AlfalfaGEDB | MsG0480022340.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022340.01

KEGG: -
GO: -
PFAM: PF14780

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022340.01.T01	KEH43556.1	66.667	168	25	3	1	165	176	315	2.65E-51	186

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022340.01.T01	A0A072VPG9	66.667	168	25	3	1	165	176	315	1.26e-51	186

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048878.01	MsG0480022340.01	-0.811104	8.272707e-51	5.075939e-48
MsG0180000152.01	MsG0480022340.01	-0.810728	9.975602e-51	6.060138e-48
MsG0180000544.01	MsG0480022340.01	0.822718	2.039485e-53	1.720718e-50
MsG0180002482.01	MsG0480022340.01	-0.832313	1.015126e-55	1.130282e-52
MsG0180003697.01	MsG0480022340.01	-0.809202	2.125622e-50	1.240262e-47
MsG0180004750.01	MsG0480022340.01	-0.817125	3.877794e-52	2.799848e-49
MsG0180005169.01	MsG0480022340.01	-0.802866	4.577907e-49	2.267086e-46
MsG0180005927.01	MsG0480022340.01	-0.800293	1.542451e-48	7.156021e-46
MsG0280006306.01	MsG0480022340.01	0.803540	3.320593e-49	1.673120e-46
MsG0280006422.01	MsG0480022340.01	-0.802307	5.970206e-49	2.914926e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022340.01.T01	MTR_1g096410	66.667	168	25	3	1	165	176	315	3.21e-55	186
MsG0480022340.01.T01	MTR_1g096410	66.667	168	25	3	1	165	176	315	6.31e-55	189
MsG0480022340.01.T01	MTR_4g088440	73.387	124	24	2	218	335	1	121	1.66e-54	177
MsG0480022340.01.T01	MTR_3g019330	69.697	132	31	2	210	335	47	175	1.63e-52	180
MsG0480022340.01.T01	MTR_4g088440	70.909	110	23	2	232	335	1	107	7.64e-43	149
MsG0480022340.01.T01	MTR_4g088430	96.875	32	1	0	160	191	28	59	4.88e-15	73.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022340.01.T01	AT1G50910	49.194	124	60	1	220	340	4	127	6.21e-25	105
MsG0480022340.01.T01	AT1G65280	40.000	160	62	5	9	165	202	330	3.62e-15	77.0
MsG0480022340.01.T01	AT1G65280	40.000	160	62	5	9	165	202	330	3.62e-15	77.0

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Find 106 sgRNAs with CRISPR-Local

