AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027152.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027152.01.T01 MTR_5g055210 81.720 279 24 5 81 334 158 434 2.09e-150 432
MsG0580027152.01.T01 MTR_5g055210 81.720 279 24 5 81 334 236 512 3.41e-149 432
MsG0580027152.01.T01 MTR_5g055210 81.720 279 24 5 81 334 341 617 1.46e-148 434
MsG0580027152.01.T01 MTR_3g058500 33.702 181 95 4 130 285 386 566 3.53e-23 100
MsG0580027152.01.T01 MTR_2g026390 35.583 163 75 6 128 262 388 548 3.34e-19 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027152.01.T01 AT1G68580 36.458 288 139 13 81 334 226 503 1.05e-37 141
MsG0580027152.01.T01 AT1G68580 36.458 288 139 13 81 334 276 553 1.35e-37 142
MsG0580027152.01.T01 AT1G68580 36.458 288 139 13 81 334 322 599 2.01e-37 142
MsG0580027152.01.T01 AT1G68580 36.893 206 93 8 81 257 226 423 7.18e-29 115
MsG0580027152.01.T01 AT1G68580 36.893 206 93 8 81 257 322 519 1.37e-28 115
MsG0580027152.01.T01 AT5G55600 32.692 156 79 5 132 261 385 540 3.94e-19 89.0
MsG0580027152.01.T01 AT5G55600 32.692 156 79 5 132 261 385 540 3.94e-19 89.0
MsG0580027152.01.T01 AT5G55600 32.692 156 79 5 132 261 385 540 3.94e-19 89.0

Find 107 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCCCAGGTATGACCTTC+TGG 0.260691 5:-54834533 MsG0580027152.01.T01:intron
GGTGGTGGAAAGTTAGTTAA+AGG 0.275131 5:-54837850 MsG0580027152.01.T01:CDS
CTTGTTACCGCTACTGGTTT+TGG 0.298198 5:+54835077 None:intergenic
ACCTGTGGTACCTGATGATC+TGG 0.312493 5:-54834715 MsG0580027152.01.T01:CDS
CTCTAATAGTGGTCGGATCT+TGG 0.333952 5:+54834671 None:intergenic
GAGGTTGAAGGTGGTGGCTA+TGG 0.334136 5:-54837884 MsG0580027152.01.T01:CDS
CTCTTTGATTGTGGCCAACT+TGG 0.341106 5:+54835023 None:intergenic
AGCAGAAGACACAAAGAAAT+TGG 0.346715 5:-54838996 MsG0580027152.01.T01:CDS
CTCCAACTTGTTACCGCTAC+TGG 0.350555 5:+54835071 None:intergenic
TGAACAAGCCTGCTGGGTTT+AGG 0.362447 5:-54838963 MsG0580027152.01.T01:CDS
TTGGGCTTGAACAAGCCTGC+TGG 0.362598 5:-54838970 MsG0580027152.01.T01:CDS
TGCAGGGGCATTCTCGAGAT+TGG 0.372627 5:-54834416 MsG0580027152.01.T01:intron
AAATCAACTGTAGCATCTAT+TGG 0.374982 5:-54834287 MsG0580027152.01.T01:CDS
GTTGGAGGGTTCCGTAAAAC+TGG 0.383030 5:-54835055 MsG0580027152.01.T01:CDS
GGTGGAGGTTGAAAGTTGTT+AGG 0.386262 5:-54837927 MsG0580027152.01.T01:intron
TCTCAAGACAGTGGGATTAG+AGG 0.391666 5:-54834949 MsG0580027152.01.T01:CDS
AAAACATCCTTCACAAGATC+TGG 0.403992 5:+54834179 None:intergenic
TGAATGGATGGGTAAAGGTT+AGG 0.421605 5:-54834385 MsG0580027152.01.T01:CDS
TTTGATTGTGGCCAACTTGG+TGG 0.435610 5:+54835026 None:intergenic
AAATATCATGTTTATTTCCC+AGG 0.439067 5:-54834546 MsG0580027152.01.T01:CDS
ATTCCACGTTTCTCTAATAG+TGG 0.444960 5:+54834660 None:intergenic
GTGGAGGTTGAAAGTTGTTA+GGG 0.450054 5:-54837926 MsG0580027152.01.T01:intron
GTTGAAGGTGGTGGCTATGG+AGG 0.450538 5:-54837881 MsG0580027152.01.T01:CDS
TGGTTGGAGGTTGAAGGTGG+TGG 0.452477 5:-54837890 MsG0580027152.01.T01:CDS
GTGGCTATGGAGGTTAGTTA+TGG 0.452691 5:-54837871 MsG0580027152.01.T01:CDS
GAGTGGTGGTTGGAGGTTGA+AGG 0.454561 5:-54837896 MsG0580027152.01.T01:CDS
TGGGCTTGAACAAGCCTGCT+GGG 0.458393 5:-54838969 MsG0580027152.01.T01:CDS
GAATGGATGGGTAAAGGTTA+GGG 0.461000 5:-54834384 MsG0580027152.01.T01:CDS
ACACAAAGAAATTGGCAGTT+GGG 0.465042 5:-54838988 MsG0580027152.01.T01:CDS
TGGAAGAGAGTGGTGGTTGG+AGG 0.477275 5:-54837903 MsG0580027152.01.T01:CDS
GAGATTGGACAGGGAATGAA+TGG 0.477999 5:-54834401 MsG0580027152.01.T01:CDS
GCAATGCAAGTTACAACATC+AGG 0.480445 5:+54834356 None:intergenic
GCTGGGTTTAGGCAAAGAGC+TGG 0.487287 5:-54838952 MsG0580027152.01.T01:CDS
TTACTCGGGTTCTTCTGAAA+AGG 0.491451 5:-54834228 MsG0580027152.01.T01:CDS
TTGGACAGGGAATGAATGGA+TGG 0.492186 5:-54834397 MsG0580027152.01.T01:CDS
CAGGCAGGCTGATACTTACT+CGG 0.492218 5:-54834243 MsG0580027152.01.T01:CDS
GGAGCATATCCATGGGTTGT+GGG 0.494955 5:-54838917 MsG0580027152.01.T01:CDS
ACAGTGGGATTAGAGGTTGT+TGG 0.496594 5:-54834942 MsG0580027152.01.T01:CDS
AAGTTAGTTAAAGGTGAAGA+TGG 0.497713 5:-54837841 MsG0580027152.01.T01:CDS
TTGGTTACATTGTAGATGCC+TGG 0.498663 5:-54834620 MsG0580027152.01.T01:CDS
ACTCGGAGACCCAGATCATC+AGG 0.505580 5:+54834705 None:intergenic
TGGTGGTTGGAGGTTGAAGG+TGG 0.506483 5:-54837893 MsG0580027152.01.T01:CDS
GGTGCGGTAAACATGCAGAT+GGG 0.509887 5:-54839030 None:intergenic
GACACAAAGAAATTGGCAGT+TGG 0.518843 5:-54838989 MsG0580027152.01.T01:CDS
GGGAATGAATGGATGGGTAA+AGG 0.519382 5:-54834390 MsG0580027152.01.T01:CDS
GGGCATTCTCGAGATTGGAC+AGG 0.521929 5:-54834411 MsG0580027152.01.T01:CDS
GCTATGGAGGTTAGTTATGG+TGG 0.522946 5:-54837868 MsG0580027152.01.T01:CDS
TAAGACCAGAAGGTCATACC+TGG 0.525306 5:+54834528 None:intergenic
GGGTGCGGTAAACATGCAGA+TGG 0.525462 5:-54839031 None:intergenic
AAGAGCTGGGTCGGTTAGCA+TGG 0.529061 5:-54838938 MsG0580027152.01.T01:CDS
ATGGGTTGTGGGTGCAATTG+AGG 0.529946 5:-54838906 MsG0580027152.01.T01:intron
ATGGAATAATACAATCTAGC+AGG 0.531448 5:-54834262 MsG0580027152.01.T01:CDS
GGGTGGAAGAGAGTGGTGGT+TGG 0.533251 5:-54837906 MsG0580027152.01.T01:CDS
GTTGTTAGGGTGGAAGAGAG+TGG 0.536579 5:-54837913 MsG0580027152.01.T01:CDS
ACTGTAGCATCTATTGGAGA+TGG 0.537924 5:-54834281 MsG0580027152.01.T01:CDS
TGGCATGATGGATGGTGGGA+AGG 0.540826 5:-54834597 MsG0580027152.01.T01:CDS
