AlfalfaGEDB | MsG0380016547.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016547.01

KEGG: K14293
GO: GO:0005488 GO:0005515
PFAM: PF02985

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016547.01.T01	KAE8722463.1	69.62	553	91	5	73	578	1	523	0	744
MsG0380016547.01.T02	KEH35467.1	82.143	140	5	1	1	120	730	869	2.74E-66	225

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016547.01.T01	Q9FJD4	70.874	412	76	3	71	438	1	412	0	556
MsG0380016547.01.T02	Q9FJD4	65.468	139	28	1	2	120	732	870	1.79E-52	179

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016547.01.T01	A0A5D2P5B8	67.103	611	99	6	73	582	1	610	0.0	785
MsG0380016547.01.T02	A0A072V0X7	82.143	140	5	1	1	120	730	869	1.31e-66	225

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000164.01	MsG0380016547.01	0.852691	3.908693e-61	8.234516e-58
MsG0180000544.01	MsG0380016547.01	0.805911	1.061840e-49	5.686540e-47
MsG0180004447.01	MsG0380016547.01	0.840165	1.024826e-57	1.447632e-54
MsG0180004525.01	MsG0380016547.01	0.805785	1.128566e-49	6.024395e-47
MsG0180004544.01	MsG0380016547.01	0.807049	6.111856e-50	3.369873e-47
MsG0180006034.01	MsG0380016547.01	0.860919	1.475748e-63	4.101309e-60
MsG0180006267.01	MsG0380016547.01	0.855764	5.066403e-62	1.182529e-58
MsG0280006912.01	MsG0380016547.01	0.843669	1.215585e-58	1.915884e-55
MsG0280007058.01	MsG0380016547.01	0.820396	7.011409e-53	5.541700e-50
MsG0280007193.01	MsG0380016547.01	0.819338	1.223686e-52	9.389490e-50

Showing 1 to 10 of 37 entries

Previous1 2 3 4Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016547.01.T01	MTR_3g491860	87.781	401	6	2	73	430	1	401	0.0	702
MsG0380016547.01.T01	MTR_3g491860	99.342	152	0	1	431	582	501	651	7.38e-94	306
MsG0380016547.01.T01	MTR_3g491840	79.302	401	39	5	73	430	1	400	0.0	593
MsG0380016547.01.T01	MTR_3g491840	94.079	152	8	1	431	582	500	650	2.87e-87	289
MsG0380016547.01.T01	MTR_8g099785	71.216	403	73	3	71	430	1	403	0.0	572
MsG0380016547.01.T01	MTR_8g099785	75.658	152	34	2	431	582	504	652	1.19e-67	236
MsG0380016547.01.T01	MTR_1g059590	31.769	277	140	10	178	422	3	262	1.78e-19	92.8
MsG0380016547.01.T01	MTR_1g059590	31.679	262	130	10	178	407	3	247	6.30e-18	87.8
MsG0380016547.01.T02	MTR_3g491860	82.143	140	5	1	1	120	730	869	3.32e-70	225
MsG0380016547.01.T02	MTR_3g491840	71.429	140	20	1	1	120	729	868	2.04e-60	198

Showing 1 to 10 of 11 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016547.01.T01	AT5G53480	70.874	412	76	3	71	438	1	412	0.0	556
MsG0380016547.01.T01	AT5G53480	74.233	163	36	3	424	582	492	652	6.18e-70	242
MsG0380016547.01.T01	AT3G08947	60.513	195	69	2	236	430	2	188	5.90e-63	218
MsG0380016547.01.T01	AT3G08947	51.572	159	75	2	426	583	283	440	4.84e-42	160
MsG0380016547.01.T01	AT3G08947	60.513	195	69	2	236	430	2	188	1.50e-62	218
MsG0380016547.01.T01	AT3G08947	51.899	158	74	2	426	582	283	439	6.35e-42	160
MsG0380016547.01.T01	AT2G16950	24.425	348	179	12	142	424	95	423	9.73e-18	87.8
MsG0380016547.01.T01	AT2G16950	24.432	352	178	13	142	424	95	427	6.28e-17	85.1
MsG0380016547.01.T02	AT5G53480	65.468	139	28	1	2	120	732	870	1.82e-53	179
MsG0380016547.01.T02	AT3G08947	43.158	95	53	1	3	97	520	613	2.60e-19	82.4