Find 705 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACGAATCTTCTGTTT+TGG	0.324292	4:-71418712	None:intergenic
AAAGTAGGGGAGGCTTTAGA+AGG	0.478117	4:-71407538	None:intergenic
AACAACATCTAAAGTAGGGG+AGG	0.624738	4:-71407548	None:intergenic
AACAGCCCATATGATGTTCT+AGG	0.376709	4:+71408773	MsG0480022340.01.T01:CDS
AACCACATGATACTAGTAGA+AGG	0.479545	4:-71420397	None:intergenic
AACTCAGCAGACGGCATTGC+AGG	0.282019	4:-71407816	None:intergenic
AATAATCCTAGAACATCATA+TGG	0.371638	4:-71408779	None:intergenic
AATCTCACTTGTTATCGATT+AGG	0.304008	4:+71408103	MsG0480022340.01.T01:CDS
AATTTCATCGGTGGAAGATT+GGG	0.433155	4:-71407138	None:intergenic
AATTTGAAACAGTCGAGGGG+CGG	0.679861	4:+71418262	MsG0480022340.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAATGTGAGGAAATGT+CGG	-	Chr4:71412038-71412057	None:intergenic	30.0%
AAATGACCTACATAACTATG+CGG	+	Chr4:71413689-71413708	MsG0480022340.01.T01:intron	30.0%
AATATTCATGCAAGGAAAAG+AGG	+	Chr4:71419000-71419019	MsG0480022340.01.T01:intron	30.0%
AATTAAACTTCTCTGTCACA+TGG	+	Chr4:71408817-71408836	MsG0480022340.01.T01:intron	30.0%
ACAAACCTAAATGAGAAGTT+GGG	-	Chr4:71412393-71412412	None:intergenic	30.0%
ACAAACTTATCTTCAATGCA+AGG	-	Chr4:71411586-71411605	None:intergenic	30.0%
ACACATTAATTGATGTTGAG+AGG	+	Chr4:71419665-71419684	MsG0480022340.01.T01:intron	30.0%
ACAGATTGCAAGATTATTCT+CGG	-	Chr4:71411362-71411381	None:intergenic	30.0%
ACATAGTACCTTCTTTCATT+TGG	+	Chr4:71413660-71413679	MsG0480022340.01.T01:intron	30.0%
ACCTTAAAAGTGACATCATA+AGG	-	Chr4:71416752-71416771	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	71407064	71420429	71407064	ID=MsG0480022340.01;Name=MsG0480022340.01
Chr4	mRNA	71407064	71420429	71407064	ID=MsG0480022340.01.T01;Parent=MsG0480022340.01;Name=MsG0480022340.01.T01;_AED=0.56;_eAED=0.57;_QI=346\|0.44\|0.5\|0.9\|0.33\|0.3\|10\|0\|347
Chr4	exon	71407064	71407226	71407064	ID=MsG0480022340.01.T01:exon:2448;Parent=MsG0480022340.01.T01
Chr4	exon	71407406	71407719	71407406	ID=MsG0480022340.01.T01:exon:2449;Parent=MsG0480022340.01.T01
Chr4	exon	71407806	71407886	71407806	ID=MsG0480022340.01.T01:exon:2450;Parent=MsG0480022340.01.T01
Chr4	exon	71407994	71408149	71407994	ID=MsG0480022340.01.T01:exon:2451;Parent=MsG0480022340.01.T01
Chr4	exon	71408718	71408830	71408718	ID=MsG0480022340.01.T01:exon:2452;Parent=MsG0480022340.01.T01
Chr4	exon	71412570	71412708	71412570	ID=MsG0480022340.01.T01:exon:2453;Parent=MsG0480022340.01.T01
Chr4	exon	71418221	71418395	71418221	ID=MsG0480022340.01.T01:exon:2454;Parent=MsG0480022340.01.T01
Chr4	exon	71418628	71418740	71418628	ID=MsG0480022340.01.T01:exon:2455;Parent=MsG0480022340.01.T01
Chr4	exon	71419543	71419612	71419543	ID=MsG0480022340.01.T01:exon:2456;Parent=MsG0480022340.01.T01
Chr4	exon	71420364	71420429	71420364	ID=MsG0480022340.01.T01:exon:2457;Parent=MsG0480022340.01.T01
Chr4	five_prime_UTR	71407064	71407226	71407064	ID=MsG0480022340.01.T01:five_prime_utr;Parent=MsG0480022340.01.T01
Chr4	five_prime_UTR	71407406	71407588	71407406	ID=MsG0480022340.01.T01:five_prime_utr;Parent=MsG0480022340.01.T01
Chr4	CDS	71407589	71407719	71407589	ID=MsG0480022340.01.T01:cds;Parent=MsG0480022340.01.T01
Chr4	CDS	71407806	71407886	71407806	ID=MsG0480022340.01.T01:cds;Parent=MsG0480022340.01.T01
Chr4	CDS	71407994	71408149	71407994	ID=MsG0480022340.01.T01:cds;Parent=MsG0480022340.01.T01
Chr4	CDS	71408718	71408830	71408718	ID=MsG0480022340.01.T01:cds;Parent=MsG0480022340.01.T01
Chr4	CDS	71412570	71412708	71412570	ID=MsG0480022340.01.T01:cds;Parent=MsG0480022340.01.T01
Chr4	CDS	71418221	71418395	71418221	ID=MsG0480022340.01.T01:cds;Parent=MsG0480022340.01.T01
Chr4	CDS	71418628	71418740	71418628	ID=MsG0480022340.01.T01:cds;Parent=MsG0480022340.01.T01
Chr4	CDS	71419543	71419612	71419543	ID=MsG0480022340.01.T01:cds;Parent=MsG0480022340.01.T01
Chr4	CDS	71420364	71420429	71420364	ID=MsG0480022340.01.T01:cds;Parent=MsG0480022340.01.T01

