AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013176.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013176.01.T01 MTR_7g091230 77.852 298 23 1 1 255 1 298 2.44e-165 460
MsG0380013176.01.T01 MTR_3g040300 88.281 256 30 0 1 256 1 256 2.51e-165 458
MsG0380013176.01.T01 MTR_3g037190 76.589 299 27 1 1 256 1 299 1.28e-164 458
MsG0380013176.01.T01 MTR_3g040150 70.903 299 39 2 1 256 1 294 5.83e-150 424
MsG0380013176.01.T01 MTR_1g053065 66.107 298 57 2 1 255 1 297 1.87e-136 387
MsG0380013176.01.T01 MTR_1g023620 70.130 77 19 1 176 248 40 116 3.36e-27 102
MsG0380013176.01.T01 MTR_5g019910 33.880 183 113 4 76 256 145 321 1.32e-19 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013176.01.T01 AT3G10330 73.154 298 36 2 1 255 1 297 7.63e-154 431
MsG0380013176.01.T01 AT2G41630 67.224 299 54 2 1 256 1 298 2.16e-142 402
MsG0380013176.01.T01 AT3G29380 34.405 311 146 6 1 255 1 309 9.92e-53 174
MsG0380013176.01.T01 AT3G57370 38.542 192 107 4 69 256 164 348 1.67e-33 125
MsG0380013176.01.T01 AT4G36650 33.690 187 116 4 72 256 140 320 9.73e-20 88.6
MsG0380013176.01.T01 AT4G36650 34.132 167 102 4 72 236 140 300 3.52e-16 77.4

Find 72 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGTTGCAGCAATTGTTAT+TGG 0.231668 3:-32105041 None:intergenic
TAGTAACTGATATATCTTTC+AGG 0.232770 3:-32105103 None:intergenic
CGAACTTTCGCTACCGAATC+TGG 0.260194 3:+32104564 MsG0380013176.01.T01:CDS
CTCATTAGCTCGGTCCTTAA+TGG 0.271826 3:-32104673 None:intergenic
AATATTGTGGAGAGGGTTAC+TGG 0.305333 3:-32104616 None:intergenic
CTCCGAGCAAACTGCATTGC+CGG 0.316285 3:-32104493 None:intergenic
CTCGGAGTGTGGTCTTGTCT+TGG 0.318913 3:+32104509 MsG0380013176.01.T01:CDS
AAGAAATCAGGACGCATTAT+TGG 0.327460 3:+32104734 MsG0380013176.01.T01:CDS
GGGACTGGTTCCGACCATTA+AGG 0.340616 3:+32104659 MsG0380013176.01.T01:CDS
AATCCGAAGAATTTGATATA+AGG 0.342682 3:+32105012 MsG0380013176.01.T01:CDS
TCTCCACAATATTGATACTA+TGG 0.348085 3:+32104626 MsG0380013176.01.T01:CDS
TGGTTGTCAATCTGTAGAAA+TGG 0.379910 3:+32104896 MsG0380013176.01.T01:CDS
TCTCCTTATATCAAATTCTT+CGG 0.387373 3:-32105015 None:intergenic
CATAGTGAAACAACTAGGTT+TGG 0.406406 3:+32104869 MsG0380013176.01.T01:CDS
TCGGAGTGTGGTCTTGTCTT+GGG 0.417903 3:+32104510 MsG0380013176.01.T01:CDS
AAATGGGAACAATTCATGTT+GGG 0.418733 3:+32104913 MsG0380013176.01.T01:CDS
GTATAGTAAGGCAAGAAATC+AGG 0.418976 3:+32104722 MsG0380013176.01.T01:CDS
