AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011844.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011844.01.T01 MTR_1g037680 78.358 134 29 0 2 135 53 186 6.92e-74 218
MsG0380011844.01.T01 MTR_3g014240 81.818 88 16 0 21 108 67 154 3.88e-46 147
MsG0380011844.01.T01 MTR_3g089065 30.337 89 60 1 47 135 87 173 1.48e-12 61.6
MsG0380011844.01.T01 MTR_1g114290 36.145 83 51 1 40 122 82 162 1.67e-12 61.6
MsG0380011844.01.T01 MTR_5g021180 40.678 59 34 1 49 107 33 90 3.40e-11 57.0
MsG0380011844.01.T01 MTR_2g079420 27.434 113 73 2 28 133 61 171 3.79e-11 57.8
MsG0380011844.01.T01 MTR_1g098660 33.766 77 50 1 28 104 61 136 8.74e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011844.01.T01 AT3G06730 91.509 106 9 0 30 135 78 183 2.20e-70 209
MsG0380011844.01.T01 AT1G50320 34.118 85 56 0 48 132 89 173 5.86e-12 60.5

Find 42 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATAATTGTAGCCTATTT+TGG 0.101435 3:-6270524 MsG0380011844.01.T01:three_prime_UTR
CTAACCAATTCATATGAATT+TGG 0.168019 3:-6270486 MsG0380011844.01.T01:three_prime_UTR
CTTCAATTCTGTCCCAAAAT+AGG 0.291332 3:+6270511 None:intergenic
AAAGCCAAATTCATATGAAT+TGG 0.338463 3:+6270482 None:intergenic
GTGTGGTCCATGCATCTTAA+TGG 0.366660 3:-6274288 MsG0380011844.01.T01:CDS
GAAGAATGAGGAGGAGGAGG+AGG 0.371035 3:-6276075 MsG0380011844.01.T01:CDS
AAAGAAATGTAAAACAGTTA+AGG 0.375104 3:-6270599 MsG0380011844.01.T01:exon
AGATCCTACAAGATATTGTT+TGG 0.381266 3:-6270545 MsG0380011844.01.T01:three_prime_UTR
GATCAGGACTAATAAAGAAT+AGG 0.400554 3:+6270687 None:intergenic
TATACCAAACAATATCTTGT+AGG 0.419629 3:+6270541 None:intergenic
GATTAATTATGTAATGTTTG+AGG 0.426456 3:-6270441 MsG0380011844.01.T01:three_prime_UTR
AGACATAGAGGAGGAGGAGG+AGG 0.426502 3:-6276126 MsG0380011844.01.T01:CDS
GAAGAAGAATGAGGAGGAGG+AGG 0.427497 3:-6276078 MsG0380011844.01.T01:CDS
AATGGCTCAAGAACTTGAAA+TGG 0.441341 3:-6274270 MsG0380011844.01.T01:intron
ATCAGGACTAATAAAGAATA+GGG 0.446630 3:+6270688 None:intergenic
AAGAAATGTAAAACAGTTAA+GGG 0.448450 3:-6270598 MsG0380011844.01.T01:exon
ATATCTCTCATCATCTGTAT+TGG 0.448708 3:+6270629 None:intergenic
GGAGAAGAAGAATGAGGAGG+AGG 0.451682 3:-6276081 MsG0380011844.01.T01:CDS
CTCTATGTCTACAATGAACA+TGG 0.457945 3:+6276139 None:intergenic
CTAGAAATTCCAACTATGTC+AGG 0.465876 3:+6270566 None:intergenic
TTGAGGTCGACATATGTTGT+AGG 0.467759 3:-6270424 MsG0380011844.01.T01:three_prime_UTR
CATTGTAGACATAGAGGAGG+AGG 0.472616 3:-6276132 MsG0380011844.01.T01:CDS
AAAGATGCTATTAGAACTGA+AGG 0.473614 3:-6270659 MsG0380011844.01.T01:CDS
GCGTAGAAATCAATAATAAG+AGG 0.481926 3:+6274317 None:intergenic
TGTAGACATAGAGGAGGAGG+AGG 0.512603 3:-6276129 MsG0380011844.01.T01:CDS
TACTCATCACCTGACATAGT+TGG 0.517973 3:-6270575 MsG0380011844.01.T01:three_prime_UTR
TCTTGAGCCATTAAGATGCA+TGG 0.532979 3:+6274281 None:intergenic
GGAGGAGGAGAAGAAGAATG+AGG 0.534178 3:-6276087 MsG0380011844.01.T01:CDS
TGAGGTCGACATATGTTGTA+GGG 0.538411 3:-6270423 MsG0380011844.01.T01:three_prime_UTR
TTTGATGTATTTCAGGTGAG+AGG 0.539202 3:-6270719 MsG0380011844.01.T01:intron
TGAATTTGCACGCGACATGC+AGG 0.541865 3:-6271587 MsG0380011844.01.T01:intron
GGACTAATAAAGAATAGGGT+AGG 0.548631 3:+6270692 None:intergenic
TTGATGTATTTCAGGTGAGA+GGG 0.550346 3:-6270718 MsG0380011844.01.T01:intron
GATTTCTACGCGACATGGTG+TGG 0.564485 3:-6274305 MsG0380011844.01.T01:CDS
TTATTGATTTCTACGCGACA+TGG 0.587417 3:-6274310 MsG0380011844.01.T01:CDS
GGAGGAGAAGAAGAATGAGG+AGG 0.588392 3:-6276084 MsG0380011844.01.T01:CDS
GAAATTCAAGAGCTTGTGAA+GGG 0.595327 3:-6274353 MsG0380011844.01.T01:CDS
AGAAATTCAAGAGCTTGTGA+AGG 0.600875 3:-6274354 MsG0380011844.01.T01:CDS
CATGTTCATTGTAGACATAG+AGG 0.631916 3:-6276138 MsG0380011844.01.T01:CDS
GTTCATTGTAGACATAGAGG+AGG 0.676986 3:-6276135 MsG0380011844.01.T01:CDS
AAGATGCTATTAGAACTGAA+GGG 0.684088 3:-6270658 MsG0380011844.01.T01:CDS
TCTATGTCTACAATGAACAT+GGG 0.684742 3:+6276140 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTCATCAAAAATATAAA+GGG + Chr3:6274182-6274201 None:intergenic 10.0%
!! ACTAAAATTAAAATTAAGTA+AGG + Chr3:6271215-6271234 None:intergenic 10.0%
!! TTGGATAAATAATTAATTAA+GGG - Chr3:6272486-6272505 MsG0380011844.01.T01:intron 10.0%
!! TTTGGATAAATAATTAATTA+AGG - Chr3:6272485-6272504 MsG0380011844.01.T01:intron 10.0%
!!! GTTTTTTTAATACTAAATTT+GGG - Chr3:6272000-6272019 MsG0380011844.01.T01:intron 10.0%
!!! TGTTTTTTTAATACTAAATT+TGG - Chr3:6271999-6272018 MsG0380011844.01.T01:intron 10.0%
!! AAAATAAGAGTTATTATTGT+TGG - Chr3:6275062-6275081 MsG0380011844.01.T01:intron 15.0%
!! AATAACTATTATACAAGTTA+TGG + Chr3:6274491-6274510 None:intergenic 15.0%
!! ACAATTATTGTAATGATAAT+TGG - Chr3:6272767-6272786 MsG0380011844.01.T01:intron 15.0%
