AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030293.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030293.01.T01 MTR_6g004180 98.905 274 3 0 1 274 1 274 0.0 541
MsG0680030293.01.T01 MTR_6g004180 98.905 274 3 0 1 274 34 307 0.0 540
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030293.01.T01 AT1G09760 78.298 235 50 1 1 235 1 234 3.18e-128 369

Find 80 sgRNAs with CRISPR-Local

Find 460 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATGAAAATGAGATTTC+TGG 0.166283 6:-193627 MsG0680030293.01.T01:CDS
AGAGCAAATTATTGCTATTA+AGG 0.211984 6:-198158 MsG0680030293.01.T01:intron
ATCCAACTCGCGCTCTTTAA+TGG 0.228091 6:+199536 None:intergenic
CGACAATGAGATTGTCAAAT+TGG 0.231901 6:-199227 MsG0680030293.01.T01:CDS
CAAATCATACCTCCAATATT+AGG 0.247606 6:+199136 None:intergenic
GCTGAAATCCCTCCGAGTTT+TGG 0.276825 6:-198864 MsG0680030293.01.T01:CDS
ACTAGAATTAATCCTAATAT+TGG 0.297232 6:-199148 MsG0680030293.01.T01:CDS
ATATCTGTAATCGAAAATTT+AGG 0.313621 6:-199498 MsG0680030293.01.T01:CDS
TTCACCGATTCGTGGTGTTC+CGG 0.324648 6:-200502 MsG0680030293.01.T01:five_prime_UTR
TGTGTATCTTTAGATTCATC+AGG 0.370931 6:+196042 None:intergenic
CACTACTCATTAACAACAAC+AGG 0.386369 6:-199174 MsG0680030293.01.T01:CDS
GACTCACTGCTGACCTGATC+TGG 0.386465 6:-199581 MsG0680030293.01.T01:CDS
GTACCCAATCGGTTAAGATT+TGG 0.397742 6:+199196 None:intergenic
CCGATCATTTAGCATGACTA+TGG 0.398151 6:+193512 None:intergenic
AGACTAAGGAACTGCAGCTT+TGG 0.400575 6:+198941 None:intergenic
AGACTTTCAAAGGCCAAGAT+TGG 0.412974 6:+193547 None:intergenic
CAATTTGACAATCTCATTGT+CGG 0.414263 6:+199228 None:intergenic
CCATCTTCTTGTTGTTAGAC+AGG 0.417280 6:+193466 None:intergenic
TACCGTTTGAGTCTCTTATT+AGG 0.418591 6:-200558 None:intergenic
CTAACTCGTTGATCAACTTA+AGG 0.420254 6:-195049 MsG0680030293.01.T01:intron
ATAAATCTACTGTGTCAAAT+TGG 0.424527 6:+199251 None:intergenic
CATCTAACTCGTTGAAGGTC+TGG 0.426866 6:-195073 MsG0680030293.01.T01:CDS
TGTCAAAGATTCTCCAATCT+TGG 0.429445 6:-193560 MsG0680030293.01.T01:CDS
GAAACATCTGGAGTTTCAAC+AGG 0.431038 6:+198229 None:intergenic
TTAATAGCAATAATTTGCTC+TGG 0.437146 6:+198160 None:intergenic
TCCGTAGCTTCTGAAACATC+TGG 0.448794 6:+198217 None:intergenic
AGTAATATTTCTACGATTCG+TGG 0.449566 6:-193667 MsG0680030293.01.T01:CDS
AGAAGATGGTAATATTTAGC+AGG 0.453837 6:-193452 MsG0680030293.01.T01:CDS
TTACCAAATCTTAACCGATT+GGG 0.454175 6:-199199 MsG0680030293.01.T01:CDS
TGATTCTACTGCAATGGAAC+AGG 0.456679 6:-196004 MsG0680030293.01.T01:intron
TGTTAACAGGCACTGAAGTC+TGG 0.458610 6:-196141 MsG0680030293.01.T01:intron
AGAAAAGTGAGGAGAAGAGA+GGG 0.462942 6:+200525 None:intergenic
TTGACATGCTTATGCTCTCT+AGG 0.463942 6:+193577 None:intergenic
GGAGTAGGAGGAGTCACTTT+GGG 0.464413 6:+198181 None:intergenic
AGAACTAGTGTGTGTAAATT+CGG 0.472213 6:+199016 None:intergenic
CTTACCAAATCTTAACCGAT+TGG 0.476759 6:-199200 MsG0680030293.01.T01:CDS
AAGTTCATCTAACTCGTTGA+AGG 0.479945 6:-195078 MsG0680030293.01.T01:CDS
AAGAAAAGTGAGGAGAAGAG+AGG 0.481977 6:+200524 None:intergenic
CACTAGTTCTCACAAACAAC+AGG 0.490673 6:-199003 MsG0680030293.01.T01:CDS
TGGAGTAGGAGGAGTCACTT+TGG 0.492825 6:+198180 None:intergenic
AGATGTCGCTAGACTTGAAA+AGG 0.495048 6:-196765 MsG0680030293.01.T01:intron
TTAATGGTATTGAAGAAATG+AGG 0.495834 6:+199552 None:intergenic
CATAGTCATGCTAAATGATC+GGG 0.498557 6:-193511 MsG0680030293.01.T01:CDS
CTTTCTTGAAGTCCAAAACT+CGG 0.500459 6:+198852 None:intergenic
CCATAGTCATGCTAAATGAT+CGG 0.517992 6:-193512 MsG0680030293.01.T01:CDS
CATGCTAAATGATCGGGCAT+TGG 0.519632 6:-193505 MsG0680030293.01.T01:CDS
GCAATAATTTGCTCTGGAGT+AGG 0.520654 6:+198166 None:intergenic
AGAATTAATCCTAATATTGG+AGG 0.520985 6:-199145 MsG0680030293.01.T01:intron
TAAGGAACTGCAGCTTTGGA+AGG 0.529538 6:+198945 None:intergenic
TCCAGATGTTTCAGAAGCTA+CGG 0.537922 6:-198218 MsG0680030293.01.T01:CDS
TCACAGACACGACGGAGGAA+CGG 0.544393 6:+200470 None:intergenic
CTTGAAGTCCAAAACTCGGA+GGG 0.545316 6:+198856 None:intergenic
CCTGTCTAACAACAAGAAGA+TGG 0.546704 6:-193466 MsG0680030293.01.T01:CDS
TAATGAGTAGTGTACCCAAT+CGG 0.554266 6:+199185 None:intergenic
GCATTGGATGAGAAATCGCT+TGG 0.558494 6:-193489 MsG0680030293.01.T01:CDS
GTGACCGGAACACCACGAAT+CGG 0.559955 6:+200498 None:intergenic
GGAGGAACGGAAAGAGTGAC+CGG 0.560444 6:+200483 None:intergenic
ATAATTTGCTCTGGAGTAGG+AGG 0.561611 6:+198169 None:intergenic
CTTCAAGAAAGTGAAAGATA+AGG 0.562596 6:-198840 MsG0680030293.01.T01:intron
TAATACTGATTCTACTGCAA+TGG 0.563664 6:-196010 MsG0680030293.01.T01:CDS
TATTGTTGTCAAGAAGACTA+AGG 0.567496 6:+198927 None:intergenic
TACCATTAAAGAGCGCGAGT+TGG 0.572232 6:-199538 MsG0680030293.01.T01:CDS
TAGCATGACTATGGCTAGAT+CGG 0.574216 6:+193521 None:intergenic
CTCGGAGGGATTTCAGCTTG+TGG 0.583753 6:+198870 None:intergenic
TCTGGAGTTTCAACAGGCGC+TGG 0.587258 6:+198235 None:intergenic
CTAGTGTGTGTAAATTCGGT+AGG 0.599258 6:+199020 None:intergenic
CATGACTATGGCTAGATCGG+TGG 0.606820 6:+193524 None:intergenic
GAAGATGGTAATATTTAGCA+GGG 0.608051 6:-193451 MsG0680030293.01.T01:CDS
AAGAGTCTGTGAACTAACAA+TGG 0.608620 6:+196790 None:intergenic
AAGGAACTGCAGCTTTGGAA+GGG 0.618926 6:+198946 None:intergenic
AGATCGGTGGAGACTTTCAA+AGG 0.632518 6:+193537 None:intergenic
AGCTTTGGAAGGGATGTCAA+AGG 0.641417 6:+198956 None:intergenic
GATAATATTGCATACCTCTG+TGG 0.644475 6:+199473 None:intergenic
CGAAAATTTAGGTGCCACAG+AGG 0.647646 6:-199487 MsG0680030293.01.T01:intron
TCTTGAAGTCCAAAACTCGG+AGG 0.658139 6:+198855 None:intergenic
AGATGTTTCAGAAGCTACGG+AGG 0.681835 6:-198215 MsG0680030293.01.T01:CDS
AGAAGTACTCACAGACACGA+CGG 0.683884 6:+200462 None:intergenic
GAATCGGTGAAAGAAAAGTG+AGG 0.698009 6:+200514 None:intergenic