GCGACCAATTTCCTTCTTCG+TGG 0.436727 3:-32104835 None:intergenic
GGAGCCACGAAGAAGGAAAT+TGG 0.437174 3:+32104831 MsG0380013176.01.T01:CDS
TTCCTTCTTCGTGGCTCCAT+TGG 0.443754 3:-32104826 None:intergenic
ATCCTTGTATGAGTTCCTAA+TGG 0.459175 3:-32105144 None:intergenic
AAGATGGTTATTTCCAGATT+CGG 0.459697 3:-32104577 None:intergenic
AGTAACTGATATATCTTTCA+GGG 0.464029 3:-32105102 None:intergenic
TGATACTATGGCTGAGAGGT+TGG 0.467972 3:+32104638 MsG0380013176.01.T01:CDS
GGTTGTCAATCTGTAGAAAT+GGG 0.470830 3:+32104897 MsG0380013176.01.T01:CDS
AAACAACTAGGTTTGGAGAA+TGG 0.472437 3:+32104876 MsG0380013176.01.T01:CDS
CGCCGGCAATGCAGTTTGCT+CGG 0.482944 3:+32104491 MsG0380013176.01.T01:CDS
CAAATTTCCTTTACCGTGCG+TGG 0.488683 3:-32104795 None:intergenic
AGACAAGCCACGCACGGTAA+AGG 0.495637 3:+32104788 MsG0380013176.01.T01:CDS
GATACTATGGCTGAGAGGTT+GGG 0.496187 3:+32104639 MsG0380013176.01.T01:CDS
TCAAGCTGTTAAAGCAGCTC+AGG 0.503242 3:+32104977 MsG0380013176.01.T01:CDS
GAAATGGGAACAATTCATGT+TGG 0.507272 3:+32104912 MsG0380013176.01.T01:CDS
TGAAAATCAGAAGTATAGTA+AGG 0.507426 3:+32104710 MsG0380013176.01.T01:CDS
TGCCAATGGAGCCACGAAGA+AGG 0.515173 3:+32104824 MsG0380013176.01.T01:CDS
TGGTATTATCTTTGAAACAT+GGG 0.517194 3:-32105174 None:intergenic
CAGCGACTGCAAGCGAGCGA+CGG 0.529578 3:+32104449 MsG0380013176.01.T01:CDS
GAAATTTGCTCGATTGCCAA+TGG 0.530890 3:+32104810 MsG0380013176.01.T01:CDS
CAGCCATAGTATCAATATTG+TGG 0.531611 3:-32104629 None:intergenic
CTGCAAGCGAGCGACGGATG+TGG 0.539127 3:+32104455 MsG0380013176.01.T01:CDS
AAAGATATATCAGTTACTAC+AGG 0.542160 3:+32105107 MsG0380013176.01.T01:CDS
CCACTCGGAGGTTTCATCGA+TGG 0.547579 3:-32104541 None:intergenic
TTGGTATTATCTTTGAAACA+TGG 0.552826 3:-32105175 None:intergenic
AGCTAATGAGATATATAAGC+GGG 0.555073 3:+32104686 MsG0380013176.01.T01:CDS
GTGGTATTTGACCACTCCGC+CGG 0.560624 3:+32104474 MsG0380013176.01.T01:CDS
TAGTATCAATATTGTGGAGA+GGG 0.568828 3:-32104623 None:intergenic
AACCATTAGGAACTCATACA+AGG 0.569754 3:+32105142 MsG0380013176.01.T01:CDS
GGTATTATCTTTGAAACATG+GGG 0.573323 3:-32105173 None:intergenic
GAGTTGCAGAAGGAACCATT+AGG 0.581627 3:+32105129 MsG0380013176.01.T01:CDS
TCTTCTTCCGCATACCAGGT+TGG 0.581695 3:-32105194 None:intergenic
TATGGCTGAGAGGTTGGGAC+TGG 0.589116 3:+32104644 MsG0380013176.01.T01:CDS
AAACTGCATTGCCGGCGGAG+TGG 0.594675 3:-32104485 None:intergenic
AACCATCTTGTTCATGTCGG+TGG 0.595012 3:+32104591 MsG0380013176.01.T01:CDS