!! CAAATTCATCAAAAATATAA+AGG + Chr3:6274183-6274202 None:intergenic 15.0%
!! TAAAACTCCTTAAAATATTT+AGG - Chr3:6272457-6272476 MsG0380011844.01.T01:intron 15.0%
!! TATTAAAAAAACAAAGCAAT+TGG + Chr3:6271992-6272011 None:intergenic 15.0%
!! TGTGCAAAAAAAATATTATA+AGG + Chr3:6271238-6271257 None:intergenic 15.0%
!! TTGTATTCTAAACTATATTT+AGG - Chr3:6273009-6273028 MsG0380011844.01.T01:intron 15.0%
!!! AAACTAATTTTGTTTTATCA+AGG + Chr3:6271272-6271291 None:intergenic 15.0%
!!! AAATGTATTTCTTTTAATGA+TGG + Chr3:6274542-6274561 None:intergenic 15.0%
!!! GTTATTAGTTTTATAGATTT+TGG - Chr3:6272395-6272414 MsG0380011844.01.T01:intron 15.0%
!!! TTCTATCATAAATCATATTT+TGG + Chr3:6272939-6272958 None:intergenic 15.0%
!! AAAGAAATGTAAAACAGTTA+AGG - Chr3:6275880-6275899 MsG0380011844.01.T01:intron 20.0%
!! AAGAAATGTAAAACAGTTAA+GGG - Chr3:6275881-6275900 MsG0380011844.01.T01:intron 20.0%
!! ACTACTTGACATAATTTAAT+TGG - Chr3:6271117-6271136 MsG0380011844.01.T01:intron 20.0%
!! AGATTCATGAAAAGTAAAAT+AGG - Chr3:6274312-6274331 MsG0380011844.01.T01:CDS 20.0%
!! ATAAAATATGTAAAGCTTGT+TGG + Chr3:6274675-6274694 None:intergenic 20.0%
!! ATAGTTGGATGTTATAATTA+GGG + Chr3:6271545-6271564 None:intergenic 20.0%
!! ATTTATGATAGAACATTATG+GGG - Chr3:6272946-6272965 MsG0380011844.01.T01:intron 20.0%
!! CATTATAATGTCACATTTAT+AGG - Chr3:6271070-6271089 MsG0380011844.01.T01:intron 20.0%
!! GATTAATTATGTAATGTTTG+AGG - Chr3:6276038-6276057 MsG0380011844.01.T01:intron 20.0%
!! GATTTATGATAGAACATTAT+GGG - Chr3:6272945-6272964 MsG0380011844.01.T01:intron 20.0%
!! TGATTTATGATAGAACATTA+TGG - Chr3:6272944-6272963 MsG0380011844.01.T01:intron 20.0%
!!! AACAAGTCCTAAATATTTTA+AGG + Chr3:6272467-6272486 None:intergenic 20.0%
!!! AACTGTAAAATAAAAAGTGT+AGG - Chr3:6274286-6274305 MsG0380011844.01.T01:CDS 20.0%
!!! ACTGTAAAATAAAAAGTGTA+GGG - Chr3:6274287-6274306 MsG0380011844.01.T01:CDS 20.0%
!!! ACTTTTTATTTTACAGTTTC+TGG + Chr3:6274284-6274303 None:intergenic 20.0%
!!! ATAATATTTTTTTTGCACAC+AGG - Chr3:6271239-6271258 MsG0380011844.01.T01:intron 20.0%
!!! ATGATGCTTTTTATTAATAG+GGG - Chr3:6273104-6273123 MsG0380011844.01.T01:intron 20.0%
!!! ATTGCTTGTTATTTAATTTC+AGG + Chr3:6270920-6270939 None:intergenic 20.0%
!!! CATGATGCTTTTTATTAATA+GGG - Chr3:6273103-6273122 MsG0380011844.01.T01:intron 20.0%
!!! TAAAATATTTAGGACTTGTT+TGG - Chr3:6272467-6272486 MsG0380011844.01.T01:intron 20.0%
!!! TAATATTTTTTTTGCACACA+GGG - Chr3:6271240-6271259 MsG0380011844.01.T01:intron 20.0%
!!! TCATGATGCTTTTTATTAAT+AGG - Chr3:6273102-6273121 MsG0380011844.01.T01:intron 20.0%
!!! TGTTTTTTCATATGATATCT+TGG - Chr3:6272545-6272564 MsG0380011844.01.T01:intron 20.0%
!!! TTTTTTCCTCTAATCTTTTT+AGG + Chr3:6274951-6274970 None:intergenic 20.0%
! AAAAGATGATTTGATATGTC+TGG - Chr3:6270498-6270517 MsG0380011844.01.T01:three_prime_UTR 25.0%
! AAAATTAAACTCTGCTAGTT+TGG + Chr3:6272708-6272727 None:intergenic 25.0%
! AAAATTACTTGACTGTAAAC+TGG + Chr3:6274436-6274455 None:intergenic 25.0%
! AAACTAATAACGAACTAAAG+CGG + Chr3:6272386-6272405 None:intergenic 25.0%
! AAAGCCAAATTCATATGAAT+TGG + Chr3:6276000-6276019 None:intergenic 25.0%
! AAGAATGATAATCTCAGTAA+AGG + Chr3:6272336-6272355 None:intergenic 25.0%
! AATAATAGTTCACCAGAAAA+TGG - Chr3:6272433-6272452 MsG0380011844.01.T01:intron 25.0%
! AATACTACATTCCATATAAC+AGG + Chr3:6273705-6273724 None:intergenic 25.0%
! AATGAAAATGAGTATACAAG+TGG + Chr3:6273268-6273287 None:intergenic 25.0%
! ACGTATAAGCATGATTTAAA+TGG + Chr3:6275691-6275710 None:intergenic 25.0%
! ACGTTTATTACACACATAAT+TGG - Chr3:6275707-6275726 MsG0380011844.01.T01:intron 25.0%
! AGGAAAAAAGAAACATATCA+TGG - Chr3:6274962-6274981 MsG0380011844.01.T01:intron 25.0%
! ATATATGAAAGATTGAGTCT+TGG + Chr3:6270892-6270911 None:intergenic 25.0%
! ATCAGGACTAATAAAGAATA+GGG + Chr3:6275794-6275813 None:intergenic 25.0%
! ATGAAAATGAGTATACAAGT+GGG + Chr3:6273267-6273286 None:intergenic 25.0%
! ATTCTACTGATGTATTTCTT+GGG + Chr3:6270560-6270579 None:intergenic 25.0%
! CATAGTTGGATGTTATAATT+AGG + Chr3:6271546-6271565 None:intergenic 25.0%
! CTAACCAATTCATATGAATT+TGG - Chr3:6275993-6276012 MsG0380011844.01.T01:intron 25.0%
! GAATTGTTAAAATAGATGTC+AGG - Chr3:6273866-6273885 MsG0380011844.01.T01:intron 25.0%
! GATTATCCTAAAAAGATTAG+AGG - Chr3:6274942-6274961 MsG0380011844.01.T01:intron 25.0%
! TATACCAAACAATATCTTGT+AGG + Chr3:6275941-6275960 None:intergenic 25.0%
! TGAAACATTTGATGTATTTC+AGG - Chr3:6275753-6275772 MsG0380011844.01.T01:intron 25.0%
!! ACTTTTAGCGATTAAAAGAT+TGG - Chr3:6271403-6271422 MsG0380011844.01.T01:intron 25.0%
!! ATCAAATCATCTTTTGTTCT+TGG + Chr3:6270493-6270512 None:intergenic 25.0%