Showing 1 to 10 of 11 entries

Previous1 2Next

Find 230 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGCCATTGGTGTCGT+TGG	0.535827	3:-84998954	MsG0380016547.01.T02:CDS
AAAATATTCCCTTACTGTGA+TGG	0.505379	3:-84999429	MsG0380016547.01.T02:five_prime_UTR
AAAATCAGGGCCTATCGCAT+AGG	0.593832	3:+84999574	None:intergenic
AAACAGTGGCCTGAACTGAT+AGG	0.477544	3:-85001095	MsG0380016547.01.T01:CDS
AAAGGCTGTTAGGAGTGATG+AGG	0.635593	3:-85000677	MsG0380016547.01.T01:CDS
AAATGCCACTGCCCATGAGG+AGG	0.637700	3:-84999621	MsG0380016547.01.T01:CDS
AACAGATATAGCACGATTGA+TGG	0.383244	3:+84998796	None:intergenic
AACAGATGAAACAGCTCCTT+TGG	0.387973	3:-84999867	MsG0380016547.01.T01:CDS
AACAGCAGAGGGACGAGTGC+AGG	0.444736	3:+85000520	None:intergenic
AACATTACTCAAACAAGAAG+AGG	0.546231	3:-85000494	MsG0380016547.01.T01:CDS

Showing 1 to 10 of 230 entries

Previous1 2 3 4 5…23Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATATTCCCTTACTGTGA+TGG	-	Chr3:85002215-85002234	MsG0380016547.01.T01:intron	30.0%
AACAGAAAAGTAAAATCGGA+AGG	+	Chr3:84999047-84999066	None:intergenic	30.0%
AACATTACTCAAACAAGAAG+AGG	-	Chr3:85001150-85001169	MsG0380016547.01.T01:CDS	30.0%
AATATAGTCATATGACAGTG+TGG	+	Chr3:84999866-84999885	None:intergenic	30.0%
AATTGTACTCCAGAATTCAA+TGG	+	Chr3:85001011-85001030	None:intergenic	30.0%
ACAGAAAAGTAAAATCGGAA+GGG	+	Chr3:84999046-84999065	None:intergenic	30.0%
AGAAAAACAAAAGGCAAAAC+AGG	+	Chr3:85000083-85000102	None:intergenic	30.0%
AGAATATTACCAAACCAGAT+TGG	-	Chr3:85001290-85001309	MsG0380016547.01.T01:intron	30.0%
AGGAGAACTGTAATATTTGT+TGG	+	Chr3:85001540-85001559	None:intergenic	30.0%
AGGAGTCTATAATATTGAAG+AGG	+	Chr3:85000057-85000076	None:intergenic	30.0%