GCTCTTTGCCTAAACCCAGC+AGG 0.541135 5:+54838955 None:intergenic
GCTTCACAGTATTTAGCTGT+AGG 0.541149 5:-54834991 MsG0580027152.01.T01:CDS
TTCGTTTGTCTCTTTGATTG+TGG 0.542530 5:+54835014 None:intergenic
GGTGGAAGTCATCAAGGAAG+AGG 0.543577 5:-54834142 MsG0580027152.01.T01:CDS
GTTAGCATGGAGCATATCCA+TGG 0.544905 5:-54838925 MsG0580027152.01.T01:CDS
CCACCATCCATCATGCCACC+AGG 0.546255 5:+54834602 None:intergenic
CACGTTTCTCTAATAGTGGT+CGG 0.547026 5:+54834664 None:intergenic
AGCTGTAGGCTCCAATGTTG+AGG 0.547702 5:-54834977 MsG0580027152.01.T01:CDS
CCCAGATCATCAGGTACCAC+AGG 0.548955 5:+54834714 None:intergenic
TCAATTGCACCCACAACCCA+TGG 0.551075 5:+54838908 None:intergenic
GTTAAAGGTGAAGATGGAGG+TGG 0.553855 5:-54837835 MsG0580027152.01.T01:intron
ATGCCTGGTGGCATGATGGA+TGG 0.558553 5:-54834605 MsG0580027152.01.T01:CDS
TGGAGCATATCCATGGGTTG+TGG 0.561699 5:-54838918 MsG0580027152.01.T01:CDS
TTGAGAGAGGACCTCAACAT+TGG 0.562408 5:+54834966 None:intergenic
AACCAGTAGCGGTAACAAGT+TGG 0.564560 5:-54835073 MsG0580027152.01.T01:CDS
CCTGGTGGCATGATGGATGG+TGG 0.564674 5:-54834602 MsG0580027152.01.T01:CDS
AGTTAAGGTGGAAGTCATCA+AGG 0.570861 5:-54834148 MsG0580027152.01.T01:CDS
ATGGAGGTTAGTTATGGTGG+TGG 0.572597 5:-54837865 MsG0580027152.01.T01:CDS
CTGGTGGCATGATGGATGGT+GGG 0.572784 5:-54834601 MsG0580027152.01.T01:CDS
GAGGTTGAAAGTTGTTAGGG+TGG 0.573532 5:-54837923 MsG0580027152.01.T01:CDS
GTGCGGTAAACATGCAGATG+GGG 0.574366 5:-54839029 None:intergenic
GAGGGTTCCGTAAAACTGGT+TGG 0.578848 5:-54835051 MsG0580027152.01.T01:CDS
CAGTAGCGGTAACAAGTTGG+AGG 0.586395 5:-54835070 MsG0580027152.01.T01:CDS
CTGGGTTTAGGCAAAGAGCT+GGG 0.587067 5:-54838951 MsG0580027152.01.T01:CDS
CCTGTGGTACCTGATGATCT+GGG 0.587162 5:-54834714 MsG0580027152.01.T01:CDS
TTAGAGCTTCTGTTATCAAG+AGG 0.589868 5:-54834918 MsG0580027152.01.T01:CDS
GGCATTCTCGAGATTGGACA+GGG 0.590250 5:-54834410 MsG0580027152.01.T01:CDS
TCTTGGTCCTCTCATCTACT+CGG 0.592590 5:+54834688 None:intergenic
GTTTAGGCAAAGAGCTGGGT+CGG 0.594106 5:-54838947 MsG0580027152.01.T01:CDS
AATAATACAATCTAGCAGGC+AGG 0.596444 5:-54834258 MsG0580027152.01.T01:CDS
AGGTCCTCTCTCAAGACAGT+GGG 0.596580 5:-54834957 MsG0580027152.01.T01:CDS
ACTGGTTGGAACCACCAAGT+TGG 0.604816 5:-54835037 MsG0580027152.01.T01:CDS
TGGACAGGGAATGAATGGAT+GGG 0.614760 5:-54834396 MsG0580027152.01.T01:CDS
TTAGTTAAAGGTGAAGATGG+AGG 0.617476 5:-54837838 MsG0580027152.01.T01:CDS
ACAAAGTTCCTGCAAATCTG+AGG 0.617490 5:-54834315 MsG0580027152.01.T01:CDS
AGGCAGGCTGATACTTACTC+GGG 0.619512 5:-54834242 MsG0580027152.01.T01:CDS
GTAGATGCCTGGTGGCATGA+TGG 0.629916 5:-54834609 MsG0580027152.01.T01:CDS
GAGGTCCTCTCTCAAGACAG+TGG 0.634450 5:-54834958 MsG0580027152.01.T01:CDS
GTTAGGGTGGAAGAGAGTGG+TGG 0.647289 5:-54837910 MsG0580027152.01.T01:CDS
TAATCCCACTGTCTTGAGAG+AGG 0.651285 5:+54834953 None:intergenic
TGGGTCTCCGAGTAGATGAG+AGG 0.656912 5:-54834695 MsG0580027152.01.T01:CDS
TTAGCATGGAGCATATCCAT+GGG 0.657614 5:-54838924 MsG0580027152.01.T01:CDS
ATTGATGCCAAAACCAGTAG+CGG 0.666078 5:-54835084 MsG0580027152.01.T01:CDS
CGACCACTATTAGAGAAACG+TGG 0.671099 5:-54834663 MsG0580027152.01.T01:CDS
GATGGGTAAAGGTTAGGGAA+AGG 0.672875 5:-54834379 MsG0580027152.01.T01:CDS
GGATAAACTTAGAAAGACTG+AGG 0.673810 5:-54834207 MsG0580027152.01.T01:CDS
GGAAGTTCCAGATCTTGTGA+AGG 0.675883 5:-54834186 MsG0580027152.01.T01:CDS
GAGGCACAAAGACAAAGTGA+AGG 0.676396 5:-54834899 MsG0580027152.01.T01:intron
AGTAGCGGTAACAAGTTGGA+GGG 0.678319 5:-54835069 MsG0580027152.01.T01:CDS
AAGACCAGAAGGTCATACCT+GGG 0.679492 5:+54834529 None:intergenic
GTTACATTGTAGATGCCTGG+TGG 0.694057 5:-54834617 MsG0580027152.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CACATATTTTAATTTTATTT+TGG + Chr5:54836998-54837017 None:intergenic 10.0%
!!! TTGTTTCATATTTTATATTA+GGG + Chr5:54836974-54836993 None:intergenic 10.0%
!!! TTTATATTTTTCATTAGTAT+TGG - Chr5:54838346-54838365 MsG0580027152.01.T01:intron 10.0%
!!! TTTTTTATTAATTTTCTTGA+AGG - Chr5:54838397-54838416 MsG0580027152.01.T01:intron 10.0%
!! AACGATTAAAAATAACAAAA+CGG - Chr5:54835672-54835691 MsG0580027152.01.T01:intron 15.0%
!! GGAAATAAAAAAAATATTGA+GGG + Chr5:54836813-54836832 None:intergenic 15.0%
!! TGGAAATAAAAAAAATATTG+AGG + Chr5:54836814-54836833 None:intergenic 15.0%
!! TTTACAAAATTCATAAAGAA+GGG + Chr5:54836092-54836111 None:intergenic 15.0%
!!! AAAAAAATTAGTTTTTTGGA+AGG + Chr5:54837975-54837994 None:intergenic 15.0%
!!! AATCTATATTTTAACATAAG+AGG + Chr5:54836718-54836737 None:intergenic 15.0%
!!! AGAAGTGTATATTTTAAAAT+AGG - Chr5:54837296-54837315 MsG0580027152.01.T01:intron 15.0%
!!! ATAAAACTTTTTTCTTTAAC+TGG - Chr5:54837850-54837869 MsG0580027152.01.T01:CDS 15.0%
!!! ATGAATTTATTTCTCTTAAA+TGG - Chr5:54837136-54837155 MsG0580027152.01.T01:intron 15.0%
!!! CAATTTTTCTAATTAGTTTT+TGG + Chr5:54838007-54838026 None:intergenic 15.0%
!!! GAAGTGTATATTTTAAAATA+GGG - Chr5:54837297-54837316 MsG0580027152.01.T01:intron 15.0%
!!! GTTGTTTCATATTTTATATT+AGG + Chr5:54836975-54836994 None:intergenic 15.0%
!!! TTTAAAATGGTTTTTTAACA+GGG - Chr5:54835816-54835835 MsG0580027152.01.T01:intron 15.0%
!!! TTTTAAAATGGTTTTTTAAC+AGG - Chr5:54835815-54835834 MsG0580027152.01.T01:intron 15.0%
!!! TTTTTTTTTTGCTAGATTAT+TGG + Chr5:54836834-54836853 None:intergenic 15.0%