!! GATTTTGTAAGGTTAAGTTA+GGG - Chr3:6275446-6275465 MsG0380011844.01.T01:intron 25.0%
!! GTATAATTGTAGCCTATTTT+GGG - Chr3:6275956-6275975 MsG0380011844.01.T01:intron 25.0%
!! TACTCTTTATTTACCAACAT+TGG + Chr3:6274769-6274788 None:intergenic 25.0%
!! TCTTTAACATGTTTTCCTTT+AGG + Chr3:6271945-6271964 None:intergenic 25.0%
!! TCTTTTAATCGCTAAAAGTA+TGG + Chr3:6271402-6271421 None:intergenic 25.0%
!! TGATTTTGTAAGGTTAAGTT+AGG - Chr3:6275445-6275464 MsG0380011844.01.T01:intron 25.0%
!! TTTTTGTATTTTCTTGCTAG+TGG - Chr3:6271483-6271502 MsG0380011844.01.T01:intron 25.0%
!!! AAACATAGTTTTAGTGTTCA+TGG + Chr3:6274026-6274045 None:intergenic 25.0%
!!! CTGTAATTAGTGTTTTTAAG+TGG + Chr3:6271010-6271029 None:intergenic 25.0%
!!! CTTTTAATCGCTAAAAGTAT+GGG + Chr3:6271401-6271420 None:intergenic 25.0%
!!! GTTCTAATAGCATCTTTTTT+TGG + Chr3:6275817-6275836 None:intergenic 25.0%
!!! TAGATTTTGGATTCTGAAAT+TGG - Chr3:6272408-6272427 MsG0380011844.01.T01:intron 25.0%
!!! TCAAGAAAAGTATTCAACAA+AGG + Chr3:6274516-6274535 None:intergenic 25.0%
!!! TCTAGTGTTATTTAGAATGA+AGG + Chr3:6274390-6274409 None:intergenic 25.0%
!!! TCTTACAAGTTGATTTTGTA+AGG - Chr3:6275435-6275454 MsG0380011844.01.T01:intron 25.0%
!!! TGATGCTTTTTATTAATAGG+GGG - Chr3:6273105-6273124 MsG0380011844.01.T01:intron 25.0%
!!! TGTTGATTTCTTAGTTTTTG+AGG - Chr3:6274694-6274713 MsG0380011844.01.T01:intron 25.0%
!!! TTTTAATCGCTAAAAGTATG+GGG + Chr3:6271400-6271419 None:intergenic 25.0%
AAAGATGCTATTAGAACTGA+AGG - Chr3:6275820-6275839 MsG0380011844.01.T01:intron 30.0%
AAGATGCTATTAGAACTGAA+GGG - Chr3:6275821-6275840 MsG0380011844.01.T01:intron 30.0%
AAGCACTTGTGTGAATATTT+AGG + Chr3:6272635-6272654 None:intergenic 30.0%
AAGCTGCACAAATTTATTGA+AGG + Chr3:6274816-6274835 None:intergenic 30.0%
AATCGTGAATTTGAGTAAAC+TGG - Chr3:6274343-6274362 MsG0380011844.01.T01:CDS 30.0%
ACTTGTGTGAATATTTAGGA+GGG + Chr3:6272631-6272650 None:intergenic 30.0%
AGATCCTACAAGATATTGTT+TGG - Chr3:6275934-6275953 MsG0380011844.01.T01:intron 30.0%
AGATCTTGTGCAAAAATATC+AGG + Chr3:6270826-6270845 None:intergenic 30.0%
AGGTCAGAAATCAACTAAAA+AGG - Chr3:6270607-6270626 MsG0380011844.01.T01:exon 30.0%
ATAGAACATTATGGGGTAAT+TGG - Chr3:6272953-6272972 MsG0380011844.01.T01:intron 30.0%
ATATCTCTCATCATCTGTAT+TGG + Chr3:6275853-6275872 None:intergenic 30.0%
ATCGTGAATTTGAGTAAACT+GGG - Chr3:6274344-6274363 MsG0380011844.01.T01:CDS 30.0%
ATTTGATGAACTGAACTCAA+GGG - Chr3:6274558-6274577 MsG0380011844.01.T01:intron 30.0%
CAACAAAACAAGCTTAATTC+TGG - Chr3:6273909-6273928 MsG0380011844.01.T01:intron 30.0%
CATGATGATTATCAATGAGT+TGG - Chr3:6272912-6272931 MsG0380011844.01.T01:intron 30.0%
CATTCTACTGATGTATTTCT+TGG + Chr3:6270561-6270580 None:intergenic 30.0%
CTAAAATCTTCCATCTTCAA+TGG - Chr3:6271746-6271765 MsG0380011844.01.T01:intron 30.0%
GATCAGGACTAATAAAGAAT+AGG + Chr3:6275795-6275814 None:intergenic 30.0%
GCGTAGAAATCAATAATAAG+AGG + Chr3:6272165-6272184 None:intergenic 30.0%
GTTGACTACAAAAAACAAAG+TGG + Chr3:6273785-6273804 None:intergenic 30.0%
TAAAATAGATGTCAGGATTC+TGG - Chr3:6273873-6273892 MsG0380011844.01.T01:intron 30.0%
TAAGATGAGAACCACAATAA+AGG + Chr3:6275420-6275439 None:intergenic 30.0%
TCAATGCATTTATCCAAGAT+TGG + Chr3:6273569-6273588 None:intergenic 30.0%
TCATGAAAGTAACGTGTATT+AGG + Chr3:6274208-6274227 None:intergenic 30.0%
TGAAGTAACATAATAGATCC+AGG - Chr3:6273976-6273995 MsG0380011844.01.T01:intron 30.0%
TGTCAACTGAATTTACTTCT+AGG + Chr3:6272731-6272750 None:intergenic 30.0%
TGTTAAAGAAGACTATCTTG+TGG - Chr3:6271956-6271975 MsG0380011844.01.T01:intron 30.0%
TTAGATTTCACTTCAGTTTG+TGG + Chr3:6271577-6271596 None:intergenic 30.0%
TTCTACTGATGTATTTCTTG+GGG + Chr3:6270559-6270578 None:intergenic 30.0%
TTGTTACAAAAGCAGCAAAA+GGG - Chr3:6270682-6270701 MsG0380011844.01.T01:CDS 30.0%
TTTGAAGAGAAGGTTGAAAA+GGG + Chr3:6271822-6271841 None:intergenic 30.0%
! ACACGTTACTTTCATGAATT+TGG - Chr3:6274211-6274230 MsG0380011844.01.T01:intron 30.0%
! AGTCATTGTAGTCTTTGAAA+TGG + Chr3:6271437-6271456 None:intergenic 30.0%
! ATGGCATGGTTATTAATTTG+AGG - Chr3:6274734-6274753 MsG0380011844.01.T01:intron 30.0%
! GAAAGTAATTGATAGTTCTG+AGG + Chr3:6274637-6274656 None:intergenic 30.0%
! GATACTCAATTGAGGATTTT+TGG + Chr3:6274262-6274281 None:intergenic 30.0%
! GCACAAGATCTTCATATTTT+TGG - Chr3:6270835-6270854 MsG0380011844.01.T01:intron 30.0%
! GGATAGCATATTTCTATTGA+TGG - Chr3:6274715-6274734 MsG0380011844.01.T01:intron 30.0%
! GGTATAATTGTAGCCTATTT+TGG - Chr3:6275955-6275974 MsG0380011844.01.T01:intron 30.0%
! TGAAGGCTTAAATACAGTTT+TGG + Chr3:6274373-6274392 None:intergenic 30.0%
! TGGATCTATTATGTTACTTC+AGG + Chr3:6273977-6273996 None:intergenic 30.0%