Showing 1 to 10 of 327 entries

Previous1 2 3 4 5…33Next

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	84998793	85002873	84998793	ID=MsG0380016547.01;Name=MsG0380016547.01
Chr3	mRNA	84999532	85002873	84999532	ID=MsG0380016547.01.T01;Parent=MsG0380016547.01;Name=MsG0380016547.01.T01;_AED=0.36;_eAED=0.43;_QI=0\|0\|0\|1\|0.75\|0.6\|5\|0\|583
Chr3	exon	85002671	85002873	85002671	ID=MsG0380016547.01.T01:exon:14413;Parent=MsG0380016547.01.T01
Chr3	exon	85001317	85001500	85001317	ID=MsG0380016547.01.T01:exon:14412;Parent=MsG0380016547.01.T01
Chr3	exon	85000847	85001255	85000847	ID=MsG0380016547.01.T01:exon:14411;Parent=MsG0380016547.01.T01
Chr3	exon	85000288	85000781	85000288	ID=MsG0380016547.01.T01:exon:14410;Parent=MsG0380016547.01.T01
Chr3	exon	84999532	84999993	84999532	ID=MsG0380016547.01.T01:exon:14409;Parent=MsG0380016547.01.T01
Chr3	CDS	85002671	85002873	85002671	ID=MsG0380016547.01.T01:cds;Parent=MsG0380016547.01.T01
Chr3	CDS	85001317	85001500	85001317	ID=MsG0380016547.01.T01:cds;Parent=MsG0380016547.01.T01
Chr3	CDS	85000847	85001255	85000847	ID=MsG0380016547.01.T01:cds;Parent=MsG0380016547.01.T01
Chr3	CDS	85000288	85000781	85000288	ID=MsG0380016547.01.T01:cds;Parent=MsG0380016547.01.T01
Chr3	CDS	84999532	84999993	84999532	ID=MsG0380016547.01.T01:cds;Parent=MsG0380016547.01.T01
Chr3	mRNA	84998793	85000950	84998793	ID=MsG0380016547.01.T02;Parent=MsG0380016547.01;Name=MsG0380016547.01.T02;_AED=0.31;_eAED=0.31;_QI=1644\|0.5\|0.33\|1\|1\|1\|3\|0\|120
Chr3	exon	84998793	84998860	84998793	ID=MsG0380016547.01.T02:exon:14416;Parent=MsG0380016547.01.T02
Chr3	exon	84998922	84998992	84998922	ID=MsG0380016547.01.T02:exon:14415;Parent=MsG0380016547.01.T02
Chr3	exon	84999083	85000950	84999083	ID=MsG0380016547.01.T02:exon:14414;Parent=MsG0380016547.01.T02
Chr3	five_prime_UTR	84999307	85000950	84999307	ID=MsG0380016547.01.T02:five_prime_utr;Parent=MsG0380016547.01.T02
Chr3	CDS	84999083	84999306	84999083	ID=MsG0380016547.01.T02:cds;Parent=MsG0380016547.01.T02
Chr3	CDS	84998922	84998992	84998922	ID=MsG0380016547.01.T02:cds;Parent=MsG0380016547.01.T02
Chr3	CDS	84998793	84998860	84998793	ID=MsG0380016547.01.T02:cds;Parent=MsG0380016547.01.T02

Gene Sequence

>MsG0380016547.01.T01

ATGTTAAAGAAAATATTATCTTTTAGAAATGTTTTCATTTTATTTTTATTTTTAAATATTACTCTGAAACAAAACGAGTATGACCTGGCATCTCTACTTGCGATTGTAACCGCTGTTCCTTCCTTCCTTCCTTCGCTCTTCTTCTCTCTCATTCATTCACTCCTTTCCCTCGCTACTCTTTCAGATCTCTTCTCCGATTTCAGGTATAGCATAGCGATGGAAGTTACTCAGGCACTTTTGAATGCTCAATCCATTGACGGAACTGTACGTAAGCATGCTGAAGAAAGTCTTCGGCAATTTCAGGAGCAAAACCTTCCTGGTTTCTTGGTCTCTCTTTCTGGGGAGTTAGCAAGTGAAGATAAACCATTGATAGCCGAAAGTTGGCAGAGATGGTTGTCATTAGACACTGCAGCGAAGGCCCAGGTTAAGGCATGTTTGCTTCAAACACTCTCCTCTCTTGTACTTGACGCTCGGTCTACAGCAACTCAAGTTGTTGCTAAAATTGCTGGAATTGAGCTTCCTCAGAAACAGTGGCCTGAACTGATAGGATCACTATTATCAAATATTCACCAAGTTCCTGCTCATGTCAAGCAAGCAACTTTGGAGACTCTGGGGTATTTGTGTGAGGAAGTCCCCCATGAGGTTGTTGATCAAGACCAAGTAAATAAAATTCTTACTGCTGTAGTTCAAGGTATGAACTCATCTGAAAAGAACAATGATGTCAGACTTGCTGCTGCCAGGGCATTGTATAATGCTCTCGAATTTGCGCAGGCTAATTTTAGCAATGATATGGAGCCTTTTGAATGTTTGGTCTCCATTGCGGCCATGTATTATGTGAAGTTGGCTCCTTACATCCAGGACATATATAACATCACAGCAAAGGCTGTTAGGAGTGATGAGGAGCCTGTTGCTCTCCAAGCCATTGAATTCTGGAGTACAATTTGTGATGAAGAGACTGATATCTTGGAAGAATATGTGGGTGATACCACTGGGGACTCTGATATACCTTGTTTTTATTTCATTAAGCAAGCCCTTCCTGCACTCGTCCCTCTGCTGTTGGAAACATTACTCAAACAAGAAGAGGATCAAGATCTGGATGAAGGTGCATGGAATATTGCAATGGCAGGTGGTACATGCCTTGGTTTAGTTGCTCGTACTACTGGAGATGATATTGTGCCACTTGTAATGCCTTTCATTGAGGAGAATATTACCAAACCAGATTGGAGACAGAGGGAAGCAGCGACGTATGCATTTGGCTCTATCTTGGAGGGGCCTTCTCCAGACAAATTAGAAATTGTTCAAGCCCTTCTCACTGTCACCCACAGAGAGGATGCTACGGAGTCACGGTTAAGAACTTCAGCATATGAAACATTGAATGAAGTAGTAAGATGTTCAACAGATGAAACAGCTCCTTTGGTGTTGCAACTAGTTTCTGTCATCATGATGGAGCTGCACAAATGTCTTGAAGCACAAAATCTTTCATCTGATGAAAGAGAAAAACAGAGTGAACTTATAGGCCTTCTTTGTGGGTGCTTGACAGTCATTATTCAGAAGCTAGGGTCTTCAGAACCTACCAAATATGTTCTCTTGCAGTATGCTGATCAGATAATGGGACTATTCATCCGGGTCTTTGCTTGTAGAAATGCCACTGCCCATGAGGAGGCCATGCTAGCTATTGGAGCCCTTGCCTATGCGATAGGCCCTGATTTTGCTAAATACCTGCAGCCTGAATTTTACAAGTTTTTGAATTGA