!! AATGATTGATTATTAAGGAA+TGG - Chr5:54837222-54837241 MsG0580027152.01.T01:intron 20.0%
!! AATTAGAAAAATTGAGAGTT+AGG - Chr5:54838013-54838032 MsG0580027152.01.T01:intron 20.0%
!! ATGATTGATTATTAAGGAAT+GGG - Chr5:54837223-54837242 MsG0580027152.01.T01:intron 20.0%
!! GAAGGATTATAAAGAAATAA+AGG + Chr5:54837957-54837976 None:intergenic 20.0%
!! GTTTACAAAATTCATAAAGA+AGG + Chr5:54836093-54836112 None:intergenic 20.0%
!! TAGTGAATGATTGATTATTA+AGG - Chr5:54837217-54837236 MsG0580027152.01.T01:intron 20.0%
!!! AAATATGTTTTGAATAAGAG+AGG + Chr5:54836746-54836765 None:intergenic 20.0%
!!! AAATGCAAGAAAAAGTATTT+TGG - Chr5:54836173-54836192 MsG0580027152.01.T01:intron 20.0%
!!! AATGCAAGAAAAAGTATTTT+GGG - Chr5:54836174-54836193 MsG0580027152.01.T01:intron 20.0%
!!! AATTTATTTCTCTTAAATGG+TGG - Chr5:54837139-54837158 MsG0580027152.01.T01:intron 20.0%
!!! ATTTTGAAGTTAATATTTGC+AGG - Chr5:54838721-54838740 MsG0580027152.01.T01:intron 20.0%
!!! CCTGTGTTTTATATAATTAT+CGG - Chr5:54836539-54836558 MsG0580027152.01.T01:intron 20.0%
!!! TATTAATTTTCTTGAAGGAA+TGG - Chr5:54838402-54838421 MsG0580027152.01.T01:intron 20.0%
!!! TTTTGAAGTTAATATTTGCA+GGG - Chr5:54838722-54838741 MsG0580027152.01.T01:intron 20.0%
! AAACAAACTCGAAACTTAAA+AGG - Chr5:54837673-54837692 MsG0580027152.01.T01:intron 25.0%
! AAATATCATGTTTATTTCCC+AGG - Chr5:54838608-54838627 MsG0580027152.01.T01:intron 25.0%
! AAGTTTATATGGTTTCAGAT+AGG - Chr5:54837433-54837452 MsG0580027152.01.T01:intron 25.0%
! AATGAACAAACTACTAAATG+AGG - Chr5:54835700-54835719 MsG0580027152.01.T01:intron 25.0%
! AATTACACCCTCTTATTATT+TGG + Chr5:54837747-54837766 None:intergenic 25.0%
! ACTAAAATGAATTTGAATGC+AGG - Chr5:54836052-54836071 MsG0580027152.01.T01:intron 25.0%
! AGTGTAGAATTTAATACAAG+AGG + Chr5:54836785-54836804 None:intergenic 25.0%
! ATACAAATTATAAGACCAGA+AGG + Chr5:54838639-54838658 None:intergenic 25.0%
! CAATTTCATGTTGAAAAGAA+AGG - Chr5:54834976-54834995 MsG0580027152.01.T01:CDS 25.0%
! CCGATAATTATATAAAACAC+AGG + Chr5:54836542-54836561 None:intergenic 25.0%
! CTGAAACCATATAAACTTAA+AGG + Chr5:54837431-54837450 None:intergenic 25.0%
! CTTAACAAACATATCAACTT+TGG + Chr5:54837514-54837533 None:intergenic 25.0%
! GAAACAAACATGAAACTTAA+AGG + Chr5:54837340-54837359 None:intergenic 25.0%
! GAAACAAACTCAAAACTTAA+AGG + Chr5:54837460-54837479 None:intergenic 25.0%
! GATATAGAGAATGAAAGAAT+AGG + Chr5:54834332-54834351 None:intergenic 25.0%
! GATTTGATTGTTGAAAAGAA+TGG - Chr5:54834877-54834896 MsG0580027152.01.T01:intron 25.0%
! GTGTAGAATTTAATACAAGA+GGG + Chr5:54836784-54836803 None:intergenic 25.0%
! TGATTATATTAAAATGGACC+TGG + Chr5:54836889-54836908 None:intergenic 25.0%
! TGATTGATTATTAAGGAATG+GGG - Chr5:54837224-54837243 MsG0580027152.01.T01:intron 25.0%
! TGTAATTCAAACTTATCTCA+AGG - Chr5:54837760-54837779 MsG0580027152.01.T01:intron 25.0%
! TGTAGAATTTAATACAAGAG+GGG + Chr5:54836783-54836802 None:intergenic 25.0%
! TTTAGTCCTTGAAAATTGTT+GGG + Chr5:54836038-54836057 None:intergenic 25.0%
! TTTGATATGTGATTGAAACA+TGG - Chr5:54835988-54836007 MsG0580027152.01.T01:intron 25.0%
! TTTGTGGTCTTTGTAATATT+AGG - Chr5:54838688-54838707 MsG0580027152.01.T01:intron 25.0%
!! AGAATTGAGCTAGTATTTTT+AGG - Chr5:54836219-54836238 MsG0580027152.01.T01:intron 25.0%
!! ATAATGTTATACCCTGATTT+TGG + Chr5:54836246-54836265 None:intergenic 25.0%
!! ATAGATCCTTTAAGTTTCTA+AGG - Chr5:54837362-54837381 MsG0580027152.01.T01:intron 25.0%
!! ATAGGTCCTTTAAGTTTATA+TGG - Chr5:54837422-54837441 MsG0580027152.01.T01:intron 25.0%
!! ATGTTTTATCATTGCAGTTA+AGG - Chr5:54838991-54839010 MsG0580027152.01.T01:CDS 25.0%
!! TATGTCTTTTACTAGTTGTA+AGG - Chr5:54836588-54836607 MsG0580027152.01.T01:intron 25.0%
!! TTTGAAGTTAATATTTGCAG+GGG - Chr5:54838723-54838742 MsG0580027152.01.T01:intron 25.0%
!! TTTTAGTCCTTGAAAATTGT+TGG + Chr5:54836039-54836058 None:intergenic 25.0%
!! TTTTTCTGAGTGTTAAAACT+TGG + Chr5:54836484-54836503 None:intergenic 25.0%
!!! AAAGTTTGTTGGACTAAAAA+TGG - Chr5:54835556-54835575 MsG0580027152.01.T01:intron 25.0%
!!! AAGCTTTGTAAATGTTTTTG+TGG - Chr5:54838672-54838691 MsG0580027152.01.T01:intron 25.0%
!!! ATATTTTAACATAAGAGGAG+AGG + Chr5:54836713-54836732 None:intergenic 25.0%
!!! ATTAAACAGAGTTTTAACAC+AGG - Chr5:54835896-54835915 MsG0580027152.01.T01:intron 25.0%
!!! TATTTTAACATAAGAGGAGA+GGG + Chr5:54836712-54836731 None:intergenic 25.0%
!!! TATTTTTAGGTCCAAAATCA+GGG - Chr5:54836232-54836251 MsG0580027152.01.T01:intron 25.0%
!!! TCTCAGATGCAATTTTAAAA+TGG - Chr5:54835803-54835822 MsG0580027152.01.T01:intron 25.0%
!!! TTTAAGTTTCGAGTTTGTTT+CGG + Chr5:54837673-54837692 None:intergenic 25.0%
!!! TTTTTTATCCAATCTGTGAT+CGG + Chr5:54834611-54834630 None:intergenic 25.0%
AAATCAACTGTAGCATCTAT+TGG - Chr5:54838867-54838886 MsG0580027152.01.T01:intron 30.0%
AAATGACTAAAATGACCCTA+GGG - Chr5:54835919-54835938 MsG0580027152.01.T01:intron 30.0%
AACTAAAAGAAAAGACTCAG+AGG - Chr5:54835861-54835880 MsG0580027152.01.T01:intron 30.0%
AAGTTAGTTAAAGGTGAAGA+TGG - Chr5:54835313-54835332 MsG0580027152.01.T01:intron 30.0%
ATGGAATAATACAATCTAGC+AGG - Chr5:54838892-54838911 MsG0580027152.01.T01:intron 30.0%
ATTCAAACTTATCTCAAGGA+AGG - Chr5:54837764-54837783 MsG0580027152.01.T01:intron 30.0%
