AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580030105.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580030105.01.T01 MTR_7g005280 77.519 258 20 7 1 222 1 256 5.42e-129 364
MsG0580030105.01.T01 MTR_8g099750 55.000 200 74 6 1 190 1 194 1.41e-69 213
MsG0580030105.01.T01 MTR_3g098810 52.336 214 83 5 1 196 1 213 1.26e-67 208
MsG0580030105.01.T01 MTR_7g070140 66.871 163 14 2 60 222 12 134 4.36e-67 203
MsG0580030105.01.T01 MTR_3g098810 61.842 152 56 2 1 151 1 151 1.12e-61 191
MsG0580030105.01.T01 MTR_4g081870 53.297 182 70 5 7 177 1 178 1.82e-57 183
MsG0580030105.01.T01 MTR_7g085220 50.568 176 72 3 12 172 5 180 9.80e-57 183
MsG0580030105.01.T01 MTR_2g080010 53.631 179 64 4 1 162 1 177 2.96e-56 182
MsG0580030105.01.T01 MTR_5g041940 57.233 159 54 3 13 161 1 155 4.14e-56 179
MsG0580030105.01.T01 MTR_4g089135 53.933 178 51 4 14 162 14 189 1.87e-55 180
MsG0580030105.01.T01 MTR_2157s0010 55.215 163 57 4 15 162 8 169 3.35e-55 177
MsG0580030105.01.T01 MTR_7g070150 89.474 95 7 2 103 197 1 92 1.23e-54 170
MsG0580030105.01.T01 MTR_7g100990 54.268 164 61 5 7 158 1 162 3.11e-54 176
MsG0580030105.01.T01 MTR_2g093810 53.896 154 59 3 15 158 14 165 3.08e-52 171
MsG0580030105.01.T01 MTR_3g064580 56.604 159 56 3 13 162 4 158 4.71e-52 178
MsG0580030105.01.T01 MTR_3g109340 49.721 179 82 4 4 176 9 185 4.91e-52 172
MsG0580030105.01.T01 MTR_3g088110 51.705 176 71 3 12 178 4 174 8.56e-52 169
MsG0580030105.01.T01 MTR_3g109340 49.444 180 82 4 4 176 9 186 9.68e-52 171
MsG0580030105.01.T01 MTR_1g008740 51.429 175 77 4 12 180 10 182 1.13e-51 171
MsG0580030105.01.T01 MTR_1g008740 51.429 175 77 4 12 180 24 196 1.34e-51 171
MsG0580030105.01.T01 MTR_6g084430 50.898 167 74 3 12 174 2 164 6.65e-51 168
MsG0580030105.01.T01 MTR_2g064090 53.459 159 61 4 13 162 4 158 9.37e-51 168
MsG0580030105.01.T01 MTR_2g062730 50.307 163 71 3 6 161 1 160 2.58e-50 167
MsG0580030105.01.T01 MTR_4g108760 50.581 172 71 5 1 162 1 168 3.70e-50 167
MsG0580030105.01.T01 MTR_4g035590 56.494 154 55 5 15 161 8 156 4.53e-50 166
MsG0580030105.01.T01 MTR_8g076110 51.220 164 68 5 15 171 6 164 6.83e-50 165
MsG0580030105.01.T01 MTR_5g021710 46.277 188 90 4 12 192 5 188 6.84e-50 166
MsG0580030105.01.T01 MTR_2g079990 50.867 173 75 3 11 177 12 180 7.82e-50 166
MsG0580030105.01.T01 MTR_3g435150 50.292 171 72 4 1 162 1 167 1.18e-49 164
MsG0580030105.01.T01 MTR_7g085260 50.000 174 78 4 13 178 15 187 1.39e-49 166
MsG0580030105.01.T01 MTR_4g036030 53.247 154 61 4 15 161 7 156 1.66e-49 165
MsG0580030105.01.T01 MTR_5g076850 53.049 164 65 4 13 168 4 163 2.98e-49 170
MsG0580030105.01.T01 MTR_8g059170 46.330 218 86 7 12 216 11 210 5.34e-49 163
MsG0580030105.01.T01 MTR_5g012080 47.024 168 78 3 14 173 6 170 6.64e-49 163
MsG0580030105.01.T01 MTR_8g094580 45.161 217 93 8 11 216 3 204 7.43e-49 161
MsG0580030105.01.T01 MTR_4g101680 50.617 162 69 3 14 168 6 163 8.22e-49 164
MsG0580030105.01.T01 MTR_6g032770 48.521 169 77 3 8 168 11 177 2.41e-48 163
MsG0580030105.01.T01 MTR_1g069805 44.175 206 107 4 15 215 10 212 3.51e-48 159
MsG0580030105.01.T01 MTR_1g096430 50.318 157 67 3 12 161 4 156 5.11e-48 161
MsG0580030105.01.T01 MTR_3g070030 50.000 174 72 5 5 168 9 177 5.32e-48 161
MsG0580030105.01.T01 MTR_6g012670 48.276 174 71 5 4 162 2 171 7.67e-48 160
MsG0580030105.01.T01 MTR_2g078700 51.572 159 67 3 12 162 20 176 9.36e-48 161
MsG0580030105.01.T01 MTR_6g477900 46.023 176 81 4 13 178 4 175 1.05e-47 157
MsG0580030105.01.T01 MTR_3g096920 49.171 181 76 6 11 182 3 176 1.63e-47 158
MsG0580030105.01.T01 MTR_8g024480 47.059 170 68 3 10 161 10 175 1.49e-46 159
MsG0580030105.01.T01 MTR_2g064470 43.128 211 86 8 12 212 8 194 1.31e-45 154
MsG0580030105.01.T01 MTR_5g090970 44.550 211 91 6 8 204 12 210 1.31e-45 154
MsG0580030105.01.T01 MTR_2g079990 43.781 201 75 3 11 177 12 208 1.72e-45 155
