AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012122.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012122.01.T01 MTR_1g037680 97.170 106 3 0 28 133 81 186 6.09e-73 216
MsG0380012122.01.T01 MTR_3g014240 81.818 88 16 0 19 106 67 154 4.28e-46 147
MsG0380012122.01.T01 MTR_3g089065 29.091 110 75 2 22 131 65 171 1.29e-12 61.6
MsG0380012122.01.T01 MTR_1g114290 36.145 83 51 1 38 120 82 162 1.41e-12 62.0
MsG0380012122.01.T01 MTR_2g079420 27.434 113 73 2 26 131 61 171 2.79e-11 58.2
MsG0380012122.01.T01 MTR_5g021180 40.678 59 34 1 47 105 33 90 3.36e-11 57.0
MsG0380012122.01.T01 MTR_1g098660 33.766 77 50 1 26 102 61 136 8.90e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012122.01.T01 AT3G06730 91.509 106 9 0 28 133 78 183 2.52e-70 209
MsG0380012122.01.T01 AT1G50320 34.118 85 56 0 46 130 89 173 4.35e-12 60.5

Find 41 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATAATTGTAGCCTATTT+TGG 0.101435 3:+11170977 MsG0380012122.01.T01:three_prime_UTR
CTAACCAATTCATATGAATT+TGG 0.168019 3:+11171015 MsG0380012122.01.T01:three_prime_UTR
CTTCAATTCTGTCCCAAAAT+AGG 0.291332 3:-11170990 None:intergenic
AAAGCCAAATTCATATGAAT+TGG 0.338463 3:-11171019 None:intergenic
GTGTGGTCCATGCATCTTAA+TGG 0.366660 3:+11167059 MsG0380012122.01.T01:CDS
TTTGATGTATTTCAGGTAAG+AGG 0.368265 3:+11170782 MsG0380012122.01.T01:intron
GAAGAATGAGGAGGAGGAGG+AGG 0.371035 3:+11165288 MsG0380012122.01.T01:CDS
AAAGAAATGTAAAACAGTTA+AGG 0.375104 3:+11170902 MsG0380012122.01.T01:exon
GATCAGGACTAATAAAGAAT+AGG 0.400554 3:-11170814 None:intergenic
GATTAATTATGTAATGTTTG+AGG 0.426456 3:+11171060 MsG0380012122.01.T01:three_prime_UTR
AGACATAGAGGAGGAGGAGG+AGG 0.426502 3:+11165243 MsG0380012122.01.T01:CDS
GAAGAAGAATGAGGAGGAGG+AGG 0.427497 3:+11165285 MsG0380012122.01.T01:CDS
TATACCAAACAGCATCTTGT+AGG 0.431419 3:-11170960 None:intergenic
AGATCCTACAAGATGCTGTT+TGG 0.439444 3:+11170956 MsG0380012122.01.T01:three_prime_UTR
AATGGCTCAAGAACTTGAAA+TGG 0.441341 3:+11167077 MsG0380012122.01.T01:CDS
ATCAGGACTAATAAAGAATA+GGG 0.446630 3:-11170813 None:intergenic
AAGAAATGTAAAACAGTTAA+GGG 0.448450 3:+11170903 MsG0380012122.01.T01:exon
ATATCTCTCATCATCTGTAT+TGG 0.448708 3:-11170872 None:intergenic
GGAGAAGAAGAATGAGGAGG+AGG 0.451682 3:+11165282 MsG0380012122.01.T01:CDS
CTCTATGTCTACAATGAACA+TGG 0.457945 3:-11165230 None:intergenic
TTGAGGTCGACATATGTTGT+AGG 0.467759 3:+11171077 MsG0380012122.01.T01:three_prime_UTR
CATTGTAGACATAGAGGAGG+AGG 0.472616 3:+11165237 MsG0380012122.01.T01:CDS
AAAGATGCTATTAGAACTGA+AGG 0.473614 3:+11170842 MsG0380012122.01.T01:CDS
GCGTAGAAATCAATAATAAG+AGG 0.481926 3:-11167030 None:intergenic
TACTCATCATCTGACATAGT+TGG 0.497993 3:+11170926 MsG0380012122.01.T01:three_prime_UTR
TGTAGACATAGAGGAGGAGG+AGG 0.512603 3:+11165240 MsG0380012122.01.T01:CDS
TCTTGAGCCATTAAGATGCA+TGG 0.532979 3:-11167066 None:intergenic
GGAGGAGGAGAAGAAGAATG+AGG 0.534178 3:+11165276 MsG0380012122.01.T01:CDS
TGAGGTCGACATATGTTGTA+GGG 0.538411 3:+11171078 MsG0380012122.01.T01:three_prime_UTR
TTGATGTATTTCAGGTAAGA+GGG 0.540490 3:+11170783 MsG0380012122.01.T01:intron
TGAATTTGCACGCGACATGC+AGG 0.541865 3:+11169881 MsG0380012122.01.T01:CDS
GGACTAATAAAGAATAGGGT+AGG 0.548631 3:-11170809 None:intergenic
GATTTCTACGCGACATGGTG+TGG 0.564485 3:+11167042 MsG0380012122.01.T01:CDS
TTATTGATTTCTACGCGACA+TGG 0.587417 3:+11167037 MsG0380012122.01.T01:CDS
GGAGGAGAAGAAGAATGAGG+AGG 0.588392 3:+11165279 MsG0380012122.01.T01:CDS
GAAATTCAAGAGCTTGTGAA+GGG 0.595327 3:+11166994 MsG0380012122.01.T01:CDS
AGAAATTCAAGAGCTTGTGA+AGG 0.600875 3:+11166993 MsG0380012122.01.T01:CDS
CATGTTCATTGTAGACATAG+AGG 0.631916 3:+11165231 None:intergenic
GTTCATTGTAGACATAGAGG+AGG 0.676986 3:+11165234 MsG0380012122.01.T01:CDS
AAGATGCTATTAGAACTGAA+GGG 0.684088 3:+11170843 MsG0380012122.01.T01:CDS
TCTATGTCTACAATGAACAT+GGG 0.684742 3:-11165229 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTCATCAAAAATATAAA+GGG - Chr3:11169170-11169189 None:intergenic 10.0%
!! ACAATTATTGTAATAATAAT+TGG + Chr3:11167617-11167636 MsG0380012122.01.T01:intron 10.0%
!! ACTAAAATTAAAATTAAGTA+AGG - Chr3:11166099-11166118 None:intergenic 10.0%
!! TTGGATAAATAATTAATTAA+GGG + Chr3:11167354-11167373 MsG0380012122.01.T01:intron 10.0%
!! TTTGGATAAATAATTAATTA+AGG + Chr3:11167353-11167372 MsG0380012122.01.T01:intron 10.0%
!!! GATTTTTTAATACTAAATTT+GGG + Chr3:11166884-11166903 MsG0380012122.01.T01:intron 10.0%
!!! TAAAAATTGAAAATTTTCAT+TGG + Chr3:11166944-11166963 MsG0380012122.01.T01:intron 10.0%
!!! TGATTTTTTAATACTAAATT+TGG + Chr3:11166883-11166902 MsG0380012122.01.T01:intron 10.0%
!! AATAACTATTATACAAGTAT+TGG - Chr3:11169480-11169499 None:intergenic 15.0%
!! CAAATTCATCAAAAATATAA+AGG - Chr3:11169171-11169190 None:intergenic 15.0%
!! TAAAACTCCTTAAAATATTT+AGG + Chr3:11167325-11167344 MsG0380012122.01.T01:intron 15.0%