ATTCACACATCACCTATATA+AGG + Chr5:54835500-54835519 None:intergenic 30.0%
CAAAAAAACCGCATTTGATT+TGG + Chr5:54836353-54836372 None:intergenic 30.0%
CACAGATTGGATAAAAAAGA+GGG - Chr5:54834613-54834632 MsG0580027152.01.T01:CDS 30.0%
CTGAAACCTTAGAAACTTAA+AGG + Chr5:54837371-54837390 None:intergenic 30.0%
GAAAAAGATGCAATTGATCA+AGG - Chr5:54836132-54836151 MsG0580027152.01.T01:intron 30.0%
GACAAAACTACTTTGCTTAA+CGG - Chr5:54837626-54837645 MsG0580027152.01.T01:intron 30.0%
GATGATGAATATTGGTGAAT+TGG - Chr5:54835206-54835225 MsG0580027152.01.T01:intron 30.0%
TATCTGGCCAAATAATAAGA+GGG - Chr5:54837737-54837756 MsG0580027152.01.T01:intron 30.0%
TCAAATTCGATGTAAGACAA+AGG - Chr5:54834540-54834559 MsG0580027152.01.T01:CDS 30.0%
TCACAGATTGGATAAAAAAG+AGG - Chr5:54834612-54834631 MsG0580027152.01.T01:CDS 30.0%
TCGAAGAAAAATAGTATTCC+AGG - Chr5:54836868-54836887 MsG0580027152.01.T01:intron 30.0%
TGCAATTCAAGTATCTCATA+GGG - Chr5:54837248-54837267 MsG0580027152.01.T01:intron 30.0%
TGTTATGTGTTTAGATGTGA+GGG + Chr5:54834383-54834402 None:intergenic 30.0%
TTAGTTAGAAGAGAGAAAGT+GGG - Chr5:54835379-54835398 MsG0580027152.01.T01:intron 30.0%
TTCACACATCACCTATATAA+GGG + Chr5:54835499-54835518 None:intergenic 30.0%
TTGCAATTCAAGTATCTCAT+AGG - Chr5:54837247-54837266 MsG0580027152.01.T01:intron 30.0%
TTGGATAAAAAAGAGGGAAA+CGG - Chr5:54834619-54834638 MsG0580027152.01.T01:CDS 30.0%
! AAAAGACCCAACAATTTTCA+AGG - Chr5:54836029-54836048 MsG0580027152.01.T01:intron 30.0%
! AAACGTGGAATATCTTTTGT+GGG - Chr5:54838506-54838525 MsG0580027152.01.T01:intron 30.0%
! AATACGTTTGTTGAAGAAGA+AGG + Chr5:54834286-54834305 None:intergenic 30.0%
! AATTGTTGGGTCTTTTCAAT+TGG + Chr5:54836025-54836044 None:intergenic 30.0%
! ACATATCAACTTTGGCTTAA+CGG + Chr5:54837506-54837525 None:intergenic 30.0%
! ATACGTTTGTTGAAGAAGAA+GGG + Chr5:54834285-54834304 None:intergenic 30.0%
! TTGTTAAGCCATAGTTGATA+TGG - Chr5:54837526-54837545 MsG0580027152.01.T01:intron 30.0%
! TTTAGTCCAACAAACTTTTC+AGG + Chr5:54835554-54835573 None:intergenic 30.0%
! TTTTATCATTGCAGTTAAGG+TGG - Chr5:54838994-54839013 MsG0580027152.01.T01:CDS 30.0%
!! AAGTTTCTAAGGTTTCAGAT+AGG - Chr5:54837373-54837392 MsG0580027152.01.T01:intron 30.0%
!! ATGTTTTGAATAAGAGAGGA+GGG + Chr5:54836742-54836761 None:intergenic 30.0%
!! ATTGCGTTGATGATGAATAT+TGG - Chr5:54835198-54835217 MsG0580027152.01.T01:intron 30.0%
!! ATTTTAACATAAGAGGAGAG+GGG + Chr5:54836711-54836730 None:intergenic 30.0%
!! GAGGGGAGTATAATTTTAAA+GGG - Chr5:54837271-54837290 MsG0580027152.01.T01:intron 30.0%
!! TATGTTTTGAATAAGAGAGG+AGG + Chr5:54836743-54836762 None:intergenic 30.0%
!! TGAATTGTGTTGGCTTTATA+TGG + Chr5:54836512-54836531 None:intergenic 30.0%
!!! GTATTTTTAGGTCCAAAATC+AGG - Chr5:54836231-54836250 MsG0580027152.01.T01:intron 30.0%
!!! GTTTTGAGTTTGTTTCAGAT+AGG - Chr5:54837404-54837423 MsG0580027152.01.T01:intron 30.0%
!!! TTTTTTTGCTGTTTCGGTTT+GGG - Chr5:54836365-54836384 MsG0580027152.01.T01:intron 30.0%
AAAACATCCTTCACAAGATC+TGG + Chr5:54838978-54838997 None:intergenic 35.0%
AAAACTACTTTGCTTAACGG+AGG - Chr5:54837629-54837648 MsG0580027152.01.T01:intron 35.0%
AACGTGAAACTTAAAGATCC+AGG - Chr5:54837710-54837729 MsG0580027152.01.T01:intron 35.0%
AAGCTCTTAACAACACAACT+CGG + Chr5:54834754-54834773 None:intergenic 35.0%
AATAATACAATCTAGCAGGC+AGG - Chr5:54838896-54838915 MsG0580027152.01.T01:intron 35.0%
AATGACTAAAATGACCCTAG+GGG - Chr5:54835920-54835939 MsG0580027152.01.T01:intron 35.0%
ACACAAAGAAATTGGCAGTT+GGG - Chr5:54834166-54834185 MsG0580027152.01.T01:CDS 35.0%
ACCAATAGGATAAAGACATG+TGG - Chr5:54835526-54835545 MsG0580027152.01.T01:intron 35.0%
AGAGTTTCGAATCGGAAAAA+GGG + Chr5:54834808-54834827 None:intergenic 35.0%
AGCAGAAGACACAAAGAAAT+TGG - Chr5:54834158-54834177 MsG0580027152.01.T01:CDS 35.0%
AGGAAGAAGTTGAATTGTGT+TGG + Chr5:54836522-54836541 None:intergenic 35.0%
AGGCAAATAACAAAGCTCTA+AGG - Chr5:54835585-54835604 MsG0580027152.01.T01:intron 35.0%
ATTCCACGTTTCTCTAATAG+TGG + Chr5:54838497-54838516 None:intergenic 35.0%
ATTCTGACATAGAGTCTGAA+TGG + Chr5:54836441-54836460 None:intergenic 35.0%
CGTTTCAGAATTGTAGACTT+CGG - Chr5:54835089-54835108 MsG0580027152.01.T01:CDS 35.0%
GAAATGACTAAAATGACCCT+AGG - Chr5:54835918-54835937 MsG0580027152.01.T01:intron 35.0%
GAGTACATCCAAATCAAATG+CGG - Chr5:54836342-54836361 MsG0580027152.01.T01:intron 35.0%
GATGAATATTGGTGAATTGG+TGG - Chr5:54835209-54835228 MsG0580027152.01.T01:intron 35.0%
GCAATTCAAGTATCTCATAG+GGG - Chr5:54837249-54837268 MsG0580027152.01.T01:intron 35.0%
GGATAAACTTAGAAAGACTG+AGG - Chr5:54838947-54838966 MsG0580027152.01.T01:CDS 35.0%
GGATGAAGCTATAAAACTTG+AGG - Chr5:54838308-54838327 MsG0580027152.01.T01:intron 35.0%
GTATCTGGCCAAATAATAAG+AGG - Chr5:54837736-54837755 MsG0580027152.01.T01:intron 35.0%
GTGTTATGTGTTTAGATGTG+AGG + Chr5:54834384-54834403 None:intergenic 35.0%
GTTAGTTAGAAGAGAGAAAG+TGG - Chr5:54835378-54835397 MsG0580027152.01.T01:intron 35.0%
GTTTCACGTTTGTTTCAGAT+AGG + Chr5:54837700-54837719 None:intergenic 35.0%
GTTTCCCATCTTGAATTCAT+CGG + Chr5:54834672-54834691 None:intergenic 35.0%
TCACACATCACCTATATAAG+GGG + Chr5:54835498-54835517 None:intergenic 35.0%
TGAAACTTAAAGATCCAGGA+AGG - Chr5:54837714-54837733 MsG0580027152.01.T01:intron 35.0%