MsG0580030105.01.T01 MTR_8g467490 38.306 248 117 6 1 215 1 245 2.18e-45 155
MsG0580030105.01.T01 MTR_7g097090 51.351 148 66 3 15 159 10 154 2.36e-45 152
MsG0580030105.01.T01 MTR_5g040420 45.604 182 82 4 1 168 1 179 4.59e-45 154
MsG0580030105.01.T01 MTR_5g090970 44.340 212 91 6 8 204 12 211 4.61e-45 152
MsG0580030105.01.T01 MTR_3g116070 53.741 147 62 4 8 150 16 160 8.41e-45 153
MsG0580030105.01.T01 MTR_3g093040 47.468 158 71 3 13 162 106 259 9.59e-45 152
MsG0580030105.01.T01 MTR_5g014300 46.541 159 77 2 11 161 2 160 3.35e-44 151
MsG0580030105.01.T01 MTR_2g068880 39.091 220 112 4 1 202 9 224 3.86e-44 150
MsG0580030105.01.T01 MTR_2g068920 42.541 181 85 3 6 168 13 192 1.63e-43 148
MsG0580030105.01.T01 MTR_7g011130 54.015 137 54 3 9 141 13 144 2.46e-43 149
MsG0580030105.01.T01 MTR_7g011120 48.521 169 66 5 9 161 2 165 2.52e-43 148
MsG0580030105.01.T01 MTR_3g093050 48.447 161 71 3 15 167 22 178 3.05e-43 153
MsG0580030105.01.T01 MTR_5g069030 48.555 173 70 4 14 178 24 185 3.37e-43 154
MsG0580030105.01.T01 MTR_4g098630 47.059 170 77 4 15 176 6 170 3.47e-43 148
MsG0580030105.01.T01 MTR_3g093050 48.447 161 71 3 15 167 22 178 4.44e-43 153
MsG0580030105.01.T01 MTR_6g011860 44.633 177 80 4 1 162 1 174 6.25e-42 146
MsG0580030105.01.T01 MTR_3g096920 54.412 136 54 2 11 143 3 133 1.49e-41 144
MsG0580030105.01.T01 MTR_3g070040 45.882 170 75 3 9 168 2 164 1.73e-41 144
MsG0580030105.01.T01 MTR_3g096140 47.742 155 63 5 18 161 10 157 1.59e-40 140
MsG0580030105.01.T01 MTR_2g086880 44.242 165 80 3 18 178 21 177 1.56e-39 142
MsG0580030105.01.T01 MTR_1g090720 50.617 162 60 4 15 161 42 198 1.58e-39 142
MsG0580030105.01.T01 MTR_3g096140 45.614 171 72 6 18 177 10 170 1.69e-39 139
MsG0580030105.01.T01 MTR_2g086880 44.242 165 80 3 18 178 21 177 1.86e-39 143
MsG0580030105.01.T01 MTR_4g075980 43.636 165 84 5 1 162 4 162 1.36e-37 133
MsG0580030105.01.T01 MTR_1g090723 47.403 154 68 4 18 162 11 160 1.53e-37 138
MsG0580030105.01.T01 MTR_0036s0150 47.712 153 68 4 18 162 8 156 2.42e-37 136
MsG0580030105.01.T01 MTR_8g023840 46.667 150 69 5 15 158 11 155 3.06e-37 134
MsG0580030105.01.T01 MTR_1g090723 47.059 153 69 4 18 162 11 159 3.23e-37 137
MsG0580030105.01.T01 MTR_1g097300 46.452 155 67 4 18 162 22 170 3.83e-37 136
MsG0580030105.01.T01 MTR_1g090723 47.059 153 69 4 18 162 11 159 4.21e-37 137
MsG0580030105.01.T01 MTR_8g063550 44.937 158 71 4 14 161 5 156 1.52e-36 131
MsG0580030105.01.T01 MTR_8g063550 44.937 158 71 4 14 161 5 156 4.95e-36 132
MsG0580030105.01.T01 MTR_8g063550 44.937 158 71 4 14 161 5 156 5.83e-36 131
MsG0580030105.01.T01 MTR_4g134460 45.161 155 77 4 12 162 52 202 6.66e-35 129
MsG0580030105.01.T01 MTR_8g093580 43.671 158 73 4 14 161 5 156 4.34e-34 127
MsG0580030105.01.T01 MTR_4g094302 39.103 156 75 4 15 159 11 157 1.16e-31 114
MsG0580030105.01.T01 MTR_8g023860 40.132 152 80 5 14 159 11 157 7.76e-31 117
MsG0580030105.01.T01 MTR_3g096140 44.681 141 60 5 32 161 3 136 1.14e-30 115
MsG0580030105.01.T01 MTR_4g094302 42.636 129 63 3 15 141 11 130 2.61e-30 110
MsG0580030105.01.T01 MTR_8g094580 42.767 159 70 6 65 216 6 150 1.22e-29 110
MsG0580030105.01.T01 MTR_2g086690 40.491 163 77 6 16 162 5 163 5.45e-29 109
MsG0580030105.01.T01 MTR_8g023930 40.909 154 80 5 15 162 24 172 6.63e-29 113
MsG0580030105.01.T01 MTR_8g023880 38.830 188 84 8 15 181 7 184 1.26e-28 108
MsG0580030105.01.T01 MTR_8g023900 39.623 159 85 5 15 167 12 165 1.29e-28 112
MsG0580030105.01.T01 MTR_8g023900 41.060 151 78 5 17 161 195 340 1.23e-27 109
MsG0580030105.01.T01 MTR_4g052620 40.123 162 80 6 15 162 5 163 2.59e-28 107
MsG0580030105.01.T01 MTR_8g093790 38.509 161 75 6 6 163 1 140 9.99e-27 101
MsG0580030105.01.T01 MTR_7g105170 35.294 170 82 7 15 163 4 166 1.54e-24 97.8