!! TGTGCAAAAAAAATATTATA+AGG - Chr3:11166122-11166141 None:intergenic 15.0%
!! TTGTATTCTAAACTATATTT+AGG + Chr3:11167993-11168012 MsG0380012122.01.T01:intron 15.0%
!!! AAACTAATTTTGTTTTATCA+AGG - Chr3:11166156-11166175 None:intergenic 15.0%
!!! ATGATGATTTTTATTAATAG+GGG + Chr3:11168088-11168107 MsG0380012122.01.T01:intron 15.0%
!!! CATGATGATTTTTATTAATA+GGG + Chr3:11168087-11168106 MsG0380012122.01.T01:intron 15.0%
!!! GTTATTAGTTTTATAGATTT+TGG + Chr3:11167263-11167282 MsG0380012122.01.T01:intron 15.0%
!!! TCATGATGATTTTTATTAAT+AGG + Chr3:11168086-11168105 MsG0380012122.01.T01:intron 15.0%
!!! TTCTATCATAAATCATATTT+TGG - Chr3:11167865-11167884 None:intergenic 15.0%
!! AAAAACCAGTATGAAATAAT+TGG - Chr3:11169637-11169656 None:intergenic 20.0%
!! AAAGAAATGTAAAACAGTTA+AGG + Chr3:11170902-11170921 MsG0380012122.01.T01:exon 20.0%
!! AAATTACTTTGATTGTAAAC+TGG - Chr3:11169424-11169443 None:intergenic 20.0%
!! AAGAAATGTAAAACAGTTAA+GGG + Chr3:11170903-11170922 MsG0380012122.01.T01:exon 20.0%
!! ACTACTTGACATAATTTAAT+TGG + Chr3:11166002-11166021 MsG0380012122.01.T01:intron 20.0%
!! AGATTCATGAAAAGTAAAAT+AGG + Chr3:11169300-11169319 MsG0380012122.01.T01:intron 20.0%
!! ATAGTTGGATGTTATAATTA+GGG - Chr3:11166429-11166448 None:intergenic 20.0%
!! ATTTATGATAGAACATTATG+GGG + Chr3:11167872-11167891 MsG0380012122.01.T01:intron 20.0%
!! CATTATAATGTCACATTTAT+AGG + Chr3:11165955-11165974 MsG0380012122.01.T01:intron 20.0%
!! GATTAATTATGTAATGTTTG+AGG + Chr3:11171060-11171079 MsG0380012122.01.T01:three_prime_UTR 20.0%
!! GATTTATGATAGAACATTAT+GGG + Chr3:11167871-11167890 MsG0380012122.01.T01:intron 20.0%
!! TAAGAGTTATTGAATATTGT+TGG + Chr3:11170057-11170076 MsG0380012122.01.T01:intron 20.0%
!! TGATTTATGATAGAACATTA+TGG + Chr3:11167870-11167889 MsG0380012122.01.T01:intron 20.0%
!!! AAAAAAATATTTGAGACGTT+TGG + Chr3:11167730-11167749 MsG0380012122.01.T01:intron 20.0%
!!! AACAAGTCCTAAATATTTTA+AGG - Chr3:11167335-11167354 None:intergenic 20.0%
!!! AACTGTAAAATAAAAAGTGT+AGG + Chr3:11169274-11169293 MsG0380012122.01.T01:intron 20.0%
!!! ACTGTAAAATAAAAAGTGTA+GGG + Chr3:11169275-11169294 MsG0380012122.01.T01:intron 20.0%
!!! ACTTTTTATTTTACAGTTTC+TGG - Chr3:11169272-11169291 None:intergenic 20.0%
!!! ATAAACTTTTGATGTATTTC+AGG + Chr3:11170775-11170794 MsG0380012122.01.T01:intron 20.0%
!!! ATAATATTTTTTTTGCACAC+AGG + Chr3:11166123-11166142 MsG0380012122.01.T01:intron 20.0%
!!! ATTGCTTGTTATTTAATTTC+AGG - Chr3:11165805-11165824 None:intergenic 20.0%
!!! GTTAATTTCTTAAACTTTTG+AGG + Chr3:11169683-11169702 MsG0380012122.01.T01:intron 20.0%
!!! TAAAATATTTAGGACTTGTT+TGG + Chr3:11167335-11167354 MsG0380012122.01.T01:intron 20.0%
!!! TAATATTTTTTTTGCACACA+GGG + Chr3:11166124-11166143 MsG0380012122.01.T01:intron 20.0%
!!! TGATGATTTTTATTAATAGG+GGG + Chr3:11168089-11168108 MsG0380012122.01.T01:intron 20.0%
!!! TGTTTTTTCATATGATATCT+TGG + Chr3:11167394-11167413 MsG0380012122.01.T01:intron 20.0%
!!! TTTTTTCCTCTAATTTTTGT+AGG - Chr3:11169940-11169959 None:intergenic 20.0%
! AAAAGATGATTTGATATGTC+TGG + Chr3:11165382-11165401 MsG0380012122.01.T01:intron 25.0%
! AAAATTAAACTCTGCTAGTT+TGG - Chr3:11167558-11167577 None:intergenic 25.0%
! AAACTAATAACGAACTAAAG+CGG - Chr3:11167254-11167273 None:intergenic 25.0%
! AAACTTTATAAACATTACCC+AGG - Chr3:11170217-11170236 None:intergenic 25.0%
! AAAGCCAAATTCATATGAAT+TGG - Chr3:11171022-11171041 None:intergenic 25.0%
! AACTACCAATTATTTCATAC+TGG + Chr3:11169629-11169648 MsG0380012122.01.T01:intron 25.0%
! AAGAATGATAATCTCAGTAA+AGG - Chr3:11167204-11167223 None:intergenic 25.0%
! AATAATAGTTCACCAGAAAA+TGG + Chr3:11167301-11167320 MsG0380012122.01.T01:intron 25.0%
! AATACTACATTCCATATAAC+CGG - Chr3:11168694-11168713 None:intergenic 25.0%
! ACGTTTATTACACACATAAT+TGG + Chr3:11170709-11170728 MsG0380012122.01.T01:intron 25.0%
! ACTAATACCATCTTTGAATT+TGG - Chr3:11170480-11170499 None:intergenic 25.0%
! ACTTGTGTGAATATTTAAGA+GGG - Chr3:11167481-11167500 None:intergenic 25.0%
! AGGAAAAAAGAAACATATCA+TGG + Chr3:11169951-11169970 MsG0380012122.01.T01:intron 25.0%
! ATATATGAAAGATTGAGTCT+TGG - Chr3:11165777-11165796 None:intergenic 25.0%
! ATCAGGACTAATAAAGAATA+GGG - Chr3:11170816-11170835 None:intergenic 25.0%
! ATTCTACTGATGTATTTCTT+GGG - Chr3:11165444-11165463 None:intergenic 25.0%
! CATAAAATATGTAAGCTTGT+TGG - Chr3:11169664-11169683 None:intergenic 25.0%
! CATAGTTGGATGTTATAATT+AGG - Chr3:11166430-11166449 None:intergenic 25.0%
! CTAACCAATTCATATGAATT+TGG + Chr3:11171015-11171034 MsG0380012122.01.T01:three_prime_UTR 25.0%
! CTAATACCATCTTTGAATTT+GGG - Chr3:11170479-11170498 None:intergenic 25.0%
! GAATTGTTAAAATAGATGTC+AGG + Chr3:11168855-11168874 MsG0380012122.01.T01:intron 25.0%
! GATTATCCTACAAAAATTAG+AGG + Chr3:11169931-11169950 MsG0380012122.01.T01:intron 25.0%