! TGGCATGGTTATTAATTTGA+GGG - Chr3:6274735-6274754 MsG0380011844.01.T01:intron 30.0%
! TGTAGTTTTCTATTATGCAC+TGG + Chr3:6273758-6273777 None:intergenic 30.0%
! TTAACATGTTTTCCTTTAGG+TGG + Chr3:6271942-6271961 None:intergenic 30.0%
!! AAGGAGTTTTATCCATTTTC+TGG + Chr3:6272448-6272467 None:intergenic 30.0%
!! CTCTACAAAACTGACTTTTA+AGG - Chr3:6273438-6273457 MsG0380011844.01.T01:intron 30.0%
!! TTATCTGTGTACTTTAGAGT+CGG - Chr3:6273829-6273848 MsG0380011844.01.T01:intron 30.0%
!! TTTCTATTATGCACTGGTTA+AGG + Chr3:6273752-6273771 None:intergenic 30.0%
!! TTTTGAAGAGAAGGTTGAAA+AGG + Chr3:6271823-6271842 None:intergenic 30.0%
!!! AAAACTGACTTTTAAGGTGA+CGG - Chr3:6273444-6273463 MsG0380011844.01.T01:intron 30.0%
!!! AAAGAGGGTTTTGAATTGAA+GGG + Chr3:6271691-6271710 None:intergenic 30.0%
!!! ATAGCATCTTTTTTTGGATC+AGG + Chr3:6275811-6275830 None:intergenic 30.0%
AAAATGAGTATACAAGTGGG+AGG + Chr3:6273264-6273283 None:intergenic 35.0%
AAACACACAGTAACTGTAAC+TGG - Chr3:6271596-6271615 MsG0380011844.01.T01:CDS 35.0%
AACAAAGATGAAGCCAATCT+TGG - Chr3:6273553-6273572 MsG0380011844.01.T01:intron 35.0%
AACTCACAACCATAACAACT+AGG + Chr3:6274084-6274103 None:intergenic 35.0%
AATGGCTCAAGAACTTGAAA+TGG - Chr3:6272209-6272228 MsG0380011844.01.T01:intron 35.0%
ACCATAACAACTAGGACTAA+TGG + Chr3:6274076-6274095 None:intergenic 35.0%
AGAAATTCAAGAGCTTGTGA+AGG - Chr3:6272125-6272144 MsG0380011844.01.T01:intron 35.0%
AGATGATTTGATATGTCTGG+TGG - Chr3:6270501-6270520 MsG0380011844.01.T01:three_prime_UTR 35.0%
ATACTCAACTTAGTGGGAAA+AGG - Chr3:6273588-6273607 MsG0380011844.01.T01:intron 35.0%
ATCTGTTAAGAGTCTCACAT+TGG + Chr3:6273506-6273525 None:intergenic 35.0%
ATGATATCTTGGAGAGCTTA+TGG - Chr3:6272556-6272575 MsG0380011844.01.T01:intron 35.0%
ATTGTTGAAGTCAGTGGATA+TGG + Chr3:6271901-6271920 None:intergenic 35.0%
CAAGAACTTGAAATGGTATG+AGG - Chr3:6272216-6272235 MsG0380011844.01.T01:intron 35.0%
CACTTGTGTGAATATTTAGG+AGG + Chr3:6272632-6272651 None:intergenic 35.0%
CATTTGATGAACTGAACTCA+AGG - Chr3:6274557-6274576 MsG0380011844.01.T01:intron 35.0%
CTAGAAATTCCAACTATGTC+AGG + Chr3:6275916-6275935 None:intergenic 35.0%
CTGGAACTTGTGAAAAATTC+TGG - Chr3:6273928-6273947 MsG0380011844.01.T01:intron 35.0%
CTTCAATTCTGTCCCAAAAT+AGG + Chr3:6275971-6275990 None:intergenic 35.0%
CTTGTTACAAAAGCAGCAAA+AGG - Chr3:6270681-6270700 MsG0380011844.01.T01:CDS 35.0%
CTTTCTATTGTTGAAGTCAG+TGG + Chr3:6271907-6271926 None:intergenic 35.0%
GAAATTCAAGAGCTTGTGAA+GGG - Chr3:6272126-6272145 MsG0380011844.01.T01:intron 35.0%
GAACGAATATTCAATATGCC+TGG + Chr3:6273997-6274016 None:intergenic 35.0%
GACTCACATTCATGATAAGT+GGG - Chr3:6273650-6273669 MsG0380011844.01.T01:intron 35.0%
GGACTAATAAAGAATAGGGT+AGG + Chr3:6275790-6275809 None:intergenic 35.0%
GTAGAGGTAAACCTGTTATA+TGG - Chr3:6273691-6273710 MsG0380011844.01.T01:intron 35.0%
GTCTCACATTGGATGATATA+AGG + Chr3:6273495-6273514 None:intergenic 35.0%
TACATGAGCTTGAAAATACG+AGG - Chr3:6273042-6273061 MsG0380011844.01.T01:intron 35.0%
TAGAACTAGATAGACCTCTT+TGG + Chr3:6271644-6271663 None:intergenic 35.0%
TCCATTAGTCCTAGTTGTTA+TGG - Chr3:6274072-6274091 MsG0380011844.01.T01:intron 35.0%
TGACTCACATTCATGATAAG+TGG - Chr3:6273649-6273668 MsG0380011844.01.T01:intron 35.0%
TGATGTGTTGAAGAAGAAGA+GGG + Chr3:6271861-6271880 None:intergenic 35.0%
TGGAAATTCTGCCTTTATTG+TGG - Chr3:6275406-6275425 MsG0380011844.01.T01:intron 35.0%
TGGAAATTGTGTCTTCATTG+TGG - Chr3:6275574-6275593 MsG0380011844.01.T01:intron 35.0%
TTCATTGTGTTGGAAGTGAA+GGG - Chr3:6275164-6275183 MsG0380011844.01.T01:intron 35.0%
TTGAAACTCTGTCTTCATTG+TGG - Chr3:6275295-6275314 MsG0380011844.01.T01:intron 35.0%
TTGATGTGTTGAAGAAGAAG+AGG + Chr3:6271862-6271881 None:intergenic 35.0%
TTGTGGTTTGAATGCATAGT+TGG + Chr3:6271560-6271579 None:intergenic 35.0%
TTGTTCCTTTGGATATTCCA+CGG - Chr3:6273154-6273173 MsG0380011844.01.T01:intron 35.0%
! ACTAATACCGTCTTTGAGTT+TGG + Chr3:6275477-6275496 None:intergenic 35.0%
! AGAGTAGATAGTTTGTGATG+TGG + Chr3:6271795-6271814 None:intergenic 35.0%
! AGTTTCTGGATACTCAATTG+AGG + Chr3:6274270-6274289 None:intergenic 35.0%
! CTAATACCGTCTTTGAGTTT+GGG + Chr3:6275476-6275495 None:intergenic 35.0%
! CTTTTTATTAATAGGGGGAG+GGG - Chr3:6273110-6273129 MsG0380011844.01.T01:intron 35.0%
! GAGCAATGGTTAAGCATTTT+CGG + Chr3:6272260-6272279 None:intergenic 35.0%
! GCATATTTCTATTGATGGCA+TGG - Chr3:6274720-6274739 MsG0380011844.01.T01:intron 35.0%
! GCATTGATACTCAACTTAGT+GGG - Chr3:6273582-6273601 MsG0380011844.01.T01:intron 35.0%
! GCTTTTTATTAATAGGGGGA+GGG - Chr3:6273109-6273128 MsG0380011844.01.T01:intron 35.0%
