Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002563.01.T01 | XP_013450334.1 | 96.277 | 376 | 14 | 0 | 1 | 376 | 1 | 376 | 0 | 756 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002563.01.T01 | Q9FVQ0 | 47.425 | 369 | 194 | 0 | 8 | 376 | 5 | 373 | 1.59E-134 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002563.01.T01 | A0A072U3V7 | 96.277 | 376 | 14 | 0 | 1 | 376 | 1 | 376 | 0.0 | 756 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047869.01 | MsG0180002563.01 | 0.807720 | 4.402943e-50 | 2.470462e-47 |
| MsG0080048874.01 | MsG0180002563.01 | 0.844315 | 8.155874e-59 | 1.311580e-55 |
| MsG0180000091.01 | MsG0180002563.01 | 0.800876 | 1.173231e-48 | 5.524172e-46 |
| MsG0180000470.01 | MsG0180002563.01 | 0.829212 | 5.841691e-55 | 5.939779e-52 |
| MsG0180002195.01 | MsG0180002563.01 | 0.801624 | 8.245611e-49 | 3.956201e-46 |
| MsG0180002563.01 | MsG0180002571.01 | 0.916698 | 1.302044e-85 | 3.622086e-81 |
| MsG0180002563.01 | MsG0180002842.01 | 0.807470 | 4.975704e-50 | 2.773811e-47 |
| MsG0180002563.01 | MsG0180003669.01 | 0.816878 | 4.407043e-52 | 3.160702e-49 |
| MsG0180002563.01 | MsG0180003673.01 | 0.806406 | 8.356055e-50 | 4.531591e-47 |
| MsG0180002563.01 | MsG0180003686.01 | 0.816940 | 4.267800e-52 | 3.066126e-49 |
| MsG0180002563.01 | MsG0180004264.01 | 0.836281 | 1.025870e-56 | 1.286949e-53 |
| MsG0180002563.01 | MsG0180004426.01 | 0.811048 | 8.508395e-51 | 5.213019e-48 |
| MsG0180002563.01 | MsG0180004789.01 | 0.809832 | 1.557404e-50 | 9.239991e-48 |
| MsG0180002563.01 | MsG0180005438.01 | 0.803451 | 3.464672e-49 | 1.741668e-46 |
| MsG0180002563.01 | MsG0180005974.01 | 0.800431 | 1.446156e-48 | 6.732622e-46 |
| MsG0180002563.01 | MsG0180006257.01 | 0.804316 | 2.290481e-49 | 1.177254e-46 |
| MsG0180002563.01 | MsG0280006299.01 | 0.807676 | 4.499717e-50 | 2.521800e-47 |
| MsG0180002563.01 | MsG0280008615.01 | 0.822246 | 2.625298e-53 | 2.185330e-50 |
| MsG0180002563.01 | MsG0280008894.01 | 0.804725 | 1.882204e-49 | 9.777400e-47 |
| MsG0180002563.01 | MsG0280010443.01 | 0.816550 | 5.218809e-52 | 3.709195e-49 |
| MsG0180002563.01 | MsG0380011494.01 | 0.800007 | 1.763325e-48 | 8.121185e-46 |
| MsG0180002563.01 | MsG0380012009.01 | 0.806646 | 7.434571e-50 | 4.056514e-47 |
| MsG0180002563.01 | MsG0380012330.01 | 0.800310 | 1.530389e-48 | 7.103169e-46 |
| MsG0180002563.01 | MsG0380013176.01 | 0.809371 | 1.955420e-50 | 1.146091e-47 |
| MsG0180002563.01 | MsG0380014135.01 | 0.801588 | 8.386632e-49 | 4.020239e-46 |
| MsG0180002563.01 | MsG0380014573.01 | 0.805730 | 1.159172e-49 | 6.179355e-47 |
| MsG0180002563.01 | MsG0380015034.01 | 0.807644 | 4.570107e-50 | 2.559076e-47 |
| MsG0180002563.01 | MsG0380015039.01 | 0.805521 | 1.282615e-49 | 6.799898e-47 |
| MsG0180002563.01 | MsG0380015566.01 | 0.820799 | 5.667094e-53 | 4.529190e-50 |
| MsG0180002563.01 | MsG0380015720.01 | 0.809622 | 1.727262e-50 | 1.019183e-47 |
| MsG0180002563.01 | MsG0380016285.01 | 0.800528 | 1.381511e-48 | 6.447298e-46 |
| MsG0180002563.01 | MsG0380016475.01 | 0.804315 | 2.291489e-49 | 1.177752e-46 |
| MsG0180002563.01 | MsG0380017323.01 | 0.805371 | 1.378921e-49 | 7.282592e-47 |
| MsG0180002563.01 | MsG0380017822.01 | 0.808387 | 3.175628e-50 | 1.813395e-47 |
| MsG0180002563.01 | MsG0480018318.01 | 0.809999 | 1.433204e-50 | 8.540804e-48 |
| MsG0180002563.01 | MsG0480018465.01 | 0.803532 | 3.333438e-49 | 1.679244e-46 |
| MsG0180002563.01 | MsG0480019435.01 | 0.810956 | 8.905913e-51 | 5.443633e-48 |
| MsG0180002563.01 | MsG0480020471.01 | 0.801981 | 6.966233e-49 | 3.372745e-46 |
| MsG0180002563.01 | MsG0480022827.01 | 0.804910 | 1.722122e-49 | 8.988964e-47 |
| MsG0180002563.01 | MsG0480023248.01 | 0.818118 | 2.316133e-52 | 1.718450e-49 |
| MsG0180002563.01 | MsG0480023251.01 | 0.801878 | 7.314761e-49 | 3.532574e-46 |
| MsG0180002563.01 | MsG0480023654.01 | 0.841739 | 3.959301e-58 | 5.871844e-55 |
| MsG0180002563.01 | MsG0580025022.01 | 0.818997 | 1.463531e-52 | 1.112669e-49 |
| MsG0180002563.01 | MsG0580025723.01 | 0.810509 | 1.112594e-50 | 6.719148e-48 |
| MsG0180002563.01 | MsG0580025758.01 | 0.808242 | 3.409682e-50 | 1.939648e-47 |
| MsG0180002563.01 | MsG0580026002.01 | 0.800626 | 1.319804e-48 | 6.174685e-46 |
| MsG0180002563.01 | MsG0580027018.01 | 0.804113 | 2.524878e-49 | 1.291015e-46 |
| MsG0180002563.01 | MsG0580027679.01 | 0.807689 | 4.470094e-50 | 2.506049e-47 |
| MsG0180002563.01 | MsG0580027688.01 | 0.801226 | 9.948526e-49 | 4.725787e-46 |
| MsG0180002563.01 | MsG0580027745.01 | 0.800904 | 1.157667e-48 | 5.454902e-46 |
| MsG0180002563.01 | MsG0580027767.01 | 0.805983 | 1.025815e-49 | 5.503832e-47 |
| MsG0180002563.01 | MsG0580027832.01 | 0.803865 | 2.842768e-49 | 1.444390e-46 |
| MsG0180002563.01 | MsG0580027833.01 | 0.826056 | 3.344983e-54 | 3.103076e-51 |
| MsG0180002563.01 | MsG0580027838.01 | 0.814831 | 1.261119e-51 | 8.551940e-49 |
| MsG0180002563.01 | MsG0580029554.01 | 0.818956 | 1.495005e-52 | 1.135311e-49 |