! GGGTAATGTTTATAAAGTTT+AGG + Chr3:11170217-11170236 MsG0380012122.01.T01:intron 25.0%
! TCAACATCAATTCATTCAAA+CGG - Chr3:11168615-11168634 None:intergenic 25.0%
! TGGAAATTATGTCTTCATTA+TGG + Chr3:11170577-11170596 MsG0380012122.01.T01:intron 25.0%
!! ACTTTTAGCGATTAAAAGAT+TGG + Chr3:11166287-11166306 MsG0380012122.01.T01:intron 25.0%
!! ATAGTATGGTTGTTAATTTG+AGG + Chr3:11169723-11169742 MsG0380012122.01.T01:intron 25.0%
!! ATCAAATCATCTTTTGTTCT+TGG - Chr3:11165377-11165396 None:intergenic 25.0%
!! CAACAAAACAAGCTTAATTT+TGG + Chr3:11168898-11168917 MsG0380012122.01.T01:intron 25.0%
!! GTATAATTGTAGCCTATTTT+GGG + Chr3:11170978-11170997 MsG0380012122.01.T01:three_prime_UTR 25.0%
!! TAGTATGGTTGTTAATTTGA+GGG + Chr3:11169724-11169743 MsG0380012122.01.T01:intron 25.0%
!! TATTCTTTATTTGCCAACAT+TGG - Chr3:11169758-11169777 None:intergenic 25.0%
!! TCTTTAACATGTTTTCCTTT+AGG - Chr3:11166829-11166848 None:intergenic 25.0%
!! TCTTTTAATCGCTAAAAGTA+TGG - Chr3:11166286-11166305 None:intergenic 25.0%
!! TTTTTGTATTTTCTTGCTAG+TGG + Chr3:11166367-11166386 MsG0380012122.01.T01:intron 25.0%
!!! AAAACATAGTTTTGTGTTCA+TGG - Chr3:11169015-11169034 None:intergenic 25.0%
!!! CTGTAATTAGTGTTTTTAAG+TGG - Chr3:11165895-11165914 None:intergenic 25.0%
!!! CTTTTAATCGCTAAAAGTAT+GGG - Chr3:11166285-11166304 None:intergenic 25.0%
!!! GTTCTAATAGCATCTTTTTT+TGG - Chr3:11170839-11170858 None:intergenic 25.0%
!!! TAGATTTTGGATTCTGAAAT+TGG + Chr3:11167276-11167295 MsG0380012122.01.T01:intron 25.0%
!!! TCTAGTGTTATTTAGAATGA+AGG - Chr3:11169378-11169397 None:intergenic 25.0%
!!! TTTTAATCGCTAAAAGTATG+GGG - Chr3:11166284-11166303 None:intergenic 25.0%
AAAGATGCTATTAGAACTGA+AGG + Chr3:11170842-11170861 MsG0380012122.01.T01:CDS 30.0%
AAGATGCTATTAGAACTGAA+GGG + Chr3:11170843-11170862 MsG0380012122.01.T01:CDS 30.0%
AAGCTGCACAAATTTATTGA+AGG - Chr3:11169805-11169824 None:intergenic 30.0%
AATCGTGAATTTGAGAAAAC+TGG + Chr3:11169331-11169350 MsG0380012122.01.T01:intron 30.0%
AATGAAAATGAGCATACAAG+TGG - Chr3:11168255-11168274 None:intergenic 30.0%
ACGTATAAACGTGATTAAGA+TGG - Chr3:11170693-11170712 None:intergenic 30.0%
AGATCTTGTGCAAAAATATC+AGG - Chr3:11165711-11165730 None:intergenic 30.0%
ATAGAACATTATGGGGTAAT+TGG + Chr3:11167879-11167898 MsG0380012122.01.T01:intron 30.0%
ATATCTCTCATCATCTGTAT+TGG - Chr3:11170875-11170894 None:intergenic 30.0%
ATCGTGAATTTGAGAAAACT+GGG + Chr3:11169332-11169351 MsG0380012122.01.T01:intron 30.0%
ATGAAAATGAGCATACAAGT+GGG - Chr3:11168254-11168273 None:intergenic 30.0%
ATTTGATGAACTGAACTCAA+GGG + Chr3:11169547-11169566 MsG0380012122.01.T01:intron 30.0%
CACTTGTGTGAATATTTAAG+AGG - Chr3:11167482-11167501 None:intergenic 30.0%
CATTCTACTGATGTATTTCT+TGG - Chr3:11165445-11165464 None:intergenic 30.0%
CTAAAATCTTCCATCTTCAA+TGG + Chr3:11166630-11166649 MsG0380012122.01.T01:intron 30.0%
GATCAGGACTAATAAAGAAT+AGG - Chr3:11170817-11170836 None:intergenic 30.0%
GCGTAGAAATCAATAATAAG+AGG - Chr3:11167033-11167052 None:intergenic 30.0%
GGTCAGAAATCAACTAAAAA+AGG + Chr3:11165492-11165511 MsG0380012122.01.T01:intron 30.0%
GTAAATTCAGTTGACAACAA+TGG + Chr3:11167585-11167604 MsG0380012122.01.T01:intron 30.0%
GTTGACTACAAAAAACAAAG+TGG - Chr3:11168774-11168793 None:intergenic 30.0%
TAAAATAGATGTCAGGATTC+TGG + Chr3:11168862-11168881 MsG0380012122.01.T01:intron 30.0%
TCAATGCATTTATCCAAGAT+TGG - Chr3:11168558-11168577 None:intergenic 30.0%
TCATGAAAGTAACGTGTATT+AGG - Chr3:11169196-11169215 None:intergenic 30.0%
TGAAGTAACATAATAGATCC+AGG + Chr3:11168965-11168984 MsG0380012122.01.T01:intron 30.0%
TGTCAACTGAATTTACTTCT+AGG - Chr3:11167581-11167600 None:intergenic 30.0%
TGTTAAAGAAGACTATCTTG+TGG + Chr3:11166840-11166859 MsG0380012122.01.T01:intron 30.0%
TTAGATTTCACTTCAGTTTG+TGG - Chr3:11166461-11166480 None:intergenic 30.0%
TTATCTGTGTACTTTAGTGT+CGG + Chr3:11168818-11168837 MsG0380012122.01.T01:intron 30.0%
TTCCTTTGGATATTCTAACA+CGG + Chr3:11168141-11168160 MsG0380012122.01.T01:intron 30.0%
TTCTACTGATGTATTTCTTG+GGG - Chr3:11165443-11165462 None:intergenic 30.0%
TTGGAACTTGTGAAAAATTC+TGG + Chr3:11168917-11168936 MsG0380012122.01.T01:intron 30.0%
TTGTTACAAAAGCAGCAAAA+GGG + Chr3:11165567-11165586 MsG0380012122.01.T01:intron 30.0%
TTTGAAGAGAAGGTTGAAAA+GGG - Chr3:11166706-11166725 None:intergenic 30.0%
! ACACGTTACTTTCATGAATT+TGG + Chr3:11169199-11169218 MsG0380012122.01.T01:intron 30.0%
! AGTCATTGTAGTCTTTGAAA+TGG - Chr3:11166321-11166340 None:intergenic 30.0%
! ATTTTTATTAATAGGGGGAG+GGG + Chr3:11168094-11168113 MsG0380012122.01.T01:intron 30.0%
! GATACTCAATTGAGGATTTT+TGG - Chr3:11169250-11169269 None:intergenic 30.0%
! GATTTTTATTAATAGGGGGA+GGG + Chr3:11168093-11168112 MsG0380012122.01.T01:intron 30.0%
! GCACAAGATCTTCATATTTT+TGG + Chr3:11165720-11165739 MsG0380012122.01.T01:intron 30.0%