GAGCGCGAGTTGGATCTGAG+AGG 0.748692 6:-199528 MsG0680030293.01.T01:CDS
AGTACTCACAGACACGACGG+AGG 0.750436 6:+200465 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAATAGTTACA+AGG + Chr6:194555-194574 None:intergenic 10.0%
!! AAAGAATAGTAATAAAATAA+TGG + Chr6:198192-198211 None:intergenic 10.0%
!! AGAATTAAAAATAGAATAAT+AGG + Chr6:196346-196365 None:intergenic 10.0%
!! GAAAAATATATATATTTGTA+TGG - Chr6:193856-193875 MsG0680030293.01.T01:intron 10.0%
!!! CATTTTTGTTTATATTATTT+CGG + Chr6:199848-199867 None:intergenic 10.0%
!!! TTTTCTTAAAATTATATTTG+TGG - Chr6:195540-195559 MsG0680030293.01.T01:intron 10.0%
!! AAAATAATATGAATTCCATT+TGG - Chr6:194184-194203 MsG0680030293.01.T01:intron 15.0%
!! AAATAATATGAATTCCATTT+GGG - Chr6:194185-194204 MsG0680030293.01.T01:intron 15.0%
!! AATAGTAATAAAATAATGGT+TGG + Chr6:198188-198207 None:intergenic 15.0%
!! ATAGTAATAAAATAATGGTT+GGG + Chr6:198187-198206 None:intergenic 15.0%
!! ATATATAAGAAATCTATACT+AGG + Chr6:197791-197810 None:intergenic 15.0%
!! CAAAAAAAAAAAAACGAAAA+TGG - Chr6:195607-195626 MsG0680030293.01.T01:intron 15.0%
!! CAAAATTTGTAGAAATAAAT+TGG - Chr6:199750-199769 MsG0680030293.01.T01:intron 15.0%
!! CTAATATGTATAATGTTTAA+TGG - Chr6:199377-199396 MsG0680030293.01.T01:intron 15.0%
!! CTTATAATGATCTTAAAATA+TGG + Chr6:200148-200167 None:intergenic 15.0%
!! TAAATTCATTATCAGTTTAA+TGG + Chr6:196489-196508 None:intergenic 15.0%
!! TGAAATATAAGTAAATACTT+TGG + Chr6:199934-199953 None:intergenic 15.0%
!! TTAAGCATATTAAAAAAGAA+GGG - Chr6:199178-199197 MsG0680030293.01.T01:CDS 15.0%
!! TTACAAAAAAAGTGAATTAT+AGG - Chr6:195088-195107 MsG0680030293.01.T01:intron 15.0%
!! TTTAAGCATATTAAAAAAGA+AGG - Chr6:199177-199196 MsG0680030293.01.T01:CDS 15.0%
!!! AAACTAAATCTTTCTTTTTT+TGG - Chr6:199291-199310 MsG0680030293.01.T01:intron 15.0%
!!! ATACTTTTTCAGAATTTTTT+TGG + Chr6:199502-199521 None:intergenic 15.0%
!!! ATTTTCATTGATTAACTTAA+TGG + Chr6:200357-200376 None:intergenic 15.0%
!!! CTGAAAAAGTATTATAATTA+AGG - Chr6:199510-199529 MsG0680030293.01.T01:CDS 15.0%
!!! TTAAGTATTGTTTTTGTTTT+AGG - Chr6:197292-197311 MsG0680030293.01.T01:intron 15.0%
!!! TTTGATATTTTCTTTAACTA+AGG - Chr6:197052-197071 MsG0680030293.01.T01:intron 15.0%
!! AAAAAAAAAAACGAAAATGG+TGG - Chr6:195610-195629 MsG0680030293.01.T01:intron 20.0%
!! AACCAAAGAAAAGATAAATA+TGG + Chr6:195199-195218 None:intergenic 20.0%
!! ACAAGTATAATTACATATCA+TGG + Chr6:198084-198103 None:intergenic 20.0%
!! ACATAGTTATATACTATGTA+TGG + Chr6:196996-197015 None:intergenic 20.0%
!! ACCAAAGAAAAGATAAATAT+GGG + Chr6:195198-195217 None:intergenic 20.0%
!! ACTAGAATTAATCCTAATAT+TGG - Chr6:194844-194863 MsG0680030293.01.T01:intron 20.0%
!! ACTATATATGTTTCTTTAAC+CGG + Chr6:199213-199232 None:intergenic 20.0%
!! AGTTAAAGAAAATATCAAAC+AGG + Chr6:197051-197070 None:intergenic 20.0%
!! ATAAGATTCATTCATTCAAA+TGG - Chr6:200071-200090 MsG0680030293.01.T01:intron 20.0%
!! ATATCTGTAATCGAAAATTT+AGG - Chr6:194494-194513 MsG0680030293.01.T01:intron 20.0%
!! ATTAGATAATCATTCATTTC+TGG - Chr6:197265-197284 MsG0680030293.01.T01:intron 20.0%
!! CAAACAAAAATGCATAAAAA+AGG + Chr6:195923-195942 None:intergenic 20.0%
!! CAATACAGAATTAATCAAAT+GGG + Chr6:196717-196736 None:intergenic 20.0%
!! GAGTAAATTAATAATGTATG+TGG - Chr6:199558-199577 MsG0680030293.01.T01:CDS 20.0%
!! GATTATTTATGCTTCATTAT+GGG - Chr6:193885-193904 MsG0680030293.01.T01:intron 20.0%
!! GCTTAATTAACTGTAATTAT+AGG + Chr6:198218-198237 None:intergenic 20.0%
!! TAATGATCTTAAAATATGGA+TGG + Chr6:200144-200163 None:intergenic 20.0%
!! TGATTATTTATGCTTCATTA+TGG - Chr6:193884-193903 MsG0680030293.01.T01:intron 20.0%
!! TTATAATTATCTGCATTTGA+GGG - Chr6:196612-196631 MsG0680030293.01.T01:intron 20.0%
!! TTGTAAAATGAATTTAACTG+TGG - Chr6:196383-196402 MsG0680030293.01.T01:intron 20.0%
!! TTTATAATTATCTGCATTTG+AGG - Chr6:196611-196630 MsG0680030293.01.T01:intron 20.0%
!!! AAAGTTGTTTAATTTCATGT+GGG - Chr6:193666-193685 MsG0680030293.01.T01:CDS 20.0%
!!! TAAGCAAAAATTCACTTTTT+AGG + Chr6:199622-199641 None:intergenic 20.0%
!!! TCAACAATAAGTTGAAAATT+AGG - Chr6:200273-200292 MsG0680030293.01.T01:intron 20.0%
!!! TCTTAGATGGTTTTATAATT+GGG - Chr6:198535-198554 MsG0680030293.01.T01:intron 20.0%
!!! TGAATTTTCTATGCTTTATA+TGG - Chr6:193580-193599 MsG0680030293.01.T01:CDS 20.0%
!!! TTCATATTATTTTCATGTCA+AGG + Chr6:194177-194196 None:intergenic 20.0%
!!! TTCTTAGATGGTTTTATAAT+TGG - Chr6:198534-198553 MsG0680030293.01.T01:intron 20.0%
! AATAGAATAATAGGTACTTC+AGG + Chr6:196337-196356 None:intergenic 25.0%
! AATTCATGAACATATCAAGT+AGG + Chr6:194690-194709 None:intergenic 25.0%
! AATTTACTCATATTTGTGAC+CGG + Chr6:199547-199566 None:intergenic 25.0%
! ACAACTTGAATGAATCATTA+GGG - Chr6:198627-198646 MsG0680030293.01.T01:intron 25.0%
! ACAGTTTAACACTAGAAAAA+TGG + Chr6:199818-199837 None:intergenic 25.0%
! AGAATTAATCCTAATATTGG+AGG - Chr6:194847-194866 MsG0680030293.01.T01:intron 25.0%
! AGTATAATTACATATCATGG+AGG + Chr6:198081-198100 None:intergenic 25.0%
! AGTTGAAATTATGCTATAAG+TGG - Chr6:196670-196689 MsG0680030293.01.T01:intron 25.0%
! ATAAATCTACTGTGTCAAAT+TGG + Chr6:194744-194763 None:intergenic 25.0%
! ATAGACGTAATAGTATTAAG+TGG - Chr6:198844-198863 MsG0680030293.01.T01:CDS 25.0%
! ATAGCAAAACTACAATCAAA+AGG - Chr6:200098-200117 MsG0680030293.01.T01:intron 25.0%
! ATAGCATAATTTCAACTTGT+AGG + Chr6:196667-196686 None:intergenic 25.0%
! ATAGGACATAGTCAATTATT+TGG - Chr6:198712-198731 MsG0680030293.01.T01:intron 25.0%
! ATCAATGAAAATGAGATTTC+TGG - Chr6:200365-200384 MsG0680030293.01.T01:intron 25.0%
! ATCTCTTTATATGAAGAACA+TGG + Chr6:198744-198763 None:intergenic 25.0%
! ATCTTACAAATAGCAACAAA+CGG + Chr6:199146-199165 None:intergenic 25.0%