Gene Sequence

>MsG0480022340.01.T01

ATGCATCCGGGGAATGATCGAGCTGATCATTCTGCAGAATTGCCTGAAACATGTTCGGTTCCAGCTGAGCAGATGGTAAACGACCATTCGACAGAATCTCCCGAGGATCATTCTGGTGGTCCTAGAAAAAGGGTGATTGGCCCTGCAATGCCGTCTGCTGAGTTACTTGCTGCTGCTGCCGCCAAATTAACAGAAGCACAAAACGAATTCAGAGAAGCTGACTTGGACGACGCTACTGAACTATTTGTGGGACCTCCACCTCCTGCTATGGTTTCTGAAGCAGAATCAGCTAACGAATCAGAACGTTTTGAAGAGGTATTTAATCTCACTTGTTATCGATTAGGATCAAATTGTTGTTTGTTCTTCAATATTAGTAATCACCTGTTCATGTATCATGTCACCAGGATAATGGAAGTTGAGATCAACAGCCCATATGATGTTCTAGGATTATTTTATATTGTTAATTTAATTAAACTTCTCTATCGGTTGGGAATAGATGATTTTGATGTGGAAGAAGAGGTGAGACCAGATTTCCCTTGTCCGTATTGTTATGAAGAGTTTGACATAGGATCTTGTGTTCTCATCTTGAAGATGAACATTCATGTGAATCAAGAGTTACGTTCTGCCGTTGGATTAAATTGCAAGGATTCGATGGGTACTGAATTTGAAACAGTCGAGGGGCGGATAACATCCATGCTTTCGCAGCTCCATTGTGAATGTGGAATACTTGAAAGATTGGTATACAAGAATAAGAATCAGCACCGCCGCTCTTCCTATTTCCAGCATCTTTTGAAGGTGCGGAGGGATTTAAATCTTCTACAGTTGGCAAACGTAGAGGAGCTTGTAACATCATGTTTCAATGTTATCAAAGGAGATAGACCAAAACAGAAGATTCGTCTTTTAGAGAGCAATAATAAATTAAGATCGTTGAGTTTCTACTGTGCTGGCTCATTAGCTGCTTCCTTTCCCATGCCTAGAATGGTTGAACCAATTTTGAAGGCTGCGATGTATCCTTCTACTAGTATCATGTGGTTTATATTGTAA

Protein sequence

>MsG0480022340.01.T01

MHPGNDRADHSAELPETCSVPAEQMVNDHSTESPEDHSGGPRKRVIGPAMPSAELLAAAAAKLTEAQNEFREADLDDATELFVGPPPPAMVSEAESANESERFEEVFNLTCYRLGSNCCLFFNISNHLFMYHVTRIMEVEINSPYDVLGLFYIVNLIKLLYRLGIDDFDVEEEVRPDFPCPYCYEEFDIGSCVLILKMNIHVNQELRSAVGLNCKDSMGTEFETVEGRITSMLSQLHCECGILERLVYKNKNQHRRSSYFQHLLKVRRDLNLLQLANVEELVTSCFNVIKGDRPKQKIRLLESNNKLRSLSFYCAGSLAASFPMPRMVEPILKAAMYPSTSIMWFIL*