| MsG0180002563.01 | MsG0580030105.01 | 0.807462 | 4.995166e-50 | 2.784062e-47 |
| MsG0180002563.01 | MsG0680032157.01 | 0.822585 | 2.189123e-53 | 1.840197e-50 |
| MsG0180002563.01 | MsG0680032801.01 | 0.865491 | 5.683594e-65 | 1.852550e-61 |
| MsG0180002563.01 | MsG0680033379.01 | 0.814308 | 1.646174e-51 | 1.100744e-48 |
| MsG0180002563.01 | MsG0680034565.01 | 0.807189 | 5.708780e-50 | 3.159174e-47 |
| MsG0180002563.01 | MsG0680035444.01 | 0.816152 | 6.408592e-52 | 4.505732e-49 |
| MsG0180002563.01 | MsG0680035467.01 | 0.809321 | 2.004523e-50 | 1.173276e-47 |
| MsG0180002563.01 | MsG0680035694.01 | 0.816793 | 4.605229e-52 | 3.294956e-49 |
| MsG0180002563.01 | MsG0680035736.01 | 0.805222 | 1.481626e-49 | 7.795004e-47 |
| MsG0180002563.01 | MsG0780035948.01 | 0.805679 | 1.187970e-49 | 6.324302e-47 |
| MsG0180002563.01 | MsG0780037678.01 | 0.801235 | 9.908999e-49 | 4.708106e-46 |
| MsG0180002563.01 | MsG0780038386.01 | 0.829573 | 4.771894e-55 | 4.903096e-52 |
| MsG0180002563.01 | MsG0780038401.01 | 0.801466 | 8.886782e-49 | 4.246930e-46 |
| MsG0180002563.01 | MsG0780038439.01 | 0.819575 | 1.080751e-52 | 8.348920e-50 |
| MsG0180002563.01 | MsG0780039178.01 | 0.804944 | 1.693433e-49 | 8.846883e-47 |
| MsG0180002563.01 | MsG0780039252.01 | 0.834457 | 2.964574e-56 | 3.520360e-53 |
| MsG0180002563.01 | MsG0780040576.01 | -0.825668 | 4.135744e-54 | 3.794470e-51 |
| MsG0180002563.01 | MsG0780040704.01 | 0.813953 | 1.971852e-51 | 1.305765e-48 |
| MsG0180002563.01 | MsG0880041836.01 | 0.805149 | 1.534629e-49 | 8.059020e-47 |
| MsG0180002563.01 | MsG0880042161.01 | 0.820520 | 6.568536e-53 | 5.208895e-50 |
| MsG0180002563.01 | MsG0880042454.01 | 0.821496 | 3.913920e-53 | 3.189337e-50 |
| MsG0180002563.01 | MsG0880042800.01 | 0.801310 | 9.562255e-49 | 4.551978e-46 |
| MsG0180002563.01 | MsG0880042886.01 | 0.801704 | 7.940606e-49 | 3.817608e-46 |
| MsG0180002563.01 | MsG0880043941.01 | 0.815145 | 1.073927e-51 | 7.344566e-49 |
| MsG0180002563.01 | MsG0880044573.01 | 0.840901 | 6.577142e-58 | 9.504250e-55 |
| MsG0180002563.01 | MsG0880045371.01 | 0.805046 | 1.612810e-49 | 8.447062e-47 |
| MsG0180002563.01 | MsG0880045639.01 | 0.804998 | 1.650688e-49 | 8.634727e-47 |
| MsG0180002563.01 | MsG0880045691.01 | 0.806810 | 6.866431e-50 | 3.762717e-47 |
| MsG0180002563.01 | MsG0880045816.01 | 0.807103 | 5.950857e-50 | 3.285648e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002563.01.T01 | MTR_7g107690 | 96.277 | 376 | 14 | 0 | 1 | 376 | 1 | 376 | 0.0 | 756 |
| MsG0180002563.01.T01 | MTR_7g107710 | 67.914 | 374 | 118 | 2 | 8 | 380 | 6 | 378 | 0.0 | 537 |
| MsG0180002563.01.T01 | MTR_8g432640 | 49.593 | 369 | 186 | 0 | 8 | 376 | 6 | 374 | 1.86e-137 | 397 |
| MsG0180002563.01.T01 | MTR_5g033260 | 49.864 | 369 | 185 | 0 | 8 | 376 | 6 | 374 | 2.84e-135 | 392 |
| MsG0180002563.01.T01 | MTR_3g088925 | 49.866 | 373 | 187 | 0 | 8 | 380 | 7 | 379 | 7.57e-133 | 386 |
| MsG0180002563.01.T01 | MTR_3g088945 | 49.866 | 373 | 187 | 0 | 8 | 380 | 7 | 379 | 1.94e-132 | 385 |
| MsG0180002563.01.T01 | MTR_3g088955 | 49.062 | 373 | 190 | 0 | 8 | 380 | 7 | 379 | 5.69e-130 | 379 |
| MsG0180002563.01.T01 | MTR_4g051642 | 48.525 | 373 | 191 | 1 | 8 | 380 | 7 | 378 | 3.29e-127 | 372 |
| MsG0180002563.01.T01 | MTR_3g109520 | 46.917 | 373 | 192 | 2 | 9 | 376 | 40 | 411 | 1.06e-121 | 358 |
| MsG0180002563.01.T01 | MTR_6g086870 | 45.745 | 376 | 195 | 4 | 9 | 376 | 21 | 395 | 4.88e-119 | 351 |
| MsG0180002563.01.T01 | MTR_1g008380 | 46.917 | 373 | 191 | 3 | 9 | 376 | 43 | 413 | 5.10e-119 | 352 |
| MsG0180002563.01.T01 | MTR_1g069275 | 45.722 | 374 | 193 | 5 | 9 | 376 | 26 | 395 | 1.21e-117 | 348 |
| MsG0180002563.01.T01 | MTR_1g046230 | 44.800 | 375 | 198 | 4 | 9 | 376 | 25 | 397 | 6.31e-115 | 341 |
| MsG0180002563.01.T01 | MTR_7g099330 | 43.700 | 373 | 198 | 4 | 9 | 376 | 25 | 390 | 3.23e-114 | 339 |
| MsG0180002563.01.T01 | MTR_1g011630 | 43.968 | 373 | 198 | 4 | 9 | 376 | 17 | 383 | 1.27e-113 | 337 |
| MsG0180002563.01.T01 | MTR_7g099160 | 40.656 | 305 | 169 | 4 | 77 | 376 | 214 | 511 | 4.79e-77 | 248 |
| MsG0180002563.01.T01 | MTR_3g096030 | 40.331 | 181 | 84 | 1 | 4 | 184 | 2 | 158 | 1.20e-44 | 152 |
| MsG0180002563.01.T01 | MTR_1g041605 | 85.000 | 40 | 6 | 0 | 112 | 151 | 29 | 68 | 5.25e-17 | 75.1 |
| MsG0180002563.01.T01 | MTR_8g037910 | 25.532 | 235 | 141 | 5 | 7 | 214 | 3 | 230 | 2.81e-15 | 75.9 |
| MsG0180002563.01.T01 | MTR_8g037910 | 25.532 | 235 | 141 | 5 | 7 | 214 | 3 | 230 | 3.59e-15 | 76.3 |
| MsG0180002563.01.T01 | MTR_8g037910 | 25.532 | 235 | 141 | 5 | 7 | 214 | 3 | 230 | 7.79e-15 | 75.9 |
| MsG0180002563.01.T01 | MTR_8g037880 | 24.268 | 239 | 148 | 6 | 7 | 217 | 3 | 236 | 2.21e-14 | 74.7 |
| MsG0180002563.01.T01 | MTR_3g437580 | 25.101 | 247 | 138 | 6 | 4 | 214 | 9 | 244 | 9.79e-14 | 72.4 |
| MsG0180002563.01.T01 | MTR_3g437580 | 25.101 | 247 | 138 | 6 | 4 | 214 | 9 | 244 | 2.32e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002563.01.T01 | AT1G48910 | 47.425 | 369 | 194 | 0 | 8 | 376 | 5 | 373 | 1.62e-135 | 392 |