MsG0580030105.01.T01 MTR_7g083370 32.394 142 85 5 10 146 5 140 1.42e-18 79.3
MsG0580030105.01.T01 MTR_7g083360 32.500 160 83 7 10 164 5 144 5.64e-18 78.2
MsG0580030105.01.T01 MTR_3g096400 32.544 169 78 7 13 159 5 159 6.84e-18 79.0
MsG0580030105.01.T01 MTR_7g083330 33.129 163 97 6 13 169 16 172 5.10e-17 76.3
MsG0580030105.01.T01 MTR_1g045470 34.337 166 93 7 23 177 13 173 5.97e-16 75.5
MsG0580030105.01.T01 MTR_4g078875 33.557 149 74 7 15 143 48 191 4.69e-14 69.7
MsG0580030105.01.T01 MTR_2g014680 30.994 171 87 9 15 163 53 214 4.73e-13 67.4
MsG0580030105.01.T01 MTR_2g090735 28.372 215 106 12 15 202 49 242 3.24e-12 64.7
MsG0580030105.01.T01 MTR_4g088245 29.167 168 94 8 15 163 68 229 3.45e-12 64.7
MsG0580030105.01.T01 MTR_8g069160 31.081 148 78 7 15 143 68 210 6.42e-12 63.5
MsG0580030105.01.T01 MTR_8g102240 29.714 175 91 8 15 163 47 215 7.35e-12 64.3
MsG0580030105.01.T01 MTR_8g102240 29.714 175 91 8 15 163 47 215 7.35e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580030105.01.T01 AT5G13180 72.500 160 40 2 7 164 6 163 9.31e-84 249
MsG0580030105.01.T01 AT2G33480 69.512 164 45 2 1 163 1 160 1.11e-81 244
MsG0580030105.01.T01 AT2G33480 68.675 166 45 2 1 163 1 162 2.36e-81 244
MsG0580030105.01.T01 AT3G04070 53.143 175 68 4 6 166 1 175 9.26e-56 181
MsG0580030105.01.T01 AT1G69490 54.971 171 62 4 7 167 1 166 2.96e-55 177
MsG0580030105.01.T01 AT1G61110 55.429 175 53 5 11 165 12 181 2.46e-54 177
MsG0580030105.01.T01 AT1G77450 51.705 176 68 5 6 171 1 169 3.58e-54 174
MsG0580030105.01.T01 AT3G04070 49.215 191 67 4 6 166 1 191 1.46e-53 176
MsG0580030105.01.T01 AT5G61430 53.892 167 65 5 6 164 7 169 1.62e-53 175
MsG0580030105.01.T01 AT5G39610 53.503 157 61 3 13 161 18 170 8.11e-53 172
MsG0580030105.01.T01 AT2G24430 54.268 164 68 3 9 167 10 171 1.11e-52 172
MsG0580030105.01.T01 AT2G24430 54.268 164 68 3 9 167 10 171 1.11e-52 172
MsG0580030105.01.T01 AT1G65910 44.144 222 99 5 13 213 4 221 1.68e-52 179
MsG0580030105.01.T01 AT5G07680 52.795 161 64 4 12 164 14 170 4.47e-52 171
MsG0580030105.01.T01 AT5G07680 53.797 158 61 4 15 164 3 156 6.90e-52 170
MsG0580030105.01.T01 AT1G33280 53.595 153 61 2 15 161 8 156 1.09e-51 169
MsG0580030105.01.T01 AT3G15510 55.625 160 52 4 19 161 21 178 1.52e-51 171
MsG0580030105.01.T01 AT4G27410 50.920 163 70 3 12 168 11 169 1.92e-51 169
MsG0580030105.01.T01 AT5G17260 51.205 166 68 3 13 169 4 165 2.01e-51 173
MsG0580030105.01.T01 AT1G54330 54.268 164 62 3 13 169 4 161 3.62e-51 168
MsG0580030105.01.T01 AT3G18400 53.416 161 66 4 12 167 2 158 4.57e-51 168
MsG0580030105.01.T01 AT4G10350 47.596 208 70 8 15 213 9 186 4.81e-51 169
MsG0580030105.01.T01 AT3G03200 49.123 171 74 3 13 174 4 170 6.37e-51 172
MsG0580030105.01.T01 AT1G62700 50.282 177 77 4 14 183 6 178 1.31e-50 169
MsG0580030105.01.T01 AT1G62700 50.282 177 77 4 14 183 6 178 1.31e-50 169
MsG0580030105.01.T01 AT3G04060 54.140 157 61 4 13 161 18 171 2.68e-50 167
MsG0580030105.01.T01 AT1G76420 53.503 157 64 4 12 162 19 172 4.15e-50 166
MsG0580030105.01.T01 AT1G12260 50.000 168 73 4 15 175 7 170 4.16e-50 166
MsG0580030105.01.T01 AT5G18270 52.866 157 63 3 13 161 19 172 6.82e-50 166
MsG0580030105.01.T01 AT1G33060 52.903 155 61 3 15 161 24 174 9.76e-50 172
MsG0580030105.01.T01 AT1G33060 52.903 155 61 3 15 161 24 174 1.01e-49 171
MsG0580030105.01.T01 AT5G18270 52.532 158 64 3 13 162 19 173 1.34e-49 165
MsG0580030105.01.T01 AT1G52880 50.867 173 62 3 19 177 21 184 1.35e-49 164
MsG0580030105.01.T01 AT1G12260 50.000 168 73 4 15 175 7 170 1.73e-49 166
MsG0580030105.01.T01 AT2G18060 48.889 180 76 6 15 186 9 180 1.89e-49 165
MsG0580030105.01.T01 AT2G18060 48.889 180 76 6 15 186 9 180 1.89e-49 165
MsG0580030105.01.T01 AT1G01720 44.860 214 99 6 13 216 5 209 2.02e-49 163
MsG0580030105.01.T01 AT5G66300 49.718 177 75 6 15 183 12 182 2.21e-49 163