AATGCAGTTTGCTCGGAGTG+TGG 0.599156 3:+32104498 MsG0380013176.01.T01:CDS
ATATTGTGGAGAGGGTTACT+GGG 0.605382 3:-32104615 None:intergenic
GGTAGCGAAAGTTCGCCACT+CGG 0.605971 3:-32104556 None:intergenic
AATGGGAACAATTCATGTTG+GGG 0.610734 3:+32104914 MsG0380013176.01.T01:CDS
GCTTATATATCTCATTAGCT+CGG 0.615889 3:-32104683 None:intergenic
TTAGCTCGGTCCTTAATGGT+CGG 0.616613 3:-32104669 None:intergenic
GAATACATAGTGAAACAACT+AGG 0.640701 3:+32104864 MsG0380013176.01.T01:CDS
CTTGTCGACAAGCAATGTAG+AGG 0.643119 3:-32104764 None:intergenic
GTTACTACAGGAGTTGCAGA+AGG 0.644480 3:+32105119 MsG0380013176.01.T01:CDS
ATAGTATCAATATTGTGGAG+AGG 0.644880 3:-32104624 None:intergenic
CGAGCAAACTGCATTGCCGG+CGG 0.650302 3:-32104490 None:intergenic
AGCGAAAGTTCGCCACTCGG+AGG 0.652847 3:-32104553 None:intergenic
ACAAGAAGACAAGCCACGCA+CGG 0.655349 3:+32104782 MsG0380013176.01.T01:CDS
GACCACCGACATGAACAAGA+TGG 0.656349 3:-32104593 None:intergenic
AATAACCATCTTGTTCATGT+CGG 0.656698 3:+32104588 MsG0380013176.01.T01:CDS
TTTCAAAGATAATACCAACC+TGG 0.671003 3:+32105180 MsG0380013176.01.T01:CDS
GCTGCAAAATGTATCAGACA+TGG 0.685362 3:-32104430 None:intergenic
GAGCTAATGAGATATATAAG+CGG 0.694381 3:+32104685 MsG0380013176.01.T01:CDS
ATATTGATACTATGGCTGAG+AGG 0.706827 3:+32104634 MsG0380013176.01.T01:CDS
CCATCGATGAAACCTCCGAG+TGG 0.757869 3:+32104541 MsG0380013176.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAATCAAAATAAATAATA+AGG + Chr3:32106181-32106200 MsG0380013176.01.T01:intron 10.0%
!! TTAAAACTAATAATAAACAT+TGG - Chr3:32105785-32105804 None:intergenic 10.0%
!! AAAAAAAATATTCCAATATG+AGG - Chr3:32106103-32106122 None:intergenic 15.0%
!!! ATACTTTTTGTTTGAAATAA+AGG + Chr3:32105308-32105327 MsG0380013176.01.T01:intron 15.0%
!! ATAAATAGCTAATATGACAT+CGG - Chr3:32106139-32106158 None:intergenic 20.0%
!! TGATATGAACTTAACATAAA+TGG + Chr3:32106247-32106266 MsG0380013176.01.T01:intron 20.0%
!!! TTAAATCTAAAATGCACTTT+TGG + Chr3:32105572-32105591 MsG0380013176.01.T01:intron 20.0%
!!! TTTGAATGATTTTGATTTTG+AGG + Chr3:32105725-32105744 MsG0380013176.01.T01:intron 20.0%
!!! TTTTGATTACTAATCAACTA+AGG - Chr3:32106172-32106191 None:intergenic 20.0%
! AAAAGCAACACATTAAAAGT+AGG - Chr3:32106039-32106058 None:intergenic 25.0%
! AAAGATATATCAGTTACTAC+AGG + Chr3:32105107-32105126 MsG0380013176.01.T01:CDS 25.0%
! AATCCGAAGAATTTGATATA+AGG + Chr3:32105012-32105031 MsG0380013176.01.T01:CDS 25.0%