TGGACTAAAAATGGACCAAA+AGG - Chr5:54835565-54835584 MsG0580027152.01.T01:intron 35.0%
TGTAATTCAAGCACCTTTGA+GGG + Chr5:54836686-54836705 None:intergenic 35.0%
TTAGAGCTTCTGTTATCAAG+AGG - Chr5:54838236-54838255 MsG0580027152.01.T01:intron 35.0%
TTAGTTAAAGGTGAAGATGG+AGG - Chr5:54835316-54835335 MsG0580027152.01.T01:intron 35.0%
TTCGTTTGTCTCTTTGATTG+TGG + Chr5:54838143-54838162 None:intergenic 35.0%
TTCTGACATAGAGTCTGAAT+GGG + Chr5:54836440-54836459 None:intergenic 35.0%
! AAGCCATAGTTGATATGGTT+GGG - Chr5:54837531-54837550 MsG0580027152.01.T01:intron 35.0%
! ACATATCAGCTTTGGCTTAA+CGG - Chr5:54837604-54837623 MsG0580027152.01.T01:intron 35.0%
! ATATCTTTTGTGGGTGATGT+TGG - Chr5:54838515-54838534 MsG0580027152.01.T01:intron 35.0%
! CGAAGTCTACAATTCTGAAA+CGG + Chr5:54835091-54835110 None:intergenic 35.0%
! GAAACGTGGAATATCTTTTG+TGG - Chr5:54838505-54838524 MsG0580027152.01.T01:intron 35.0%
! GAGTATTGTTGCGAATTTGA+AGG - Chr5:54835147-54835166 MsG0580027152.01.T01:intron 35.0%
! TAAGCCATAGTTGATATGGT+TGG - Chr5:54837530-54837549 MsG0580027152.01.T01:intron 35.0%
! TGTGACAAACGATTCTGAAA+CGG + Chr5:54834958-54834977 None:intergenic 35.0%
! TTGTGGTTTTTCTATTGGAC+TGG - Chr5:54836398-54836417 MsG0580027152.01.T01:intron 35.0%
!! GCATTTGATTTGGATGTACT+CGG + Chr5:54836343-54836362 None:intergenic 35.0%
!! GGAGGGGAGTATAATTTTAA+AGG - Chr5:54837270-54837289 MsG0580027152.01.T01:intron 35.0%
!! TCGGTTTGTGGTTTTTCTAT+TGG - Chr5:54836393-54836412 MsG0580027152.01.T01:intron 35.0%
!! TTGAGTCATTTTAGTCCCTA+GGG + Chr5:54835779-54835798 None:intergenic 35.0%
!! TTTGAGTCATTTTAGTCCCT+AGG + Chr5:54835780-54835799 None:intergenic 35.0%
!!! ATGCGGTTTTTTTGCTGTTT+CGG - Chr5:54836359-54836378 MsG0580027152.01.T01:intron 35.0%
!!! GAATCCGTTTTAGAATCGTT+TGG - Chr5:54834903-54834922 MsG0580027152.01.T01:CDS 35.0%
!!! GAGCTTTGTTATTTGCCTTT+TGG + Chr5:54835583-54835602 None:intergenic 35.0%
!!! GTTTTTTTGCTGTTTCGGTT+TGG - Chr5:54836364-54836383 MsG0580027152.01.T01:intron 35.0%
AAATAGGGCAAATACCTCCT+CGG - Chr5:54837312-54837331 MsG0580027152.01.T01:intron 40.0%
AAATGACCAAAATGCCCCTA+GGG - Chr5:54835761-54835780 MsG0580027152.01.T01:intron 40.0%
AACGGAATCTTGAGCAAATC+CGG + Chr5:54834847-54834866 None:intergenic 40.0%
AAGCTGATATGTCCGTTAAG+TGG + Chr5:54837596-54837615 None:intergenic 40.0%
AATCTGCATACCTCAGATTC+TGG - Chr5:54836458-54836477 MsG0580027152.01.T01:intron 40.0%
ACAAAGTTCCTGCAAATCTG+AGG - Chr5:54838839-54838858 MsG0580027152.01.T01:intron 40.0%
ACTGTAGCATCTATTGGAGA+TGG - Chr5:54838873-54838892 MsG0580027152.01.T01:intron 40.0%
AGCTGATATGTCCGTTAAGT+GGG + Chr5:54837595-54837614 None:intergenic 40.0%
AGTTAAGGTGGAAGTCATCA+AGG - Chr5:54839006-54839025 MsG0580027152.01.T01:CDS 40.0%
ATAGGTGATGTGTGAATTGC+TGG - Chr5:54835503-54835522 MsG0580027152.01.T01:intron 40.0%
ATCAAATCGCAGCAAGGAAA+CGG + Chr5:54834865-54834884 None:intergenic 40.0%
ATTCAAGTATCTCATAGGGG+AGG - Chr5:54837252-54837271 MsG0580027152.01.T01:intron 40.0%
ATTGATGCCAAAACCAGTAG+CGG - Chr5:54838070-54838089 MsG0580027152.01.T01:intron 40.0%
CACACATCACCTATATAAGG+GGG + Chr5:54835497-54835516 None:intergenic 40.0%
CACGTTTCTCTAATAGTGGT+CGG + Chr5:54838493-54838512 None:intergenic 40.0%
GAATATTGGTGAATTGGTGG+AGG - Chr5:54835212-54835231 MsG0580027152.01.T01:intron 40.0%
GAATGGATGGGTAAAGGTTA+GGG - Chr5:54838770-54838789 MsG0580027152.01.T01:intron 40.0%
GACACAAAGAAATTGGCAGT+TGG - Chr5:54834165-54834184 MsG0580027152.01.T01:CDS 40.0%
GAGAGTTTCGAATCGGAAAA+AGG + Chr5:54834809-54834828 None:intergenic 40.0%
GCAATGCAAGTTACAACATC+AGG + Chr5:54838801-54838820 None:intergenic 40.0%
GCCACATGTCTTTATCCTAT+TGG + Chr5:54835530-54835549 None:intergenic 40.0%
GCGAATTTGAAGGATAGTGA+CGG - Chr5:54835157-54835176 MsG0580027152.01.T01:intron 40.0%
GCTTCACAGTATTTAGCTGT+AGG - Chr5:54838163-54838182 MsG0580027152.01.T01:intron 40.0%
GTGGAGGTTGAAAGTTGTTA+GGG - Chr5:54835228-54835247 MsG0580027152.01.T01:intron 40.0%
GTGTAATTCAAGCACCTTTG+AGG + Chr5:54836687-54836706 None:intergenic 40.0%
TAAAACTTGGCCAGAATCTG+AGG + Chr5:54836471-54836490 None:intergenic 40.0%
TATAACATTATGCCGCGGTT+TGG - Chr5:54836255-54836274 MsG0580027152.01.T01:intron 40.0%
TCAACAATCAAATCGCAGCA+AGG + Chr5:54834871-54834890 None:intergenic 40.0%
TCTGACATAGAGTCTGAATG+GGG + Chr5:54836439-54836458 None:intergenic 40.0%
TGAATGGATGGGTAAAGGTT+AGG - Chr5:54838769-54838788 MsG0580027152.01.T01:intron 40.0%
TGATGACTCAACTGAGTTGT+TGG - Chr5:54834728-54834747 MsG0580027152.01.T01:CDS 40.0%
TGCAAAATATCACGACATCC+AGG - Chr5:54838278-54838297 MsG0580027152.01.T01:intron 40.0%
TGTCACAATTTCAGTCCGTT+TGG - Chr5:54835022-54835041 MsG0580027152.01.T01:CDS 40.0%
TTAGAAGAGAGAAAGTGGGA+GGG - Chr5:54835383-54835402 MsG0580027152.01.T01:intron 40.0%
TTAGCATGGAGCATATCCAT+GGG - Chr5:54834230-54834249 MsG0580027152.01.T01:CDS 40.0%
TTCAAGTATCTCATAGGGGA+GGG - Chr5:54837253-54837272 MsG0580027152.01.T01:intron 40.0%
TTCCCCAACCATATCAACTA+TGG + Chr5:54837537-54837556 None:intergenic 40.0%
TTGGTTACATTGTAGATGCC+TGG - Chr5:54838534-54838553 MsG0580027152.01.T01:intron 40.0%
! AAGACTCAGAGGCAAGTTTT+AGG - Chr5:54835872-54835891 MsG0580027152.01.T01:intron 40.0%
! AGACTCAGAGGCAAGTTTTA+GGG - Chr5:54835873-54835892 MsG0580027152.01.T01:intron 40.0%