! CAAAGATAGAAAACATGTAT+TGG + Chr6:199784-199803 None:intergenic 25.0%
! CAATTGTGTATGAATTGTTT+AGG - Chr6:198335-198354 MsG0680030293.01.T01:intron 25.0%
! CATATATAGTAATACTGCAT+TGG - Chr6:199223-199242 MsG0680030293.01.T01:CDS 25.0%
! CATTCAATAAATGATGTATG+TGG + Chr6:199597-199616 None:intergenic 25.0%
! CCAATACAGAATTAATCAAA+TGG + Chr6:196718-196737 None:intergenic 25.0%
! CCATTTGATTAATTCTGTAT+TGG - Chr6:196715-196734 MsG0680030293.01.T01:intron 25.0%
! GAAACATTCTTCAAACTAAT+AGG - Chr6:198694-198713 MsG0680030293.01.T01:intron 25.0%
! GACAATGCATAATATATACA+AGG - Chr6:199451-199470 MsG0680030293.01.T01:intron 25.0%
! GATACATTATTACTAACATG+AGG + Chr6:198398-198417 None:intergenic 25.0%
! GTTGAAATTATGCTATAAGT+GGG - Chr6:196671-196690 MsG0680030293.01.T01:intron 25.0%
! TACAACTTGAATGAATCATT+AGG - Chr6:198626-198645 MsG0680030293.01.T01:intron 25.0%
! TACACTGTTAATTCTTTCTT+GGG + Chr6:199356-199375 None:intergenic 25.0%
! TATACTTGTTCAGAACTAAT+TGG - Chr6:198095-198114 MsG0680030293.01.T01:intron 25.0%
! TATGTATGGCTTACTATAAT+AGG + Chr6:196982-197001 None:intergenic 25.0%
! TATTCTGGATTATAGCAAAA+TGG - Chr6:197083-197102 MsG0680030293.01.T01:intron 25.0%
! TCTCTAATATAGCTTACAAA+AGG + Chr6:193999-194018 None:intergenic 25.0%
! TGCAACAAAAAGTAAACTTA+GGG + Chr6:197394-197413 None:intergenic 25.0%
! TGTTGTTAGGATTTGAATAT+TGG + Chr6:200226-200245 None:intergenic 25.0%
! TTACACTGTTAATTCTTTCT+TGG + Chr6:199357-199376 None:intergenic 25.0%
! TTCATTCTAAATTGAACACA+GGG + Chr6:195881-195900 None:intergenic 25.0%
! TTGCAACAAAAAGTAAACTT+AGG + Chr6:197395-197414 None:intergenic 25.0%
! TTGTGAAGTCAACTATTTAA+AGG - Chr6:199249-199268 MsG0680030293.01.T01:CDS 25.0%
!! AACTGATAATGAATTTAGTC+AGG - Chr6:196492-196511 MsG0680030293.01.T01:intron 25.0%
!! AAGTTGTTTAATTTCATGTG+GGG - Chr6:193667-193686 MsG0680030293.01.T01:CDS 25.0%
!! ACCCATATTTATCTTTTCTT+TGG - Chr6:195194-195213 MsG0680030293.01.T01:intron 25.0%
!! AGAGCAAATTATTGCTATTA+AGG - Chr6:195834-195853 MsG0680030293.01.T01:intron 25.0%
!! CAAAGTTGTTTAATTTCATG+TGG - Chr6:193665-193684 MsG0680030293.01.T01:CDS 25.0%
!! CAATACATGTTTTCTATCTT+TGG - Chr6:199782-199801 MsG0680030293.01.T01:intron 25.0%
!! GAAAAACTTGTTTGAATCAA+AGG - Chr6:195708-195727 MsG0680030293.01.T01:intron 25.0%
!! TGACATATCATCAGTTATTT+TGG + Chr6:197816-197835 None:intergenic 25.0%
!! TTAATGGTATTGAAGAAATG+AGG + Chr6:194443-194462 None:intergenic 25.0%
!! TTGATTAATTCTGTATTGGT+TGG - Chr6:196719-196738 MsG0680030293.01.T01:intron 25.0%
!! TTTAGGCTTAATTACACTTT+TGG - Chr6:197309-197328 MsG0680030293.01.T01:intron 25.0%
!! TTTCATTACATTCTTTTTGC+AGG - Chr6:198423-198442 MsG0680030293.01.T01:intron 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG - Chr6:199632-199651 MsG0680030293.01.T01:intron 25.0%
!!! AAAGAGTTGTTTTTTTTAGG+GGG - Chr6:197570-197589 MsG0680030293.01.T01:intron 25.0%
!!! ATAAGTTTTGTGAGACTAAT+TGG + Chr6:194090-194109 None:intergenic 25.0%
!!! ATTTGGGTTGTAGTAATAAT+GGG - Chr6:194201-194220 MsG0680030293.01.T01:intron 25.0%
!!! CTTAGATGGTTTTATAATTG+GGG - Chr6:198536-198555 MsG0680030293.01.T01:intron 25.0%
!!! CTTTTTCAGAATTTTTTTGG+TGG + Chr6:199499-199518 None:intergenic 25.0%
!!! GAAAGAGTTGTTTTTTTAGA+GGG + Chr6:197366-197385 None:intergenic 25.0%
!!! GAAAGAGTTGTTTTTTTTAG+GGG - Chr6:197569-197588 MsG0680030293.01.T01:intron 25.0%
!!! GGAAAGAGTTGTTTTTTTTA+GGG - Chr6:197568-197587 MsG0680030293.01.T01:intron 25.0%
!!! TACTTTTTGACTCGAAATTA+GGG + Chr6:197467-197486 None:intergenic 25.0%
!!! TCAGTTAAATAGTTTTGACA+GGG - Chr6:194645-194664 MsG0680030293.01.T01:intron 25.0%
!!! TGGAAAGAGTTGTTTTTTTT+AGG - Chr6:197567-197586 MsG0680030293.01.T01:intron 25.0%
!!! TTAATAGCAATAATTTGCTC+TGG + Chr6:195835-195854 None:intergenic 25.0%
!!! TTACTTTTTGACTCGAAATT+AGG + Chr6:197468-197487 None:intergenic 25.0%
!!! TTAGATGGTTTTATAATTGG+GGG - Chr6:198537-198556 MsG0680030293.01.T01:intron 25.0%
!!! TTCAGTTAAATAGTTTTGAC+AGG - Chr6:194644-194663 MsG0680030293.01.T01:intron 25.0%
!!! TTTTGCTATAATCCAGAATA+AGG + Chr6:197083-197102 None:intergenic 25.0%
!!! TTTTTTAATGTGTGCTCTTA+AGG + Chr6:199692-199711 None:intergenic 25.0%
AAAAGAAGGGAAATGTTAAC+CGG - Chr6:199191-199210 MsG0680030293.01.T01:CDS 30.0%
AACTATAAAACACATCGCAA+GGG - Chr6:196519-196538 MsG0680030293.01.T01:intron 30.0%
AACTTGATCAGTTAAGTTCA+AGG - Chr6:198967-198986 MsG0680030293.01.T01:CDS 30.0%
AAGAAACATGTAAAACCACA+GGG + Chr6:197168-197187 None:intergenic 30.0%
AATAGGAACGAAAACAAATC+TGG - Chr6:198999-199018 MsG0680030293.01.T01:CDS 30.0%
ACTATATCTTGTGATAGTAC+AGG - Chr6:196247-196266 MsG0680030293.01.T01:intron 30.0%
AGAAAGTGAAAGATAAGGTA+AGG - Chr6:195157-195176 MsG0680030293.01.T01:intron 30.0%
AGAACTAGTGTGTGTAAATT+CGG + Chr6:194979-194998 None:intergenic 30.0%
AGAAGATGGTAATATTTAGC+AGG - Chr6:200540-200559 MsG0680030293.01.T01:five_prime_UTR 30.0%
ATCAAAGCTGAGTAAAACAA+GGG + Chr6:195369-195388 None:intergenic 30.0%
ATCAGTTAAGTTCAAGGATA+AGG - Chr6:198973-198992 MsG0680030293.01.T01:CDS 30.0%
ATTTGAGCTTATCTACTTAC+TGG + Chr6:194114-194133 None:intergenic 30.0%
CAAATCATACCTCCAATATT+AGG + Chr6:194859-194878 None:intergenic 30.0%
CAATTTGACAATCTCATTGT+CGG + Chr6:194767-194786 None:intergenic 30.0%
CACCATAAGCAATTTGTAAA+CGG - Chr6:196134-196153 MsG0680030293.01.T01:CDS 30.0%
CACTGTAATTAAGAAGTTGA+AGG + Chr6:193562-193581 None:intergenic 30.0%
CATAATATATACAAGGTCTG+GGG - Chr6:199458-199477 MsG0680030293.01.T01:intron 30.0%
CATTATAGGTTATCTAACTG+AGG - Chr6:198283-198302 MsG0680030293.01.T01:CDS 30.0%
CATTATTACTACAACCCAAA+TGG + Chr6:194202-194221 None:intergenic 30.0%