! ACTTAACATAAATGGATGTT+TGG + Chr3:32106255-32106274 MsG0380013176.01.T01:intron 25.0%
! AGTAACTGATATATCTTTCA+GGG - Chr3:32105105-32105124 None:intergenic 25.0%
! TAAGGCTATTAGATTCTAAT+TGG + Chr3:32106199-32106218 MsG0380013176.01.T01:intron 25.0%
! TAGTAACTGATATATCTTTC+AGG - Chr3:32105106-32105125 None:intergenic 25.0%
! TCTCCTTATATCAAATTCTT+CGG - Chr3:32105018-32105037 None:intergenic 25.0%
! TTTACATCAAAAAAGTCTCA+TGG + Chr3:32106068-32106087 MsG0380013176.01.T01:intron 25.0%
!! TGAAAATCAGAAGTATAGTA+AGG + Chr3:32104710-32104729 MsG0380013176.01.T01:CDS 25.0%
!!! AAAAGTGCTATTTTCAAACT+TGG + Chr3:32105961-32105980 MsG0380013176.01.T01:intron 25.0%
!!! AAAGTGCTATTTTCAAACTT+GGG + Chr3:32105962-32105981 MsG0380013176.01.T01:intron 25.0%
!!! TGGTATTATCTTTGAAACAT+GGG - Chr3:32105177-32105196 None:intergenic 25.0%
!!! TTGGTATTATCTTTGAAACA+TGG - Chr3:32105178-32105197 None:intergenic 25.0%
AAACAACCTAGATGAAGTAT+TGG + Chr3:32105268-32105287 MsG0380013176.01.T01:intron 30.0%
AAATGGGAACAATTCATGTT+GGG + Chr3:32104913-32104932 MsG0380013176.01.T01:CDS 30.0%
AAGAAGATAGCTAGAAATAG+TGG + Chr3:32105503-32105522 MsG0380013176.01.T01:intron 30.0%
AATAACCATCTTGTTCATGT+CGG + Chr3:32104588-32104607 MsG0380013176.01.T01:CDS 30.0%
AATCTCAAGTTTGTGAAACT+TGG + Chr3:32105992-32106011 MsG0380013176.01.T01:intron 30.0%
AGCTAATGAGATATATAAGC+GGG + Chr3:32104686-32104705 MsG0380013176.01.T01:CDS 30.0%
AGTATGTTATACCAAAGAGA+GGG - Chr3:32105475-32105494 None:intergenic 30.0%
ATAGTATCAATATTGTGGAG+AGG - Chr3:32104627-32104646 None:intergenic 30.0%
ATCAATCCAATACTTCATCT+AGG - Chr3:32105277-32105296 None:intergenic 30.0%
ATCTCAAGTTTGTGAAACTT+GGG + Chr3:32105993-32106012 MsG0380013176.01.T01:intron 30.0%
GAATACATAGTGAAACAACT+AGG + Chr3:32104864-32104883 MsG0380013176.01.T01:CDS 30.0%
GAGCTAATGAGATATATAAG+CGG + Chr3:32104685-32104704 MsG0380013176.01.T01:CDS 30.0%
GCTTATATATCTCATTAGCT+CGG - Chr3:32104686-32104705 None:intergenic 30.0%
TAGTATCAATATTGTGGAGA+GGG - Chr3:32104626-32104645 None:intergenic 30.0%
TCTAGCTATCTTCTTAGTAA+GGG - Chr3:32105498-32105517 None:intergenic 30.0%
TCTAGGTTGTTTAATATCAC+CGG - Chr3:32105260-32105279 None:intergenic 30.0%
TCTCCACAATATTGATACTA+TGG + Chr3:32104626-32104645 MsG0380013176.01.T01:CDS 30.0%
TGAGTTATGAAGATTGAGTT+TGG + Chr3:32105693-32105712 MsG0380013176.01.T01:intron 30.0%