! AGCCATAGTTGATATGGTTG+GGG - Chr5:54837532-54837551 MsG0580027152.01.T01:intron 40.0%
! CGAGCCAAACGATTCTAAAA+CGG + Chr5:54834910-54834929 None:intergenic 40.0%
! CTTAACGGACATATCAGCTT+TGG - Chr5:54837596-54837615 MsG0580027152.01.T01:intron 40.0%
! TATCAACTTTGGCTTAACGG+AGG + Chr5:54837503-54837522 None:intergenic 40.0%
! TTACTCGGGTTCTTCTGAAA+AGG - Chr5:54838926-54838945 MsG0580027152.01.T01:CDS 40.0%
! TTGAAGGATAGTGACGGTTT+TGG - Chr5:54835163-54835182 MsG0580027152.01.T01:intron 40.0%
! TTTTCTGTCCTCAGATTTGC+AGG + Chr5:54838850-54838869 None:intergenic 40.0%
!! CATGGAGTTTTGACAGAAAG+AGG + Chr5:54835739-54835758 None:intergenic 40.0%
!! GAGGTGGTTAGAGTTTGTTA+TGG - Chr5:54835335-54835354 MsG0580027152.01.T01:intron 40.0%
!! GGCATTTTGGTCATTTCACA+TGG + Chr5:54835757-54835776 None:intergenic 40.0%
!! GGTGGTGGAAAGTTAGTTAA+AGG - Chr5:54835304-54835323 MsG0580027152.01.T01:intron 40.0%
!! GTGGTTAGAGTTTGTTATGG+TGG - Chr5:54835338-54835357 MsG0580027152.01.T01:intron 40.0%
!! GTTAGAGTTTGTTATGGTGG+AGG - Chr5:54835341-54835360 MsG0580027152.01.T01:intron 40.0%
!! TAAAGATCCAGGAAGGTATC+TGG - Chr5:54837721-54837740 MsG0580027152.01.T01:intron 40.0%
!! TGAGTCATTTTAGTCCCTAG+GGG + Chr5:54835778-54835797 None:intergenic 40.0%
!! TGTTTCGGTTTGGGTTGATT+CGG - Chr5:54836374-54836393 MsG0580027152.01.T01:intron 40.0%
!! TTGTTGACTCTTTGACCCAT+GGG - Chr5:54835471-54835490 MsG0580027152.01.T01:intron 40.0%
!! TTTTCCGATTCGAAACTCTC+TGG - Chr5:54834809-54834828 MsG0580027152.01.T01:intron 40.0%
!!! GATTTTAGCTTCTAGACCTG+TGG - Chr5:54838424-54838443 MsG0580027152.01.T01:intron 40.0%
AAAAAGGGAGAAGAGTCCGA+GGG + Chr5:54834793-54834812 None:intergenic 45.0%
AACCAGTAGCGGTAACAAGT+TGG - Chr5:54838081-54838100 MsG0580027152.01.T01:intron 45.0%
AAGACCAGAAGGTCATACCT+GGG + Chr5:54838628-54838647 None:intergenic 45.0%
AATAGGGCAAATACCTCCTC+GGG - Chr5:54837313-54837332 MsG0580027152.01.T01:intron 45.0%
ACAGTGGGATTAGAGGTTGT+TGG - Chr5:54838212-54838231 MsG0580027152.01.T01:intron 45.0%
ATATGTCCGTTAAGTGGGTG+AGG + Chr5:54837590-54837609 None:intergenic 45.0%
ATTTCCCAGGTATGACCTTC+TGG - Chr5:54838621-54838640 MsG0580027152.01.T01:intron 45.0%
CAGGGTATAACATTATGCCG+CGG - Chr5:54836250-54836269 MsG0580027152.01.T01:intron 45.0%
CATGAAACTTAAAGGACCCG+AGG + Chr5:54837332-54837351 None:intergenic 45.0%
CGAATCAAAACCACAACCCT+CGG - Chr5:54834774-54834793 MsG0580027152.01.T01:intron 45.0%
CGACCACTATTAGAGAAACG+TGG - Chr5:54838491-54838510 MsG0580027152.01.T01:intron 45.0%
CGATCTGACTCTGATTGACT+TGG - Chr5:54834704-54834723 MsG0580027152.01.T01:CDS 45.0%
CTACAACACCGATCACAGAT+TGG - Chr5:54834600-54834619 MsG0580027152.01.T01:CDS 45.0%
CTCTAATAGTGGTCGGATCT+TGG + Chr5:54838486-54838505 None:intergenic 45.0%
CTGACATAGAGTCTGAATGG+GGG + Chr5:54836438-54836457 None:intergenic 45.0%
CTTAACGGAGGTTGACAGAA+AGG - Chr5:54837641-54837660 MsG0580027152.01.T01:intron 45.0%
GAAATGACCAAAATGCCCCT+AGG - Chr5:54835760-54835779 MsG0580027152.01.T01:intron 45.0%
GAGATTGGACAGGGAATGAA+TGG - Chr5:54838753-54838772 MsG0580027152.01.T01:intron 45.0%
GAGGCACAAAGACAAAGTGA+AGG - Chr5:54838255-54838274 MsG0580027152.01.T01:intron 45.0%
GAGGCCGATGAATTCAAGAT+GGG - Chr5:54834665-54834684 MsG0580027152.01.T01:CDS 45.0%
GAGGTTGAAAGTTGTTAGGG+TGG - Chr5:54835231-54835250 MsG0580027152.01.T01:intron 45.0%
GATGGGTAAAGGTTAGGGAA+AGG - Chr5:54838775-54838794 MsG0580027152.01.T01:intron 45.0%
GGAAGTTCCAGATCTTGTGA+AGG - Chr5:54838968-54838987 MsG0580027152.01.T01:CDS 45.0%
GGGAATGAATGGATGGGTAA+AGG - Chr5:54838764-54838783 MsG0580027152.01.T01:intron 45.0%
GGTGGAGGTTGAAAGTTGTT+AGG - Chr5:54835227-54835246 MsG0580027152.01.T01:intron 45.0%
GTGAATGAAGGTTTGATGCG+TGG - Chr5:54835057-54835076 MsG0580027152.01.T01:CDS 45.0%
GTGGCACCTGAAAAGTTTGT+TGG - Chr5:54835545-54835564 MsG0580027152.01.T01:intron 45.0%
GTGTGAATTGCTGGACCAAT+AGG - Chr5:54835512-54835531 MsG0580027152.01.T01:intron 45.0%
GTGTTGTAGTTGTGTGTTGC+TGG + Chr5:54834589-54834608 None:intergenic 45.0%
GTTAAAGGTGAAGATGGAGG+TGG - Chr5:54835319-54835338 MsG0580027152.01.T01:intron 45.0%
GTTACATTGTAGATGCCTGG+TGG - Chr5:54838537-54838556 MsG0580027152.01.T01:intron 45.0%
GTTAGAAGAGAGAAAGTGGG+AGG - Chr5:54835382-54835401 MsG0580027152.01.T01:intron 45.0%
GTTAGCATGGAGCATATCCA+TGG - Chr5:54834229-54834248 MsG0580027152.01.T01:CDS 45.0%
TAAGACCAGAAGGTCATACC+TGG + Chr5:54838629-54838648 None:intergenic 45.0%
TAATCCCACTGTCTTGAGAG+AGG + Chr5:54838204-54838223 None:intergenic 45.0%
TATTTGGCCAGATACCTTCC+TGG + Chr5:54837731-54837750 None:intergenic 45.0%
TCAAGTATCTCATAGGGGAG+GGG - Chr5:54837254-54837273 MsG0580027152.01.T01:intron 45.0%
TCTCAAGACAGTGGGATTAG+AGG - Chr5:54838205-54838224 MsG0580027152.01.T01:intron 45.0%
TCTTGGTCCTCTCATCTACT+CGG + Chr5:54838469-54838488 None:intergenic 45.0%
TGGACAGGGAATGAATGGAT+GGG - Chr5:54838758-54838777 MsG0580027152.01.T01:intron 45.0%
TTATCAACCGAACCAAACCG+CGG + Chr5:54836270-54836289 None:intergenic 45.0%
TTGAGAGAGGACCTCAACAT+TGG + Chr5:54838191-54838210 None:intergenic 45.0%
TTGAGTCAGTTTAGCCCCTA+GGG + Chr5:54835937-54835956 None:intergenic 45.0%
TTGGACAGGGAATGAATGGA+TGG - Chr5:54838757-54838776 MsG0580027152.01.T01:intron 45.0%