>MsG0380016547.01.T02

ATGTATGCAATGAAGACACTACAAATTGCTGCAGAGATGTACGCCCCACCATCAGGCTTTGACTTGGAAATGACAGAGTACATTAACTCTTTGAGAAATGGGATATTAGAGGCATATTCTGGGATCTTCCAAGGGTTTAAGAATTCATCAAAATCCCAGATCTTGATTCCTTATGCTCCCACACTTCTCCAGTTCTTGGATAGCATATACATGGAAAAAGACATGGATGACATTGTTATGAAAACAGCCATTGGTGTCGTTGGAGATCTAGCTGATACACTTGGAAGCAATGCTGATGATCATATGATTAAAGAATCTGCCGAATGGGCCAAGTTGGCCATCAATCGTGCTATATCTGTTTGA

Protein sequence

>MsG0380016547.01.T01

MLKKILSFRNVFILFLFLNITLKQNEYDLASLLAIVTAVPSFLPSLFFSLIHSLLSLATLSDLFSDFRYSIAMEVTQALLNAQSIDGTVRKHAEESLRQFQEQNLPGFLVSLSGELASEDKPLIAESWQRWLSLDTAAKAQVKACLLQTLSSLVLDARSTATQVVAKIAGIELPQKQWPELIGSLLSNIHQVPAHVKQATLETLGYLCEEVPHEVVDQDQVNKILTAVVQGMNSSEKNNDVRLAAARALYNALEFAQANFSNDMEPFECLVSIAAMYYVKLAPYIQDIYNITAKAVRSDEEPVALQAIEFWSTICDEETDILEEYVGDTTGDSDIPCFYFIKQALPALVPLLLETLLKQEEDQDLDEGAWNIAMAGGTCLGLVARTTGDDIVPLVMPFIEENITKPDWRQREAATYAFGSILEGPSPDKLEIVQALLTVTHREDATESRLRTSAYETLNEVVRCSTDETAPLVLQLVSVIMMELHKCLEAQNLSSDEREKQSELIGLLCGCLTVIIQKLGSSEPTKYVLLQYADQIMGLFIRVFACRNATAHEEAMLAIGALAYAIGPDFAKYLQPEFYKFLN*

>MsG0380016547.01.T02

MYAMKTLQIAAEMYAPPSGFDLEMTEYINSLRNGILEAYSGIFQGFKNSSKSQILIPYAPTLLQFLDSIYMEKDMDDIVMKTAIGVVGDLADTLGSNADDHMIKESAEWAKLAINRAISV*