TTTCAAAGATAATACCAACC+TGG + Chr3:32105180-32105199 MsG0380013176.01.T01:CDS 30.0%
TTTGACTGAGTCAAAATCAA+GGG + Chr3:32105900-32105919 MsG0380013176.01.T01:intron 30.0%
! AAGATGGTTATTTCCAGATT+CGG - Chr3:32104580-32104599 None:intergenic 30.0%
! AGACGATTTTGTTCTAATCT+TGG + Chr3:32104945-32104964 MsG0380013176.01.T01:CDS 30.0%
! GTTTCACAAACTTGAGATTT+TGG - Chr3:32105991-32106010 None:intergenic 30.0%
! TTCTAGCTATCTTCTTAGTA+AGG - Chr3:32105499-32105518 None:intergenic 30.0%
!! GATTTTGAGGATGACAATTA+GGG + Chr3:32105738-32105757 MsG0380013176.01.T01:intron 30.0%
!! GGTATTATCTTTGAAACATG+GGG - Chr3:32105176-32105195 None:intergenic 30.0%
!! TGATTTTGAGGATGACAATT+AGG + Chr3:32105737-32105756 MsG0380013176.01.T01:intron 30.0%
!!! AAGTGCTATTTTCAAACTTG+GGG + Chr3:32105963-32105982 MsG0380013176.01.T01:intron 30.0%
AAACAACTAGGTTTGGAGAA+TGG + Chr3:32104876-32104895 MsG0380013176.01.T01:CDS 35.0%
AACCATTAGGAACTCATACA+AGG + Chr3:32105142-32105161 MsG0380013176.01.T01:CDS 35.0%
AAGAAATCAGGACGCATTAT+TGG + Chr3:32104734-32104753 MsG0380013176.01.T01:CDS 35.0%
AATGGGAACAATTCATGTTG+GGG + Chr3:32104914-32104933 MsG0380013176.01.T01:CDS 35.0%
ACTGTTGCAGCAATTGTTAT+TGG - Chr3:32105044-32105063 None:intergenic 35.0%
ATATTGATACTATGGCTGAG+AGG + Chr3:32104634-32104653 MsG0380013176.01.T01:CDS 35.0%
ATCCTTGTATGAGTTCCTAA+TGG - Chr3:32105147-32105166 None:intergenic 35.0%
CAGCCATAGTATCAATATTG+TGG - Chr3:32104632-32104651 None:intergenic 35.0%
CATAGTGAAACAACTAGGTT+TGG + Chr3:32104869-32104888 MsG0380013176.01.T01:CDS 35.0%
CTTTGACTGAGTCAAAATCA+AGG + Chr3:32105899-32105918 MsG0380013176.01.T01:intron 35.0%
GAAATGGGAACAATTCATGT+TGG + Chr3:32104912-32104931 MsG0380013176.01.T01:CDS 35.0%
GAGTATGTTATACCAAAGAG+AGG - Chr3:32105476-32105495 None:intergenic 35.0%
GGTTGTCAATCTGTAGAAAT+GGG + Chr3:32104897-32104916 MsG0380013176.01.T01:CDS 35.0%
GTATAGTAAGGCAAGAAATC+AGG + Chr3:32104722-32104741 MsG0380013176.01.T01:CDS 35.0%
TGCAAAGGGGTAAAACTTAA+GGG + Chr3:32105935-32105954 MsG0380013176.01.T01:intron 35.0%
TGGTTGTCAATCTGTAGAAA+TGG + Chr3:32104896-32104915 MsG0380013176.01.T01:CDS 35.0%
TTGACTGAGTCAAAATCAAG+GGG + Chr3:32105901-32105920 MsG0380013176.01.T01:intron 35.0%
TTGCAAAGGGGTAAAACTTA+AGG + Chr3:32105934-32105953 MsG0380013176.01.T01:intron 35.0%
! AGATAGATTTGAAACTTGGG+TGG - Chr3:32105630-32105649 None:intergenic 35.0%
! AGTAGGCTAAAATGCACTTT+TGG - Chr3:32106022-32106041 None:intergenic 35.0%