! TGCATTGATACTCAACTTAG+TGG - Chr3:6273581-6273600 MsG0380011844.01.T01:intron 35.0%
! TGCTAGTTTGGTTTACTTCT+AGG + Chr3:6272696-6272715 None:intergenic 35.0%
! TTGATGTATTTCAGGTGAGA+GGG - Chr3:6275761-6275780 MsG0380011844.01.T01:intron 35.0%
! TTTGATGTATTTCAGGTGAG+AGG - Chr3:6275760-6275779 MsG0380011844.01.T01:intron 35.0%
! TTTTTATTAATAGGGGGAGG+GGG - Chr3:6273111-6273130 MsG0380011844.01.T01:intron 35.0%
!! ACCTTTCAAACGGATTTTGT+AGG + Chr3:6273233-6273252 None:intergenic 35.0%
!! CAGTTTTGTAGAGTTACGTT+AGG + Chr3:6273431-6273450 None:intergenic 35.0%
!! CATTGGTCATTGCTTGTTTT+TGG - Chr3:6272076-6272095 MsG0380011844.01.T01:intron 35.0%
!! CCTTTCAAACGGATTTTGTA+GGG + Chr3:6273232-6273251 None:intergenic 35.0%
!! CTAGGCAAATCTTTGTTGTT+TGG + Chr3:6272678-6272697 None:intergenic 35.0%
!! TAAAAAGGCACCTGAAACAT+TGG - Chr3:6270622-6270641 MsG0380011844.01.T01:CDS 35.0%
!! TATCTGTGTACTTTAGAGTC+GGG - Chr3:6273830-6273849 MsG0380011844.01.T01:intron 35.0%
!! TGCTTTTTATTAATAGGGGG+AGG - Chr3:6273108-6273127 MsG0380011844.01.T01:intron 35.0%
!! TTATTGATTTCTACGCGACA+TGG - Chr3:6272169-6272188 MsG0380011844.01.T01:intron 35.0%
!!! AAAGAGTGAGTTTTTGAGTG+AGG + Chr3:6271720-6271739 None:intergenic 35.0%
!!! AAGAGGGTTTTGAATTGAAG+GGG + Chr3:6271690-6271709 None:intergenic 35.0%
!!! CTTTTGCTGCTTTTGTAACA+AGG + Chr3:6270683-6270702 None:intergenic 35.0%
!!! GAAAGAGGGTTTTGAATTGA+AGG + Chr3:6271692-6271711 None:intergenic 35.0%
!!! TTGGGGCTTAAGTTAGTTTT+AGG + Chr3:6270542-6270561 None:intergenic 35.0%
AAAGCAGCAAAAGGGAAGAA+TGG - Chr3:6270690-6270709 MsG0380011844.01.T01:CDS 40.0%
AACTTAGTGGGAAAAGGCTT+TGG - Chr3:6273594-6273613 MsG0380011844.01.T01:intron 40.0%
ACCCAAATGTTGCAATTAGG+CGG + Chr3:6275119-6275138 None:intergenic 40.0%
ACTAGATAGACCTCTTTGGT+TGG + Chr3:6271640-6271659 None:intergenic 40.0%
ATACATGTCAATGTCGTGTC+TGG + Chr3:6275025-6275044 None:intergenic 40.0%
ATCAACAATTAGGTGGCTAG+GGG + Chr3:6275328-6275347 None:intergenic 40.0%
ATTGCCTAGATATATGGCCT+GGG - Chr3:6275203-6275222 MsG0380011844.01.T01:intron 40.0%
CATCAACAATTAGGTGGCTA+GGG + Chr3:6275329-6275348 None:intergenic 40.0%
CATCTTTGTTGCATGCTAAG+AGG + Chr3:6273543-6273562 None:intergenic 40.0%
CCCTACAAAATCCGTTTGAA+AGG - Chr3:6273229-6273248 MsG0380011844.01.T01:intron 40.0%
CTTCACTTCCAACACAATGA+AGG + Chr3:6275165-6275184 None:intergenic 40.0%
CTTCATTGTGTTGGAAGTGA+AGG - Chr3:6275163-6275182 MsG0380011844.01.T01:intron 40.0%
GAAAGACAAACCAACCAAAG+AGG - Chr3:6271627-6271646 MsG0380011844.01.T01:CDS 40.0%
GATCTATGCAGAAGATAGCA+TGG - Chr3:6272975-6272994 MsG0380011844.01.T01:intron 40.0%
GCAACCCAAATGTTGCAATT+AGG + Chr3:6275122-6275141 None:intergenic 40.0%
GCCATATATCTAGGCAATGT+GGG + Chr3:6275201-6275220 None:intergenic 40.0%
GGAAACGGATCAACAAATCT+AGG + Chr3:6275504-6275523 None:intergenic 40.0%
GGCATCTGTTACCTTTCAAA+CGG + Chr3:6273243-6273262 None:intergenic 40.0%
GGTCATGCAAATTGTTCCTT+TGG - Chr3:6273143-6273162 MsG0380011844.01.T01:intron 40.0%
GTTCATTGTAGACATAGAGG+AGG - Chr3:6270344-6270363 MsG0380011844.01.T01:three_prime_UTR 40.0%
TACTCATCACCTGACATAGT+TGG - Chr3:6275904-6275923 MsG0380011844.01.T01:intron 40.0%
TAGGCTCATCAACAATTAGG+TGG + Chr3:6275335-6275354 None:intergenic 40.0%
TATATGGCCTGGGTAAGTTT+AGG - Chr3:6275213-6275232 MsG0380011844.01.T01:intron 40.0%
TCATCAACAATTAGGTGGCT+AGG + Chr3:6275330-6275349 None:intergenic 40.0%
TCCCACATTGCCTAGATATA+TGG - Chr3:6275197-6275216 MsG0380011844.01.T01:intron 40.0%
TCTTGAGCCATTAAGATGCA+TGG + Chr3:6272201-6272220 None:intergenic 40.0%
TGAGGTCGACATATGTTGTA+GGG - Chr3:6276056-6276075 MsG0380011844.01.T01:intron 40.0%
TGAGTGAGGAAAGAGAAAGA+GGG + Chr3:6271706-6271725 None:intergenic 40.0%
TTGAGGTCGACATATGTTGT+AGG - Chr3:6276055-6276074 MsG0380011844.01.T01:intron 40.0%
TTGAGTGAGGAAAGAGAAAG+AGG + Chr3:6271707-6271726 None:intergenic 40.0%
TTGAGTTAAGCTCAACCCAA+TGG + Chr3:6273209-6273228 None:intergenic 40.0%
TTGCTTTGCAAACCACCTAA+AGG - Chr3:6271927-6271946 MsG0380011844.01.T01:intron 40.0%
TTTAAACCAAAACACGCGAC+AGG + Chr3:6272282-6272301 None:intergenic 40.0%
! CATTTGAAGCGTTACATGAG+TGG - Chr3:6273340-6273359 MsG0380011844.01.T01:intron 40.0%
! TTCCAACACAATGAAGGTGT+TGG + Chr3:6275159-6275178 None:intergenic 40.0%
! TTGGCCTCTTTGAAAAGCTT+TGG - Chr3:6270766-6270785 MsG0380011844.01.T01:intron 40.0%
! TTTGTGATGTGGAAGAGTGT+AGG + Chr3:6271784-6271803 None:intergenic 40.0%
!! ACTTTTAGTCCCAAAAGTGC+AGG + Chr3:6274239-6274258 None:intergenic 40.0%
!! CTTTTAGTCCCAAAAGTGCA+GGG + Chr3:6274238-6274257 None:intergenic 40.0%
!! GTCTAGCCTTGTAATTCCAA+GGG + Chr3:6273181-6273200 None:intergenic 40.0%
!! TGTCTAGCCTTGTAATTCCA+AGG + Chr3:6273182-6273201 None:intergenic 40.0%