! GCACATTTCTATTGATAGTA+TGG + Chr3:11169709-11169728 MsG0380012122.01.T01:intron 30.0%
! GGTATAATTGTAGCCTATTT+TGG + Chr3:11170977-11170996 MsG0380012122.01.T01:three_prime_UTR 30.0%
! TGAAATAATTGGTAGTTCTG+AGG - Chr3:11169626-11169645 None:intergenic 30.0%
! TGAAGGCTTAAATACAGTTT+TGG - Chr3:11169361-11169380 None:intergenic 30.0%
! TGATTTTTATTAATAGGGGG+AGG + Chr3:11168092-11168111 MsG0380012122.01.T01:intron 30.0%
! TGGAAATTTTGCCTTTATTG+CGG + Chr3:11170409-11170428 MsG0380012122.01.T01:intron 30.0%
! TGGATCTATTATGTTACTTC+AGG - Chr3:11168966-11168985 None:intergenic 30.0%
! TGTAGTTTTCTATTATGCAC+TGG - Chr3:11168747-11168766 None:intergenic 30.0%
! TTAACATGTTTTCCTTTAGG+TGG - Chr3:11166826-11166845 None:intergenic 30.0%
! TTGATGTATTTCAGGTAAGA+GGG + Chr3:11170783-11170802 MsG0380012122.01.T01:intron 30.0%
! TTTGATGTATTTCAGGTAAG+AGG + Chr3:11170782-11170801 MsG0380012122.01.T01:intron 30.0%
!! AAGGAGTTTTATCCATTTTC+TGG - Chr3:11167316-11167335 None:intergenic 30.0%
!! CTCTACAAAACTGACTTTTA+AGG + Chr3:11168427-11168446 MsG0380012122.01.T01:intron 30.0%
!! TTTCTATTATGCACTGGTTA+AGG - Chr3:11168741-11168760 None:intergenic 30.0%
!! TTTTGAAGAGAAGGTTGAAA+AGG - Chr3:11166707-11166726 None:intergenic 30.0%
!!! AAAACTGACTTTTAAGGTGA+GGG + Chr3:11168433-11168452 MsG0380012122.01.T01:intron 30.0%
!!! AAAGAGGGTTTTGAATTGAA+GGG - Chr3:11166575-11166594 None:intergenic 30.0%
!!! ATAGCATCTTTTTTTGGATC+AGG - Chr3:11170833-11170852 None:intergenic 30.0%
!!! TGGTTTTGTAAGGTTAAGTT+AGG + Chr3:11170448-11170467 MsG0380012122.01.T01:intron 30.0%
AAACACACAGTAACTGTAAC+TGG + Chr3:11166480-11166499 MsG0380012122.01.T01:intron 35.0%
AACAAAGATGAAGCCAATCT+TGG + Chr3:11168542-11168561 MsG0380012122.01.T01:intron 35.0%
AACCTAATGTTGCAATTAGG+CGG - Chr3:11170114-11170133 None:intergenic 35.0%
AACTCACAACCATAACAACT+AGG - Chr3:11169072-11169091 None:intergenic 35.0%
AATGGCTCAAGAACTTGAAA+TGG + Chr3:11167077-11167096 MsG0380012122.01.T01:CDS 35.0%
ACCATAACAACTAGGACTAA+TGG - Chr3:11169064-11169083 None:intergenic 35.0%
AGAAATTCAAGAGCTTGTGA+AGG + Chr3:11166993-11167012 MsG0380012122.01.T01:CDS 35.0%
AGATGATTTGATATGTCTGG+TGG + Chr3:11165385-11165404 MsG0380012122.01.T01:intron 35.0%
ATACTCAACTTAGTGGGAAA+AGG + Chr3:11168577-11168596 MsG0380012122.01.T01:intron 35.0%
ATCCAAAGGAACAATTTGCA+TGG - Chr3:11168132-11168151 None:intergenic 35.0%
ATCTGTTAAGAGTCTCACAT+TGG - Chr3:11168495-11168514 None:intergenic 35.0%
ATGATATCTTGGAGAGCTTA+TGG + Chr3:11167405-11167424 MsG0380012122.01.T01:intron 35.0%
ATTACCCAGGCCATATATAT+AGG - Chr3:11170204-11170223 None:intergenic 35.0%
ATTGCCTATATATATGGCCT+GGG + Chr3:11170197-11170216 MsG0380012122.01.T01:intron 35.0%
ATTGTTGAAGTCAGTGGATA+TGG - Chr3:11166785-11166804 None:intergenic 35.0%
CAAGAACTTGAAATGGTATG+AGG + Chr3:11167084-11167103 MsG0380012122.01.T01:intron 35.0%
CATTTGATGAACTGAACTCA+AGG + Chr3:11169546-11169565 MsG0380012122.01.T01:intron 35.0%
CCTTACAAAACCAACTTGTA+AGG - Chr3:11170441-11170460 None:intergenic 35.0%
CGTGATGATTATCAATGAGT+TGG + Chr3:11167838-11167857 MsG0380012122.01.T01:intron 35.0%
CTTCAATTCTGTCCCAAAAT+AGG - Chr3:11170993-11171012 None:intergenic 35.0%
CTTGTTACAAAAGCAGCAAA+AGG + Chr3:11165566-11165585 MsG0380012122.01.T01:intron 35.0%
CTTTCTATTGTTGAAGTCAG+TGG - Chr3:11166791-11166810 None:intergenic 35.0%
GAAATTCAAGAGCTTGTGAA+GGG + Chr3:11166994-11167013 MsG0380012122.01.T01:CDS 35.0%
GAACGAATATTCAATATGCC+TGG - Chr3:11168986-11169005 None:intergenic 35.0%
GACTCACATTCATGATAAGT+GGG + Chr3:11168639-11168658 MsG0380012122.01.T01:intron 35.0%
GCCATATATATAGGCAATGT+GGG - Chr3:11170195-11170214 None:intergenic 35.0%
GGACTAATAAAGAATAGGGT+AGG - Chr3:11170812-11170831 None:intergenic 35.0%
GTCTCACATTGGATGATATA+AGG - Chr3:11168484-11168503 None:intergenic 35.0%
GTTTATAAAGTTTAGGCAGC+CGG + Chr3:11170224-11170243 MsG0380012122.01.T01:intron 35.0%
TACATGAGCTTGAAAATACG+AGG + Chr3:11168026-11168045 MsG0380012122.01.T01:intron 35.0%
TACTCATCATCTGACATAGT+TGG + Chr3:11170926-11170945 MsG0380012122.01.T01:three_prime_UTR 35.0%
TAGAACTAGATAGACCTCTT+TGG - Chr3:11166528-11166547 None:intergenic 35.0%
TATACCAAACAGCATCTTGT+AGG - Chr3:11170963-11170982 None:intergenic 35.0%
TATCTGTGTACTTTAGTGTC+GGG + Chr3:11168819-11168838 MsG0380012122.01.T01:intron 35.0%
TCCATTAGTCCTAGTTGTTA+TGG + Chr3:11169060-11169079 MsG0380012122.01.T01:intron 35.0%
TCCCACATTGCCTATATATA+TGG + Chr3:11170191-11170210 MsG0380012122.01.T01:intron 35.0%
TGACTCACATTCATGATAAG+TGG + Chr3:11168638-11168657 MsG0380012122.01.T01:intron 35.0%
TGATGTGTTGAAGAAGAAGA+GGG - Chr3:11166745-11166764 None:intergenic 35.0%
TTGATGTGTTGAAGAAGAAG+AGG - Chr3:11166746-11166765 None:intergenic 35.0%
TTGTGGTTTGAATGCATAGT+TGG - Chr3:11166444-11166463 None:intergenic 35.0%
! AGTTTCTGGATACTCAATTG+AGG - Chr3:11169258-11169277 None:intergenic 35.0%