! GCGAGATAGATTTGAAACTT+GGG - Chr3:32105633-32105652 None:intergenic 35.0%
! TGCGAGATAGATTTGAAACT+TGG - Chr3:32105634-32105653 None:intergenic 35.0%
!! TTTTGTTTCAAGGGTTGCAT+AGG - Chr3:32105232-32105251 None:intergenic 35.0%
AATATTGTGGAGAGGGTTAC+TGG - Chr3:32104619-32104638 None:intergenic 40.0%
AATCGCAAGATGGTGAAACT+TGG - Chr3:32105603-32105622 None:intergenic 40.0%
ATATTGTGGAGAGGGTTACT+GGG - Chr3:32104618-32104637 None:intergenic 40.0%
ATCGCAAGATGGTGAAACTT+GGG - Chr3:32105602-32105621 None:intergenic 40.0%
CAAAGGGGTAAAACTTAAGG+GGG + Chr3:32105937-32105956 MsG0380013176.01.T01:intron 40.0%
CAATCTGCTTCTTTGCAACA+TGG + Chr3:32105667-32105686 MsG0380013176.01.T01:intron 40.0%
CCCTTGAAACAAAACAGTAC+CGG + Chr3:32105238-32105257 MsG0380013176.01.T01:intron 40.0%
GATAATACCAACCTGGTATG+CGG + Chr3:32105187-32105206 MsG0380013176.01.T01:intron 40.0%
GCAAAGGGGTAAAACTTAAG+GGG + Chr3:32105936-32105955 MsG0380013176.01.T01:intron 40.0%
GTTTCAATCAACCCTCTCTT+TGG + Chr3:32105461-32105480 MsG0380013176.01.T01:intron 40.0%
TCAAGTTTGTGAAACTTGGG+CGG + Chr3:32105996-32106015 MsG0380013176.01.T01:intron 40.0%
TGGCTTTCACTACCTCATAT+TGG + Chr3:32106088-32106107 MsG0380013176.01.T01:intron 40.0%
TTTACCCCTTTGCAAAACCA+TGG - Chr3:32105929-32105948 None:intergenic 40.0%
! GAAATTTGCTCGATTGCCAA+TGG + Chr3:32104810-32104829 MsG0380013176.01.T01:CDS 40.0%
! GTTTCACCATCTTGCGATTT+TGG + Chr3:32105604-32105623 MsG0380013176.01.T01:intron 40.0%
!!! ACCGGTACTGTTTTGTTTCA+AGG - Chr3:32105242-32105261 None:intergenic 40.0%
!!! CCGGTACTGTTTTGTTTCAA+GGG - Chr3:32105241-32105260 None:intergenic 40.0%
AACCATCTTGTTCATGTCGG+TGG + Chr3:32104591-32104610 MsG0380013176.01.T01:CDS 45.0%
CAAATTTCCTTTACCGTGCG+TGG - Chr3:32104798-32104817 None:intergenic 45.0%
CTCATTAGCTCGGTCCTTAA+TGG - Chr3:32104676-32104695 None:intergenic 45.0%
CTTGTCGACAAGCAATGTAG+AGG - Chr3:32104767-32104786 None:intergenic 45.0%
GAGTTGCAGAAGGAACCATT+AGG + Chr3:32105129-32105148 MsG0380013176.01.T01:CDS 45.0%
GATACTATGGCTGAGAGGTT+GGG + Chr3:32104639-32104658 MsG0380013176.01.T01:CDS 45.0%
GTTACTACAGGAGTTGCAGA+AGG + Chr3:32105119-32105138 MsG0380013176.01.T01:CDS 45.0%
TCAAGCTGTTAAAGCAGCTC+AGG + Chr3:32104977-32104996 MsG0380013176.01.T01:CDS 45.0%
TCGCAAGATGGTGAAACTTG+GGG - Chr3:32105601-32105620 None:intergenic 45.0%
TGACTCAGTCAAAGCTGATG+TGG - Chr3:32105893-32105912 None:intergenic 45.0%