CGAGTCAAAAAGTAAACTTA+GGG - Chr6:197473-197492 MsG0680030293.01.T01:intron 30.0%
CTCAGTTAGATAACCTATAA+TGG + Chr6:198285-198304 None:intergenic 30.0%
CTGATGATATGTCATCTAAT+CGG - Chr6:197822-197841 MsG0680030293.01.T01:intron 30.0%
CTTCAAGAAAGTGAAAGATA+AGG - Chr6:195152-195171 MsG0680030293.01.T01:intron 30.0%
GAAAAGATAAATATGGGTAG+TGG + Chr6:195192-195211 None:intergenic 30.0%
GAAAATGCAAATCAGATCTT+GGG - Chr6:195505-195524 MsG0680030293.01.T01:intron 30.0%
GAAGATGGTAATATTTAGCA+GGG - Chr6:200541-200560 MsG0680030293.01.T01:five_prime_UTR 30.0%
GAGTCAAAAAGTAAACTTAG+GGG - Chr6:197474-197493 MsG0680030293.01.T01:intron 30.0%
GCAACAAAAAGTAAACTTAG+GGG + Chr6:197393-197412 None:intergenic 30.0%
GCATAATATATACAAGGTCT+GGG - Chr6:199457-199476 MsG0680030293.01.T01:intron 30.0%
GGAAAATTACAAAGTAGAGA+AGG + Chr6:194305-194324 None:intergenic 30.0%
GTTAGCTATAGCTTTCATAT+TGG + Chr6:196935-196954 None:intergenic 30.0%
GTTATGCATGAGTAAAACAA+AGG + Chr6:197644-197663 None:intergenic 30.0%
GTTCATTCTAAATTGAACAC+AGG + Chr6:195882-195901 None:intergenic 30.0%
TACTACTAGAATGATGACTT+TGG + Chr6:194353-194372 None:intergenic 30.0%
TAGACAACAGTTAGAATAGA+AGG + Chr6:198778-198797 None:intergenic 30.0%
TATCAAAGCTGAGTAAAACA+AGG + Chr6:195370-195389 None:intergenic 30.0%
TATCCATTGCATTTACAGAA+AGG + Chr6:196465-196484 None:intergenic 30.0%
TATCGTACACTAAAAATTCC+TGG + Chr6:198669-198688 None:intergenic 30.0%
TATGGCTTACTATAATAGGA+AGG + Chr6:196978-196997 None:intergenic 30.0%
TATTGTTGTCAAGAAGACTA+AGG + Chr6:195068-195087 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG - Chr6:194128-194147 MsG0680030293.01.T01:intron 30.0%
TCGAGTCAAAAAGTAAACTT+AGG - Chr6:197472-197491 MsG0680030293.01.T01:intron 30.0%
TGAAAATGCAAATCAGATCT+TGG - Chr6:195504-195523 MsG0680030293.01.T01:intron 30.0%
TGATGATATGTCATCTAATC+GGG - Chr6:197823-197842 MsG0680030293.01.T01:intron 30.0%
TGCAACAGAAAGTAAACTTA+GGG - Chr6:197540-197559 MsG0680030293.01.T01:intron 30.0%
TGCATAATATATACAAGGTC+TGG - Chr6:199456-199475 MsG0680030293.01.T01:intron 30.0%
TGTCAATGAAAAACAAGATG+TGG - Chr6:197925-197944 MsG0680030293.01.T01:intron 30.0%
TGTGTATCTTTAGATTCATC+AGG + Chr6:197953-197972 None:intergenic 30.0%
TTACCAAATCTTAACCGATT+GGG - Chr6:194793-194812 MsG0680030293.01.T01:intron 30.0%
TTACTATAATAGGAAGGTTC+CGG + Chr6:196972-196991 None:intergenic 30.0%
TTGCAACAGAAAGTAAACTT+AGG - Chr6:197539-197558 MsG0680030293.01.T01:intron 30.0%
! AGCTTTCATATTGGTTAGAT+TGG + Chr6:196926-196945 None:intergenic 30.0%
! AGTAATATTTCTACGATTCG+TGG - Chr6:200325-200344 MsG0680030293.01.T01:intron 30.0%
! ATCACAACTTTGGAAAACTT+AGG - Chr6:197598-197617 MsG0680030293.01.T01:intron 30.0%
! ATCACAACTTTGGAAAACTT+AGG + Chr6:197617-197598 None:intergenic 30.0%
! CAAAGGCTTAATTACACTTT+TGG + Chr6:197627-197646 None:intergenic 30.0%
! GAATTTGAGTTCCTTTGTAA+TGG - Chr6:194705-194724 MsG0680030293.01.T01:intron 30.0%
! GTTTTCCAAAGTTGTGATTT+TGG - Chr6:197340-197359 MsG0680030293.01.T01:intron 30.0%
! GTTTTCCAAAGTTGTGATTT+TGG + Chr6:197359-197340 None:intergenic 30.0%
! TCAAAAAAGAAGTGTGATGA+AGG + Chr6:198137-198156 None:intergenic 30.0%
! TCACAACTTTGGAAAACTTA+GGG - Chr6:197599-197618 MsG0680030293.01.T01:intron 30.0%
! TCACAACTTTGGAAAACTTA+GGG + Chr6:197618-197599 None:intergenic 30.0%
!! AATAATTGTAGAGTTTGCTG+TGG - Chr6:198874-198893 MsG0680030293.01.T01:CDS 30.0%
!! ACTTTTTGACTCGAAATTAG+GGG + Chr6:197466-197485 None:intergenic 30.0%
!! CATTTGGGTTGTAGTAATAA+TGG - Chr6:194200-194219 MsG0680030293.01.T01:intron 30.0%
!! TAATACTGATTCTACTGCAA+TGG - Chr6:197982-198001 MsG0680030293.01.T01:intron 30.0%
!! TAGTCACTAGTGTTGTTTAA+TGG - Chr6:196062-196081 MsG0680030293.01.T01:CDS 30.0%
!!! AGCATTTTAAAACGTACCAT+TGG - Chr6:195260-195279 MsG0680030293.01.T01:intron 30.0%
!!! ATGAATCATTAGGGCTTTTT+TGG - Chr6:198636-198655 MsG0680030293.01.T01:intron 30.0%
!!! GGAAAGAGTTGTTTTTTTAG+AGG + Chr6:197367-197386 None:intergenic 30.0%
!!! TTTCATGTGGGGTTATTTTT+AGG - Chr6:193678-193697 MsG0680030293.01.T01:CDS 30.0%
AAAAAGTAAACTTAGGGGCT+TGG + Chr6:197388-197407 None:intergenic 35.0%
AAAATAATGGTTGGGTGTGT+TGG + Chr6:198179-198198 None:intergenic 35.0%
AAATAATGGTTGGGTGTGTT+GGG + Chr6:198178-198197 None:intergenic 35.0%
AAGAGTCTGTGAACTAACAA+TGG + Chr6:197205-197224 None:intergenic 35.0%
AAGTTCATCTAACTCGTTGA+AGG - Chr6:198914-198933 MsG0680030293.01.T01:CDS 35.0%
AATATCAGTGTCCGAACAAA+AGG - Chr6:196306-196325 MsG0680030293.01.T01:intron 35.0%
ACACTAAAAATTCCTGGCTA+GGG + Chr6:198663-198682 None:intergenic 35.0%
ACTAAGGAATCACCTTATTC+TGG - Chr6:197068-197087 MsG0680030293.01.T01:intron 35.0%
ACTTAGGGGAAAGTAAACTT+AGG - Chr6:197488-197507 MsG0680030293.01.T01:intron 35.0%
AGCCGTAAAGTATAATTGCT+GGG + Chr6:194243-194262 None:intergenic 35.0%
ATCAAGCTGTTTATCCAAAC+AGG + Chr6:193911-193930 None:intergenic 35.0%
ATGGAAAATGTACCAACTCA+TGG + Chr6:200125-200144 None:intergenic 35.0%
CAACAGAAAGTAAACTTAGG+GGG - Chr6:197542-197561 MsG0680030293.01.T01:intron 35.0%
CAACTATAAAACACATCGCA+AGG - Chr6:196518-196537 MsG0680030293.01.T01:intron 35.0%
CACTACTCATTAACAACAAC+AGG - Chr6:194818-194837 MsG0680030293.01.T01:intron 35.0%
CAGCACATATACGATGATAT+AGG - Chr6:196020-196039 MsG0680030293.01.T01:CDS 35.0%
CATAAGCAATTTGTAAACGG+AGG - Chr6:196137-196156 MsG0680030293.01.T01:intron 35.0%
CATAGTCATGCTAAATGATC+GGG - Chr6:200481-200500 MsG0680030293.01.T01:five_prime_UTR 35.0%
CATATAAAGAGATGCAGACT+TGG - Chr6:198751-198770 MsG0680030293.01.T01:intron 35.0%
CCATAGTCATGCTAAATGAT+CGG - Chr6:200480-200499 MsG0680030293.01.T01:five_prime_UTR 35.0%
CGACAATGAGATTGTCAAAT+TGG - Chr6:194765-194784 MsG0680030293.01.T01:intron 35.0%