!! TTTTAGTCCCAAAAGTGCAG+GGG + Chr3:6274237-6274256 None:intergenic 40.0%
!!! AGAGAGAGGTTTTGAAGAGA+AGG + Chr3:6271832-6271851 None:intergenic 40.0%
!!! GCTTGTTTTGTTGCATTTGC+AGG + Chr3:6273902-6273921 None:intergenic 40.0%
AAGTACCAGAAAGACTGGCA+CGG + Chr3:6270748-6270767 None:intergenic 45.0%
AAGTCAGTGGATATGGTGAG+AGG + Chr3:6271894-6271913 None:intergenic 45.0%
AATGTCTAGTCCTAGGCATG+AGG + Chr3:6273324-6273343 None:intergenic 45.0%
AATGTTGCAATTAGGCGGCT+AGG + Chr3:6275114-6275133 None:intergenic 45.0%
AGCCGCCTAATTGCAACATT+TGG - Chr3:6275114-6275133 MsG0380011844.01.T01:intron 45.0%
ATGTCTAGTCCTAGGCATGA+GGG + Chr3:6273323-6273342 None:intergenic 45.0%
ATGTTCCACAAGAGAACCCA+TGG - Chr3:6270578-6270597 MsG0380011844.01.T01:three_prime_UTR 45.0%
ATGTTGCAATTAGGCGGCTA+GGG + Chr3:6275113-6275132 None:intergenic 45.0%
ATTTCTGACCTACAAGCCCA+TGG + Chr3:6270598-6270617 None:intergenic 45.0%
ATTTGCGTTGCCTTCATTGC+AGG - Chr3:6275623-6275642 MsG0380011844.01.T01:intron 45.0%
CATTGCCTAGATATATGGCC+TGG - Chr3:6275202-6275221 MsG0380011844.01.T01:intron 45.0%
CATTGTAGACATAGAGGAGG+AGG - Chr3:6270347-6270366 MsG0380011844.01.T01:three_prime_UTR 45.0%
CGCTTCAAATGTCTAGTCCT+AGG + Chr3:6273331-6273350 None:intergenic 45.0%
CGGTAGGCTCATCAACAATT+AGG + Chr3:6275338-6275357 None:intergenic 45.0%
CTCCAACACCTTCATTGTGT+TGG - Chr3:6275154-6275173 MsG0380011844.01.T01:intron 45.0%
CTTACCCAGGCCATATATCT+AGG + Chr3:6275210-6275229 None:intergenic 45.0%
GAAAATACGAGGAGAGCGAA+AGG - Chr3:6273053-6273072 MsG0380011844.01.T01:intron 45.0%
GCCGCCTAATTGCAACATTT+GGG - Chr3:6275115-6275134 MsG0380011844.01.T01:intron 45.0%
GGAAGACTAATCTGAACGCA+GGG - Chr3:6271504-6271523 MsG0380011844.01.T01:intron 45.0%
GGACAACCCAAACTCAAAGA+CGG - Chr3:6275467-6275486 MsG0380011844.01.T01:intron 45.0%
GGCCATATATCTAGGCAATG+TGG + Chr3:6275202-6275221 None:intergenic 45.0%
GTCAGAGTCTTGCATTAGTC+AGG - Chr3:6272877-6272896 MsG0380011844.01.T01:intron 45.0%
GTGGATATGGTGAGAGGATA+AGG + Chr3:6271888-6271907 None:intergenic 45.0%
GTGTGGTCCATGCATCTTAA+TGG - Chr3:6272191-6272210 MsG0380011844.01.T01:intron 45.0%
TAATCTGAACGCAGGGATGT+CGG - Chr3:6271511-6271530 MsG0380011844.01.T01:intron 45.0%
TCAGCTCCAAATCCCTTCTT+TGG - Chr3:6270864-6270883 MsG0380011844.01.T01:intron 45.0%
TGAGTCTTGGAGCCAAAGAA+GGG + Chr3:6270879-6270898 None:intergenic 45.0%
TGGAAGACTAATCTGAACGC+AGG - Chr3:6271503-6271522 MsG0380011844.01.T01:intron 45.0%
TGGAAGAGAGCCATTGAAGA+TGG + Chr3:6271759-6271778 None:intergenic 45.0%
TGTTCCACAAGAGAACCCAT+GGG - Chr3:6270579-6270598 MsG0380011844.01.T01:three_prime_UTR 45.0%
TTAGGCCTAATCCACGTTCT+AGG + Chr3:6273413-6273432 None:intergenic 45.0%
TTGAGTCTTGGAGCCAAAGA+AGG + Chr3:6270880-6270899 None:intergenic 45.0%
TTGGAGCCAAAGAAGGGATT+TGG + Chr3:6270873-6270892 None:intergenic 45.0%
TTTCTGACCTACAAGCCCAT+GGG + Chr3:6270597-6270616 None:intergenic 45.0%
! AATTTGGCCCCTGCACTTTT+GGG - Chr3:6274227-6274246 MsG0380011844.01.T01:intron 45.0%
! GATGTGGAAGAGTGTAGGAA+TGG + Chr3:6271779-6271798 None:intergenic 45.0%
! GCCTCCAAAGCTTTTCAAAG+AGG + Chr3:6270773-6270792 None:intergenic 45.0%
! GCCTCTTTGAAAAGCTTTGG+AGG - Chr3:6270769-6270788 MsG0380011844.01.T01:intron 45.0%
!! CAACACAATGAAGGTGTTGG+AGG + Chr3:6275156-6275175 None:intergenic 45.0%
!! GAGGGTATTTGCTCCAATGT+TGG - Chr3:6274753-6274772 MsG0380011844.01.T01:intron 45.0%
!!! TGCTGCTTTTGTAACAAGGC+TGG + Chr3:6270679-6270698 None:intergenic 45.0%
!!! TAAAAATTTAAAATTTTCAT+TGG - Chr3:6272059-6272078 MsG0380011844.01.T01:intron 5.0%
AAAACACGCGACAGGAGCAA+TGG + Chr3:6272274-6272293 None:intergenic 50.0%
AAACACACCCCATCATGCTC+GGG + Chr3:6275277-6275296 None:intergenic 50.0%
AACAATTAGGTGGCTAGGGG+AGG + Chr3:6275325-6275344 None:intergenic 50.0%
AAGAGAACCCATGGGCTTGT+AGG - Chr3:6270587-6270606 MsG0380011844.01.T01:three_prime_UTR 50.0%
AAGGCTAGACAGTCGCCATT+GGG - Chr3:6273191-6273210 MsG0380011844.01.T01:intron 50.0%
AATCTGAACGCAGGGATGTC+GGG - Chr3:6271512-6271531 MsG0380011844.01.T01:intron 50.0%
AGGCACCTGAAACATTGGCA+CGG - Chr3:6270627-6270646 MsG0380011844.01.T01:CDS 50.0%
AGGCCAAGTACCAGAAAGAC+TGG + Chr3:6270753-6270772 None:intergenic 50.0%
AGGGACCGTGGAATATCCAA+AGG + Chr3:6273162-6273181 None:intergenic 50.0%
AGTTTAGGCAGCCGTCATTG+TGG - Chr3:6275228-6275247 MsG0380011844.01.T01:intron 50.0%
ATCCACGCTTCAGGCTCATA+GGG - Chr3:6275362-6275381 MsG0380011844.01.T01:intron 50.0%
CAAACACACCCCATCATGCT+CGG + Chr3:6275278-6275297 None:intergenic 50.0%
CAACACACCCTATCGTGCTT+AGG + Chr3:6275556-6275575 None:intergenic 50.0%
CAACACACTCCATCATGCTC+GGG + Chr3:6275388-6275407 None:intergenic 50.0%