TGATACTATGGCTGAGAGGT+TGG + Chr3:32104638-32104657 MsG0380013176.01.T01:CDS 45.0%
TTAGCTCGGTCCTTAATGGT+CGG - Chr3:32104672-32104691 None:intergenic 45.0%
!! GGGTACCATGGTTTTGCAAA+GGG + Chr3:32105921-32105940 MsG0380013176.01.T01:intron 45.0%
!! GGTACCATGGTTTTGCAAAG+GGG + Chr3:32105922-32105941 MsG0380013176.01.T01:intron 45.0%
!! GTCAAAATCAAGGGGTACCA+TGG + Chr3:32105909-32105928 MsG0380013176.01.T01:intron 45.0%
AACCTGGTATGCGGAAGAAG+AGG + Chr3:32105196-32105215 MsG0380013176.01.T01:intron 50.0%
ACAAGAAGACAAGCCACGCA+CGG + Chr3:32104782-32104801 MsG0380013176.01.T01:CDS 50.0%
ATCCTCTTCTTCCGCATACC+AGG - Chr3:32105201-32105220 None:intergenic 50.0%
CAAGATGGTGAAACTTGGGG+GGG - Chr3:32105598-32105617 None:intergenic 50.0%
CGAACTTTCGCTACCGAATC+TGG + Chr3:32104564-32104583 MsG0380013176.01.T01:CDS 50.0%
CGCAAGATGGTGAAACTTGG+GGG - Chr3:32105600-32105619 None:intergenic 50.0%
GACCACCGACATGAACAAGA+TGG - Chr3:32104596-32104615 None:intergenic 50.0%
GCAAGATGGTGAAACTTGGG+GGG - Chr3:32105599-32105618 None:intergenic 50.0%
GCGACCAATTTCCTTCTTCG+TGG - Chr3:32104838-32104857 None:intergenic 50.0%
GGAGCCACGAAGAAGGAAAT+TGG + Chr3:32104831-32104850 MsG0380013176.01.T01:CDS 50.0%
TCTTCTTCCGCATACCAGGT+TGG - Chr3:32105197-32105216 None:intergenic 50.0%
TTCCTTCTTCGTGGCTCCAT+TGG - Chr3:32104829-32104848 None:intergenic 50.0%
! AATGCAGTTTGCTCGGAGTG+TGG + Chr3:32104498-32104517 MsG0380013176.01.T01:CDS 50.0%
!! GGGGTACCATGGTTTTGCAA+AGG + Chr3:32105920-32105939 MsG0380013176.01.T01:intron 50.0%
!! TCGGAGTGTGGTCTTGTCTT+GGG + Chr3:32104510-32104529 MsG0380013176.01.T01:CDS 50.0%
AGACAAGCCACGCACGGTAA+AGG + Chr3:32104788-32104807 MsG0380013176.01.T01:CDS 55.0%
CCACTCGGAGGTTTCATCGA+TGG - Chr3:32104544-32104563 None:intergenic 55.0%
CCATCGATGAAACCTCCGAG+TGG + Chr3:32104541-32104560 MsG0380013176.01.T01:CDS 55.0%
CTCCGAGCAAACTGCATTGC+CGG - Chr3:32104496-32104515 None:intergenic 55.0%
GGGTGGCCAAAATCGCAAGA+TGG - Chr3:32105613-32105632 None:intergenic 55.0%
GGTAGCGAAAGTTCGCCACT+CGG - Chr3:32104559-32104578 None:intergenic 55.0%
GTGGTATTTGACCACTCCGC+CGG + Chr3:32104474-32104493 MsG0380013176.01.T01:CDS 55.0%
TATGGCTGAGAGGTTGGGAC+TGG + Chr3:32104644-32104663 MsG0380013176.01.T01:CDS 55.0%
TGCCAATGGAGCCACGAAGA+AGG + Chr3:32104824-32104843 MsG0380013176.01.T01:CDS 55.0%
!! CTCGGAGTGTGGTCTTGTCT+TGG + Chr3:32104509-32104528 MsG0380013176.01.T01:CDS 55.0%