MsG0580030105.01.T01 AT4G36160 48.876 178 74 5 15 183 14 183 2.73e-49 165
MsG0580030105.01.T01 AT4G36160 48.876 178 74 5 15 183 10 179 2.90e-49 165
MsG0580030105.01.T01 AT4G36160 48.876 178 74 5 15 183 10 179 2.90e-49 165
MsG0580030105.01.T01 AT3G17730 50.955 157 65 3 13 161 4 156 3.42e-49 161
MsG0580030105.01.T01 AT5G62380 53.797 158 58 6 13 161 5 156 3.46e-49 164
MsG0580030105.01.T01 AT5G62380 53.797 158 58 6 13 161 5 156 3.46e-49 164
MsG0580030105.01.T01 AT3G15170 50.595 168 72 5 12 171 17 181 4.83e-49 163
MsG0580030105.01.T01 AT4G35580 45.918 196 86 4 15 202 9 192 5.68e-49 167
MsG0580030105.01.T01 AT4G35580 45.918 196 86 4 15 202 9 192 6.16e-49 167
MsG0580030105.01.T01 AT4G35580 45.918 196 86 4 15 202 9 192 6.81e-49 167
MsG0580030105.01.T01 AT5G63790 48.370 184 78 4 2 174 37 214 9.18e-49 162
MsG0580030105.01.T01 AT1G79580 51.899 158 65 3 11 161 13 166 9.90e-49 164
MsG0580030105.01.T01 AT1G79580 51.899 158 65 3 11 161 13 166 9.90e-49 164
MsG0580030105.01.T01 AT1G79580 51.899 158 65 3 11 161 13 166 9.90e-49 164
MsG0580030105.01.T01 AT1G79580 51.899 158 65 3 11 161 13 166 9.90e-49 164
MsG0580030105.01.T01 AT1G79580 51.899 158 65 3 11 161 13 166 9.90e-49 164
MsG0580030105.01.T01 AT5G63790 48.370 184 78 4 2 174 47 224 9.95e-49 162
MsG0580030105.01.T01 AT4G27410 46.111 180 70 3 12 168 11 186 1.17e-48 162
MsG0580030105.01.T01 AT5G53950 51.923 156 65 3 15 162 17 170 1.30e-47 160
MsG0580030105.01.T01 AT5G08790 52.663 169 61 6 12 168 4 165 1.46e-47 158
MsG0580030105.01.T01 AT3G29035 57.143 133 50 2 12 141 21 149 1.63e-47 159
MsG0580030105.01.T01 AT5G46590 44.944 178 86 3 11 179 2 176 1.91e-47 158
MsG0580030105.01.T01 AT3G12977 44.809 183 88 5 12 185 15 193 4.62e-47 157
MsG0580030105.01.T01 AT1G52890 49.693 163 72 3 12 168 11 169 5.52e-47 157
MsG0580030105.01.T01 AT1G71930 49.351 154 67 3 15 161 9 158 7.07e-47 157
MsG0580030105.01.T01 AT1G71930 49.351 154 67 3 15 161 9 158 7.07e-47 157
MsG0580030105.01.T01 AT2G46770 45.355 183 74 4 1 161 2 180 1.26e-46 158
MsG0580030105.01.T01 AT3G15500 47.953 171 79 3 12 176 11 177 3.97e-46 155
MsG0580030105.01.T01 AT2G33480 66.355 107 29 2 60 163 3 105 4.28e-46 152
MsG0580030105.01.T01 AT3G61910 45.143 175 70 5 10 162 6 176 8.33e-46 155
MsG0580030105.01.T01 AT3G10490 51.592 157 63 3 15 162 27 179 8.83e-46 152
MsG0580030105.01.T01 AT3G10480 52.564 156 61 3 15 161 27 178 9.29e-46 157
MsG0580030105.01.T01 AT1G56010 45.402 174 81 4 12 175 16 185 1.40e-45 154
MsG0580030105.01.T01 AT1G32770 45.614 171 70 4 10 161 11 177 2.36e-45 154
MsG0580030105.01.T01 AT3G10500 50.000 164 70 3 7 162 1 160 5.40e-45 157
MsG0580030105.01.T01 AT5G04410 50.610 164 69 3 7 162 1 160 1.04e-44 157
MsG0580030105.01.T01 AT3G10480 52.258 155 62 3 15 161 27 177 1.28e-44 154
MsG0580030105.01.T01 AT3G10490 51.592 157 63 3 15 162 27 179 7.10e-44 152
MsG0580030105.01.T01 AT5G46590 47.619 147 69 2 11 152 2 145 1.06e-43 148
MsG0580030105.01.T01 AT4G17980 45.963 161 75 3 11 161 2 160 1.82e-43 147
MsG0580030105.01.T01 AT4G17980 45.963 161 75 3 11 161 2 160 2.15e-43 147
MsG0580030105.01.T01 AT5G39820 41.951 205 81 6 2 179 8 201 5.69e-43 148
MsG0580030105.01.T01 AT4G28530 47.337 169 67 5 14 163 9 174 2.78e-42 146
MsG0580030105.01.T01 AT2G17040 43.316 187 85 6 12 181 4 186 1.91e-41 142
MsG0580030105.01.T01 AT5G24590 47.368 171 67 6 7 161 1 164 6.50e-41 145
MsG0580030105.01.T01 AT3G10480 43.386 189 61 3 15 161 27 211 8.91e-41 145
MsG0580030105.01.T01 AT1G32510 45.783 166 78 3 15 168 6 171 1.28e-40 140
MsG0580030105.01.T01 AT3G49530 46.452 155 72 4 15 161 13 164 1.94e-40 143
MsG0580030105.01.T01 AT3G49530 46.452 155 72 4 15 161 13 164 2.96e-40 143
MsG0580030105.01.T01 AT3G12910 41.284 218 103 8 13 207 20 235 4.09e-40 139
MsG0580030105.01.T01 AT1G26870 45.294 170 75 5 8 162 10 176 2.91e-39 140