| MsG0180002563.01.T01 | AT1G21430 | 45.910 | 379 | 199 | 5 | 1 | 376 | 1 | 376 | 5.00e-122 | 358 |
| MsG0180002563.01.T01 | AT1G04610 | 46.543 | 376 | 191 | 5 | 9 | 376 | 38 | 411 | 2.62e-120 | 355 |
| MsG0180002563.01.T01 | AT4G13260 | 44.681 | 376 | 202 | 2 | 9 | 379 | 29 | 403 | 6.92e-118 | 348 |
| MsG0180002563.01.T01 | AT5G25620 | 46.133 | 375 | 192 | 4 | 9 | 376 | 33 | 404 | 1.97e-116 | 345 |
| MsG0180002563.01.T01 | AT5G25620 | 46.133 | 375 | 192 | 4 | 9 | 376 | 33 | 404 | 4.73e-116 | 345 |
| MsG0180002563.01.T01 | AT5G43890 | 44.533 | 375 | 199 | 5 | 9 | 376 | 26 | 398 | 2.04e-115 | 343 |
| MsG0180002563.01.T01 | AT1G04180 | 44.920 | 374 | 196 | 5 | 9 | 376 | 26 | 395 | 2.96e-114 | 340 |
| MsG0180002563.01.T01 | AT4G32540 | 43.684 | 380 | 201 | 5 | 9 | 382 | 22 | 394 | 8.73e-114 | 338 |
| MsG0180002563.01.T01 | AT4G32540 | 44.094 | 381 | 200 | 5 | 9 | 382 | 22 | 396 | 1.16e-113 | 338 |
| MsG0180002563.01.T01 | AT4G28720 | 43.883 | 376 | 201 | 6 | 9 | 376 | 26 | 399 | 1.18e-113 | 338 |
| MsG0180002563.01.T01 | AT5G11320 | 44.772 | 373 | 193 | 4 | 9 | 376 | 18 | 382 | 1.05e-111 | 333 |
| MsG0180002563.01.T01 | AT2G33230 | 44.415 | 376 | 198 | 5 | 9 | 376 | 33 | 405 | 2.32e-107 | 322 |
| MsG0180002563.01.T01 | AT5G11320 | 44.582 | 323 | 167 | 3 | 9 | 326 | 18 | 333 | 2.43e-95 | 289 |
| MsG0180002563.01.T01 | AT4G13260 | 46.099 | 282 | 147 | 1 | 9 | 285 | 29 | 310 | 4.74e-92 | 279 |
| MsG0180002563.01.T01 | AT4G13260 | 40.940 | 298 | 169 | 3 | 87 | 379 | 5 | 300 | 3.46e-77 | 241 |
| MsG0180002563.01.T01 | AT1G65860 | 27.119 | 236 | 136 | 4 | 5 | 213 | 10 | 236 | 1.26e-15 | 78.6 |
| MsG0180002563.01.T01 | AT1G62560 | 27.197 | 239 | 133 | 7 | 5 | 213 | 10 | 237 | 1.29e-15 | 78.2 |
| MsG0180002563.01.T01 | AT1G62560 | 27.542 | 236 | 130 | 7 | 8 | 213 | 13 | 237 | 1.68e-15 | 78.2 |
| MsG0180002563.01.T01 | AT1G12140 | 28.054 | 221 | 146 | 5 | 49 | 258 | 74 | 292 | 2.32e-13 | 71.6 |
| MsG0180002563.01.T01 | AT1G12140 | 28.054 | 221 | 146 | 5 | 49 | 258 | 74 | 292 | 2.32e-13 | 71.6 |
| MsG0180002563.01.T01 | AT1G12160 | 24.185 | 368 | 173 | 12 | 8 | 342 | 12 | 306 | 3.20e-13 | 71.2 |
| MsG0180002563.01.T01 | AT5G07800 | 27.413 | 259 | 139 | 8 | 5 | 226 | 13 | 259 | 5.49e-13 | 70.5 |
| MsG0180002563.01.T01 | AT5G61290 | 26.971 | 241 | 136 | 6 | 1 | 205 | 9 | 245 | 3.91e-12 | 67.8 |
| MsG0180002563.01.T01 | AT1G62540 | 27.917 | 240 | 129 | 6 | 5 | 213 | 10 | 236 | 1.17e-11 | 66.2 |
| MsG0180002563.01.T01 | AT1G62540 | 27.848 | 237 | 133 | 5 | 5 | 213 | 10 | 236 | 1.29e-11 | 66.2 |
| MsG0180002563.01.T01 | AT1G62540 | 27.917 | 240 | 129 | 6 | 5 | 213 | 10 | 236 | 1.38e-11 | 66.2 |
| MsG0180002563.01.T01 | AT1G12200 | 29.592 | 196 | 110 | 7 | 80 | 258 | 113 | 297 | 8.30e-11 | 63.5 |
Find 82 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAAGGGGTATGCTGAATT+TGG | 0.142332 | 1:+40449190 | MsG0180002563.01.T01:CDS |
| CTCTTCAACCCTTCAATTTC+AGG | 0.149369 | 1:-40448308 | None:intergenic |
| TACGGGGATGTCACGAATTA+TGG | 0.154022 | 1:+40449284 | MsG0180002563.01.T01:CDS |
| GTTGTTGGGTCTGGGAATTC+TGG | 0.176673 | 1:+40448401 | MsG0180002563.01.T01:CDS |
| GTACTTGACCTTCATATAAA+AGG | 0.212639 | 1:-40449330 | None:intergenic |
| CATGTTCTTGTTGTTGGGTC+TGG | 0.238263 | 1:+40448392 | MsG0180002563.01.T01:CDS |
| TCAAGGGGTATGCTGAATTT+GGG | 0.240991 | 1:+40449191 | MsG0180002563.01.T01:CDS |
| GTTGTTGGAGCAGGCCCTTC+TGG | 0.254075 | 1:+40447897 | MsG0180002563.01.T01:CDS |
| GATGGTGATGCTTAGTAAAA+TGG | 0.306091 | 1:+40449259 | MsG0180002563.01.T01:CDS |
| AATTAAGTCTCGAGAGTTAA+AGG | 0.307124 | 1:+40449391 | MsG0180002563.01.T01:CDS |
| TCTCTTTCGAGGATTATATA+AGG | 0.314818 | 1:-40447957 | None:intergenic |
| ATGCTTAGTAAAATGGTTTA+CGG | 0.339605 | 1:+40449266 | MsG0180002563.01.T01:CDS |
| GAAGGTGAAGGCTAAGAATA+AGG | 0.345400 | 1:+40448211 | MsG0180002563.01.T01:CDS |
| AATGAAAGAGTGATAGTTGT+TGG | 0.360593 | 1:+40447882 | MsG0180002563.01.T01:CDS |
| GATGATCATGTTCTTGTTGT+TGG | 0.365508 | 1:+40448386 | MsG0180002563.01.T01:CDS |
| GGGAAAGTGATTCATTCAAC+TGG | 0.376100 | 1:+40448338 | MsG0180002563.01.T01:CDS |
| ATGTTCTTGTTGTTGGGTCT+GGG | 0.378865 | 1:+40448393 | MsG0180002563.01.T01:CDS |
| TGCTTAGTAAAATGGTTTAC+GGG | 0.386664 | 1:+40449267 | MsG0180002563.01.T01:CDS |
| AGCCAAGTTACCCTATTCAT+TGG | 0.388713 | 1:+40451192 | MsG0180002563.01.T01:CDS |
| ATCAACCCACAAGTGGCTTA+AGG | 0.389315 | 1:+40450740 | MsG0180002563.01.T01:CDS |
| AAGGCTAAGAATAAGGATTC+TGG | 0.392445 | 1:+40448218 | MsG0180002563.01.T01:CDS |
| CATTCAACTGGGTTTAAGAA+TGG | 0.393718 | 1:+40448350 | MsG0180002563.01.T01:CDS |
| ATGATGAAGGTTCTGAGAAA+TGG | 0.397382 | 1:+40448189 | MsG0180002563.01.T01:CDS |
| CCTTCAATTTCAGGTACAAA+AGG | 0.400011 | 1:-40448299 | None:intergenic |
| CTATCAAGGAGAGGTTTCTA+TGG | 0.400558 | 1:+40451245 | MsG0180002563.01.T01:CDS |
| ACGGGGATGTCACGAATTAT+GGG | 0.428718 | 1:+40449285 | MsG0180002563.01.T01:CDS |