TTTGAGTCAGTTTAGCCCCT+AGG + Chr5:54835938-54835957 None:intergenic 45.0%
! AGTAGCGGTAACAAGTTGGA+GGG - Chr5:54838085-54838104 MsG0580027152.01.T01:intron 45.0%
! ATGGAGGTTAGTTATGGTGG+TGG - Chr5:54835289-54835308 MsG0580027152.01.T01:intron 45.0%
! ATTCAAGCACCTTTGAGGGA+AGG + Chr5:54836682-54836701 None:intergenic 45.0%
! GATACCTGAGTTGAAGACAG+AGG - Chr5:54834643-54834662 MsG0580027152.01.T01:CDS 45.0%
! GCTATGGAGGTTAGTTATGG+TGG - Chr5:54835286-54835305 MsG0580027152.01.T01:intron 45.0%
! GGTGGTTCCAACCAGTTTTA+CGG + Chr5:54838113-54838132 None:intergenic 45.0%
! GTGGCTATGGAGGTTAGTTA+TGG - Chr5:54835283-54835302 MsG0580027152.01.T01:intron 45.0%
! TTCAAGCACCTTTGAGGGAA+GGG + Chr5:54836681-54836700 None:intergenic 45.0%
!! CTCGCTGATTCAGTGAATGA+AGG - Chr5:54835045-54835064 MsG0580027152.01.T01:CDS 45.0%
!! GTTGTTGACTCTTTGACCCA+TGG - Chr5:54835470-54835489 MsG0580027152.01.T01:intron 45.0%
!! GTTTGGGTTGATTCGGTTTG+TGG - Chr5:54836381-54836400 MsG0580027152.01.T01:intron 45.0%
!! GTTTGTTATGGTGGAGGAAG+TGG - Chr5:54835347-54835366 MsG0580027152.01.T01:intron 45.0%
!!! CTTGTTACCGCTACTGGTTT+TGG + Chr5:54838080-54838099 None:intergenic 45.0%
!!! TTTAGTCCCTAGGGGCATTT+TGG + Chr5:54835770-54835789 None:intergenic 45.0%
!!! AAATTTTGATTATATTAAAA+TGG + Chr5:54836895-54836914 None:intergenic 5.0%
!!! ACATATTTTAATTTTATTTT+GGG + Chr5:54836997-54837016 None:intergenic 5.0%
!!! TAAAAAAAAAATTAGTTTTT+TGG + Chr5:54837979-54837998 None:intergenic 5.0%
!!! TTGTTATTAATTTTATAATA+TGG + Chr5:54837073-54837092 None:intergenic 5.0%
ACCTATATAAGGGGGCCCAT+GGG + Chr5:54835489-54835508 None:intergenic 50.0%
ACCTGTGGTACCTGATGATC+TGG - Chr5:54838439-54838458 MsG0580027152.01.T01:intron 50.0%
AGCTGTAGGCTCCAATGTTG+AGG - Chr5:54838177-54838196 MsG0580027152.01.T01:intron 50.0%
AGGCAGGCTGATACTTACTC+GGG - Chr5:54838912-54838931 MsG0580027152.01.T01:CDS 50.0%
AGGTCCTCTCTCAAGACAGT+GGG - Chr5:54838197-54838216 MsG0580027152.01.T01:intron 50.0%
AGGTGGTTCTCTCTGACACT+TGG + Chr5:54837570-54837589 None:intergenic 50.0%
CACTGAATCAGCGAGCCAAA+CGG + Chr5:54834921-54834940 None:intergenic 50.0%
CAGGCAGGCTGATACTTACT+CGG - Chr5:54838911-54838930 MsG0580027152.01.T01:CDS 50.0%
CCTGTGGTACCTGATGATCT+GGG - Chr5:54838440-54838459 MsG0580027152.01.T01:intron 50.0%
CTGGGTTTAGGCAAAGAGCT+GGG - Chr5:54834203-54834222 MsG0580027152.01.T01:CDS 50.0%
GAAAAAGGGAGAAGAGTCCG+AGG + Chr5:54834794-54834813 None:intergenic 50.0%
GAAACTTAAAGGACCCGAGG+AGG + Chr5:54837329-54837348 None:intergenic 50.0%
GAACCACCTCACCCACTTAA+CGG - Chr5:54837581-54837600 MsG0580027152.01.T01:intron 50.0%
GAGGGTTCCGTAAAACTGGT+TGG - Chr5:54838103-54838122 MsG0580027152.01.T01:intron 50.0%
GCAAACCGAACCAAACCATG+CGG - Chr5:54836300-54836319 MsG0580027152.01.T01:intron 50.0%
GCAGCCAGAGAGTTTCGAAT+CGG + Chr5:54834816-54834835 None:intergenic 50.0%
GGAGGCCGATGAATTCAAGA+TGG - Chr5:54834664-54834683 MsG0580027152.01.T01:CDS 50.0%
GGCATTCTCGAGATTGGACA+GGG - Chr5:54838744-54838763 MsG0580027152.01.T01:intron 50.0%
GGTGGAAGTCATCAAGGAAG+AGG - Chr5:54839012-54839031 MsG0580027152.01.T01:CDS 50.0%
GTTGGAGGGTTCCGTAAAAC+TGG - Chr5:54838099-54838118 MsG0580027152.01.T01:intron 50.0%
GTTGTGGGTGCAATTGAGGT+AGG - Chr5:54834252-54834271 MsG0580027152.01.T01:CDS 50.0%
GTTGTTAGGGTGGAAGAGAG+TGG - Chr5:54835241-54835260 MsG0580027152.01.T01:intron 50.0%
GTTTAGGCAAAGAGCTGGGT+CGG - Chr5:54834207-54834226 MsG0580027152.01.T01:CDS 50.0%
TAGCTTCATCCACTGCATCC+TGG + Chr5:54838299-54838318 None:intergenic 50.0%
TCAATTGCACCCACAACCCA+TGG + Chr5:54834249-54834268 None:intergenic 50.0%
TGAACAAGCCTGCTGGGTTT+AGG - Chr5:54834191-54834210 MsG0580027152.01.T01:CDS 50.0%
TTACTCTCCCCTTCCCTCAA+AGG - Chr5:54836670-54836689 MsG0580027152.01.T01:intron 50.0%
! ACCTGAGTTGAAGACAGAGG+AGG - Chr5:54834646-54834665 MsG0580027152.01.T01:CDS 50.0%
! ATGGGTTGTGGGTGCAATTG+AGG - Chr5:54834248-54834267 MsG0580027152.01.T01:CDS 50.0%
! CAGTAGCGGTAACAAGTTGG+AGG - Chr5:54838084-54838103 MsG0580027152.01.T01:intron 50.0%
! GGAGCATATCCATGGGTTGT+GGG - Chr5:54834237-54834256 MsG0580027152.01.T01:CDS 50.0%
! TCAAGCACCTTTGAGGGAAG+GGG + Chr5:54836680-54836699 None:intergenic 50.0%
! TGGAGCATATCCATGGGTTG+TGG - Chr5:54834236-54834255 MsG0580027152.01.T01:CDS 50.0%
! TGTTATGGTGGAGGAAGTGG+TGG - Chr5:54835350-54835369 MsG0580027152.01.T01:intron 50.0%
!! CATTATGCCGCGGTTTGGTT+CGG - Chr5:54836260-54836279 MsG0580027152.01.T01:intron 50.0%
!! CTCCAACTTGTTACCGCTAC+TGG + Chr5:54838086-54838105 None:intergenic 50.0%
!! GCATGGTTTGGTTCGGTTTG+CGG + Chr5:54836301-54836320 None:intergenic 50.0%
AAGAGCTGGGTCGGTTAGCA+TGG - Chr5:54834216-54834235 MsG0580027152.01.T01:CDS 55.0%
ACCCATGGGCCCCCTTATAT+AGG - Chr5:54835485-54835504 MsG0580027152.01.T01:intron 55.0%
ACTCGGAGACCCAGATCATC+AGG + Chr5:54838452-54838471 None:intergenic 55.0%
CACCTATATAAGGGGGCCCA+TGG + Chr5:54835490-54835509 None:intergenic 55.0%
CACTTCTCTACTCAGCCGCA+TGG + Chr5:54836318-54836337 None:intergenic 55.0%
CATGCGGCTGAGTAGAGAAG+TGG - Chr5:54836316-54836335 MsG0580027152.01.T01:intron 55.0%
CCCAGATCATCAGGTACCAC+AGG + Chr5:54838443-54838462 None:intergenic 55.0%
CGAAACTCTCTGGCTGCGAT+TGG - Chr5:54834819-54834838 MsG0580027152.01.T01:intron 55.0%