CGTTTACAAATTGCTTATGG+TGG + Chr6:196136-196155 None:intergenic 35.0%
CTAACTCGTTGATCAACTTA+AGG - Chr6:198943-198962 MsG0680030293.01.T01:CDS 35.0%
CTCCGTTTACAAATTGCTTA+TGG + Chr6:196139-196158 None:intergenic 35.0%
CTTAAATTCATCGCACTGAA+GGG - Chr6:193609-193628 MsG0680030293.01.T01:CDS 35.0%
CTTACCAAATCTTAACCGAT+TGG - Chr6:194792-194811 MsG0680030293.01.T01:intron 35.0%
CTTAGGGGAAAGTAAACTTA+GGG - Chr6:197489-197508 MsG0680030293.01.T01:intron 35.0%
CTTTCTTGAAGTCCAAAACT+CGG + Chr6:195143-195162 None:intergenic 35.0%
CTTTCTTGGGTTATGTTAAC+CGG + Chr6:199343-199362 None:intergenic 35.0%
GAAGAAACATGTAAAACCAC+AGG + Chr6:197169-197188 None:intergenic 35.0%
GATAATATTGCATACCTCTG+TGG + Chr6:194522-194541 None:intergenic 35.0%
GCAACAGAAAGTAAACTTAG+GGG - Chr6:197541-197560 MsG0680030293.01.T01:intron 35.0%
GCAATACAAACACCATAGTA+AGG + Chr6:194946-194965 None:intergenic 35.0%
GGGTTCTTGAATCAAAGTAT+TGG - Chr6:198483-198502 MsG0680030293.01.T01:intron 35.0%
GGTTTGACACAAATGAGATA+TGG + Chr6:196281-196300 None:intergenic 35.0%
GTTCAAGGATAAGGACAAAT+AGG - Chr6:198982-199001 MsG0680030293.01.T01:CDS 35.0%
GTTCCTTTCTGTAAATGCAA+TGG - Chr6:196459-196478 MsG0680030293.01.T01:intron 35.0%
TAAATTGAACACAGGGTCTA+TGG + Chr6:195874-195893 None:intergenic 35.0%
TAATCGGGTTTGATGTTAAC+AGG - Chr6:197838-197857 MsG0680030293.01.T01:intron 35.0%
TAATGAGTAGTGTACCCAAT+CGG + Chr6:194810-194829 None:intergenic 35.0%
TAATTATCTGCATTTGAGGG+TGG - Chr6:196615-196634 MsG0680030293.01.T01:intron 35.0%
TACAAATTGCTTATGGTGGT+TGG + Chr6:196132-196151 None:intergenic 35.0%
TACACTAAAAATTCCTGGCT+AGG + Chr6:198664-198683 None:intergenic 35.0%
TACATATCATGGAGGAATGA+TGG + Chr6:198073-198092 None:intergenic 35.0%
TAGCTTAAAAGTTGTAGACG+AGG - Chr6:195943-195962 MsG0680030293.01.T01:intron 35.0%
TAGTACGTGGATCTTTGATT+TGG + Chr6:199085-199104 None:intergenic 35.0%
TATTGATCTGAGAAAGTCAG+TGG - Chr6:196829-196848 MsG0680030293.01.T01:intron 35.0%
TCATCGTATATGTGCTGTAT+TGG + Chr6:196017-196036 None:intergenic 35.0%
TCTTAAATTCATCGCACTGA+AGG - Chr6:193608-193627 MsG0680030293.01.T01:CDS 35.0%
TGACCTCTTACTAGACTAAT+GGG - Chr6:197702-197721 MsG0680030293.01.T01:intron 35.0%
TGTCAAAGATTCTCCAATCT+TGG - Chr6:200432-200451 MsG0680030293.01.T01:intron 35.0%
TGTGTAACTCTACCTTACTA+TGG - Chr6:194931-194950 MsG0680030293.01.T01:intron 35.0%
TGTTGATCTTTGATCATGTG+TGG + Chr6:200259-200278 None:intergenic 35.0%
TTAGGGGAAAGTAAACTTAG+GGG - Chr6:197490-197509 MsG0680030293.01.T01:intron 35.0%
TTCGGACACTGATATTTGAT+AGG + Chr6:196302-196321 None:intergenic 35.0%
TTGACCTCTTACTAGACTAA+TGG - Chr6:197701-197720 MsG0680030293.01.T01:intron 35.0%
! ACAACTTTGGAAAACTTAGG+GGG - Chr6:197601-197620 MsG0680030293.01.T01:intron 35.0%
! ACAACTTTGGAAAACTTAGG+GGG + Chr6:197620-197601 None:intergenic 35.0%
! AGTACGTGGATCTTTGATTT+GGG + Chr6:199084-199103 None:intergenic 35.0%
! ATGCTGAAGTTATGGGTTAA+AGG + Chr6:195990-196009 None:intergenic 35.0%
! ATTTGAAACCCTAAACAAGC+TGG - Chr6:194267-194286 MsG0680030293.01.T01:intron 35.0%
! CACAACTTTGGAAAACTTAG+GGG - Chr6:197600-197619 MsG0680030293.01.T01:intron 35.0%
! CACAACTTTGGAAAACTTAG+GGG + Chr6:197619-197600 None:intergenic 35.0%
! GTACTTCTCTGTTTCTTAGA+TGG - Chr6:198522-198541 MsG0680030293.01.T01:intron 35.0%
! TGTGATGAAGGCACAATTAT+AGG + Chr6:198125-198144 None:intergenic 35.0%
! TTGTGCGTACACTTTTATGT+CGG - Chr6:198462-198481 MsG0680030293.01.T01:intron 35.0%
!! AGTAATAATGGGTTGTAGAC+TGG - Chr6:194212-194231 MsG0680030293.01.T01:intron 35.0%
!! CTTTTTGACTCGAAATTAGG+GGG + Chr6:197465-197484 None:intergenic 35.0%
!! TCACTAGTGTTGTTTAATGG+AGG - Chr6:196065-196084 MsG0680030293.01.T01:CDS 35.0%
!! TGGCAGATTTTTGTGTTGTT+AGG + Chr6:200239-200258 None:intergenic 35.0%
!! TGTTCCATTTTAACCTCGTA+GGG - Chr6:194379-194398 MsG0680030293.01.T01:intron 35.0%
!!! AGAATTTTTTTGGTGGTGAC+CGG + Chr6:199492-199511 None:intergenic 35.0%
!!! GTGGGGTTATTTTTAGGTTT+TGG - Chr6:193684-193703 MsG0680030293.01.T01:CDS 35.0%
!!! TGCAATGCTTTTTTGAGTGT+TGG - Chr6:193806-193825 MsG0680030293.01.T01:intron 35.0%
!!! TTTTAAGATCTGCAGGAAGT+TGG + Chr6:197877-197896 None:intergenic 35.0%
AAGAAAAGTGAGGAGAAGAG+AGG + Chr6:193471-193490 None:intergenic 40.0%
AAGCTATAGCTAACAGCAGT+AGG - Chr6:196941-196960 MsG0680030293.01.T01:intron 40.0%
AAGGCAAAATGGAAACACCA+TGG + Chr6:196091-196110 None:intergenic 40.0%
AATTAAGGACATACACCCTC+CGG - Chr6:199525-199544 MsG0680030293.01.T01:CDS 40.0%
ACAACAGCTAGAAGCAAGAT+GGG + Chr6:194900-194919 None:intergenic 40.0%
ACACATCAAGACTAACTGGA+CGG + Chr6:196441-196460 None:intergenic 40.0%
ACGTAAAACCAGAGCACATA+GGG + Chr6:194154-194173 None:intergenic 40.0%
ACTACCAGTGTTATCAATGG+TGG + Chr6:196197-196216 None:intergenic 40.0%
ACTATTTGTGAGTTACCCTG+TGG - Chr6:197150-197169 MsG0680030293.01.T01:intron 40.0%
AGAAAAGCTTGAGCAACACA+AGG + Chr6:198029-198048 None:intergenic 40.0%
AGAAAAGTGAGGAGAAGAGA+GGG + Chr6:193470-193489 None:intergenic 40.0%
AGACTTTCAAAGGCCAAGAT+TGG + Chr6:200448-200467 None:intergenic 40.0%
AGATGTCGCTAGACTTGAAA+AGG - Chr6:197227-197246 MsG0680030293.01.T01:intron 40.0%
AGCTATAGCTAACAGCAGTA+GGG - Chr6:196942-196961 MsG0680030293.01.T01:intron 40.0%
AGGAACACATCAAGACTAAC+TGG + Chr6:196445-196464 None:intergenic 40.0%
AGTTATATGCACGCAAGATC+TGG + Chr6:195416-195435 None:intergenic 40.0%
ATCCTACCTATTCTCATCCT+TGG - Chr6:198242-198261 MsG0680030293.01.T01:CDS 40.0%
ATCTCCCTACGAGGTTAAAA+TGG + Chr6:194386-194405 None:intergenic 40.0%
CAATCAAAAGGACCATGAGT+TGG - Chr6:200110-200129 MsG0680030293.01.T01:intron 40.0%
CACTAAAAATTCCTGGCTAG+GGG + Chr6:198662-198681 None:intergenic 40.0%