| TATATTGTGTTGGACTATCA+AGG | 0.438069 | 1:+40451231 | MsG0180002563.01.T01:CDS |
| ATTCAACTGGGTTTAAGAAT+GGG | 0.438492 | 1:+40448351 | MsG0180002563.01.T01:CDS |
| TAAGGATTCTGGTGAGGTTG+AGG | 0.446777 | 1:+40448229 | MsG0180002563.01.T01:CDS |
| CTTAAGCATTCTATTTCAGC+TGG | 0.447488 | 1:-40450642 | None:intergenic |
| TCAACTGTTCTGTGATAAAG+AGG | 0.449237 | 1:-40448155 | None:intergenic |
| ATGATCATGTTCTTGTTGTT+GGG | 0.450522 | 1:+40448387 | MsG0180002563.01.T01:CDS |
| ATGAATAGGGTAACTTGGCT+TGG | 0.450552 | 1:-40451189 | None:intergenic |
| AAGGTTCCAACGTCAATAAT+AGG | 0.451735 | 1:-40449362 | None:intergenic |
| TTCGAGGATTATATAAGGAA+TGG | 0.455797 | 1:-40447952 | None:intergenic |
| TTCCAATGAATAGGGTAACT+TGG | 0.456789 | 1:-40451194 | None:intergenic |
| TTCTGGCATGGAAATTGCAT+TGG | 0.469456 | 1:+40448418 | MsG0180002563.01.T01:CDS |
| TACTTGACCTTCATATAAAA+GGG | 0.473078 | 1:-40449329 | None:intergenic |
| GTAAACCTTAAGCCACTTGT+GGG | 0.488383 | 1:-40450745 | None:intergenic |
| TGAATAGGGTAACTTGGCTT+GGG | 0.488661 | 1:-40451188 | None:intergenic |
| GGATTATATAAGGAATGGAT+TGG | 0.489614 | 1:-40447947 | None:intergenic |
| GAATACCATCATCATTCAAA+AGG | 0.492685 | 1:-40451166 | None:intergenic |
| TTCAATCGTTGTTCGAAGCA+AGG | 0.504367 | 1:+40448466 | MsG0180002563.01.T01:CDS |
| TCTGATGAAGTATTTGTCAA+TGG | 0.510851 | 1:+40449220 | MsG0180002563.01.T01:CDS |
| CAAGGGGTATGCTGAATTTG+GGG | 0.511286 | 1:+40449192 | MsG0180002563.01.T01:CDS |
| TGGGGTTGGTAGGCCTAGTG+AGG | 0.512474 | 1:+40449304 | MsG0180002563.01.T01:CDS |
| GCTGAAATAGAATGCTTAAG+TGG | 0.513060 | 1:+40450645 | MsG0180002563.01.T01:CDS |
| CGTTGATTAGATTCTAGTTG+AGG | 0.525399 | 1:+40451385 | MsG0180002563.01.T01:intron |
| ATATAAAAGGGACCCTCACT+AGG | 0.526447 | 1:-40449317 | None:intergenic |
| CTTCAATTTCAGGTACAAAA+GGG | 0.526666 | 1:-40448298 | None:intergenic |
| TGTAAACCTTAAGCCACTTG+TGG | 0.531681 | 1:-40450746 | None:intergenic |
| GGAATGTATGATGGAAAAGA+AGG | 0.532095 | 1:-40448077 | None:intergenic |
| AAGTTACCCTATTCATTGGA+AGG | 0.536623 | 1:+40451196 | MsG0180002563.01.T01:CDS |
| GGTGAGGTTGAGGAATATGA+AGG | 0.542585 | 1:+40448239 | MsG0180002563.01.T01:CDS |
| AGGTTGAGGAATATGAAGGA+AGG | 0.551335 | 1:+40448243 | MsG0180002563.01.T01:CDS |
| ATGTATGATGGAAAAGAAGG+TGG | 0.552215 | 1:-40448074 | None:intergenic |
| GATGGAAAAGAAGGTGGGAA+TGG | 0.556044 | 1:-40448068 | None:intergenic |
| AGAGTGATAGTTGTTGGAGC+AGG | 0.568437 | 1:+40447888 | MsG0180002563.01.T01:CDS |
| TCACGAATTATGGGGTTGGT+AGG | 0.576228 | 1:+40449294 | MsG0180002563.01.T01:CDS |
| GAGAATGCAGAGTATGATGA+AGG | 0.578252 | 1:+40448176 | MsG0180002563.01.T01:CDS |
| GTATTTGTCAATGGAGATGG+TGG | 0.579490 | 1:+40449229 | MsG0180002563.01.T01:CDS |
| TGGGTCTGGGAATTCTGGCA+TGG | 0.586713 | 1:+40448406 | MsG0180002563.01.T01:CDS |
| CGGGGATGTCACGAATTATG+GGG | 0.588744 | 1:+40449286 | MsG0180002563.01.T01:CDS |
| GGGGTTGGTAGGCCTAGTGA+GGG | 0.589928 | 1:+40449305 | MsG0180002563.01.T01:CDS |
| GTGGGTTGATCTATTGAAGC+CGG | 0.593433 | 1:-40450727 | None:intergenic |
| GGAAAGTGATTCATTCAACT+GGG | 0.594965 | 1:+40448339 | MsG0180002563.01.T01:CDS |
| TGTATGATGGAAAAGAAGGT+GGG | 0.596307 | 1:-40448073 | None:intergenic |
| AGTTACCCTATTCATTGGAA+GGG | 0.596925 | 1:+40451197 | MsG0180002563.01.T01:CDS |
| GAAGTATTTGTCAATGGAGA+TGG | 0.597497 | 1:+40449226 | MsG0180002563.01.T01:CDS |
| GCTGCTACTGAGAGACCAGA+AGG | 0.602816 | 1:-40447912 | None:intergenic |
| GAAGGTGGGAATGGTTTGTG+AGG | 0.606122 | 1:-40448059 | None:intergenic |
| TGTGTTGGACTATCAAGGAG+AGG | 0.616154 | 1:+40451236 | MsG0180002563.01.T01:CDS |
| GGAGATGGTGGATTTAGTGA+TGG | 0.618594 | 1:+40449241 | MsG0180002563.01.T01:CDS |
| TTCTGAGAAATGGAAGGTGA+AGG | 0.623363 | 1:+40448199 | MsG0180002563.01.T01:CDS |
| GATGTCACGAATTATGGGGT+TGG | 0.629113 | 1:+40449290 | MsG0180002563.01.T01:CDS |
| TCAATAGATCAACCCACAAG+TGG | 0.631691 | 1:+40450733 | MsG0180002563.01.T01:CDS |
| GCATTGGATCTTATCAACCA+TGG | 0.635858 | 1:+40448434 | MsG0180002563.01.T01:CDS |
| AAGTATCCTATTATTGACGT+TGG | 0.642218 | 1:+40449356 | MsG0180002563.01.T01:CDS |
| GCTTAGTAAAATGGTTTACG+GGG | 0.650434 | 1:+40449268 | MsG0180002563.01.T01:CDS |
| CTGCTACTGAGAGACCAGAA+GGG | 0.656151 | 1:-40447911 | None:intergenic |
| TAAGAATAAGGATTCTGGTG+AGG | 0.661843 | 1:+40448223 | MsG0180002563.01.T01:CDS |
| TGAAGGTTCTGAGAAATGGA+AGG | 0.688803 | 1:+40448193 | MsG0180002563.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTATAGTATGTAT+TGG | - | Chr1:40449873-40449892 | None:intergenic | 10.0% |
| !! | ATAAATAATATAATAAATGC+AGG | + | Chr1:40449157-40449176 | MsG0180002563.01.T01:intron | 10.0% |
| !! | TAGAATAAATATATAATTGA+CGG | + | Chr1:40448996-40449015 | MsG0180002563.01.T01:intron | 10.0% |
| !!! | AAAAAATCTGTTTTTTTTTA+AGG | + | Chr1:40450020-40450039 | MsG0180002563.01.T01:intron | 10.0% |
| !!! | ATTGGTTTTTTTTTTTTTTT+TGG | - | Chr1:40449855-40449874 | None:intergenic | 10.0% |