MsG0580030105.01.T01 AT2G43000 38.679 212 110 6 12 216 16 214 1.23e-38 135
MsG0580030105.01.T01 AT1G34190 46.626 163 72 5 9 162 11 167 8.04e-38 138
MsG0580030105.01.T01 AT1G34180 50.725 138 58 3 9 141 11 143 3.79e-37 135
MsG0580030105.01.T01 AT5G64060 44.025 159 77 3 11 161 2 156 9.46e-37 132
MsG0580030105.01.T01 AT2G02450 47.945 146 69 4 18 159 54 196 1.07e-36 132
MsG0580030105.01.T01 AT2G02450 47.945 146 69 4 18 159 54 196 1.14e-36 133
MsG0580030105.01.T01 AT1G34180 50.725 138 58 3 9 141 11 143 1.17e-36 135
MsG0580030105.01.T01 AT1G34180 46.667 150 58 3 9 141 11 155 4.30e-36 132
MsG0580030105.01.T01 AT5G09330 41.379 203 102 5 11 204 2 196 4.99e-36 132
MsG0580030105.01.T01 AT5G09330 41.379 203 102 5 11 204 2 196 4.99e-36 132
MsG0580030105.01.T01 AT5G09330 41.379 203 102 5 11 204 2 196 4.99e-36 132
MsG0580030105.01.T01 AT5G09330 41.379 203 102 5 11 204 2 196 4.99e-36 132
MsG0580030105.01.T01 AT5G09330 41.379 203 102 5 11 204 2 196 4.99e-36 132
MsG0580030105.01.T01 AT1G34180 46.667 150 58 3 9 141 11 155 1.16e-35 132
MsG0580030105.01.T01 AT4G10350 46.711 152 48 6 65 213 18 139 4.41e-35 126
MsG0580030105.01.T01 AT5G22290 42.069 145 73 3 18 158 24 161 9.50e-35 126
MsG0580030105.01.T01 AT2G27300 40.994 161 78 4 7 158 1 153 9.58e-35 126
MsG0580030105.01.T01 AT3G44290 42.759 145 71 3 18 158 17 153 2.96e-34 122
MsG0580030105.01.T01 AT3G44290 42.759 145 71 3 18 158 17 153 2.50e-33 122
MsG0580030105.01.T01 AT5G14000 36.571 175 104 3 1 172 1 171 2.72e-33 119
MsG0580030105.01.T01 AT5G04395 42.857 147 67 2 12 142 25 170 2.83e-33 119
MsG0580030105.01.T01 AT5G61430 55.238 105 38 3 65 164 6 106 6.15e-33 120
MsG0580030105.01.T01 AT5G14000 39.744 156 87 3 1 153 1 152 2.63e-32 115
MsG0580030105.01.T01 AT1G02230 41.176 170 86 7 16 178 4 166 9.31e-32 119
MsG0580030105.01.T01 AT3G12977 46.825 126 57 4 66 185 19 140 2.77e-31 114
MsG0580030105.01.T01 AT1G56010 48.673 113 48 2 69 175 10 118 6.04e-31 114
MsG0580030105.01.T01 AT1G02250 42.484 153 76 5 16 161 4 151 1.76e-29 113
MsG0580030105.01.T01 AT1G32870 43.787 169 77 5 4 162 1 161 3.72e-29 114
MsG0580030105.01.T01 AT1G32870 43.787 169 77 5 4 162 1 161 4.13e-29 114
MsG0580030105.01.T01 AT1G32870 43.787 169 77 5 4 162 37 197 5.36e-29 114
MsG0580030105.01.T01 AT5G64530 35.638 188 89 5 13 181 1 175 1.51e-28 106
MsG0580030105.01.T01 AT5G50820 35.266 207 100 6 13 214 15 192 5.94e-28 105
MsG0580030105.01.T01 AT4G01550 37.278 169 96 5 13 174 2 167 1.87e-27 108
MsG0580030105.01.T01 AT5G64530 42.748 131 60 4 13 141 1 118 3.32e-27 102
MsG0580030105.01.T01 AT4G01520 37.647 170 94 6 16 178 5 169 2.06e-26 103
MsG0580030105.01.T01 AT4G01540 38.690 168 91 6 18 178 7 169 2.48e-26 105
MsG0580030105.01.T01 AT4G01540 38.690 168 91 6 18 178 7 169 3.33e-26 105
MsG0580030105.01.T01 AT4G01540 38.690 168 91 6 18 178 7 169 3.36e-26 105
MsG0580030105.01.T01 AT4G01540 38.690 168 91 6 18 178 7 169 5.34e-26 105
MsG0580030105.01.T01 AT3G04420 38.125 160 84 6 16 168 4 155 1.13e-25 101
MsG0580030105.01.T01 AT3G04420 38.125 160 84 6 16 168 4 155 1.20e-25 102
MsG0580030105.01.T01 AT3G44350 37.267 161 84 5 15 162 5 161 1.12e-24 97.8
MsG0580030105.01.T01 AT5G22380 36.250 160 83 5 18 162 8 163 3.39e-23 94.0
MsG0580030105.01.T01 AT1G02220 38.710 155 73 6 16 160 4 146 7.48e-23 95.5
MsG0580030105.01.T01 AT3G44350 38.298 141 74 4 15 146 5 141 1.56e-22 90.1
MsG0580030105.01.T01 AT2G18060 46.465 99 43 4 90 186 2 92 1.48e-21 90.5
MsG0580030105.01.T01 AT3G10490 52.439 82 31 2 85 162 2 79 5.21e-21 90.1
MsG0580030105.01.T01 AT3G10490 52.439 82 31 2 85 162 2 79 5.21e-21 90.1
MsG0580030105.01.T01 AT4G28530 34.911 169 51 5 14 163 9 137 3.09e-20 87.4
MsG0580030105.01.T01 AT2G43000 35.417 144 77 4 77 216 5 136 1.89e-19 83.2
MsG0580030105.01.T01 AT1G01010 35.849 159 81 7 17 161 5 156 1.12e-18 84.0