CTCTACTCAGCCGCATGGTT+TGG + Chr5:54836313-54836332 None:intergenic 55.0%
GAGGTCCTCTCTCAAGACAG+TGG - Chr5:54838196-54838215 MsG0580027152.01.T01:intron 55.0%
GAGTGGTGGTTGGAGGTTGA+AGG - Chr5:54835258-54835277 MsG0580027152.01.T01:intron 55.0%
GCCTCCTCTGTCTTCAACTC+AGG + Chr5:54834650-54834669 None:intergenic 55.0%
GCTCTTTGCCTAAACCCAGC+AGG + Chr5:54834202-54834221 None:intergenic 55.0%
GCTGGGTTTAGGCAAAGAGC+TGG - Chr5:54834202-54834221 MsG0580027152.01.T01:CDS 55.0%
GGGCATTCTCGAGATTGGAC+AGG - Chr5:54838743-54838762 MsG0580027152.01.T01:intron 55.0%
GTAGATGCCTGGTGGCATGA+TGG - Chr5:54838545-54838564 MsG0580027152.01.T01:intron 55.0%
GTTAGGGTGGAAGAGAGTGG+TGG - Chr5:54835244-54835263 MsG0580027152.01.T01:intron 55.0%
TCACGACATCCAGGATGCAG+TGG - Chr5:54838287-54838306 MsG0580027152.01.T01:intron 55.0%
TGGAAGAGAGTGGTGGTTGG+AGG - Chr5:54835251-54835270 MsG0580027152.01.T01:intron 55.0%
TGGGCTTGAACAAGCCTGCT+GGG - Chr5:54834185-54834204 MsG0580027152.01.T01:CDS 55.0%
TGGGTCTCCGAGTAGATGAG+AGG - Chr5:54838459-54838478 MsG0580027152.01.T01:intron 55.0%
TGGTGGTTGGAGGTTGAAGG+TGG - Chr5:54835261-54835280 MsG0580027152.01.T01:intron 55.0%
TGGTTGGAGGTTGAAGGTGG+TGG - Chr5:54835264-54835283 MsG0580027152.01.T01:intron 55.0%
TGTCCGTTAAGTGGGTGAGG+TGG + Chr5:54837587-54837606 None:intergenic 55.0%
TTGGGCTTGAACAAGCCTGC+TGG - Chr5:54834184-54834203 MsG0580027152.01.T01:CDS 55.0%
! ATGCCTGGTGGCATGATGGA+TGG - Chr5:54838549-54838568 MsG0580027152.01.T01:intron 55.0%
! GAGGTTGAAGGTGGTGGCTA+TGG - Chr5:54835270-54835289 MsG0580027152.01.T01:intron 55.0%
! GTTGAAGGTGGTGGCTATGG+AGG - Chr5:54835273-54835292 MsG0580027152.01.T01:intron 55.0%
! TATGGTGGAGGAAGTGGTGG+TGG - Chr5:54835353-54835372 MsG0580027152.01.T01:intron 55.0%
! TCTCTGGCTGCGATTGGTTC+CGG - Chr5:54834825-54834844 MsG0580027152.01.T01:intron 55.0%
!! CTCAGCCGCATGGTTTGGTT+CGG + Chr5:54836308-54836327 None:intergenic 55.0%
!! CTGGTGGCATGATGGATGGT+GGG - Chr5:54838553-54838572 MsG0580027152.01.T01:intron 55.0%
!! TGCAGGGGCATTCTCGAGAT+TGG - Chr5:54838738-54838757 MsG0580027152.01.T01:intron 55.0%
!! TGGCATGATGGATGGTGGGA+AGG - Chr5:54838557-54838576 MsG0580027152.01.T01:intron 55.0%
CCACCATCCATCATGCCACC+AGG + Chr5:54838555-54838574 None:intergenic 60.0%
GGAGAAGAGTCCGAGGGTTG+TGG + Chr5:54834787-54834806 None:intergenic 60.0%
GGGTGGAAGAGAGTGGTGGT+TGG - Chr5:54835248-54835267 MsG0580027152.01.T01:intron 60.0%
!! CCTGGTGGCATGATGGATGG+TGG - Chr5:54838552-54838571 MsG0580027152.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 54834136 54839040 54834136 ID=MsG0580027152.01;Name=MsG0580027152.01
Chr5 mRNA 54834136 54839040 54834136 ID=MsG0580027152.01.T01;Parent=MsG0580027152.01;Name=MsG0580027152.01.T01;_AED=0.37;_eAED=0.39;_QI=0|0|0|0.6|1|1|5|0|334
Chr5 exon 54838907 54839040 54838907 ID=MsG0580027152.01.T01:exon:41408;Parent=MsG0580027152.01.T01
Chr5 exon 54837836 54837942 54837836 ID=MsG0580027152.01.T01:exon:41407;Parent=MsG0580027152.01.T01
Chr5 exon 54834900 54835141 54834900 ID=MsG0580027152.01.T01:exon:41406;Parent=MsG0580027152.01.T01
Chr5 exon 54834534 54834757 54834534 ID=MsG0580027152.01.T01:exon:41405;Parent=MsG0580027152.01.T01
Chr5 exon 54834136 54834433 54834136 ID=MsG0580027152.01.T01:exon:41404;Parent=MsG0580027152.01.T01
Chr5 CDS 54838907 54839040 54838907 ID=MsG0580027152.01.T01:cds;Parent=MsG0580027152.01.T01
Chr5 CDS 54837836 54837942 54837836 ID=MsG0580027152.01.T01:cds;Parent=MsG0580027152.01.T01
Chr5 CDS 54834900 54835141 54834900 ID=MsG0580027152.01.T01:cds;Parent=MsG0580027152.01.T01
Chr5 CDS 54834534 54834757 54834534 ID=MsG0580027152.01.T01:cds;Parent=MsG0580027152.01.T01
Chr5 CDS 54834136 54834433 54834136 ID=MsG0580027152.01.T01:cds;Parent=MsG0580027152.01.T01
Gene Sequence

>MsG0580027152.01.T01

ATGCAGATGGGGTGTAAACAGCAGCAGAAGACACAAAGAAATTGGCAGTTGGGCTTGAACAAGCCTGCTGGGTTTAGGCAAAGAGCTGGGTCGGTTAGCATGGAGCATATCCATGGGTTGTGGGTGCAATTGAGGTTGAAAGTTGTTAGGGTGGAAGAGAGTGGTGGTTGGAGGTTGAAGGTGGTGGCTATGGAGGTTAGTTATGGTGGTGGAAAGTTAGTTAAAGGTGAAGATGGAGGTGGTTCTCTTCAATTAGAAAAATTGAGTAATTGTAAGATTGATGCCAAAACCAGTAGCGGTAACAAGTTGGAGGGTTCCGTAAAACTGGTTGGAACCACCAAGTTGGCCACAATCAAAGAGACAAACGAAGCTTCACAGTATTTAGCTGTAGGCTCCAATGTTGAGGTCCTCTCTCAAGACAGTGGGATTAGAGGTTGTTGGTTTAGAGCTTCTGTTATCAAGAGGCACAAAGACAAAGTGAAGGAATGGATTTTAGCTTCTAGACCTGTGGTACCTGATGATCTGGGTCTCCGAGTAGATGAGAGGACCAAGATCCGACCACTATTAGAGAAACGTGGAATATCTTTTGTGGGTGATGTTGGTTACATTGTAGATGCCTGGTGGCATGATGGATGGTGGGAAGGCATTGTTGTTCAAAAAGAATTTGATGATAAATATCATGTTTATTTCCCAGGTATGACCTTCTGGGGCATTCTCGAGATTGGACAGGGAATGAATGGATGGGTAAAGGTTAGGGAAAGGCCTGATGTTGTAACTTGCATTGCATTAAGCTTGAAAACAAAACAAAGTTCCTGCAAATCTGAGGACAGAAAATCAACTGTAGCATCTATTGGAGATGGAATAATACAATCTAGCAGGCAGGCTGATACTTACTCGGGTTCTTCTGAAAAGGATAAACTTAGAAAGACTGAGGAAGTTCCAGATCTTGTGAAGGATGTTTTATCATTGCAGTTAAGGTGGAAGTCATCAAGGAAGAGGAATTGA

Protein sequence

>MsG0580027152.01.T01

MQMGCKQQQKTQRNWQLGLNKPAGFRQRAGSVSMEHIHGLWVQLRLKVVRVEESGGWRLKVVAMEVSYGGGKLVKGEDGGGSLQLEKLSNCKIDAKTSSGNKLEGSVKLVGTTKLATIKETNEASQYLAVGSNVEVLSQDSGIRGCWFRASVIKRHKDKVKEWILASRPVVPDDLGLRVDERTKIRPLLEKRGISFVGDVGYIVDAWWHDGWWEGIVVQKEFDDKYHVYFPGMTFWGILEIGQGMNGWVKVRERPDVVTCIALSLKTKQSSCKSEDRKSTVASIGDGIIQSSRQADTYSGSSEKDKLRKTEEVPDLVKDVLSLQLRWKSSRKRN*