=MsG0580029279.01.T01 |
| Chr5 | CDS | 94668581 | 94670266 | 94668581 | ID=MsG0580029279.01.T01:cds;Parent=MsG0580029279.01.T01 |
| Gene Sequence |
| Protein sequence |