MsG0580030105.01.T01 AT3G55210 32.948 173 82 8 15 164 11 172 6.36e-17 77.8
MsG0580030105.01.T01 AT3G56530 35.220 159 86 7 12 160 49 200 4.21e-16 75.9
MsG0580030105.01.T01 AT5G41090 28.481 158 93 4 15 159 8 158 1.85e-15 72.8
MsG0580030105.01.T01 AT5G14000 51.613 62 30 0 1 62 1 62 3.84e-15 72.8
MsG0580030105.01.T01 AT5G22290 47.059 68 29 2 91 158 2 62 1.00e-14 71.2
MsG0580030105.01.T01 AT1G28470 32.143 168 89 9 15 163 77 238 1.38e-14 71.6
MsG0580030105.01.T01 AT4G29230 31.461 178 89 9 13 163 46 217 1.84e-14 72.0
MsG0580030105.01.T01 AT4G29230 31.461 178 89 9 13 163 45 216 1.86e-14 72.0
MsG0580030105.01.T01 AT4G29230 31.461 178 89 9 13 163 46 217 2.14e-14 71.6
MsG0580030105.01.T01 AT5G56620 31.868 182 86 9 13 163 41 215 7.11e-13 67.4
MsG0580030105.01.T01 AT5G56620 33.750 160 69 8 13 141 41 194 8.39e-13 67.0
MsG0580030105.01.T01 AT5G56620 33.750 160 69 8 13 141 41 194 9.24e-13 67.0
MsG0580030105.01.T01 AT4G28500 30.178 169 92 8 15 163 59 221 2.32e-12 65.5

Find 47 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCACTCCCATCCTCTTT+TGG 0.255864 5:+106735147 MsG0580030105.01.T01:CDS
TCGGTTCCCGTTTGGATACT+TGG 0.293238 5:-106734653 None:intergenic
TGTTGTTCTATTAGGTGATA+TGG 0.301557 5:+106734597 MsG0580030105.01.T01:intron
CTCCTCAATCACAAATGAAT+TGG 0.308698 5:+106735098 MsG0580030105.01.T01:CDS
GAGCTACAAACTCTGGTTAC+TGG 0.345872 5:+106734683 MsG0580030105.01.T01:CDS
CTGTTAGATCGGTTCCCGTT+TGG 0.351967 5:-106734661 None:intergenic
ATCCAATTCATTTGTGATTG+AGG 0.401398 5:-106735100 None:intergenic
TTACTGGAAGGCAACTGGTT+TGG 0.413426 5:+106734699 MsG0580030105.01.T01:CDS
AAGACGACTCGTGAAGTTGT+TGG 0.418647 5:+106734745 MsG0580030105.01.T01:CDS
ATCTTTGCAAGTCTAATCCT+TGG 0.418860 5:+106734386 MsG0580030105.01.T01:CDS
TTCATTTGTGATTGAGGAGG+AGG 0.421555 5:-106735094 None:intergenic
CTTCATCTGTTGGATGAAAA+CGG 0.429980 5:-106734291 None:intergenic
TCTGGTTACTGGAAGGCAAC+TGG 0.438388 5:+106734694 MsG0580030105.01.T01:CDS
GACTTGCAAAGATCAACTTC+AGG 0.444238 5:-106734376 None:intergenic
TCTTTGCAAGTCTAATCCTT+GGG 0.461136 5:+106734387 MsG0580030105.01.T01:CDS
CTCAGCTTCAAGTTCAAAAG+TGG 0.464412 5:+106735023 MsG0580030105.01.T01:CDS
ACAACAAGTTCTTCATCTGT+TGG 0.464543 5:-106734301 None:intergenic
AAGATCAACTTCAGGAATGA+TGG 0.468508 5:-106734368 None:intergenic
TTCCTCTCACTCCAACCCCT+TGG 0.484311 5:+106734852 MsG0580030105.01.T01:CDS
AAAGGGAAAGAGAAGACCTT+AGG 0.496728 5:-106734337 None:intergenic
TGTTCAATATTTGAAGCCTA+AGG 0.506309 5:+106734321 MsG0580030105.01.T01:CDS
AAAGAAGCCAAGTATCCAAA+CGG 0.506694 5:+106734646 MsG0580030105.01.T01:CDS
GAATGATGGAAGCAGGTAAA+GGG 0.510410 5:-106734354 None:intergenic
GGTTGGAGTGAGAGGAAGTG+AGG 0.514880 5:-106734846 None:intergenic
TAAGCATTTCCAAAAGAGGA+TGG 0.518802 5:-106735156 None:intergenic
GGATTAAGCATTTCCAAAAG+AGG 0.521576 5:-106735160 None:intergenic
AGTTTGTAGCTCTGTTAGAT+CGG 0.532621 5:-106734672 None:intergenic
GGAATGATGGAAGCAGGTAA+AGG 0.533367 5:-106734355 None:intergenic
ACTTCAGGAATGATGGAAGC+AGG 0.542259 5:-106734361 None:intergenic
GACCAAGGGGTTGGAGTGAG+AGG 0.548262 5:-106734854 None:intergenic
CTCATGGTTCAAGAACTGAT+TGG 0.548704 5:+106734806 MsG0580030105.01.T01:CDS
AGAAAGACTGACCAAGGGGT+TGG 0.548887 5:-106734863 None:intergenic
AAGAAGCCAAGTATCCAAAC+GGG 0.550135 5:+106734647 MsG0580030105.01.T01:CDS
TCTAACAGAGCTACAAACTC+TGG 0.560803 5:+106734676 MsG0580030105.01.T01:CDS
AAGCATTTCCAAAAGAGGAT+GGG 0.563423 5:-106735155 None:intergenic
CAATTCATTTGTGATTGAGG+AGG 0.568174 5:-106735097 None:intergenic
GGATGAAAACGGAAACCTGC+TGG 0.571341 5:-106734280 None:intergenic
CGCATATTTCTGAAGAGTAG+AGG 0.580742 5:+106734979 MsG0580030105.01.T01:CDS
TACAGAGGCAAACCACCTCA+TGG 0.581454 5:+106734790 MsG0580030105.01.T01:CDS
TCTAATCCTTGGGATTTACC+TGG 0.582682 5:+106734397 MsG0580030105.01.T01:CDS