CATTGCTCTCATGTATCATG+CGG - Chr6:193757-193776 MsG0680030293.01.T01:intron 40.0%
CCAAAGCAACATAGTGAAAC+AGG - Chr6:199057-199076 MsG0680030293.01.T01:intron 40.0%
CCGATCATTTAGCATGACTA+TGG + Chr6:200483-200502 None:intergenic 40.0%
CCGCGTAAAACAAAGACTAA+GGG + Chr6:195464-195483 None:intergenic 40.0%
CCTGTCTAACAACAAGAAGA+TGG - Chr6:200526-200545 MsG0680030293.01.T01:five_prime_UTR 40.0%
CTAGTGTGTGTAAATTCGGT+AGG + Chr6:194975-194994 None:intergenic 40.0%
CTGCAAGGAATCCATTACAA+AGG + Chr6:194719-194738 None:intergenic 40.0%
CTGCATATAATCGTAGACGA+TGG - Chr6:195317-195336 MsG0680030293.01.T01:intron 40.0%
GAATCGGTGAAAGAAAAGTG+AGG + Chr6:193481-193500 None:intergenic 40.0%
GAATTAATCAAATGGGCCAG+TGG + Chr6:196710-196729 None:intergenic 40.0%
GAGCCGTAAAGTATAATTGC+TGG + Chr6:194244-194263 None:intergenic 40.0%
GAGGGAATGAGATCCATTAT+AGG - Chr6:198269-198288 MsG0680030293.01.T01:CDS 40.0%
GCAGTAAAATATCCACAACC+TGG + Chr6:195301-195320 None:intergenic 40.0%
GGCCCAGCAATTATACTTTA+CGG - Chr6:194238-194257 MsG0680030293.01.T01:intron 40.0%
GTAAAGTATAATTGCTGGGC+CGG + Chr6:194239-194258 None:intergenic 40.0%
GTACCCAATCGGTTAAGATT+TGG + Chr6:194799-194818 None:intergenic 40.0%
GTGACTACCAGTGTTATCAA+TGG + Chr6:196200-196219 None:intergenic 40.0%
GTGCATATAACTGTAGACGA+CGG - Chr6:195424-195443 MsG0680030293.01.T01:intron 40.0%
TAAAGTATAATTGCTGGGCC+GGG + Chr6:194238-194257 None:intergenic 40.0%
TAACACTGGTAGTCACCTTA+AGG - Chr6:196204-196223 MsG0680030293.01.T01:intron 40.0%
TACAACAGCTAGAAGCAAGA+TGG + Chr6:194901-194920 None:intergenic 40.0%
TACTCATATTTGTGACCGGA+GGG + Chr6:199543-199562 None:intergenic 40.0%
TAGCATGACTATGGCTAGAT+CGG + Chr6:200474-200493 None:intergenic 40.0%
TAGGGGAAAGTAAACTTAGG+GGG - Chr6:197491-197510 MsG0680030293.01.T01:intron 40.0%
TCCAGATGTTTCAGAAGCTA+CGG - Chr6:195774-195793 MsG0680030293.01.T01:intron 40.0%
TCTTCATCTGTACTTCCTGT+AGG - Chr6:195672-195691 MsG0680030293.01.T01:intron 40.0%
TGATTCTACTGCAATGGAAC+AGG - Chr6:197988-198007 MsG0680030293.01.T01:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG - Chr6:199636-199655 MsG0680030293.01.T01:intron 40.0%
TGGACACATGCTGAAGTTAT+GGG + Chr6:195997-196016 None:intergenic 40.0%
TTACTCATATTTGTGACCGG+AGG + Chr6:199544-199563 None:intergenic 40.0%
TTGACATGCTTATGCTCTCT+AGG + Chr6:200418-200437 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG - Chr6:199635-199654 MsG0680030293.01.T01:intron 40.0%
TTGGACACATGCTGAAGTTA+TGG + Chr6:195998-196017 None:intergenic 40.0%
! AATGAGGACTTTTCCAGATC+AGG + Chr6:194427-194446 None:intergenic 40.0%
! ACTGAACTATTGCTGCTTAG+AGG - Chr6:197113-197132 MsG0680030293.01.T01:intron 40.0%
! CACTAGTTCTCACAAACAAC+AGG - Chr6:194989-195008 MsG0680030293.01.T01:intron 40.0%
! CCTGTTTCACTATGTTGCTT+TGG + Chr6:199060-199079 None:intergenic 40.0%
! CTGAACTATTGCTGCTTAGA+GGG - Chr6:197114-197133 MsG0680030293.01.T01:intron 40.0%
! GAAACATCTGGAGTTTCAAC+AGG + Chr6:195766-195785 None:intergenic 40.0%
! GTTTCCATTTTGCCTTAGCA+TGG - Chr6:196095-196114 MsG0680030293.01.T01:CDS 40.0%
! TAATGGATCTCATTCCCTCA+AGG + Chr6:198268-198287 None:intergenic 40.0%
! TACAGGAAGTACAGATGAAG+AGG + Chr6:195673-195692 None:intergenic 40.0%
! TCTCCCATTAGTCTAGTAAG+AGG + Chr6:197708-197727 None:intergenic 40.0%
! TGAACTATTGCTGCTTAGAG+GGG - Chr6:197115-197134 MsG0680030293.01.T01:intron 40.0%
! TGTGCGTACACTTTTATGTC+GGG - Chr6:198463-198482 MsG0680030293.01.T01:intron 40.0%
! TGTTGCTCAAGCTTTTCTTG+TGG - Chr6:198031-198050 MsG0680030293.01.T01:intron 40.0%
!! AACGTACCATTGGCTCTTAA+TGG - Chr6:195270-195289 MsG0680030293.01.T01:intron 40.0%
!! ATAATTTGCTCTGGAGTAGG+AGG + Chr6:195826-195845 None:intergenic 40.0%
!! ATTTTAACCTCGTAGGGAGA+TGG - Chr6:194385-194404 MsG0680030293.01.T01:intron 40.0%
!! CACGTGTTTGCTATGAAGTA+TGG + Chr6:199112-199131 None:intergenic 40.0%
!! CCATCTTCTTGTTGTTAGAC+AGG + Chr6:200529-200548 None:intergenic 40.0%
!! CTGTTCCATTTTAACCTCGT+AGG - Chr6:194378-194397 MsG0680030293.01.T01:intron 40.0%
!! CTTTGTAATGGATTCCTTGC+AGG - Chr6:194717-194736 MsG0680030293.01.T01:intron 40.0%
!! GCAATAATTTGCTCTGGAGT+AGG + Chr6:195829-195848 None:intergenic 40.0%
!!! AATTTTTTTGGTGGTGACCG+GGG + Chr6:199490-199509 None:intergenic 40.0%
!!! ACTTTTCTTTCACCGATTCG+TGG - Chr6:193482-193501 MsG0680030293.01.T01:CDS 40.0%
!!! CCCTTAGTCTTTGTTTTACG+CGG - Chr6:195461-195480 MsG0680030293.01.T01:intron 40.0%
!!! GAATTTTTTTGGTGGTGACC+GGG + Chr6:199491-199510 None:intergenic 40.0%
!!! GTCAAGCTTTTAAGATCTGC+AGG + Chr6:197884-197903 None:intergenic 40.0%
AATTCATCGCACTGAAGGGT+TGG - Chr6:193613-193632 MsG0680030293.01.T01:CDS 45.0%
AGACTAAGGAACTGCAGCTT+TGG + Chr6:195054-195073 None:intergenic 45.0%
AGATCGGTGGAGACTTTCAA+AGG + Chr6:200458-200477 None:intergenic 45.0%
AGATGTTTCAGAAGCTACGG+AGG - Chr6:195777-195796 MsG0680030293.01.T01:intron 45.0%
AGGTAGAGTTACACAGCTTG+TGG + Chr6:194926-194945 None:intergenic 45.0%
ATCCAACTCGCGCTCTTTAA+TGG + Chr6:194459-194478 None:intergenic 45.0%
CAACAGCTAGAAGCAAGATG+GGG + Chr6:194899-194918 None:intergenic 45.0%
CATCTAACTCGTTGAAGGTC+TGG - Chr6:198919-198938 MsG0680030293.01.T01:CDS 45.0%
CATGCTAAATGATCGGGCAT+TGG - Chr6:200487-200506 MsG0680030293.01.T01:five_prime_UTR 45.0%
CTTGAAGTCCAAAACTCGGA+GGG + Chr6:195139-195158 None:intergenic 45.0%
GAAAGTAAACTTAGGGGGCT+TGG - Chr6:197496-197515 MsG0680030293.01.T01:intron 45.0%
GAAGTATGGACTCTAGTACG+TGG + Chr6:199098-199117 None:intergenic 45.0%
GACGTAAAACCAGAGCACAT+AGG + Chr6:194155-194174 None:intergenic 45.0%
GAGAAAATTCCGCCATGCTA+AGG + Chr6:196110-196129 None:intergenic 45.0%
GAGGGCCAAAATCACAACTT+TGG + Chr6:197348-197367 None:intergenic 45.0%