| !!! | ATTTTTTAAATATAGTATGT+GGG | - | Chr1:40449939-40449958 | None:intergenic | 10.0% |
| !!! | TAAACTAATTAATTATCTTT+TGG | + | Chr1:40451129-40451148 | MsG0180002563.01.T01:intron | 10.0% |
| !!! | TATTTTTTAAATATAGTATG+TGG | - | Chr1:40449940-40449959 | None:intergenic | 10.0% |
| !!! | TTGATTTTAATGATAATTTA+TGG | - | Chr1:40449518-40449537 | None:intergenic | 10.0% |
| !!! | TTTTAAAATATAGTATGTAT+TGG | - | Chr1:40450002-40450021 | None:intergenic | 10.0% |
| !! | AAAACAAAACAAAAAACATT+CGG | - | Chr1:40448570-40448589 | None:intergenic | 15.0% |
| !! | AAAATAAAGGATTAAATTGA+TGG | + | Chr1:40449591-40449610 | MsG0180002563.01.T01:intron | 15.0% |
| !! | AAATACAATTGAATTAGTAA+TGG | - | Chr1:40448828-40448847 | None:intergenic | 15.0% |
| !! | AACAAATTTATTTAAGTGAA+AGG | + | Chr1:40450367-40450386 | MsG0180002563.01.T01:intron | 15.0% |
| !! | AGAATAAATATATAATTGAC+GGG | + | Chr1:40448997-40449016 | MsG0180002563.01.T01:intron | 15.0% |
| !! | ATGTATTCAAGTATAATTTA+AGG | - | Chr1:40449550-40449569 | None:intergenic | 15.0% |
| !!! | ATTTTCTTGTCTTTTTTTAT+TGG | + | Chr1:40450770-40450789 | MsG0180002563.01.T01:intron | 15.0% |
| !!! | CAAAAAAGAATAGTTTTTTT+AGG | + | Chr1:40450996-40451015 | MsG0180002563.01.T01:intron | 15.0% |
| !!! | TAATTAATTATCTTTTGGTA+GGG | + | Chr1:40451134-40451153 | MsG0180002563.01.T01:intron | 15.0% |
| !!! | TATTGTAAAAACTTTTCTTT+AGG | - | Chr1:40448101-40448120 | None:intergenic | 15.0% |
| !!! | TATTTGACTTTAATAGTTTA+AGG | + | Chr1:40449638-40449657 | MsG0180002563.01.T01:intron | 15.0% |
| !!! | TTTATTCTAAAAAAAGATTG+TGG | - | Chr1:40448985-40449004 | None:intergenic | 15.0% |
| !!! | TTTTTTAAATATAGTATGTG+GGG | - | Chr1:40449938-40449957 | None:intergenic | 15.0% |
| !! | AAAAATGGTTTATATTGTGT+TGG | + | Chr1:40451221-40451240 | MsG0180002563.01.T01:CDS | 20.0% |
| !! | AAAGAAACATATCAAACTAT+AGG | + | Chr1:40448745-40448764 | MsG0180002563.01.T01:intron | 20.0% |
| !! | AATATACGTCAAAGTATATA+TGG | - | Chr1:40451097-40451116 | None:intergenic | 20.0% |
| !! | AATGTATGTTACATGAAAAT+GGG | + | Chr1:40451045-40451064 | MsG0180002563.01.T01:intron | 20.0% |
| !! | ACCTAAAATAACATTTAGAT+GGG | + | Chr1:40450329-40450348 | MsG0180002563.01.T01:intron | 20.0% |
| !! | AGAATGACATATATTTCAAT+AGG | - | Chr1:40450091-40450110 | None:intergenic | 20.0% |
| !! | ATTGAAATATATGTCATTCT+AGG | + | Chr1:40450091-40450110 | MsG0180002563.01.T01:intron | 20.0% |
| !! | GTCAAAAAAAAAACATGATA+AGG | - | Chr1:40450977-40450996 | None:intergenic | 20.0% |
| !! | TAATGTATGTTACATGAAAA+TGG | + | Chr1:40451044-40451063 | MsG0180002563.01.T01:intron | 20.0% |
| !! | TACCTAAAATAACATTTAGA+TGG | + | Chr1:40450328-40450347 | MsG0180002563.01.T01:intron | 20.0% |
| !! | TATACTTGAATACATCAATT+TGG | + | Chr1:40449555-40449574 | MsG0180002563.01.T01:intron | 20.0% |
| !! | TCCATAAACAAGTAAAATAA+AGG | + | Chr1:40449578-40449597 | MsG0180002563.01.T01:intron | 20.0% |
| !! | TGAAAAGTGAAATATAATTG+TGG | + | Chr1:40450565-40450584 | MsG0180002563.01.T01:intron | 20.0% |
| !! | TGATTATACTCAAATATTTC+TGG | + | Chr1:40448847-40448866 | MsG0180002563.01.T01:intron | 20.0% |
| !!! | AGATTTTATATAGAATTGGA+CGG | + | Chr1:40448917-40448936 | MsG0180002563.01.T01:intron | 20.0% |
| !!! | CTAATTAATTATCTTTTGGT+AGG | + | Chr1:40451133-40451152 | MsG0180002563.01.T01:intron | 20.0% |
| !!! | GGTAAGATTTTATATAGAAT+TGG | + | Chr1:40448913-40448932 | MsG0180002563.01.T01:intron | 20.0% |
| !!! | TCCTTTATTTTACTTGTTTA+TGG | - | Chr1:40449582-40449601 | None:intergenic | 20.0% |
| !!! | TTCAGAAGATTTTTTTTTGA+GGG | - | Chr1:40449789-40449808 | None:intergenic | 20.0% |
| !!! | TTTCAGAAGATTTTTTTTTG+AGG | - | Chr1:40449790-40449809 | None:intergenic | 20.0% |
| !!! | TTTTTAAATATAGTATGTGG+GGG | - | Chr1:40449937-40449956 | None:intergenic | 20.0% |
| ! | ACAAAAAAGAGAAGAAAGAA+TGG | + | Chr1:40447851-40447870 | MsG0180002563.01.T01:exon | 25.0% |
| ! | AGGTTATCTAACTATAAACA+AGG | + | Chr1:40450387-40450406 | MsG0180002563.01.T01:intron | 25.0% |
| ! | ATGCTTAGTAAAATGGTTTA+CGG | + | Chr1:40449266-40449285 | MsG0180002563.01.T01:CDS | 25.0% |
| ! | CCTAAAATAACATTTAGATG+GGG | + | Chr1:40450330-40450349 | MsG0180002563.01.T01:intron | 25.0% |
| ! | GATTACAAATACAGATTTGT+AGG | - | Chr1:40448666-40448685 | None:intergenic | 25.0% |
| ! | TACTTGACCTTCATATAAAA+GGG | - | Chr1:40449332-40449351 | None:intergenic | 25.0% |
| ! | TTGGTTACAATAGTATGTAT+TGG | - | Chr1:40449836-40449855 | None:intergenic | 25.0% |
| ! | TTTGATGTGTGTATCTTAAA+AGG | - | Chr1:40448593-40448612 | None:intergenic | 25.0% |
| !! | AAATATATGTCATTCTAGGA+AGG | + | Chr1:40450095-40450114 | MsG0180002563.01.T01:intron | 25.0% |
| !! | AACCATATTAGGCAAATTTT+AGG | - | Chr1:40449479-40449498 | None:intergenic | 25.0% |
| !! | TCAACAAAAAGGTTTTTACT+CGG | - | Chr1:40448778-40448797 | None:intergenic | 25.0% |
| !! | TTTTATATGAAGGTCAAGTA+CGG | + | Chr1:40449332-40449351 | MsG0180002563.01.T01:CDS | 25.0% |
| !!! | AAAATTGTTTTGCATCACTA+TGG | + | Chr1:40447979-40447998 | MsG0180002563.01.T01:CDS | 25.0% |