CACGGTCCCTTGGAATTACA+AGG - Chr3:6273172-6273191 MsG0380011844.01.T01:intron 50.0%
CATAGGGCCTAAGCACGATA+GGG - Chr3:6275546-6275565 MsG0380011844.01.T01:intron 50.0%
CCAACACACTCCATCATGCT+CGG + Chr3:6275389-6275408 None:intergenic 50.0%
CGCATCCTAGAACGTGGATT+AGG - Chr3:6273405-6273424 MsG0380011844.01.T01:intron 50.0%
CTAAGCACGATAGGGTGTGT+TGG - Chr3:6275554-6275573 MsG0380011844.01.T01:intron 50.0%
CTTGTAATTCCAAGGGACCG+TGG + Chr3:6273174-6273193 None:intergenic 50.0%
GAAGAAGAATGAGGAGGAGG+AGG - Chr3:6270401-6270420 MsG0380011844.01.T01:three_prime_UTR 50.0%
GAAGAGGGAGAAACAGAGAG+AGG + Chr3:6271846-6271865 None:intergenic 50.0%
GAAGTGTGGGACCACAATGA+CGG + Chr3:6275242-6275261 None:intergenic 50.0%
GATTTCTACGCGACATGGTG+TGG - Chr3:6272174-6272193 MsG0380011844.01.T01:intron 50.0%
GGAGAAGAAGAATGAGGAGG+AGG - Chr3:6270398-6270417 MsG0380011844.01.T01:three_prime_UTR 50.0%
GGAGGAGAAGAAGAATGAGG+AGG - Chr3:6270395-6270414 MsG0380011844.01.T01:three_prime_UTR 50.0%
GGAGGAGGAGAAGAAGAATG+AGG - Chr3:6270392-6270411 MsG0380011844.01.T01:three_prime_UTR 50.0%
TCATAGGGCCTAAGCACGAT+AGG - Chr3:6275545-6275564 MsG0380011844.01.T01:intron 50.0%
TCATTGTGGTCCCACACTTC+AGG - Chr3:6275242-6275261 MsG0380011844.01.T01:intron 50.0%
TCCCACACTTCAGGCTCATA+GGG - Chr3:6275251-6275270 MsG0380011844.01.T01:intron 50.0%
TCTGAACGCATCCTAGAACG+TGG - Chr3:6273399-6273418 MsG0380011844.01.T01:intron 50.0%
TCTTACCAACCCTCATGCCT+AGG - Chr3:6273311-6273330 MsG0380011844.01.T01:intron 50.0%
TGAATTTGCACGCGACATGC+AGG - Chr3:6274892-6274911 MsG0380011844.01.T01:intron 50.0%
TGTAGACATAGAGGAGGAGG+AGG - Chr3:6270350-6270369 MsG0380011844.01.T01:three_prime_UTR 50.0%
TGTTGCAATTAGGCGGCTAG+GGG + Chr3:6275112-6275131 None:intergenic 50.0%
TTATTAATAGGGGGAGGGGG+AGG - Chr3:6273114-6273133 MsG0380011844.01.T01:intron 50.0%
TTGGATATTCCACGGTCCCT+TGG - Chr3:6273162-6273181 MsG0380011844.01.T01:intron 50.0%
! AAGGGATTTGGAGCTGACTG+AGG + Chr3:6270861-6270880 None:intergenic 50.0%
! ATTGCTCCTGTCGCGTGTTT+TGG - Chr3:6272273-6272292 MsG0380011844.01.T01:intron 50.0%
! GAATTTGGCCCCTGCACTTT+TGG - Chr3:6274226-6274245 MsG0380011844.01.T01:intron 50.0%
! GTGCCAGTCTTTCTGGTACT+TGG - Chr3:6270747-6270766 MsG0380011844.01.T01:intron 50.0%
!! AGAGTCGGGTTTGCTGTTCT+AGG - Chr3:6273844-6273863 MsG0380011844.01.T01:intron 50.0%
ACGCAAATGCCGCAACTAGG+TGG + Chr3:6275611-6275630 None:intergenic 55.0%
ACGGCTGCCTAAACTTACCC+AGG + Chr3:6275223-6275242 None:intergenic 55.0%
AGACATAGAGGAGGAGGAGG+AGG - Chr3:6270353-6270372 MsG0380011844.01.T01:three_prime_UTR 55.0%
AGCCTGAAGCGTGGATGATG+CGG + Chr3:6275358-6275377 None:intergenic 55.0%
AGGGAAGAATGGCTCGAGCA+TGG - Chr3:6270701-6270720 MsG0380011844.01.T01:CDS 55.0%
ATCTGAACGCAGGGATGTCG+GGG - Chr3:6271513-6271532 MsG0380011844.01.T01:intron 55.0%
CAAGCCCATGGGTTCTCTTG+TGG + Chr3:6270586-6270605 None:intergenic 55.0%
CAAGGCTAGACAGTCGCCAT+TGG - Chr3:6273190-6273209 MsG0380011844.01.T01:intron 55.0%
CATCCACGCTTCAGGCTCAT+AGG - Chr3:6275361-6275380 MsG0380011844.01.T01:intron 55.0%
CTAGGGGAGGATTGCAGTGA+AGG + Chr3:6275096-6275115 None:intergenic 55.0%
CTAGTCCTAGGCATGAGGGT+TGG + Chr3:6273319-6273338 None:intergenic 55.0%
CTCCTCTAGCCACCTAGTTG+CGG - Chr3:6275599-6275618 MsG0380011844.01.T01:intron 55.0%
GAAGAATGAGGAGGAGGAGG+AGG - Chr3:6270404-6270423 MsG0380011844.01.T01:three_prime_UTR 55.0%
GACCACGCCATTGCTAGACA+CGG - Chr3:6270795-6270814 MsG0380011844.01.T01:intron 55.0%
GCAACGCAAATGCCGCAACT+AGG + Chr3:6275614-6275633 None:intergenic 55.0%
GCCCTATGAGCCTGAAGTGT+GGG + Chr3:6275255-6275274 None:intergenic 55.0%
GTCCACGCTTCAGGCTCATA+GGG - Chr3:6275530-6275549 MsG0380011844.01.T01:intron 55.0%
GTCCCACACTTCAGGCTCAT+AGG - Chr3:6275250-6275269 MsG0380011844.01.T01:intron 55.0%
GTGTAGCGAGCCTGCAATGA+AGG + Chr3:6275636-6275655 None:intergenic 55.0%
TACCGCATCATCCACGCTTC+AGG - Chr3:6275353-6275372 MsG0380011844.01.T01:intron 55.0%
TCATAGGGCCCGAGCATGAT+GGG - Chr3:6275266-6275285 MsG0380011844.01.T01:intron 55.0%
TCTGACGAGCCACTCGCTAT+CGG + Chr3:6273367-6273386 None:intergenic 55.0%
TGAAGCGTGGATGATGCGGT+AGG + Chr3:6275354-6275373 None:intergenic 55.0%
! CCGAGCATGATGGAGTGTGT+TGG - Chr3:6275386-6275405 MsG0380011844.01.T01:intron 55.0%
! GGTGTTGGAGGCTGCAATGA+AGG + Chr3:6275144-6275163 None:intergenic 55.0%
AGCCGTGTCTAGCAATGGCG+TGG + Chr3:6270800-6270819 None:intergenic 60.0%
AGCCTGAAGCGTGGACGATG+GGG + Chr3:6275526-6275545 None:intergenic 60.0%
AGCGTGGACGATGGGGGAAA+CGG + Chr3:6275519-6275538 None:intergenic 60.0%
ATGAGTGGCCCGATAGCGAG+TGG - Chr3:6273355-6273374 MsG0380011844.01.T01:intron 60.0%
CACGGCCGTGCCAATGTTTC+AGG + Chr3:6270635-6270654 None:intergenic 60.0%