GCATTGGATGAGAAATCGCT+TGG - Chr6:200503-200522 MsG0680030293.01.T01:five_prime_UTR 45.0%
GCCGCGTAAAACAAAGACTA+AGG + Chr6:195465-195484 None:intergenic 45.0%
GTCTTGCCATTAAGAGCCAA+TGG + Chr6:195279-195298 None:intergenic 45.0%
TACATGTTTCTTCTGCGTGC+AGG - Chr6:197176-197195 MsG0680030293.01.T01:intron 45.0%
TCAAGGCCAAGGATGAGAAT+AGG + Chr6:198251-198270 None:intergenic 45.0%
TCGCTTCTAAACGTTCCTAC+AGG + Chr6:195690-195709 None:intergenic 45.0%
TCTTGAAGTCCAAAACTCGG+AGG + Chr6:195140-195159 None:intergenic 45.0%
TGAGCACGAAGATTAAGCTC+AGG + Chr6:194326-194345 None:intergenic 45.0%
TGCTTCATTATGGGCCTGTT+TGG - Chr6:193894-193913 MsG0680030293.01.T01:intron 45.0%
TGTGTCAAATTGGTCCTGCA+AGG + Chr6:194734-194753 None:intergenic 45.0%
TTAATGGCAAGACCAGGTTG+TGG - Chr6:195286-195305 MsG0680030293.01.T01:intron 45.0%
! ACAAGCAGCCAGCTTGTTTA+GGG + Chr6:194278-194297 None:intergenic 45.0%
! CCAGTGTTATCAATGGTGGA+TGG + Chr6:196193-196212 None:intergenic 45.0%
! CCATCCACCATTGATAACAC+TGG - Chr6:196190-196209 MsG0680030293.01.T01:intron 45.0%
! CGAAAATTTAGGTGCCACAG+AGG - Chr6:194505-194524 MsG0680030293.01.T01:intron 45.0%
! CTTTTTGCAGGACTAGAGTG+AGG - Chr6:198435-198454 MsG0680030293.01.T01:intron 45.0%
! GAACTATTGCTGCTTAGAGG+GGG - Chr6:197116-197135 MsG0680030293.01.T01:intron 45.0%
! TACAAGCAGCCAGCTTGTTT+AGG + Chr6:194279-194298 None:intergenic 45.0%
! TACCATTAAAGAGCGCGAGT+TGG - Chr6:194454-194473 MsG0680030293.01.T01:intron 45.0%
! TCCATTTTGCCTTAGCATGG+CGG - Chr6:196098-196117 MsG0680030293.01.T01:CDS 45.0%
! TGAGCTTGACTCAGTTGGTA+GGG - Chr6:199429-199448 MsG0680030293.01.T01:intron 45.0%
! TTCAGGCCAAGCCTTTTGTT+CGG + Chr6:196320-196339 None:intergenic 45.0%
!! AAGGAACTGCAGCTTTGGAA+GGG + Chr6:195049-195068 None:intergenic 45.0%
!! AGAAGTACTCACAGACACGA+CGG + Chr6:193533-193552 None:intergenic 45.0%
!! AGCTTTGGAAGGGATGTCAA+AGG + Chr6:195039-195058 None:intergenic 45.0%
!! ATTCTCATCCTTGGCCTTGA+GGG - Chr6:198251-198270 MsG0680030293.01.T01:CDS 45.0%
!! GTGTTATCAATGGTGGATGG+TGG + Chr6:196190-196209 None:intergenic 45.0%
!! GTGTTGTTTAATGGAGGCCA+TGG - Chr6:196071-196090 MsG0680030293.01.T01:CDS 45.0%
!! GTTGCAATTTTAGCCCCTCA+TGG - Chr6:197408-197427 MsG0680030293.01.T01:intron 45.0%
!! GTTGCAATTTTAGCCCCTCA+TGG + Chr6:197427-197408 None:intergenic 45.0%
!! TAAGGAACTGCAGCTTTGGA+AGG + Chr6:195050-195069 None:intergenic 45.0%
!! TATTCTCATCCTTGGCCTTG+AGG - Chr6:198250-198269 MsG0680030293.01.T01:CDS 45.0%
!! TCCGTAGCTTCTGAAACATC+TGG + Chr6:195778-195797 None:intergenic 45.0%
!! TGTTAACAGGCACTGAAGTC+TGG - Chr6:197851-197870 MsG0680030293.01.T01:intron 45.0%
!! AAAAATATATATATTTGTAT+GGG - Chr6:193857-193876 MsG0680030293.01.T01:intron 5.0%
!!! TAACTATTTTTTTTTTTTTA+AGG - Chr6:194557-194576 MsG0680030293.01.T01:intron 5.0%
AGCAGCAGCTATTCTCCAAG+AGG + Chr6:198573-198592 None:intergenic 50.0%
AGGGGGCTAAAATTGCCATG+AGG - Chr6:197508-197527 MsG0680030293.01.T01:intron 50.0%
AGGGGGCTAAAATTGCCATG+AGG + Chr6:197527-197508 None:intergenic 50.0%
ATCTCATTCCCTCAAGGCCA+AGG + Chr6:198262-198281 None:intergenic 50.0%
CACCTTAAGGTGCAACAGCA+AGG - Chr6:196217-196236 MsG0680030293.01.T01:intron 50.0%
CAGCAGCTATTCTCCAAGAG+GGG + Chr6:198571-198590 None:intergenic 50.0%
CAGTGTCCGAACAAAAGGCT+TGG - Chr6:196311-196330 MsG0680030293.01.T01:intron 50.0%
CATGACTATGGCTAGATCGG+TGG + Chr6:200471-200490 None:intergenic 50.0%
CCAACTGAGTCAAGCTCACA+AGG + Chr6:199427-199446 None:intergenic 50.0%
CCTTGTGAGCTTGACTCAGT+TGG - Chr6:199424-199443 MsG0680030293.01.T01:intron 50.0%
GCAGCAGCTATTCTCCAAGA+GGG + Chr6:198572-198591 None:intergenic 50.0%
GGCCAAGGATGAGAATAGGT+AGG + Chr6:198247-198266 None:intergenic 50.0%
GGGGCTAAAATTGCCATGAG+GGG - Chr6:197510-197529 MsG0680030293.01.T01:intron 50.0%
GGGGCTAAAATTGCCATGAG+GGG + Chr6:197529-197510 None:intergenic 50.0%
GGGGGCCAAAATCACAACTT+TGG - Chr6:197588-197607 MsG0680030293.01.T01:intron 50.0%
GGGGGCTAAAATTGCCATGA+GGG - Chr6:197509-197528 MsG0680030293.01.T01:intron 50.0%
GGGGGCTAAAATTGCCATGA+GGG + Chr6:197528-197509 None:intergenic 50.0%
GTGAGCTTGACTCAGTTGGT+AGG - Chr6:199428-199447 MsG0680030293.01.T01:intron 50.0%
TAATGGTTGGGTGTGTTGGG+CGG + Chr6:198175-198194 None:intergenic 50.0%
TCCGCCATGCTAAGGCAAAA+TGG + Chr6:196102-196121 None:intergenic 50.0%
TGGAGTAGGAGGAGTCACTT+TGG + Chr6:195815-195834 None:intergenic 50.0%
TGGCTCTTAATGGCAAGACC+AGG - Chr6:195280-195299 MsG0680030293.01.T01:intron 50.0%
! GCTGAAATCCCTCCGAGTTT+TGG - Chr6:195128-195147 MsG0680030293.01.T01:intron 50.0%
! GGAGTAGGAGGAGTCACTTT+GGG + Chr6:195814-195833 None:intergenic 50.0%
!! CTCCTTGCTGTTGCACCTTA+AGG + Chr6:196222-196241 None:intergenic 50.0%
!! TAATGGGTTGTAGACTGGCC+CGG - Chr6:194217-194236 MsG0680030293.01.T01:intron 50.0%
!! TTCACCGATTCGTGGTGTTC+CGG - Chr6:193490-193509 MsG0680030293.01.T01:CDS 50.0%
AACATGCCATTGCACCGCCA+TGG + Chr6:196167-196186 None:intergenic 55.0%
AGTACTCACAGACACGACGG+AGG + Chr6:193530-193549 None:intergenic 55.0%
AGTCTCACCATCTCCCTACG+AGG + Chr6:194395-194414 None:intergenic 55.0%
CAAACAGGCCCTATGTGCTC+TGG - Chr6:194143-194162 MsG0680030293.01.T01:intron 55.0%
CAGAGCACATAGGGCCTGTT+TGG + Chr6:194145-194164 None:intergenic 55.0%
CCCTTGCTCTATACACCCTC+CGG + Chr6:199654-199673 None:intergenic 55.0%
CTAACAGCAGTAGGGCGTAC+CGG - Chr6:196950-196969 MsG0680030293.01.T01:intron 55.0%
CTCGGAGGGATTTCAGCTTG+TGG + Chr6:195125-195144 None:intergenic 55.0%
GACTCACTGCTGACCTGATC+TGG - Chr6:194411-194430 MsG0680030293.01.T01:intron 55.0%
GGAGGAACGGAAAGAGTGAC+CGG + Chr6:193512-193531 None:intergenic 55.0%