! GAGCAATGGTTAAGCATTTT+CGG - Chr3:11167128-11167147 None:intergenic 35.0%
! GCATTGATACTCAACTTAGT+GGG + Chr3:11168571-11168590 MsG0380012122.01.T01:intron 35.0%
! TGCATTGATACTCAACTTAG+TGG + Chr3:11168570-11168589 MsG0380012122.01.T01:intron 35.0%
! TGCTAGTTTGGTTTACTTCT+AGG - Chr3:11167546-11167565 None:intergenic 35.0%
! TTTTTATTAATAGGGGGAGG+GGG + Chr3:11168095-11168114 MsG0380012122.01.T01:intron 35.0%
!! AAAAAAGGCACCTGAAACAT+TGG + Chr3:11165507-11165526 MsG0380012122.01.T01:intron 35.0%
!! AGAGTTGATAGTTTGTGATG+TGG - Chr3:11166679-11166698 None:intergenic 35.0%
!! CAGTTTTGTAGAGTTACGTT+AGG - Chr3:11168420-11168439 None:intergenic 35.0%
!! TCTGTCCTAGATTTGTTGAT+CGG + Chr3:11170499-11170518 MsG0380012122.01.T01:intron 35.0%
!! TTATTGATTTCTACGCGACA+TGG + Chr3:11167037-11167056 MsG0380012122.01.T01:CDS 35.0%
!!! AAAGAGTGAGTTTTTGAGTG+AGG - Chr3:11166604-11166623 None:intergenic 35.0%
!!! AAGAGGGTTTTGAATTGAAG+GGG - Chr3:11166574-11166593 None:intergenic 35.0%
!!! CAAAACTGACTTTTAAGGTG+AGG + Chr3:11168432-11168451 MsG0380012122.01.T01:intron 35.0%
!!! CCTTACAAGTTGGTTTTGTA+AGG + Chr3:11170438-11170457 MsG0380012122.01.T01:intron 35.0%
!!! CTTTTGCTGCTTTTGTAACA+AGG - Chr3:11165568-11165587 None:intergenic 35.0%
!!! GAAAGAGGGTTTTGAATTGA+AGG - Chr3:11166576-11166595 None:intergenic 35.0%
!!! TTGGGGCTTAAGTTAGTTTT+AGG - Chr3:11165426-11165445 None:intergenic 35.0%
AAAATGAGCATACAAGTGGG+AGG - Chr3:11168251-11168270 None:intergenic 40.0%
AAAGCAGCAAAAGGGAAGAA+TGG + Chr3:11165575-11165594 MsG0380012122.01.T01:intron 40.0%
AACTTAGTGGGAAAAGGCTT+TGG + Chr3:11168583-11168602 MsG0380012122.01.T01:intron 40.0%
ACTAGATAGACCTCTTTGGT+TGG - Chr3:11166524-11166543 None:intergenic 40.0%
AGATCCTACAAGATGCTGTT+TGG + Chr3:11170956-11170975 MsG0380012122.01.T01:three_prime_UTR 40.0%
ATACATGTCAGTGTCATGTC+TGG - Chr3:11170014-11170033 None:intergenic 40.0%
ATCAACAATTAGGTGGCTAG+GGG - Chr3:11170331-11170350 None:intergenic 40.0%
CATCAACAATTAGGTGGCTA+GGG - Chr3:11170332-11170351 None:intergenic 40.0%
CATCTTTGTTGCATGCTAAG+AGG - Chr3:11168532-11168551 None:intergenic 40.0%
CATTGCCTATATATATGGCC+TGG + Chr3:11170196-11170215 MsG0380012122.01.T01:intron 40.0%
GAAAATACGAGGAGAGTGAA+AGG + Chr3:11168037-11168056 MsG0380012122.01.T01:intron 40.0%
GAAAGACAAACCAACCAAAG+AGG + Chr3:11166511-11166530 MsG0380012122.01.T01:intron 40.0%
GACCGTGTTAGAATATCCAA+AGG - Chr3:11168146-11168165 None:intergenic 40.0%
GCACAACCCAAATTCAAAGA+TGG + Chr3:11170470-11170489 MsG0380012122.01.T01:intron 40.0%
GGAAACCGATCAACAAATCT+AGG - Chr3:11170507-11170526 None:intergenic 40.0%
GGCAACCTAATGTTGCAATT+AGG - Chr3:11170117-11170136 None:intergenic 40.0%
GGCATCTGTTACCTTTCAAA+CGG - Chr3:11168230-11168249 None:intergenic 40.0%
GGCCATATATATAGGCAATG+TGG - Chr3:11170196-11170215 None:intergenic 40.0%
GTTCATTGTAGACATAGAGG+AGG + Chr3:11165234-11165253 MsG0380012122.01.T01:CDS 40.0%
TAAGGTGAAGACCGCAATAA+AGG - Chr3:11170423-11170442 None:intergenic 40.0%
TAGGCTCATCAACAATTAGG+TGG - Chr3:11170338-11170357 None:intergenic 40.0%
TCATCAACAATTAGGTGGCT+AGG - Chr3:11170333-11170352 None:intergenic 40.0%
TCCAACACCTTCATTGTGTT+GGG + Chr3:11170149-11170168 MsG0380012122.01.T01:intron 40.0%
TCTCTATGCAGAAGATAGCA+TGG + Chr3:11167959-11167978 MsG0380012122.01.T01:intron 40.0%
TCTTGAGCCATTAAGATGCA+TGG - Chr3:11167069-11167088 None:intergenic 40.0%
TGAGGTCGACATATGTTGTA+GGG + Chr3:11171078-11171097 MsG0380012122.01.T01:three_prime_UTR 40.0%
TGAGTGAGGAAAGAGAAAGA+GGG - Chr3:11166590-11166609 None:intergenic 40.0%
TGCAATGAAGGCAACACAAA+TGG - Chr3:11170627-11170646 None:intergenic 40.0%
TTAGGCCTAATCCACGTTAT+AGG - Chr3:11168402-11168421 None:intergenic 40.0%
TTCATTGTGTTGGGTGTGAA+GGG + Chr3:11170158-11170177 MsG0380012122.01.T01:intron 40.0%
TTGAGGTCGACATATGTTGT+AGG + Chr3:11171077-11171096 MsG0380012122.01.T01:three_prime_UTR 40.0%
TTGAGTGAGGAAAGAGAAAG+AGG - Chr3:11166591-11166610 None:intergenic 40.0%
TTGAGTTAAGCTCAACCCAA+TGG - Chr3:11168196-11168215 None:intergenic 40.0%
TTTAAACCAAAACACGCGAC+AGG - Chr3:11167150-11167169 None:intergenic 40.0%
! AAGTCTTTTCCCACTAAGTG+GGG - Chr3:11167919-11167938 None:intergenic 40.0%
! ACCTTTCAAACGGATTTCGT+AGG - Chr3:11168220-11168239 None:intergenic 40.0%
! CAAGTCTTTTCCCACTAAGT+GGG - Chr3:11167920-11167939 None:intergenic 40.0%
! CATTTGAAGCGTTACATGAG+TGG + Chr3:11168327-11168346 MsG0380012122.01.T01:intron 40.0%
! CCTTTCAAACGGATTTCGTA+GGG - Chr3:11168219-11168238 None:intergenic 40.0%
! TTGGCCTCTTTGAAAAGCTT+TGG + Chr3:11165651-11165670 MsG0380012122.01.T01:intron 40.0%
! TTTGTGATGTGGAAGAGTGT+AGG - Chr3:11166668-11166687 None:intergenic 40.0%
!! CTAGGCGAATCTTTGTTGTT+TGG - Chr3:11167528-11167547 None:intergenic 40.0%
!!! AGAGAGAGGTTTTGAAGAGA+AGG - Chr3:11166716-11166735 None:intergenic 40.0%