| !!! | AACATGTCGAATGATTTTTT+TGG | + | Chr1:40448721-40448740 | MsG0180002563.01.T01:intron | 25.0% |
| !!! | ATTGACTTTGAAACCATATT+AGG | - | Chr1:40449490-40449509 | None:intergenic | 25.0% |
| !!! | ATTGTGTTATGTGTTTTGTT+AGG | + | Chr1:40450614-40450633 | MsG0180002563.01.T01:intron | 25.0% |
| !!! | TTTTCTTTAGGAATGTATGA+TGG | - | Chr1:40448089-40448108 | None:intergenic | 25.0% |
| AAGAATGTCCTCTTCAAAAA+TGG | + | Chr1:40450669-40450688 | MsG0180002563.01.T01:CDS | 30.0% | |
| AAGTATCCTATTATTGACGT+TGG | + | Chr1:40449356-40449375 | MsG0180002563.01.T01:CDS | 30.0% | |
| AATGAAAGAGTGATAGTTGT+TGG | + | Chr1:40447882-40447901 | MsG0180002563.01.T01:CDS | 30.0% | |
| AATTAAGTCTCGAGAGTTAA+AGG | + | Chr1:40449391-40449410 | MsG0180002563.01.T01:CDS | 30.0% | |
| ACGTTAGAGATAATTGACAT+TGG | + | Chr1:40449415-40449434 | MsG0180002563.01.T01:intron | 30.0% | |
| ATTCAACTGGGTTTAAGAAT+GGG | + | Chr1:40448351-40448370 | MsG0180002563.01.T01:CDS | 30.0% | |
| ATTCATTGGAAGGGAAAAAA+TGG | + | Chr1:40451206-40451225 | MsG0180002563.01.T01:CDS | 30.0% | |
| CACCTAAAATTTGCCTAATA+TGG | + | Chr1:40449474-40449493 | MsG0180002563.01.T01:intron | 30.0% | |
| CTGAATCTGAATTATTCTTC+AGG | - | Chr1:40450482-40450501 | None:intergenic | 30.0% | |
| GAATACCATCATCATTCAAA+AGG | - | Chr1:40451169-40451188 | None:intergenic | 30.0% | |
| GAATAGATCAATATCAGCAA+CGG | + | Chr1:40450867-40450886 | MsG0180002563.01.T01:intron | 30.0% | |
| GGATTATATAAGGAATGGAT+TGG | - | Chr1:40447950-40447969 | None:intergenic | 30.0% | |
| GTACTTGACCTTCATATAAA+AGG | - | Chr1:40449333-40449352 | None:intergenic | 30.0% | |
| TAATAGTTTAAGGACCAAAG+TGG | + | Chr1:40449648-40449667 | MsG0180002563.01.T01:intron | 30.0% | |
| TATATTGTGTTGGACTATCA+AGG | + | Chr1:40451231-40451250 | MsG0180002563.01.T01:CDS | 30.0% | |
| TCGTTTCATCATCAACAAAA+AGG | - | Chr1:40448789-40448808 | None:intergenic | 30.0% | |
| TCTCTTTCGAGGATTATATA+AGG | - | Chr1:40447960-40447979 | None:intergenic | 30.0% | |
| TGCTTAGTAAAATGGTTTAC+GGG | + | Chr1:40449267-40449286 | MsG0180002563.01.T01:CDS | 30.0% | |
| TTCGAGGATTATATAAGGAA+TGG | - | Chr1:40447955-40447974 | None:intergenic | 30.0% | |
| ! | ACTTCATAGATTTTGCATGA+TGG | - | Chr1:40451312-40451331 | None:intergenic | 30.0% |
| ! | ATAATTGACATTGGTTGCTT+TGG | + | Chr1:40449424-40449443 | MsG0180002563.01.T01:intron | 30.0% |
| ! | ATATATGGTCACGTTTCTTT+TGG | - | Chr1:40451082-40451101 | None:intergenic | 30.0% |
| ! | CAAAACAATTTTCTCTTTCG+AGG | - | Chr1:40447971-40447990 | None:intergenic | 30.0% |
| ! | CTTCAATTTCAGGTACAAAA+GGG | - | Chr1:40448301-40448320 | None:intergenic | 30.0% |
| ! | CTTTTGTACCTGAAATTGAA+GGG | + | Chr1:40448300-40448319 | MsG0180002563.01.T01:CDS | 30.0% |
| ! | GATTACCTTTTGAATGATGA+TGG | + | Chr1:40451161-40451180 | MsG0180002563.01.T01:CDS | 30.0% |
| ! | TCGAGACTTAATTTTGTGAA+AGG | - | Chr1:40449384-40449403 | None:intergenic | 30.0% |
| ! | TCTGATGAAGTATTTGTCAA+TGG | + | Chr1:40449220-40449239 | MsG0180002563.01.T01:CDS | 30.0% |
| ! | TTTTTCCCTTCCAATGAATA+GGG | - | Chr1:40451205-40451224 | None:intergenic | 30.0% |
| !! | ATGATCATGTTCTTGTTGTT+GGG | + | Chr1:40448387-40448406 | MsG0180002563.01.T01:CDS | 30.0% |
| !!! | CCCCATCTAAATGTTATTTT+AGG | - | Chr1:40450333-40450352 | None:intergenic | 30.0% |
| !!! | TTTTTTCCCTTCCAATGAAT+AGG | - | Chr1:40451206-40451225 | None:intergenic | 30.0% |
| AAGGCTAAGAATAAGGATTC+TGG | + | Chr1:40448218-40448237 | MsG0180002563.01.T01:CDS | 35.0% | |
| AAGGTTCCAACGTCAATAAT+AGG | - | Chr1:40449365-40449384 | None:intergenic | 35.0% | |
| AAGTTACCCTATTCATTGGA+AGG | + | Chr1:40451196-40451215 | MsG0180002563.01.T01:CDS | 35.0% | |
| AGTATGTGGGGGAATAATTA+CGG | - | Chr1:40449926-40449945 | None:intergenic | 35.0% | |
| AGTTACCCTATTCATTGGAA+GGG | + | Chr1:40451197-40451216 | MsG0180002563.01.T01:CDS | 35.0% | |
| CATTCAACTGGGTTTAAGAA+TGG | + | Chr1:40448350-40448369 | MsG0180002563.01.T01:CDS | 35.0% | |
| CTTAAGCATTCTATTTCAGC+TGG | - | Chr1:40450645-40450664 | None:intergenic | 35.0% | |
| GCTGAAATAGAATGCTTAAG+TGG | + | Chr1:40450645-40450664 | MsG0180002563.01.T01:CDS | 35.0% | |
| GCTTAGTAAAATGGTTTACG+GGG | + | Chr1:40449268-40449287 | MsG0180002563.01.T01:CDS | 35.0% | |
| GGAAAGTGATTCATTCAACT+GGG | + | Chr1:40448339-40448358 | MsG0180002563.01.T01:CDS | 35.0% | |
| TAAGAATAAGGATTCTGGTG+AGG | + | Chr1:40448223-40448242 | MsG0180002563.01.T01:CDS | 35.0% | |
| TCAACTGTTCTGTGATAAAG+AGG | - | Chr1:40448158-40448177 | None:intergenic | 35.0% | |
| TTCCAATGAATAGGGTAACT+TGG | - | Chr1:40451197-40451216 | None:intergenic | 35.0% | |
| ! | AAGGGTTGAAGAGTTTTACT+GGG | + | Chr1:40448318-40448337 | MsG0180002563.01.T01:CDS | 35.0% |
| ! | ATGTATGATGGAAAAGAAGG+TGG | - | Chr1:40448077-40448096 | None:intergenic | 35.0% |
| ! | CCTTCAATTTCAGGTACAAA+AGG | - | Chr1:40448302-40448321 | None:intergenic | 35.0% |
| ! | CCTTTTGTACCTGAAATTGA+AGG | + | Chr1:40448299-40448318 | MsG0180002563.01.T01:CDS | 35.0% |