CATAGAGGAGGAGGAGGAGG+AGG - Chr3:6270356-6270375 MsG0380011844.01.T01:three_prime_UTR 60.0%
CATAGGGCCCGAGCATGATG+GGG - Chr3:6275267-6275286 MsG0380011844.01.T01:intron 60.0%
CGCAACTAGGTGGCTAGAGG+AGG + Chr3:6275601-6275620 None:intergenic 60.0%
CGTCCACGCTTCAGGCTCAT+AGG - Chr3:6275529-6275548 MsG0380011844.01.T01:intron 60.0%
CTCATAGGGCCCGAGCATGA+TGG - Chr3:6275265-6275284 MsG0380011844.01.T01:intron 60.0%
CTGACGAGCCACTCGCTATC+GGG + Chr3:6273366-6273385 None:intergenic 60.0%
GAATGAGGAGGAGGAGGAGG+AGG - Chr3:6270407-6270426 MsG0380011844.01.T01:three_prime_UTR 60.0%
GACACTTGAGCGCAGCGTAG+AGG - Chr3:6273675-6273694 MsG0380011844.01.T01:intron 60.0%
GAGCCTGAAGCGTGGACGAT+GGG + Chr3:6275527-6275546 None:intergenic 60.0%
GCGAGTGGCTCGTCAGATCT+TGG - Chr3:6273370-6273389 MsG0380011844.01.T01:intron 60.0%
GGCACAGCCGTGTCTAGCAA+TGG + Chr3:6270805-6270824 None:intergenic 60.0%
GGCCCTATGAGCCTGAAGTG+TGG + Chr3:6275256-6275275 None:intergenic 60.0%
GGGGAGGATTGCAGTGAAGG+AGG + Chr3:6275093-6275112 None:intergenic 60.0%
TGAGCCTGAAGCGTGGACGA+TGG + Chr3:6275528-6275547 None:intergenic 60.0%
TGCAATTAGGCGGCTAGGGG+AGG + Chr3:6275109-6275128 None:intergenic 60.0%
TGCCGCAACTAGGTGGCTAG+AGG + Chr3:6275604-6275623 None:intergenic 60.0%
ACGGGCCGTGCCAGTCTTTC+TGG - Chr3:6270740-6270759 MsG0380011844.01.T01:intron 65.0%
AGAGGAGGAGGAGGAGGAGG+AGG - Chr3:6270359-6270378 MsG0380011844.01.T01:three_prime_UTR 65.0%
GACCCATGCCTGTGGTGGCA+CGG + Chr3:6270653-6270672 None:intergenic 65.0%
GCCTGAAGCGTGGACGATGG+GGG + Chr3:6275525-6275544 None:intergenic 65.0%
GGCCCTATGAGCCTGAAGCG+TGG + Chr3:6275367-6275386 None:intergenic 65.0%
TCCCCCATCGTCCACGCTTC+AGG - Chr3:6275521-6275540 MsG0380011844.01.T01:intron 65.0%
GAGCATGGCCGTGCCACCAC+AGG - Chr3:6270716-6270735 MsG0380011844.01.T01:intron 70.0%
GCTGGCACGACCCATGCCTG+TGG + Chr3:6270661-6270680 None:intergenic 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG - Chr3:6270362-6270381 MsG0380011844.01.T01:three_prime_UTR 70.0%
GGCACGACCCATGCCTGTGG+TGG + Chr3:6270658-6270677 None:intergenic 70.0%
GGCCGTGCCACCACAGGCAT+GGG - Chr3:6270648-6270667 MsG0380011844.01.T01:CDS 70.0%
TGGCCGTGCCACCACAGGCA+CGG - Chr3:6270721-6270740 MsG0380011844.01.T01:intron 70.0%
!! AGGGGGAGGGGGAGGCACTT+AGG - Chr3:6273122-6273141 MsG0380011844.01.T01:intron 70.0%
ACTGGCACGGCCCGTGCCTG+TGG + Chr3:6270735-6270754 None:intergenic 75.0%
CGGCCGTGCCACCACAGGCA+TGG - Chr3:6270647-6270666 MsG0380011844.01.T01:CDS 75.0%
GGCCCGTGCCTGTGGTGGCA+CGG + Chr3:6270727-6270746 None:intergenic 75.0%
GGCCGTGCCACCACAGGCAC+GGG - Chr3:6270722-6270741 MsG0380011844.01.T01:intron 75.0%
TGGCACGGCCGTGCCACCAC+AGG - Chr3:6270642-6270661 MsG0380011844.01.T01:CDS 75.0%
! GGCACGGCCCGTGCCTGTGG+TGG + Chr3:6270732-6270751 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr3 gene 6270342 6276159 6270342 ID=MsG0380011844.01;Name=MsG0380011844.01
Chr3 mRNA 6270342 6276159 6270342 ID=MsG0380011844.01.T01;Parent=MsG0380011844.01;Name=MsG0380011844.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0.66|0.75|0.75|1|1|4|268|135
Chr3 exon 6270342 6270726 6270342 ID=MsG0380011844.01.T01:exon:2189;Parent=MsG0380011844.01.T01
Chr3 exon 6271588 6271668 6271588 ID=MsG0380011844.01.T01:exon:2188;Parent=MsG0380011844.01.T01
Chr3 exon 6274271 6274393 6274271 ID=MsG0380011844.01.T01:exon:2187;Parent=MsG0380011844.01.T01
Chr3 exon 6276073 6276159 6276073 ID=MsG0380011844.01.T01:exon:2186;Parent=MsG0380011844.01.T01
Chr3 CDS 6276073 6276159 6276073 ID=MsG0380011844.01.T01:cds;Parent=MsG0380011844.01.T01
Chr3 CDS 6274271 6274393 6274271 ID=MsG0380011844.01.T01:cds;Parent=MsG0380011844.01.T01
Chr3 CDS 6271588 6271668 6271588 ID=MsG0380011844.01.T01:cds;Parent=MsG0380011844.01.T01
Chr3 CDS 6270610 6270726 6270610 ID=MsG0380011844.01.T01:cds;Parent=MsG0380011844.01.T01
Chr3 three_prime_UTR 6270342 6270609 6270342 ID=MsG0380011844.01.T01:three_prime_utr;Parent=MsG0380011844.01.T01
Gene Sequence

>MsG0380011844.01.T01

ATGTTCATTGTAGACATAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAGAATGAGGAGGAGGAGGAGGAGAAAAAGTTGTCAGCTCAAGAAATTCAAGAGCTTGTGAAGGGAGATAGAAATGTTCCTCTTATTATTGATTTCTACGCGACATGGTGTGGTCCATGCATCTTAATGGCTCAAGAACTTGAAATGCTTGCAGTCGAGTACGAGAACAATGCGATGATTGTTAAAGTTGATACAGATGATGAGTATGAATTTGCACGCGACATGCAGGTGAGAGGGTTGCCTACCCTATTCTTTATTAGTCCTGATCCAAAAAAAGATGCTATTAGAACTGAAGGGCTTATACCAATACAGATGATGAGAGATATCATTGACAAAGAAATGTAA

Protein sequence

>MsG0380011844.01.T01

MFIVDIEEEEEEEEEEEEEEKKNEEEEEEKKLSAQEIQELVKGDRNVPLIIDFYATWCGPCILMAQELEMLAVEYENNAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPKKDAIRTEGLIPIQMMRDIIDKEM*