AAGTACCAGAAAGACTGGCA+CGG - Chr3:11165633-11165652 None:intergenic 45.0%
AAGTCAGTGGATATGGTGAG+AGG - Chr3:11166778-11166797 None:intergenic 45.0%
AATGTCTAGTCCTAGGCATG+AGG - Chr3:11168311-11168330 None:intergenic 45.0%
AATGTTGCAATTAGGCGGCT+AGG - Chr3:11170109-11170128 None:intergenic 45.0%
AGCCGCCTAATTGCAACATT+AGG + Chr3:11170109-11170128 MsG0380012122.01.T01:intron 45.0%
ATGTCTAGTCCTAGGCATGA+GGG - Chr3:11168310-11168329 None:intergenic 45.0%
ATGTTCCACAAGAGAACCCA+TGG + Chr3:11165462-11165481 MsG0380012122.01.T01:intron 45.0%
ATGTTGCAATTAGGCGGCTA+GGG - Chr3:11170108-11170127 None:intergenic 45.0%
ATTTCTGACCTACAAGCCCA+TGG - Chr3:11165482-11165501 None:intergenic 45.0%
CATTGTAGACATAGAGGAGG+AGG + Chr3:11165237-11165256 MsG0380012122.01.T01:CDS 45.0%
CCACTTAGTGGGAAAAGACT+TGG + Chr3:11167918-11167937 MsG0380012122.01.T01:intron 45.0%
CCCTACGAAATCCGTTTGAA+AGG + Chr3:11168216-11168235 MsG0380012122.01.T01:intron 45.0%
CGCATCCTATAACGTGGATT+AGG + Chr3:11168394-11168413 MsG0380012122.01.T01:intron 45.0%
CGCTTCAAATGTCTAGTCCT+AGG - Chr3:11168318-11168337 None:intergenic 45.0%
CGGTAGGCTCATCAACAATT+AGG - Chr3:11170341-11170360 None:intergenic 45.0%
CTCCAACACCTTCATTGTGT+TGG + Chr3:11170148-11170167 MsG0380012122.01.T01:intron 45.0%
CTGCTTTGCAAACCACCTAA+AGG + Chr3:11166811-11166830 MsG0380012122.01.T01:intron 45.0%
CTTCACACCCAACACAATGA+AGG - Chr3:11170159-11170178 None:intergenic 45.0%
CTTCATTGTGTTGGGTGTGA+AGG + Chr3:11170157-11170176 MsG0380012122.01.T01:intron 45.0%
GATATTCTAACACGGTCCCT+TGG + Chr3:11168149-11168168 MsG0380012122.01.T01:intron 45.0%
GGAAGACTAATCTGAACGCA+GGG + Chr3:11166388-11166407 MsG0380012122.01.T01:intron 45.0%
GGCCATGCAAATTGTTCCTT+TGG + Chr3:11168127-11168146 MsG0380012122.01.T01:intron 45.0%
GTAGGGGTAAACCGGTTATA+TGG + Chr3:11168680-11168699 MsG0380012122.01.T01:intron 45.0%
GTCAGAGTCTTGCATTAGTC+AGG + Chr3:11167803-11167822 MsG0380012122.01.T01:intron 45.0%
GTGGATATGGTGAGAGGATA+AGG - Chr3:11166772-11166791 None:intergenic 45.0%
GTGTGGTCCATGCATCTTAA+TGG + Chr3:11167059-11167078 MsG0380012122.01.T01:CDS 45.0%
TAATCTGAACGCAGGGATGT+CGG + Chr3:11166395-11166414 MsG0380012122.01.T01:intron 45.0%
TCAAACACACCCATCATGCT+CGG - Chr3:11170282-11170301 None:intergenic 45.0%
TCAGCTCCAAATCCCTTCTT+TGG + Chr3:11165749-11165768 MsG0380012122.01.T01:intron 45.0%
TCTGAACGCATCCTATAACG+TGG + Chr3:11168388-11168407 MsG0380012122.01.T01:intron 45.0%
TGAGTCTTGGAGCCAAAGAA+GGG - Chr3:11165764-11165783 None:intergenic 45.0%
TGGAAGACTAATCTGAACGC+AGG + Chr3:11166387-11166406 MsG0380012122.01.T01:intron 45.0%
TGGAAGAGAGCCATTGAAGA+TGG - Chr3:11166643-11166662 None:intergenic 45.0%
TGTTCCACAAGAGAACCCAT+GGG + Chr3:11165463-11165482 MsG0380012122.01.T01:intron 45.0%
TTGAGTCTTGGAGCCAAAGA+AGG - Chr3:11165765-11165784 None:intergenic 45.0%
TTGGAGCCAAAGAAGGGATT+TGG - Chr3:11165758-11165777 None:intergenic 45.0%
TTTCTGACCTACAAGCCCAT+GGG - Chr3:11165481-11165500 None:intergenic 45.0%
! ACCCAACACAATGAAGGTGT+TGG - Chr3:11170153-11170172 None:intergenic 45.0%
! CCAAGTCTTTTCCCACTAAG+TGG - Chr3:11167921-11167940 None:intergenic 45.0%
! GATGTGGAAGAGTGTAGGAA+TGG - Chr3:11166663-11166682 None:intergenic 45.0%
! GCCTCCAAAGCTTTTCAAAG+AGG - Chr3:11165658-11165677 None:intergenic 45.0%
! GCCTCTTTGAAAAGCTTTGG+AGG + Chr3:11165654-11165673 MsG0380012122.01.T01:intron 45.0%
! GTCGAGCCTTGTAATTCCAA+GGG - Chr3:11168168-11168187 None:intergenic 45.0%
! TGTCGAGCCTTGTAATTCCA+AGG - Chr3:11168169-11168188 None:intergenic 45.0%
!! CAACACAATGAAGGTGTTGG+AGG - Chr3:11170150-11170169 None:intergenic 45.0%
!! GAGGGTATTTGCTCCAATGT+TGG + Chr3:11169742-11169761 MsG0380012122.01.T01:intron 45.0%
!!! TGCTGCTTTTGTAACAAGGC+TGG - Chr3:11165564-11165583 None:intergenic 45.0%
AAAACACGCGACAGGAGCAA+TGG - Chr3:11167142-11167161 None:intergenic 50.0%
AACAATTAGGTGGCTAGGGG+AGG - Chr3:11170328-11170347 None:intergenic 50.0%
AAGAGAACCCATGGGCTTGT+AGG + Chr3:11165471-11165490 MsG0380012122.01.T01:intron 50.0%
AAGGCTCGACAGTCACCATT+GGG + Chr3:11168178-11168197 MsG0380012122.01.T01:intron 50.0%
AATCTGAACGCAGGGATGTC+GGG + Chr3:11166396-11166415 MsG0380012122.01.T01:intron 50.0%
ACACAAATGGCGCAACTAGG+TGG - Chr3:11170614-11170633 None:intergenic 50.0%
AGGCACCTGAAACATTGGCA+CGG + Chr3:11165512-11165531 MsG0380012122.01.T01:intron 50.0%
AGGCCAAGTACCAGAAAGAC+TGG - Chr3:11165638-11165657 None:intergenic 50.0%
ATCCACGCTTCAGGCTCATA+GGG + Chr3:11170365-11170384 MsG0380012122.01.T01:intron 50.0%
CAAACACACCCATCATGCTC+GGG - Chr3:11170281-11170300 None:intergenic 50.0%
CAACACACCCTATCGTGCTT+GGG - Chr3:11170559-11170578 None:intergenic 50.0%
CACGGTCCCTTGGAATTACA+AGG + Chr3:11168159-11168178 MsG0380012122.01.T01:intron 50.0%
GAAGAAGAATGAGGAGGAGG+AGG + Chr3:11165285-11165304 MsG0380012122.01.T01:CDS 50.0%