| ! | CGTTGATTAGATTCTAGTTG+AGG | + | Chr1:40451385-40451404 | MsG0180002563.01.T01:intron | 35.0% |
| ! | GAAGTATTTGTCAATGGAGA+TGG | + | Chr1:40449226-40449245 | MsG0180002563.01.T01:CDS | 35.0% |
| ! | GACTCTATTATTTTCTGCAC+CGG | + | Chr1:40450708-40450727 | MsG0180002563.01.T01:CDS | 35.0% |
| ! | GATGATCATGTTCTTGTTGT+TGG | + | Chr1:40448386-40448405 | MsG0180002563.01.T01:CDS | 35.0% |
| ! | GATGGTGATGCTTAGTAAAA+TGG | + | Chr1:40449259-40449278 | MsG0180002563.01.T01:CDS | 35.0% |
| ! | GGAATATGAAGGAAGGTTTT+TGG | + | Chr1:40448250-40448269 | MsG0180002563.01.T01:CDS | 35.0% |
| ! | GGAATGTATGATGGAAAAGA+AGG | - | Chr1:40448080-40448099 | None:intergenic | 35.0% |
| ! | GTTAGCTGTTGATTATACGT+AGG | + | Chr1:40449072-40449091 | MsG0180002563.01.T01:intron | 35.0% |
| ! | TAAATTTGAGACAGAGCACA+TGG | - | Chr1:40448641-40448660 | None:intergenic | 35.0% |
| ! | TGTATGATGGAAAAGAAGGT+GGG | - | Chr1:40448076-40448095 | None:intergenic | 35.0% |
| !! | ATGATGAAGGTTCTGAGAAA+TGG | + | Chr1:40448189-40448208 | MsG0180002563.01.T01:CDS | 35.0% |
| !! | GCAATTGACCATTTTTGAAG+AGG | - | Chr1:40450680-40450699 | None:intergenic | 35.0% |
| !!! | GCTCGCAAAATTGTTTTTTG+AGG | - | Chr1:40448037-40448056 | None:intergenic | 35.0% |
| AGCCAAGTTACCCTATTCAT+TGG | + | Chr1:40451192-40451211 | MsG0180002563.01.T01:CDS | 40.0% | |
| AGGTTGAGGAATATGAAGGA+AGG | + | Chr1:40448243-40448262 | MsG0180002563.01.T01:CDS | 40.0% | |
| ATATAAAAGGGACCCTCACT+AGG | - | Chr1:40449320-40449339 | None:intergenic | 40.0% | |
| ATGAATAGGGTAACTTGGCT+TGG | - | Chr1:40451192-40451211 | None:intergenic | 40.0% | |
| CTATCAAGGAGAGGTTTCTA+TGG | + | Chr1:40451245-40451264 | MsG0180002563.01.T01:CDS | 40.0% | |
| CTCTTCAACCCTTCAATTTC+AGG | - | Chr1:40448311-40448330 | None:intergenic | 40.0% | |
| GAAGGTGAAGGCTAAGAATA+AGG | + | Chr1:40448211-40448230 | MsG0180002563.01.T01:CDS | 40.0% | |
| GAGAATGCAGAGTATGATGA+AGG | + | Chr1:40448176-40448195 | MsG0180002563.01.T01:CDS | 40.0% | |
| GCATTGGATCTTATCAACCA+TGG | + | Chr1:40448434-40448453 | MsG0180002563.01.T01:CDS | 40.0% | |
| GGGAAAGTGATTCATTCAAC+TGG | + | Chr1:40448338-40448357 | MsG0180002563.01.T01:CDS | 40.0% | |
| GTAAACCTTAAGCCACTTGT+GGG | - | Chr1:40450748-40450767 | None:intergenic | 40.0% | |
| GTATGTGGGGGAATAATTAC+GGG | - | Chr1:40449925-40449944 | None:intergenic | 40.0% | |
| GTATTTGTCAATGGAGATGG+TGG | + | Chr1:40449229-40449248 | MsG0180002563.01.T01:CDS | 40.0% | |
| GTTGTTGTGACATGACGAAT+GGG | + | Chr1:40450590-40450609 | MsG0180002563.01.T01:intron | 40.0% | |
| TAATTGACGGGATGAATGAG+TGG | + | Chr1:40449009-40449028 | MsG0180002563.01.T01:intron | 40.0% | |
| TATGTGGGGGAATAATTACG+GGG | - | Chr1:40449924-40449943 | None:intergenic | 40.0% | |
| TCAATAGATCAACCCACAAG+TGG | + | Chr1:40450733-40450752 | MsG0180002563.01.T01:CDS | 40.0% | |
| TGAATAGGGTAACTTGGCTT+GGG | - | Chr1:40451191-40451210 | None:intergenic | 40.0% | |
| TGTAAACCTTAAGCCACTTG+TGG | - | Chr1:40450749-40450768 | None:intergenic | 40.0% | |
| TGTTGTTGTGACATGACGAA+TGG | + | Chr1:40450589-40450608 | MsG0180002563.01.T01:intron | 40.0% | |
| TTCAATCGTTGTTCGAAGCA+AGG | + | Chr1:40448466-40448485 | MsG0180002563.01.T01:CDS | 40.0% | |
| TTCTGGCATGGAAATTGCAT+TGG | + | Chr1:40448418-40448437 | MsG0180002563.01.T01:CDS | 40.0% | |
| ! | CAGGTTCACATTTTGTCAAG+GGG | + | Chr1:40449176-40449195 | MsG0180002563.01.T01:intron | 40.0% |
| ! | GAAGGGTTGAAGAGTTTTAC+TGG | + | Chr1:40448317-40448336 | MsG0180002563.01.T01:CDS | 40.0% |
| ! | GCAGGTTCACATTTTGTCAA+GGG | + | Chr1:40449175-40449194 | MsG0180002563.01.T01:intron | 40.0% |
| ! | TCAAGGGGTATGCTGAATTT+GGG | + | Chr1:40449191-40449210 | MsG0180002563.01.T01:CDS | 40.0% |
| ! | TGAGGGTCCCTTTTATATGA+AGG | + | Chr1:40449322-40449341 | MsG0180002563.01.T01:CDS | 40.0% |
| ! | TGCAGGTTCACATTTTGTCA+AGG | + | Chr1:40449174-40449193 | MsG0180002563.01.T01:intron | 40.0% |
| ! | TTCTGAGAAATGGAAGGTGA+AGG | + | Chr1:40448199-40448218 | MsG0180002563.01.T01:CDS | 40.0% |
| !! | ATGTTCTTGTTGTTGGGTCT+GGG | + | Chr1:40448393-40448412 | MsG0180002563.01.T01:CDS | 40.0% |
| !! | CGATTGAAGTTTTAGCACCA+TGG | - | Chr1:40448454-40448473 | None:intergenic | 40.0% |
| !! | GGTGAGAGAGTATTGGTTTA+AGG | + | Chr1:40449669-40449688 | MsG0180002563.01.T01:intron | 40.0% |
| !! | TGAAGGTTCTGAGAAATGGA+AGG | + | Chr1:40448193-40448212 | MsG0180002563.01.T01:CDS | 40.0% |
| !!! | TGAAGGAAGGTTTTTGGTTG+TGG | + | Chr1:40448256-40448275 | MsG0180002563.01.T01:CDS | 40.0% |
| AATCTTACCACCTTCCGTGA+AGG | - | Chr1:40448902-40448921 | None:intergenic | 45.0% | |
| ACGGGGATGTCACGAATTAT+GGG | + | Chr1:40449285-40449304 | MsG0180002563.01.T01:CDS | 45.0% | |
| ACGGGGATGTCACGAATTAT+GGG | - | Chr1:40449304-40449285 | None:intergenic | 45.0% | |
| AGAGTGATAGTTGTTGGAGC+AGG | + | Chr1:40447888-40447907 | MsG0180002563.01.T01:CDS | 45.0% | |
| ATCAACCCACAAGTGGCTTA+AGG | + | Chr1:40450740-40450759 | MsG0180002563.01.T01:CDS | 45.0% | |