GGTGAAGTGAGATTGCCAGC+AGG 0.595430 5:+106734265 MsG0580030105.01.T01:CDS
AGCATACCAGGTAAATCCCA+AGG 0.597008 5:-106734403 None:intergenic
TCAGTTCTTGAACCATGAGG+TGG 0.615010 5:-106734802 None:intergenic
TACAAACTCTGGTTACTGGA+AGG 0.635081 5:+106734687 MsG0580030105.01.T01:CDS
ATTTCTGAAGAGTAGAGGTG+AGG 0.681363 5:+106734984 MsG0580030105.01.T01:CDS
TAGGTGATATGGAACAAGAG+AGG 0.694959 5:+106734608 MsG0580030105.01.T01:intron
CAATCAGTTCTTGAACCATG+AGG 0.707588 5:-106734805 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAATATATGAATGAAT+TGG + Chr5:106734926-106734945 MsG0580030105.01.T01:intron 10.0%
!! TATTAATATATGAATGAATT+GGG + Chr5:106734927-106734946 MsG0580030105.01.T01:intron 10.0%
!! AAAATAGAAAAGAAAAGAAA+AGG - Chr5:106734432-106734451 None:intergenic 15.0%
!!! ATGAATTTTATGAAGAAGAA+TGG + Chr5:106734244-106734263 MsG0580030105.01.T01:CDS 20.0%
! AATTCAGAGAAAAGAAAGAA+AGG - Chr5:106734898-106734917 None:intergenic 25.0%
ATCCAATTCATTTGTGATTG+AGG - Chr5:106735103-106735122 None:intergenic 30.0%
TAGTAGAAGTTATCATGTTC+TGG - Chr5:106734538-106734557 None:intergenic 30.0%
TGTTGTTCTATTAGGTGATA+TGG + Chr5:106734597-106734616 MsG0580030105.01.T01:intron 30.0%
! GGTTTTGCAGAATGAAAATT+GGG + Chr5:106734948-106734967 MsG0580030105.01.T01:intron 30.0%
! TGAGTATGTGTTGTTCTATT+AGG + Chr5:106734589-106734608 MsG0580030105.01.T01:intron 30.0%
! TGTTCAATATTTGAAGCCTA+AGG + Chr5:106734321-106734340 MsG0580030105.01.T01:CDS 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG + Chr5:106734775-106734794 MsG0580030105.01.T01:CDS 30.0%
AAAGAAAGAAAGACTGACCA+AGG - Chr5:106734872-106734891 None:intergenic 35.0%
AAAGAAGCCAAGTATCCAAA+CGG + Chr5:106734646-106734665 MsG0580030105.01.T01:CDS 35.0%
AAGAAAAGGTAAAGCATACC+AGG - Chr5:106734418-106734437 None:intergenic 35.0%
AAGAAAGAAAGACTGACCAA+GGG - Chr5:106734871-106734890 None:intergenic 35.0%
AAGATCAACTTCAGGAATGA+TGG - Chr5:106734371-106734390 None:intergenic 35.0%
AAGCATTTCCAAAAGAGGAT+GGG - Chr5:106735158-106735177 None:intergenic 35.0%
ACAACAAGTTCTTCATCTGT+TGG - Chr5:106734304-106734323 None:intergenic 35.0%
ATCTTTGCAAGTCTAATCCT+TGG + Chr5:106734386-106734405 MsG0580030105.01.T01:CDS 35.0%
CAATTCATTTGTGATTGAGG+AGG - Chr5:106735100-106735119 None:intergenic 35.0%
CTCCTCAATCACAAATGAAT+TGG + Chr5:106735098-106735117 MsG0580030105.01.T01:CDS 35.0%
CTTCATCTGTTGGATGAAAA+CGG - Chr5:106734294-106734313 None:intergenic 35.0%
TAAGCATTTCCAAAAGAGGA+TGG - Chr5:106735159-106735178 None:intergenic 35.0%
TCTTTGCAAGTCTAATCCTT+GGG + Chr5:106734387-106734406 MsG0580030105.01.T01:CDS 35.0%
! AGTTTGTAGCTCTGTTAGAT+CGG - Chr5:106734675-106734694 None:intergenic 35.0%
! GGGTTTTGCAGAATGAAAAT+TGG + Chr5:106734947-106734966 MsG0580030105.01.T01:intron 35.0%
AAAGGGAAAGAGAAGACCTT+AGG - Chr5:106734340-106734359 None:intergenic 40.0%
AAGAAGCCAAGTATCCAAAC+GGG + Chr5:106734647-106734666 MsG0580030105.01.T01:CDS 40.0%
AGAAAGAAAGACTGACCAAG+GGG - Chr5:106734870-106734889 None:intergenic 40.0%
CAATCAGTTCTTGAACCATG+AGG - Chr5:106734808-106734827 None:intergenic 40.0%
CTCATGGTTCAAGAACTGAT+TGG + Chr5:106734806-106734825 MsG0580030105.01.T01:CDS 40.0%
GACTTGCAAAGATCAACTTC+AGG - Chr5:106734379-106734398 None:intergenic 40.0%
TACAAACTCTGGTTACTGGA+AGG + Chr5:106734687-106734706 MsG0580030105.01.T01:CDS 40.0%
TACTGCTGAACAATGTCATG+TGG + Chr5:106734559-106734578 MsG0580030105.01.T01:intron 40.0%
TAGGTGATATGGAACAAGAG+AGG + Chr5:106734608-106734627 MsG0580030105.01.T01:intron 40.0%
TCTAACAGAGCTACAAACTC+TGG + Chr5:106734676-106734695 MsG0580030105.01.T01:CDS 40.0%
TCTAATCCTTGGGATTTACC+TGG + Chr5:106734397-106734416 MsG0580030105.01.T01:CDS 40.0%
TTCATTTGTGATTGAGGAGG+AGG - Chr5:106735097-106735116 None:intergenic 40.0%
! ATTTCTGAAGAGTAGAGGTG+AGG + Chr5:106734984-106735003 MsG0580030105.01.T01:CDS 40.0%