GAAGAGGGAGAAACAGAGAG+AGG - Chr3:11166730-11166749 None:intergenic 50.0%
GATTTCTACGCGACATGGTG+TGG + Chr3:11167042-11167061 MsG0380012122.01.T01:CDS 50.0%
GCAACACAAATGGCGCAACT+AGG - Chr3:11170617-11170636 None:intergenic 50.0%
GCGGTCTTCACCTTACAAGT+TGG + Chr3:11170428-11170447 MsG0380012122.01.T01:intron 50.0%
GGAGAAGAAGAATGAGGAGG+AGG + Chr3:11165282-11165301 MsG0380012122.01.T01:CDS 50.0%
GGAGGAGAAGAAGAATGAGG+AGG + Chr3:11165279-11165298 MsG0380012122.01.T01:CDS 50.0%
GGAGGAGGAGAAGAAGAATG+AGG + Chr3:11165276-11165295 MsG0380012122.01.T01:CDS 50.0%
TCCCACACTTCAGGCTCATA+GGG + Chr3:11170255-11170274 MsG0380012122.01.T01:intron 50.0%
TCTTACCAACCCTCATGCCT+AGG + Chr3:11168298-11168317 MsG0380012122.01.T01:intron 50.0%
TGAATTTGCACGCGACATGC+AGG + Chr3:11169881-11169900 MsG0380012122.01.T01:CDS 50.0%
TGTAGACATAGAGGAGGAGG+AGG + Chr3:11165240-11165259 MsG0380012122.01.T01:CDS 50.0%
TGTGTAGCGAGCTGCAATGA+AGG - Chr3:11170639-11170658 None:intergenic 50.0%
TGTTGCAATTAGGCGGCTAG+GGG - Chr3:11170107-11170126 None:intergenic 50.0%
! AAGGGATTTGGAGCTGACTG+AGG - Chr3:11165746-11165765 None:intergenic 50.0%
! ATTGCTCCTGTCGCGTGTTT+TGG + Chr3:11167141-11167160 MsG0380012122.01.T01:intron 50.0%
! CTTTTCCCACTAAGTGGGGT+CGG - Chr3:11167915-11167934 None:intergenic 50.0%
! GTCCACGCTTTAGGCTCATA+GGG + Chr3:11170533-11170552 MsG0380012122.01.T01:intron 50.0%
! GTGCCAGTCTTTCTGGTACT+TGG + Chr3:11165632-11165651 MsG0380012122.01.T01:intron 50.0%
!! AGTGTCGGGTTTGCTGTTCT+AGG + Chr3:11168833-11168852 MsG0380012122.01.T01:intron 50.0%
!! CACAATGAAGGTGTTGGAGG+CGG - Chr3:11170147-11170166 None:intergenic 50.0%
ACTAAGTGGGGTCGGCTACA+TGG - Chr3:11167907-11167926 None:intergenic 55.0%
AGACACTTGAGCGCAGCGTA+GGG + Chr3:11168663-11168682 MsG0380012122.01.T01:intron 55.0%
AGACATAGAGGAGGAGGAGG+AGG + Chr3:11165243-11165262 MsG0380012122.01.T01:CDS 55.0%
AGCCTAAAGCGTGGACGATG+GGG - Chr3:11170529-11170548 None:intergenic 55.0%
AGCCTGAAGCGTGGATGATG+CGG - Chr3:11170361-11170380 None:intergenic 55.0%
AGGGAAGAATGGCTCGAGCA+TGG + Chr3:11165586-11165605 MsG0380012122.01.T01:intron 55.0%
AGTTTAGGCAGCCGGCATTG+TGG + Chr3:11170232-11170251 MsG0380012122.01.T01:intron 55.0%
ATCTGAACGCAGGGATGTCG+GGG + Chr3:11166397-11166416 MsG0380012122.01.T01:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG + Chr3:11167906-11167925 MsG0380012122.01.T01:intron 55.0%
CAACACACCCCATCATGCTC+GGG - Chr3:11170391-11170410 None:intergenic 55.0%
CAAGCCCATGGGTTCTCTTG+TGG - Chr3:11165470-11165489 None:intergenic 55.0%
CAAGGCTCGACAGTCACCAT+TGG + Chr3:11168177-11168196 MsG0380012122.01.T01:intron 55.0%
CATAGGGCCCAAGCACGATA+GGG + Chr3:11170549-11170568 MsG0380012122.01.T01:intron 55.0%
CATCCACGCTTCAGGCTCAT+AGG + Chr3:11170364-11170383 MsG0380012122.01.T01:intron 55.0%
CCAACACACCCCATCATGCT+CGG - Chr3:11170392-11170411 None:intergenic 55.0%
CCAACACACCCTATCGTGCT+TGG - Chr3:11170560-11170579 None:intergenic 55.0%
CCAAGCACGATAGGGTGTGT+TGG + Chr3:11170557-11170576 MsG0380012122.01.T01:intron 55.0%
CGCAACTAGGTGGCTATAGG+AGG - Chr3:11170604-11170623 None:intergenic 55.0%
CTAGGGGAGGATTGCAGTGA+AGG - Chr3:11170091-11170110 None:intergenic 55.0%
CTAGTCCTAGGCATGAGGGT+TGG - Chr3:11168306-11168325 None:intergenic 55.0%
GAAGAATGAGGAGGAGGAGG+AGG + Chr3:11165288-11165307 MsG0380012122.01.T01:CDS 55.0%
GAAGTGTGGGACCACAATGC+CGG - Chr3:11170246-11170265 None:intergenic 55.0%
GACCACGCCATTGCTAGACA+CGG + Chr3:11165680-11165699 MsG0380012122.01.T01:intron 55.0%
GAGCCTAAAGCGTGGACGAT+GGG - Chr3:11170530-11170549 None:intergenic 55.0%
GCATTGTGGTCCCACACTTC+AGG + Chr3:11170246-11170265 MsG0380012122.01.T01:intron 55.0%
GCCCTATGAGCCTGAAGTGT+GGG - Chr3:11170259-11170278 None:intergenic 55.0%
GTCCCACACTTCAGGCTCAT+AGG + Chr3:11170254-11170273 MsG0380012122.01.T01:intron 55.0%
TACCGCATCATCCACGCTTC+AGG + Chr3:11170356-11170375 MsG0380012122.01.T01:intron 55.0%
TAGACACTTGAGCGCAGCGT+AGG + Chr3:11168662-11168681 MsG0380012122.01.T01:intron 55.0%
TCATAGGGCCCAAGCACGAT+AGG + Chr3:11170548-11170567 MsG0380012122.01.T01:intron 55.0%
TCATAGGGCCCGAGCATGAT+GGG + Chr3:11170270-11170289 MsG0380012122.01.T01:intron 55.0%
TCTGACGAGCCACTCGCTAT+CGG - Chr3:11168356-11168375 None:intergenic 55.0%
TGAAGCGTGGATGATGCGGT+AGG - Chr3:11170357-11170376 None:intergenic 55.0%
TGAGCCTAAAGCGTGGACGA+TGG - Chr3:11170531-11170550 None:intergenic 55.0%
TGGCGCAACTAGGTGGCTAT+AGG - Chr3:11170607-11170626 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + Chr3:11167907-11167926 MsG0380012122.01.T01:intron 55.0%
! CGTCCACGCTTTAGGCTCAT+AGG + Chr3:11170532-11170551 MsG0380012122.01.T01:intron 55.0%
! GGTGTTGGAGGCGGCAATAA+AGG - Chr3:11170138-11170157 None:intergenic 55.0%
AGCCGTGTCTAGCAATGGCG+TGG - Chr3:11165685-11165704 None:intergenic 60.0%
AGCGCAGCGTAGGGGTAAAC+CGG + Chr3:11168672-11168691 MsG0380012122.01.T01:intron 60.0%