| ATCTTACCACCTTCCGTGAA+GGG | - | Chr1:40448901-40448920 | None:intergenic | 45.0% | |
| CCAATACTCTCTCACCACTT+TGG | - | Chr1:40449665-40449684 | None:intergenic | 45.0% | |
| CTTCCGTGAAGGGAATATGT+GGG | - | Chr1:40448891-40448910 | None:intergenic | 45.0% | |
| GATGGAAAAGAAGGTGGGAA+TGG | - | Chr1:40448071-40448090 | None:intergenic | 45.0% | |
| GATGTCACGAATTATGGGGT+TGG | + | Chr1:40449290-40449309 | MsG0180002563.01.T01:CDS | 45.0% | |
| GGTGAGGTTGAGGAATATGA+AGG | + | Chr1:40448239-40448258 | MsG0180002563.01.T01:CDS | 45.0% | |
| TAAGGATTCTGGTGAGGTTG+AGG | + | Chr1:40448229-40448248 | MsG0180002563.01.T01:CDS | 45.0% | |
| TACGGGGATGTCACGAATTA+TGG | + | Chr1:40449284-40449303 | MsG0180002563.01.T01:CDS | 45.0% | |
| TACGGGGATGTCACGAATTA+TGG | - | Chr1:40449303-40449284 | None:intergenic | 45.0% | |
| TGTGTTGGACTATCAAGGAG+AGG | + | Chr1:40451236-40451255 | MsG0180002563.01.T01:CDS | 45.0% | |
| TTCCCCACATATTCCCTTCA+CGG | + | Chr1:40448885-40448904 | MsG0180002563.01.T01:intron | 45.0% | |
| TTCCGTGAAGGGAATATGTG+GGG | - | Chr1:40448890-40448909 | None:intergenic | 45.0% | |
| ! | CAAGGGGTATGCTGAATTTG+GGG | + | Chr1:40449192-40449211 | MsG0180002563.01.T01:CDS | 45.0% |
| ! | CCAAAGTGGTGAGAGAGTAT+TGG | + | Chr1:40449662-40449681 | MsG0180002563.01.T01:intron | 45.0% |
| ! | GTCAAGGGGTATGCTGAATT+TGG | + | Chr1:40449190-40449209 | MsG0180002563.01.T01:CDS | 45.0% |
| ! | TCACGAATTATGGGGTTGGT+AGG | + | Chr1:40449294-40449313 | MsG0180002563.01.T01:CDS | 45.0% |
| ! | TCAGGCGAGTTACTTTGCTT+GGG | - | Chr1:40450464-40450483 | None:intergenic | 45.0% |
| ! | TTCAGGCGAGTTACTTTGCT+TGG | - | Chr1:40450465-40450484 | None:intergenic | 45.0% |
| !! | CATGTTCTTGTTGTTGGGTC+TGG | + | Chr1:40448392-40448411 | MsG0180002563.01.T01:CDS | 45.0% |
| !! | GGAGATGGTGGATTTAGTGA+TGG | + | Chr1:40449241-40449260 | MsG0180002563.01.T01:CDS | 45.0% |
| !! | GTGGGTTGATCTATTGAAGC+CGG | - | Chr1:40450730-40450749 | None:intergenic | 45.0% |
| !!! | AGGTTTTTGGTTGTGGCTAG+TGG | + | Chr1:40448263-40448282 | MsG0180002563.01.T01:CDS | 45.0% |
| CATATTCCCTTCACGGAAGG+TGG | + | Chr1:40448892-40448911 | MsG0180002563.01.T01:intron | 50.0% | |
| CCACATATTCCCTTCACGGA+AGG | + | Chr1:40448889-40448908 | MsG0180002563.01.T01:intron | 50.0% | |
| CCTTCCGTGAAGGGAATATG+TGG | - | Chr1:40448892-40448911 | None:intergenic | 50.0% | |
| CGGGGATGTCACGAATTATG+GGG | + | Chr1:40449286-40449305 | MsG0180002563.01.T01:CDS | 50.0% | |
| CGGGGATGTCACGAATTATG+GGG | - | Chr1:40449305-40449286 | None:intergenic | 50.0% | |
| CTGCTACTGAGAGACCAGAA+GGG | - | Chr1:40447914-40447933 | None:intergenic | 50.0% | |
| GTTGTTGGGTCTGGGAATTC+TGG | + | Chr1:40448401-40448420 | MsG0180002563.01.T01:CDS | 50.0% | |
| ! | CAGGCGAGTTACTTTGCTTG+GGG | - | Chr1:40450463-40450482 | None:intergenic | 50.0% |
| ! | GAAGGTGGGAATGGTTTGTG+AGG | - | Chr1:40448062-40448081 | None:intergenic | 50.0% |
| GCTGCTACTGAGAGACCAGA+AGG | - | Chr1:40447915-40447934 | None:intergenic | 55.0% | |
| TGGGTCTGGGAATTCTGGCA+TGG | + | Chr1:40448406-40448425 | MsG0180002563.01.T01:CDS | 55.0% | |
| GTTGTTGGAGCAGGCCCTTC+TGG | + | Chr1:40447897-40447916 | MsG0180002563.01.T01:CDS | 60.0% | |
| !! | GGGGTTGGTAGGCCTAGTGA+GGG | + | Chr1:40449305-40449324 | MsG0180002563.01.T01:CDS | 60.0% |
| !! | TGGGGTTGGTAGGCCTAGTG+AGG | + | Chr1:40449304-40449323 | MsG0180002563.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 40447849 | 40451427 | 40447849 | ID=MsG0180002563.01;Name=MsG0180002563.01 |
| Chr1 | mRNA | 40447849 | 40451427 | 40447849 | ID=MsG0180002563.01.T01;Parent=MsG0180002563.01;Name=MsG0180002563.01.T01;_AED=0.50;_eAED=0.50;_QI=21|0.75|0.6|1|1|1|5|0|385 |
| Chr1 | exon | 40447849 | 40448487 | 40447849 | ID=MsG0180002563.01.T01:exon:37134;Parent=MsG0180002563.01.T01 |
| Chr1 | exon | 40449179 | 40449412 | 40449179 | ID=MsG0180002563.01.T01:exon:37135;Parent=MsG0180002563.01.T01 |
| Chr1 | exon | 40450636 | 40450761 | 40450636 | ID=MsG0180002563.01.T01:exon:37136;Parent=MsG0180002563.01.T01 |
| Chr1 | exon | 40451155 | 40451301 | 40451155 | ID=MsG0180002563.01.T01:exon:37137;Parent=MsG0180002563.01.T01 |
| Chr1 | exon | 40451395 | 40451427 | 40451395 | ID=MsG0180002563.01.T01:exon:37138;Parent=MsG0180002563.01.T01 |
| Chr1 | five_prime_UTR | 40447849 | 40447869 | 40447849 | ID=MsG0180002563.01.T01:five_prime_utr;Parent=MsG0180002563.01.T01 |
| Chr1 | CDS | 40447870 | 40448487 | 40447870 | ID=MsG0180002563.01.T01:cds;Parent=MsG0180002563.01.T01 |
| Chr1 | CDS | 40449179 | 40449412 | 40449179 | ID=MsG0180002563.01.T01:cds;Parent=MsG0180002563.01.T01 |
| Chr1 | CDS | 40450636 | 40450761 | 40450636 | ID=MsG0180002563.01.T01:cds;Parent=MsG0180002563.01.T01 |
| Chr1 | CDS | 40451155 | 40451301 | 40451155 | ID=MsG0180002563.01.T01:cds;Parent=MsG0180002563.01.T01 |
| Chr1 | CDS | 40451395 | 40451427 | 40451395 | ID=MsG0180002563.01.T01:cds;Parent=MsG0180002563.01.T01 |
| Gene Sequence |
| Protein sequence |