! CGCATATTTCTGAAGAGTAG+AGG + Chr5:106734979-106734998 MsG0580030105.01.T01:CDS 40.0%
! CTCAGCTTCAAGTTCAAAAG+TGG + Chr5:106735023-106735042 MsG0580030105.01.T01:CDS 40.0%
! GAATGATGGAAGCAGGTAAA+GGG - Chr5:106734357-106734376 None:intergenic 40.0%
AAGACGACTCGTGAAGTTGT+TGG + Chr5:106734745-106734764 MsG0580030105.01.T01:CDS 45.0%
AGCATACCAGGTAAATCCCA+AGG - Chr5:106734406-106734425 None:intergenic 45.0%
GAGCTACAAACTCTGGTTAC+TGG + Chr5:106734683-106734702 MsG0580030105.01.T01:CDS 45.0%
TCAGTTCTTGAACCATGAGG+TGG - Chr5:106734805-106734824 None:intergenic 45.0%
TTACTGGAAGGCAACTGGTT+TGG + Chr5:106734699-106734718 MsG0580030105.01.T01:CDS 45.0%
! AACTCACTCCCATCCTCTTT+TGG + Chr5:106735147-106735166 MsG0580030105.01.T01:CDS 45.0%
! ACTTCAGGAATGATGGAAGC+AGG - Chr5:106734364-106734383 None:intergenic 45.0%
! GGAATGATGGAAGCAGGTAA+AGG - Chr5:106734358-106734377 None:intergenic 45.0%
AACACAGACGTCGGACACAA+TGG + Chr5:106734493-106734512 MsG0580030105.01.T01:intron 50.0%
AGAAAGACTGACCAAGGGGT+TGG - Chr5:106734866-106734885 None:intergenic 50.0%
CGAAGCACAAACACAGACGT+CGG + Chr5:106734484-106734503 MsG0580030105.01.T01:intron 50.0%
GGATGAAAACGGAAACCTGC+TGG - Chr5:106734283-106734302 None:intergenic 50.0%
TACAGAGGCAAACCACCTCA+TGG + Chr5:106734790-106734809 MsG0580030105.01.T01:CDS 50.0%
TCGGTTCCCGTTTGGATACT+TGG - Chr5:106734656-106734675 None:intergenic 50.0%
TCTGGTTACTGGAAGGCAAC+TGG + Chr5:106734694-106734713 MsG0580030105.01.T01:CDS 50.0%
! CTGTTAGATCGGTTCCCGTT+TGG - Chr5:106734664-106734683 None:intergenic 50.0%
GGTGAAGTGAGATTGCCAGC+AGG + Chr5:106734265-106734284 MsG0580030105.01.T01:CDS 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG - Chr5:106734849-106734868 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG + Chr5:106734852-106734871 MsG0580030105.01.T01:CDS 55.0%
GACCAAGGGGTTGGAGTGAG+AGG - Chr5:106734857-106734876 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 106734235 106735179 106734235 ID=MsG0580030105.01;Name=MsG0580030105.01
Chr5 mRNA 106734235 106735179 106734235 ID=MsG0580030105.01.T01;Parent=MsG0580030105.01;Name=MsG0580030105.01.T01;_AED=0.17;_eAED=0.19;_QI=0|0|0|1|1|1|3|0|222
Chr5 exon 106734235 106734418 106734235 ID=MsG0580030105.01.T01:exon:17242;Parent=MsG0580030105.01.T01
Chr5 exon 106734611 106734873 106734611 ID=MsG0580030105.01.T01:exon:17243;Parent=MsG0580030105.01.T01
Chr5 exon 106734958 106735179 106734958 ID=MsG0580030105.01.T01:exon:17244;Parent=MsG0580030105.01.T01
Chr5 CDS 106734235 106734418 106734235 ID=MsG0580030105.01.T01:cds;Parent=MsG0580030105.01.T01
Chr5 CDS 106734611 106734873 106734611 ID=MsG0580030105.01.T01:cds;Parent=MsG0580030105.01.T01
Chr5 CDS 106734958 106735179 106734958 ID=MsG0580030105.01.T01:cds;Parent=MsG0580030105.01.T01
Gene Sequence

>MsG0580030105.01.T01

ATGGAGAAGATGAATTTTATGAAGAAGAATGGTGAAGTGAGATTGCCAGCAGGTTTCCGTTTTCATCCAACAGATGAAGAACTTGTTGTTCAATATTTGAAGCCTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATCATTCCTGAAGTTGATCTTTGCAAGTCTAATCCTTGGGATTTACCTGGTGATATGGAACAAGAGAGGTACTTTTTCAGTACTAAAGAAGCCAAGTATCCAAACGGGAACCGATCTAACAGAGCTACAAACTCTGGTTACTGGAAGGCAACTGGTTTGGACAAAGAAATCATGAATTCTTCGAAGACGACTCGTGAAGTTGTTGGTATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGAATGAAAATTGGGTTCTATGTCGCATATTTCTGAAGAGTAGAGGTGAGGTGAAGAAGAAGAAGAACTCAGCTTCAAGTTCAAAAGTGGTTGTTTTCTATGATTTCTTCGCAGAGAAGAAGAAAAATACTGATGCATCCTCCTCCTCAATCACAAATGAATTGGATGAACATGAAAATGAAGACAGCAGTAACTCACTCCCATCCTCTTTTGGAAATGCTTAA

Protein sequence

>MsG0580030105.01.T01

MEKMNFMKKNGEVRLPAGFRFHPTDEELVVQYLKPKVFSFPLPASIIPEVDLCKSNPWDLPGDMEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKEIMNSSKTTREVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLNENWVLCRIFLKSRGEVKKKKNSASSSKVVVFYDFFAEKKKNTDASSSSITNELDEHENEDSSNSLPSSFGNA*