CACGGCCGTGCCAATGTTTC+AGG - Chr3:11165520-11165539 None:intergenic 60.0%
CATAGAGGAGGAGGAGGAGG+AGG + Chr3:11165246-11165265 MsG0380012122.01.T01:CDS 60.0%
CATAGGGCCCGAGCATGATG+GGG + Chr3:11170271-11170290 MsG0380012122.01.T01:intron 60.0%
CTCATAGGGCCCGAGCATGA+TGG + Chr3:11170269-11170288 MsG0380012122.01.T01:intron 60.0%
CTGACGAGCCACTCGCTATC+GGG - Chr3:11168355-11168374 None:intergenic 60.0%
GAATGAGGAGGAGGAGGAGG+AGG + Chr3:11165291-11165310 MsG0380012122.01.T01:CDS 60.0%
GACACTTGAGCGCAGCGTAG+GGG + Chr3:11168664-11168683 MsG0380012122.01.T01:intron 60.0%
GCCTAAAGCGTGGACGATGG+GGG - Chr3:11170528-11170547 None:intergenic 60.0%
GCGAGTGGCTCGTCAGATCT+TGG + Chr3:11168359-11168378 MsG0380012122.01.T01:intron 60.0%
GGCACAGCCGTGTCTAGCAA+TGG - Chr3:11165690-11165709 None:intergenic 60.0%
GGCCCTATGAGCCTAAAGCG+TGG - Chr3:11170538-11170557 None:intergenic 60.0%
GGCCCTATGAGCCTGAAGTG+TGG - Chr3:11170260-11170279 None:intergenic 60.0%
GGGGAGGATTGCAGTGAAGG+AGG - Chr3:11170088-11170107 None:intergenic 60.0%
TCCCCCATCGTCCACGCTTT+AGG + Chr3:11170524-11170543 MsG0380012122.01.T01:intron 60.0%
TGACGAGCCACTCGCTATCG+GGG - Chr3:11168354-11168373 None:intergenic 60.0%
TGCAATTAGGCGGCTAGGGG+AGG - Chr3:11170104-11170123 None:intergenic 60.0%
! CCGAGCATGATGGGGTGTGT+TGG + Chr3:11170389-11170408 MsG0380012122.01.T01:intron 60.0%
ACGGGCCGTGCCAGTCTTTC+TGG + Chr3:11165625-11165644 MsG0380012122.01.T01:intron 65.0%
AGAGGAGGAGGAGGAGGAGG+AGG + Chr3:11165249-11165268 MsG0380012122.01.T01:CDS 65.0%
AGGGGGAGGGGGATGCACTT+AGG + Chr3:11168106-11168125 MsG0380012122.01.T01:intron 65.0%
GACCCATGCCTGTGGTGGCA+CGG - Chr3:11165538-11165557 None:intergenic 65.0%
GACGAGCCACTCGCTATCGG+GGG - Chr3:11168353-11168372 None:intergenic 65.0%
GGCCCTATGAGCCTGAAGCG+TGG - Chr3:11170370-11170389 None:intergenic 65.0%
GAGCATGGCCGTGCCACCAC+AGG + Chr3:11165601-11165620 MsG0380012122.01.T01:intron 70.0%
GAGTGGCCCCCGATAGCGAG+TGG + Chr3:11168344-11168363 MsG0380012122.01.T01:intron 70.0%
GCTGGCACGACCCATGCCTG+TGG - Chr3:11165546-11165565 None:intergenic 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG + Chr3:11165252-11165271 MsG0380012122.01.T01:CDS 70.0%
GGCACGACCCATGCCTGTGG+TGG - Chr3:11165543-11165562 None:intergenic 70.0%
GGCCGTGCCACCACAGGCAT+GGG + Chr3:11165533-11165552 MsG0380012122.01.T01:intron 70.0%
TGGCCGTGCCACCACAGGCA+CGG + Chr3:11165606-11165625 MsG0380012122.01.T01:intron 70.0%
ACTGGCACGGCCCGTGCCTG+TGG - Chr3:11165620-11165639 None:intergenic 75.0%
CGGCCGTGCCACCACAGGCA+TGG + Chr3:11165532-11165551 MsG0380012122.01.T01:intron 75.0%
GGCCCGTGCCTGTGGTGGCA+CGG - Chr3:11165612-11165631 None:intergenic 75.0%
GGCCGTGCCACCACAGGCAC+GGG + Chr3:11165607-11165626 MsG0380012122.01.T01:intron 75.0%
TGGCACGGCCGTGCCACCAC+AGG + Chr3:11165527-11165546 MsG0380012122.01.T01:intron 75.0%
! GGCACGGCCCGTGCCTGTGG+TGG - Chr3:11165617-11165636 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr3 gene 11165232 11171181 11165232 ID=MsG0380012122.01;Name=MsG0380012122.01
Chr3 mRNA 11165232 11171181 11165232 ID=MsG0380012122.01.T01;Parent=MsG0380012122.01;Name=MsG0380012122.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0.66|0.75|0.75|1|1|4|268|133
Chr3 exon 11165232 11165312 11165232 ID=MsG0380012122.01.T01:exon:1872;Parent=MsG0380012122.01.T01
Chr3 exon 11166976 11167098 11166976 ID=MsG0380012122.01.T01:exon:1873;Parent=MsG0380012122.01.T01
Chr3 exon 11169822 11169902 11169822 ID=MsG0380012122.01.T01:exon:1874;Parent=MsG0380012122.01.T01
Chr3 exon 11170797 11171181 11170797 ID=MsG0380012122.01.T01:exon:1875;Parent=MsG0380012122.01.T01
Chr3 CDS 11165232 11165312 11165232 ID=MsG0380012122.01.T01:cds;Parent=MsG0380012122.01.T01
Chr3 CDS 11166976 11167098 11166976 ID=MsG0380012122.01.T01:cds;Parent=MsG0380012122.01.T01
Chr3 CDS 11169822 11169902 11169822 ID=MsG0380012122.01.T01:cds;Parent=MsG0380012122.01.T01
Chr3 CDS 11170797 11170913 11170797 ID=MsG0380012122.01.T01:cds;Parent=MsG0380012122.01.T01
Chr3 three_prime_UTR 11170914 11171181 11170914 ID=MsG0380012122.01.T01:three_prime_utr;Parent=MsG0380012122.01.T01
Gene Sequence

>MsG0380012122.01.T01

ATGTTCATTGTAGACATAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAGAATGAGGAGGAGGAGGAGGAGAAAAAGTTGTCAGCTCAAGAAATTCAAGAGCTTGTGAAGGGAGATAGAAATGTTCCTCTTATTATTGATTTCTACGCGACATGGTGTGGTCCATGCATCTTAATGGCTCAAGAACTTGAAATGCTTGCAGTCGAGTACGAGAACAATGCGATGATTGTTAAAGTTGATACAGATGATGAGTATGAATTTGCACGCGACATGCAGGTAAGAGGGTTGCCTACCCTATTCTTTATTAGTCCTGATCCAAAAAAAGATGCTATTAGAACTGAAGGGCTTATACCAATACAGATGATGAGAGATATCATTGACAAAGAAATGTAA

Protein sequence

>MsG0380012122.01.T01

MFIVDIEEEEEEEEEEEEKKNEEEEEEKKLSAQEIQELVKGDRNVPLIIDFYATWCGPCILMAQELEMLAVEYENNAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPKKDAIRTEGLIPIQMMRDIIDKEM*