GGGGGTTTCAATTCCCCTCT+TGG - Chr6:198555-198574 MsG0680030293.01.T01:intron 55.0%
GGGTATGCTTTCTGCTCCAC+TGG - Chr6:196691-196710 MsG0680030293.01.T01:intron 55.0%
GTGACCGGAACACCACGAAT+CGG + Chr6:193497-193516 None:intergenic 55.0%
GTTATGTTAACCGGTGCCCC+CGG + Chr6:199334-199353 None:intergenic 55.0%
TCACAGACACGACGGAGGAA+CGG + Chr6:193525-193544 None:intergenic 55.0%
TGACTCGAAATTAGGGGGCC+TGG + Chr6:197460-197479 None:intergenic 55.0%
TTATGTTAACCGGTGCCCCC+GGG + Chr6:199333-199352 None:intergenic 55.0%
TTGTAAACGGAGGCCTGCCA+TGG - Chr6:196147-196166 MsG0680030293.01.T01:intron 55.0%
! AAGGTCTGGGGTTCAAACCC+CGG - Chr6:199470-199489 MsG0680030293.01.T01:intron 55.0%
! ACCGGAGGGTGTATAGAGCA+AGG - Chr6:199650-199669 MsG0680030293.01.T01:intron 55.0%
! CCGGAGGGTGTATAGAGCAA+GGG - Chr6:199651-199670 MsG0680030293.01.T01:intron 55.0%
! TCTGGAGTTTCAACAGGCGC+TGG + Chr6:195760-195779 None:intergenic 55.0%
CTTCCTTAACCAGTGCCCCG+GGG - Chr6:199314-199333 MsG0680030293.01.T01:intron 60.0%
GCTTCCTTAACCAGTGCCCC+GGG - Chr6:199313-199332 MsG0680030293.01.T01:intron 60.0%
GGCTTCCTTAACCAGTGCCC+CGG - Chr6:199312-199331 MsG0680030293.01.T01:intron 60.0%
TAAACGGAGGCCTGCCATGG+CGG - Chr6:196150-196169 MsG0680030293.01.T01:intron 60.0%
TATGTTAACCGGTGCCCCCG+GGG + Chr6:199332-199351 None:intergenic 60.0%
TTCCTTAACCAGTGCCCCGG+GGG - Chr6:199315-199334 MsG0680030293.01.T01:intron 60.0%
! GAGCGCGAGTTGGATCTGAG+AGG - Chr6:194464-194483 MsG0680030293.01.T01:intron 60.0%
!!! GGCTTTTTTGGCCCCTAGCC+AGG - Chr6:198648-198667 MsG0680030293.01.T01:intron 60.0%
TGCCATTGCACCGCCATGGC+AGG + Chr6:196163-196182 None:intergenic 65.0%
GGCCTGCCATGGCGGTGCAA+TGG - Chr6:196158-196177 MsG0680030293.01.T01:intron 70.0%
!! TGCCCCCGGGGCACTGGTTA+AGG + Chr6:199320-199339 None:intergenic 70.0%
! AACCAGTGCCCCGGGGGCAC+CGG - Chr6:199321-199340 MsG0680030293.01.T01:intron 75.0%
! AACCGGTGCCCCCGGGGCAC+TGG + Chr6:199326-199345 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr6 gene 193446 200568 193446 ID=MsG0680030293.01;Name=MsG0680030293.01
Chr6 mRNA 193446 200568 193446 ID=MsG0680030293.01.T01;Parent=MsG0680030293.01;Name=MsG0680030293.01.T01;_AED=0.55;_eAED=0.55;_QI=99|0.75|0.77|0.77|0.87|0.77|9|0|382
Chr6 exon 193446 193719 193446 ID=MsG0680030293.01.T01:exon:1958;Parent=MsG0680030293.01.T01
Chr6 exon 195050 195102 195050 ID=MsG0680030293.01.T01:exon:1957;Parent=MsG0680030293.01.T01
Chr6 exon 196005 196154 196005 ID=MsG0680030293.01.T01:exon:1956;Parent=MsG0680030293.01.T01
Chr6 exon 196766 196816 196766 ID=MsG0680030293.01.T01:exon:1955;Parent=MsG0680030293.01.T01
Chr6 exon 198159 198320 198159 ID=MsG0680030293.01.T01:exon:1954;Parent=MsG0680030293.01.T01
Chr6 exon 198841 199046 198841 ID=MsG0680030293.01.T01:exon:1953;Parent=MsG0680030293.01.T01
Chr6 exon 199146 199275 199146 ID=MsG0680030293.01.T01:exon:1952;Parent=MsG0680030293.01.T01
Chr6 exon 199488 199614 199488 ID=MsG0680030293.01.T01:exon:1951;Parent=MsG0680030293.01.T01
Chr6 exon 200474 200568 200474 ID=MsG0680030293.01.T01:exon:1950;Parent=MsG0680030293.01.T01
Chr6 five_prime_UTR 200474 200568 200474 ID=MsG0680030293.01.T01:five_prime_utr;Parent=MsG0680030293.01.T01
Chr6 five_prime_UTR 199611 199614 199611 ID=MsG0680030293.01.T01:five_prime_utr;Parent=MsG0680030293.01.T01
Chr6 CDS 199488 199610 199488 ID=MsG0680030293.01.T01:cds;Parent=MsG0680030293.01.T01
Chr6 CDS 199146 199275 199146 ID=MsG0680030293.01.T01:cds;Parent=MsG0680030293.01.T01
Chr6 CDS 198841 199046 198841 ID=MsG0680030293.01.T01:cds;Parent=MsG0680030293.01.T01
Chr6 CDS 198159 198320 198159 ID=MsG0680030293.01.T01:cds;Parent=MsG0680030293.01.T01
Chr6 CDS 196766 196816 196766 ID=MsG0680030293.01.T01:cds;Parent=MsG0680030293.01.T01
Chr6 CDS 196005 196154 196005 ID=MsG0680030293.01.T01:cds;Parent=MsG0680030293.01.T01
Chr6 CDS 195050 195102 195050 ID=MsG0680030293.01.T01:cds;Parent=MsG0680030293.01.T01
Chr6 CDS 193446 193719 193446 ID=MsG0680030293.01.T01:cds;Parent=MsG0680030293.01.T01
Gene Sequence

>MsG0680030293.01.T01

ATGGTGAGACTCACTGCTGACCTGATCTGGAAAAGTCCTCATTTCTTCAATACCATTAAAGAGCGCGAGTTGGATCTGAGAGGCAACAAAATATCTGTAATCGAAAATTTAGGTGCCACAGAGGACCAATTTGACACAGTAGATTTATCCGACAATGAGATTGTCAAATTGGAAAACTTACCAAATCTTAACCGATTGGGTACACTACTCATTAACAACAACAGGATTACTAGAATTAATCCTAATATTGGAGAGTTCCTACCGAATTTACACACACTAGTTCTCACAAACAACAGGATTGTAAACTTAGTAGAAATTGATCCTTTGACATCCCTTCCAAAGCTGCAGTTCCTTAGTCTTCTTGACAACAATATTACAAAAAAAGTGAATTATAGGCTTTATGTTATCCACAAGCTGAAATCCCTCCGAGTTTTGGACTTCAAGAAAGTGAAAGATAAGGAACGTTTAGAAGCGAAAAACTTGTTTGAATCAAAGGAAGCTATAGAAGAAGCTCAAAACACACCAGCGCCTGTTGAAACTCCAGATGTTTCAGAAGCTACGGAGGAACAACAGACACCCAAAGTGACTCCTCCTACTCCAGAGCAAATTATTGCTATTAAGGCTGCCATTGTTAGTTCACAGACTCTTGAAGATGTCGCTAGACTTGAAAAGGCACTGAAGTCTGGCCAACTTCCTGCAGATCTTAAAAGCTTGACTGATAATATGATGATTGATAATGTCAATGAAAAACAAGATGTGGTTCCTGATGAATCTAAAGATACACAAGAGCAGAGTAATACTGATTCTACTGCAATGGAACAGCTAAGTTCATCTAACTCGTTGAAGGTCTGGTCTAACTCGTTGATCAACTTAAGGTACGTGAATGACATTGTGATTATAGATAGAGTAATATTTCTACGATTCGTGGAAGTTTCCATTAAGTTAATCAATGAAAATGAGATTTCTGGAATGACATTGTCAAATTTCATATCTATCCTAGAGAGCATAAGCATGTCAAAGATTCTCCAATCTTGGCCTTTGAAAGTCTCCACCGATCTAGCCATAGTCATGCTAAATGATCGGGCATTGGATGAGAAATCGCTTGGCCTGTCTAACAACAAGAAGATGGTAATATTTAGCAGGGCATAA
Protein sequence

>MsG0680030293.01.T01

MVRLTADLIWKSPHFFNTIKERELDLRGNKISVIENLGATEDQFDTVDLSDNEIVKLENLPNLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLTSLPKLQFLSLLDNNITKKVNYRLYVIHKLKSLRVLDFKKVKDKERLEAKNLFESKEAIEEAQNTPAPVETPDVSEATEEQQTPKVTPPTPEQIIAIKAAIVSSQTLEDVARLEKALKSGQLPADLKSLTDNMMIDNVNEKQDVVPDESKDTQEQSNTDSTAMEQLSSSNSLKVWSNSLINLRYVNDIVIIDRVIFLRFVEVSIKLINENEISGMTLSNFISILESISMSKILQSWPLKVSTDLAIVMLNDRALDEKSLGLSNNKKMVIFSRA*