!! GGGACTGGTTCCGACCATTA+AGG + Chr3:32104659-32104678 MsG0380013176.01.T01:CDS 55.0%
AAACTGCATTGCCGGCGGAG+TGG - Chr3:32104488-32104507 None:intergenic 60.0%
AGCGAAAGTTCGCCACTCGG+AGG - Chr3:32104556-32104575 None:intergenic 60.0%
CGAGCAAACTGCATTGCCGG+CGG - Chr3:32104493-32104512 None:intergenic 60.0%
! CGCCGGCAATGCAGTTTGCT+CGG + Chr3:32104491-32104510 MsG0380013176.01.T01:CDS 60.0%
CAGCGACTGCAAGCGAGCGA+CGG + Chr3:32104449-32104468 MsG0380013176.01.T01:CDS 65.0%
CTGCAAGCGAGCGACGGATG+TGG + Chr3:32104455-32104474 MsG0380013176.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 32104432 32106293 32104432 ID=MsG0380013176.01;Name=MsG0380013176.01
Chr3 mRNA 32104432 32106293 32104432 ID=MsG0380013176.01.T01;Parent=MsG0380013176.01;Name=MsG0380013176.01.T01;_AED=0.18;_eAED=0.48;_QI=0|0|0|0.75|1|1|4|0|256
Chr3 exon 32104432 32105201 32104432 ID=MsG0380013176.01.T01:exon:5875;Parent=MsG0380013176.01.T01
Chr3 exon 32106293 32106293 32106293 ID=MsG0380013176.01.T01:exon:5874;Parent=MsG0380013176.01.T01
Chr3 CDS 32104432 32105201 32104432 ID=MsG0380013176.01.T01:cds;Parent=MsG0380013176.01.T01
Chr3 CDS 32106293 32106293 32106293 ID=MsG0380013176.01.T01:cds;Parent=MsG0380013176.01.T01
Gene Sequence

>MsG0380013176.01.T01

ATGTCTGATACATTTTGCAGCGACTGCAAGCGAGCGACGGATGTGGTATTTGACCACTCCGCCGGCAATGCAGTTTGCTCGGAGTGTGGTCTTGTCTTGGGATTTCACTCCATCGATGAAACCTCCGAGTGGCGAACTTTCGCTACCGAATCTGGAAATAACCATCTTGTTCATGTCGGTGGTCCCAGTAACCCTCTCCACAATATTGATACTATGGCTGAGAGGTTGGGACTGGTTCCGACCATTAAGGACCGAGCTAATGAGATATATAAGCGGGTTGAAAATCAGAAGTATAGTAAGGCAAGAAATCAGGACGCATTATTGGCTGCTTGCCTCTACATTGCTTGTCGACAAGAAGACAAGCCACGCACGGTAAAGGAAATTTGCTCGATTGCCAATGGAGCCACGAAGAAGGAAATTGGTCGCGCAAAAGAATACATAGTGAAACAACTAGGTTTGGAGAATGGTTGTCAATCTGTAGAAATGGGAACAATTCATGTTGGGGACTTTATGAGACGATTTTGTTCTAATCTTGGTATGAATCATCAAGCTGTTAAAGCAGCTCAGGAATCTGTTCAGAAATCCGAAGAATTTGATATAAGGAGAAGTCCAATAACAATTGCTGCAACAGTTATATACATCATAACTCAGCTTTCAGATGACAAAAAATCCCTGAAAGATATATCAGTTACTACAGGAGTTGCAGAAGGAACCATTAGGAACTCATACAAGGATCTCTATCCCCATGTTTCAAAGATAATACCAACCTGA

Protein sequence

>MsG0380013176.01.T01

MSDTFCSDCKRATDVVFDHSAGNAVCSECGLVLGFHSIDETSEWRTFATESGNNHLVHVGGPSNPLHNIDTMAERLGLVPTIKDRANEIYKRVENQKYSKARNQDALLAACLYIACRQEDKPRTVKEICSIANGATKKEIGRAKEYIVKQLGLENGCQSVEMGTIHVGDFMRRFCSNLGMNHQAVKAAQESVQKSEEFDIRRSPITIAATVIYIITQLSDDKKSLKDISVTTGVAEGTIRNSYKDLYPHVSKIIPT*